Multiple sequence alignment - TraesCS4B01G058300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G058300 chr4B 100.000 3263 0 0 1 3263 49458579 49461841 0.000000e+00 6026.0
1 TraesCS4B01G058300 chr4A 90.175 2514 146 44 430 2908 567708606 567706159 0.000000e+00 3181.0
2 TraesCS4B01G058300 chr4A 84.644 534 64 12 2034 2562 567705417 567704897 1.740000e-142 516.0
3 TraesCS4B01G058300 chr4A 90.526 190 17 1 3073 3262 567705885 567705697 1.940000e-62 250.0
4 TraesCS4B01G058300 chr4A 95.082 61 3 0 354 414 567708655 567708595 2.680000e-16 97.1
5 TraesCS4B01G058300 chr5D 96.753 308 9 1 1 307 46050268 46050575 2.250000e-141 512.0
6 TraesCS4B01G058300 chr6D 96.066 305 12 0 1 305 345190511 345190815 6.290000e-137 497.0
7 TraesCS4B01G058300 chr6D 83.478 115 19 0 2956 3070 128260727 128260613 1.240000e-19 108.0
8 TraesCS4B01G058300 chr2A 95.425 306 13 1 1 306 44704905 44704601 1.360000e-133 486.0
9 TraesCS4B01G058300 chr7A 95.349 301 14 0 1 301 123262335 123262635 2.280000e-131 479.0
10 TraesCS4B01G058300 chr7A 88.034 234 19 2 1208 1441 188918862 188918638 5.370000e-68 268.0
11 TraesCS4B01G058300 chr7A 89.855 138 5 5 1219 1352 315275513 315275645 5.600000e-38 169.0
12 TraesCS4B01G058300 chr7A 83.784 111 16 1 2963 3071 4987751 4987861 1.600000e-18 104.0
13 TraesCS4B01G058300 chr7A 97.872 47 1 0 1386 1432 315275934 315275980 7.500000e-12 82.4
14 TraesCS4B01G058300 chr5B 93.831 308 18 1 1 307 424242168 424241861 2.290000e-126 462.0
15 TraesCS4B01G058300 chr2B 94.079 304 18 0 1 304 663688134 663688437 2.290000e-126 462.0
16 TraesCS4B01G058300 chr2B 87.786 131 12 1 1311 1441 273752884 273752758 2.030000e-32 150.0
17 TraesCS4B01G058300 chr6B 93.443 305 16 3 1 304 117625147 117625448 1.790000e-122 449.0
18 TraesCS4B01G058300 chr6B 84.259 108 17 0 2963 3070 348297231 348297338 4.450000e-19 106.0
19 TraesCS4B01G058300 chr7B 88.483 356 28 1 1120 1475 332813135 332813477 5.040000e-113 418.0
20 TraesCS4B01G058300 chr7B 84.956 113 15 1 2962 3072 489864475 489864363 2.660000e-21 113.0
21 TraesCS4B01G058300 chr7B 84.545 110 17 0 2962 3071 102232098 102231989 3.440000e-20 110.0
22 TraesCS4B01G058300 chr6A 90.099 303 27 3 1 301 311584129 311584430 1.100000e-104 390.0
23 TraesCS4B01G058300 chr1A 89.937 159 9 3 1195 1352 549592854 549593006 7.140000e-47 198.0
24 TraesCS4B01G058300 chr5A 89.362 141 9 2 1213 1352 2739356 2739221 4.330000e-39 172.0
25 TraesCS4B01G058300 chr3A 86.875 160 14 3 1194 1352 31569592 31569745 4.330000e-39 172.0
26 TraesCS4B01G058300 chr3A 89.130 138 9 2 1216 1352 23254027 23253895 2.010000e-37 167.0
27 TraesCS4B01G058300 chr3A 96.000 50 2 0 1386 1435 23253606 23253557 7.500000e-12 82.4
28 TraesCS4B01G058300 chr2D 88.000 150 12 2 1204 1352 645836784 645836928 4.330000e-39 172.0
29 TraesCS4B01G058300 chr2D 82.759 116 19 1 2956 3070 647839608 647839493 5.760000e-18 102.0
30 TraesCS4B01G058300 chrUn 92.727 110 3 1 1213 1322 100487345 100487241 1.570000e-33 154.0
31 TraesCS4B01G058300 chr4D 89.381 113 9 3 299 410 34590259 34590369 4.390000e-29 139.0
32 TraesCS4B01G058300 chr1D 85.981 107 15 0 2963 3069 80376849 80376743 7.400000e-22 115.0
33 TraesCS4B01G058300 chr7D 85.321 109 16 0 2956 3064 535881227 535881335 2.660000e-21 113.0
34 TraesCS4B01G058300 chr7D 86.275 102 14 0 2963 3064 254340190 254340291 9.570000e-21 111.0
35 TraesCS4B01G058300 chr3B 77.570 107 20 4 130 234 815966800 815966904 9.780000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G058300 chr4B 49458579 49461841 3262 False 6026.000 6026 100.00000 1 3263 1 chr4B.!!$F1 3262
1 TraesCS4B01G058300 chr4A 567704897 567708655 3758 True 1011.025 3181 90.10675 354 3262 4 chr4A.!!$R1 2908

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
301 302 0.037590 TGCCTATCCAAACAACGCCT 59.962 50.0 0.0 0.0 0.0 5.52 F
1742 1759 0.031585 TACATGCTACCGTCCGATGC 59.968 55.0 0.0 0.0 0.0 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2159 2176 0.179205 CCTCCACTCGTCGTCGTTAC 60.179 60.0 1.33 0.00 38.33 2.50 R
2655 2675 0.313672 GGTTCGTGCAATTTGCTCCA 59.686 50.0 21.19 4.86 45.31 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 3.554692 CAACCGCCTCGTCGCATC 61.555 66.667 0.00 0.00 0.00 3.91
38 39 4.814294 AACCGCCTCGTCGCATCC 62.814 66.667 0.00 0.00 0.00 3.51
42 43 4.593864 GCCTCGTCGCATCCCCTC 62.594 72.222 0.00 0.00 0.00 4.30
43 44 3.917760 CCTCGTCGCATCCCCTCC 61.918 72.222 0.00 0.00 0.00 4.30
44 45 4.271816 CTCGTCGCATCCCCTCCG 62.272 72.222 0.00 0.00 0.00 4.63
46 47 4.570663 CGTCGCATCCCCTCCGTC 62.571 72.222 0.00 0.00 0.00 4.79
47 48 3.148279 GTCGCATCCCCTCCGTCT 61.148 66.667 0.00 0.00 0.00 4.18
48 49 2.363795 TCGCATCCCCTCCGTCTT 60.364 61.111 0.00 0.00 0.00 3.01
49 50 2.202932 CGCATCCCCTCCGTCTTG 60.203 66.667 0.00 0.00 0.00 3.02
50 51 2.514824 GCATCCCCTCCGTCTTGC 60.515 66.667 0.00 0.00 0.00 4.01
51 52 2.989639 CATCCCCTCCGTCTTGCA 59.010 61.111 0.00 0.00 0.00 4.08
52 53 1.528824 CATCCCCTCCGTCTTGCAT 59.471 57.895 0.00 0.00 0.00 3.96
53 54 0.816825 CATCCCCTCCGTCTTGCATG 60.817 60.000 0.00 0.00 0.00 4.06
54 55 0.982852 ATCCCCTCCGTCTTGCATGA 60.983 55.000 0.00 0.00 0.00 3.07
55 56 1.450312 CCCCTCCGTCTTGCATGAC 60.450 63.158 19.96 19.96 0.00 3.06
56 57 1.599047 CCCTCCGTCTTGCATGACT 59.401 57.895 25.08 0.00 35.00 3.41
57 58 0.460987 CCCTCCGTCTTGCATGACTC 60.461 60.000 25.08 5.80 35.00 3.36
58 59 0.803768 CCTCCGTCTTGCATGACTCG 60.804 60.000 25.08 16.87 35.00 4.18
59 60 0.803768 CTCCGTCTTGCATGACTCGG 60.804 60.000 25.08 22.25 39.40 4.63
60 61 2.456119 CCGTCTTGCATGACTCGGC 61.456 63.158 25.08 4.52 35.00 5.54
61 62 2.792290 CGTCTTGCATGACTCGGCG 61.792 63.158 25.08 11.83 35.00 6.46
62 63 1.738099 GTCTTGCATGACTCGGCGT 60.738 57.895 21.97 0.00 34.39 5.68
63 64 1.737735 TCTTGCATGACTCGGCGTG 60.738 57.895 6.85 7.20 0.00 5.34
77 78 3.648982 CGTGCAGCTGCCGACAAA 61.649 61.111 34.64 13.43 41.18 2.83
78 79 2.050985 GTGCAGCTGCCGACAAAC 60.051 61.111 34.64 21.27 41.18 2.93
79 80 2.515757 TGCAGCTGCCGACAAACA 60.516 55.556 34.64 11.80 41.18 2.83
80 81 2.050985 GCAGCTGCCGACAAACAC 60.051 61.111 28.76 0.00 34.31 3.32
81 82 2.546494 GCAGCTGCCGACAAACACT 61.546 57.895 28.76 0.00 34.31 3.55
82 83 2.024918 CAGCTGCCGACAAACACTT 58.975 52.632 0.00 0.00 0.00 3.16
83 84 0.317269 CAGCTGCCGACAAACACTTG 60.317 55.000 0.00 0.00 38.61 3.16
84 85 1.658409 GCTGCCGACAAACACTTGC 60.658 57.895 0.00 0.00 35.84 4.01
85 86 2.024918 CTGCCGACAAACACTTGCT 58.975 52.632 0.00 0.00 35.84 3.91
86 87 0.040958 CTGCCGACAAACACTTGCTC 60.041 55.000 0.00 0.00 35.84 4.26
87 88 0.463654 TGCCGACAAACACTTGCTCT 60.464 50.000 0.00 0.00 35.84 4.09
88 89 0.040958 GCCGACAAACACTTGCTCTG 60.041 55.000 0.00 0.00 35.84 3.35
89 90 0.040958 CCGACAAACACTTGCTCTGC 60.041 55.000 0.00 0.00 35.84 4.26
90 91 0.940126 CGACAAACACTTGCTCTGCT 59.060 50.000 0.00 0.00 35.84 4.24
91 92 1.070309 CGACAAACACTTGCTCTGCTC 60.070 52.381 0.00 0.00 35.84 4.26
92 93 2.216898 GACAAACACTTGCTCTGCTCT 58.783 47.619 0.00 0.00 35.84 4.09
93 94 2.216898 ACAAACACTTGCTCTGCTCTC 58.783 47.619 0.00 0.00 35.84 3.20
94 95 2.216046 CAAACACTTGCTCTGCTCTCA 58.784 47.619 0.00 0.00 0.00 3.27
95 96 2.615447 CAAACACTTGCTCTGCTCTCAA 59.385 45.455 0.00 0.00 0.00 3.02
96 97 2.855209 ACACTTGCTCTGCTCTCAAT 57.145 45.000 0.00 0.00 0.00 2.57
97 98 3.137446 ACACTTGCTCTGCTCTCAATT 57.863 42.857 0.00 0.00 0.00 2.32
98 99 2.812591 ACACTTGCTCTGCTCTCAATTG 59.187 45.455 0.00 0.00 0.00 2.32
99 100 2.161808 CACTTGCTCTGCTCTCAATTGG 59.838 50.000 5.42 0.00 0.00 3.16
100 101 1.743958 CTTGCTCTGCTCTCAATTGGG 59.256 52.381 5.42 1.15 0.00 4.12
101 102 0.986527 TGCTCTGCTCTCAATTGGGA 59.013 50.000 8.00 8.00 0.00 4.37
102 103 1.562942 TGCTCTGCTCTCAATTGGGAT 59.437 47.619 8.85 0.00 0.00 3.85
103 104 2.220313 GCTCTGCTCTCAATTGGGATC 58.780 52.381 8.85 5.21 0.00 3.36
104 105 2.848691 CTCTGCTCTCAATTGGGATCC 58.151 52.381 8.85 1.92 0.00 3.36
105 106 2.172082 CTCTGCTCTCAATTGGGATCCA 59.828 50.000 15.23 8.41 0.00 3.41
121 122 7.744087 TGGGATCCAATTTATGTAAATCTCG 57.256 36.000 15.23 0.00 35.00 4.04
122 123 7.287061 TGGGATCCAATTTATGTAAATCTCGT 58.713 34.615 15.23 0.00 35.00 4.18
123 124 7.777910 TGGGATCCAATTTATGTAAATCTCGTT 59.222 33.333 15.23 0.00 35.00 3.85
124 125 8.630037 GGGATCCAATTTATGTAAATCTCGTTT 58.370 33.333 15.23 0.00 35.00 3.60
170 171 9.542462 TCGTTTTTCTATATACCTGAAATCTGG 57.458 33.333 4.93 4.93 40.37 3.86
171 172 8.774586 CGTTTTTCTATATACCTGAAATCTGGG 58.225 37.037 10.59 2.22 39.04 4.45
172 173 9.628500 GTTTTTCTATATACCTGAAATCTGGGT 57.372 33.333 10.59 7.37 39.04 4.51
177 178 9.627123 TCTATATACCTGAAATCTGGGTTTTTG 57.373 33.333 10.59 0.00 39.04 2.44
178 179 9.627123 CTATATACCTGAAATCTGGGTTTTTGA 57.373 33.333 10.59 0.00 39.04 2.69
179 180 8.893563 ATATACCTGAAATCTGGGTTTTTGAA 57.106 30.769 10.59 0.00 39.04 2.69
180 181 5.948742 ACCTGAAATCTGGGTTTTTGAAA 57.051 34.783 10.59 0.00 39.04 2.69
181 182 6.306643 ACCTGAAATCTGGGTTTTTGAAAA 57.693 33.333 10.59 0.00 39.04 2.29
182 183 6.348498 ACCTGAAATCTGGGTTTTTGAAAAG 58.652 36.000 10.59 0.00 39.04 2.27
183 184 5.237127 CCTGAAATCTGGGTTTTTGAAAAGC 59.763 40.000 9.30 9.30 43.59 3.51
193 194 6.494893 GGTTTTTGAAAAGCCAAGTTTTCT 57.505 33.333 17.12 0.00 43.83 2.52
194 195 7.603963 GGTTTTTGAAAAGCCAAGTTTTCTA 57.396 32.000 17.12 1.13 43.83 2.10
195 196 8.208718 GGTTTTTGAAAAGCCAAGTTTTCTAT 57.791 30.769 17.12 0.00 43.83 1.98
196 197 9.320352 GGTTTTTGAAAAGCCAAGTTTTCTATA 57.680 29.630 17.12 0.00 43.83 1.31
201 202 9.691362 TTGAAAAGCCAAGTTTTCTATATTCAC 57.309 29.630 9.48 0.00 43.83 3.18
202 203 8.020819 TGAAAAGCCAAGTTTTCTATATTCACG 58.979 33.333 9.48 0.00 43.83 4.35
203 204 6.436843 AAGCCAAGTTTTCTATATTCACGG 57.563 37.500 0.00 0.00 0.00 4.94
204 205 5.741011 AGCCAAGTTTTCTATATTCACGGA 58.259 37.500 0.00 0.00 0.00 4.69
205 206 6.357367 AGCCAAGTTTTCTATATTCACGGAT 58.643 36.000 0.00 0.00 0.00 4.18
206 207 6.828785 AGCCAAGTTTTCTATATTCACGGATT 59.171 34.615 0.00 0.00 0.00 3.01
207 208 6.912591 GCCAAGTTTTCTATATTCACGGATTG 59.087 38.462 0.00 0.00 0.00 2.67
208 209 7.417612 CCAAGTTTTCTATATTCACGGATTGG 58.582 38.462 0.00 0.00 0.00 3.16
209 210 7.067008 CCAAGTTTTCTATATTCACGGATTGGT 59.933 37.037 0.00 0.00 0.00 3.67
210 211 8.458843 CAAGTTTTCTATATTCACGGATTGGTT 58.541 33.333 0.00 0.00 0.00 3.67
211 212 9.675464 AAGTTTTCTATATTCACGGATTGGTTA 57.325 29.630 0.00 0.00 0.00 2.85
212 213 9.326413 AGTTTTCTATATTCACGGATTGGTTAG 57.674 33.333 0.00 0.00 0.00 2.34
213 214 9.321562 GTTTTCTATATTCACGGATTGGTTAGA 57.678 33.333 0.00 0.00 0.00 2.10
214 215 9.542462 TTTTCTATATTCACGGATTGGTTAGAG 57.458 33.333 0.00 0.00 0.00 2.43
215 216 7.834881 TCTATATTCACGGATTGGTTAGAGT 57.165 36.000 0.00 0.00 0.00 3.24
216 217 8.246430 TCTATATTCACGGATTGGTTAGAGTT 57.754 34.615 0.00 0.00 0.00 3.01
217 218 8.141909 TCTATATTCACGGATTGGTTAGAGTTG 58.858 37.037 0.00 0.00 0.00 3.16
218 219 2.695359 TCACGGATTGGTTAGAGTTGC 58.305 47.619 0.00 0.00 0.00 4.17
219 220 1.737793 CACGGATTGGTTAGAGTTGCC 59.262 52.381 0.00 0.00 0.00 4.52
220 221 1.349688 ACGGATTGGTTAGAGTTGCCA 59.650 47.619 0.00 0.00 0.00 4.92
221 222 2.224670 ACGGATTGGTTAGAGTTGCCAA 60.225 45.455 0.00 0.00 45.02 4.52
222 223 2.817258 CGGATTGGTTAGAGTTGCCAAA 59.183 45.455 0.00 0.00 44.26 3.28
223 224 3.365969 CGGATTGGTTAGAGTTGCCAAAC 60.366 47.826 0.00 0.00 44.26 2.93
224 225 3.572255 GGATTGGTTAGAGTTGCCAAACA 59.428 43.478 0.00 0.00 44.26 2.83
225 226 4.038642 GGATTGGTTAGAGTTGCCAAACAA 59.961 41.667 0.00 0.00 44.26 2.83
226 227 4.647424 TTGGTTAGAGTTGCCAAACAAG 57.353 40.909 0.00 0.00 39.50 3.16
227 228 3.892284 TGGTTAGAGTTGCCAAACAAGA 58.108 40.909 0.00 0.00 39.50 3.02
228 229 4.469657 TGGTTAGAGTTGCCAAACAAGAT 58.530 39.130 0.00 0.00 39.50 2.40
229 230 4.892934 TGGTTAGAGTTGCCAAACAAGATT 59.107 37.500 0.00 0.00 39.50 2.40
230 231 5.362430 TGGTTAGAGTTGCCAAACAAGATTT 59.638 36.000 0.00 0.00 39.50 2.17
231 232 6.127196 TGGTTAGAGTTGCCAAACAAGATTTT 60.127 34.615 0.00 0.00 39.50 1.82
232 233 7.068839 TGGTTAGAGTTGCCAAACAAGATTTTA 59.931 33.333 0.00 0.00 39.50 1.52
233 234 7.595130 GGTTAGAGTTGCCAAACAAGATTTTAG 59.405 37.037 0.00 0.00 39.50 1.85
234 235 6.715347 AGAGTTGCCAAACAAGATTTTAGT 57.285 33.333 0.00 0.00 39.50 2.24
235 236 7.112452 AGAGTTGCCAAACAAGATTTTAGTT 57.888 32.000 0.00 0.00 39.50 2.24
236 237 7.555965 AGAGTTGCCAAACAAGATTTTAGTTT 58.444 30.769 0.00 0.00 39.50 2.66
238 239 7.102993 AGTTGCCAAACAAGATTTTAGTTTGT 58.897 30.769 13.95 0.00 46.43 2.83
239 240 7.606073 AGTTGCCAAACAAGATTTTAGTTTGTT 59.394 29.630 13.95 2.56 46.43 2.83
240 241 8.874816 GTTGCCAAACAAGATTTTAGTTTGTTA 58.125 29.630 13.95 2.84 46.43 2.41
241 242 8.413899 TGCCAAACAAGATTTTAGTTTGTTAC 57.586 30.769 13.95 6.09 46.43 2.50
242 243 8.035394 TGCCAAACAAGATTTTAGTTTGTTACA 58.965 29.630 13.95 8.03 46.43 2.41
243 244 8.325282 GCCAAACAAGATTTTAGTTTGTTACAC 58.675 33.333 13.95 0.00 46.43 2.90
244 245 8.813282 CCAAACAAGATTTTAGTTTGTTACACC 58.187 33.333 13.95 0.00 46.43 4.16
245 246 9.360093 CAAACAAGATTTTAGTTTGTTACACCA 57.640 29.630 8.61 0.00 44.18 4.17
250 251 9.758651 AAGATTTTAGTTTGTTACACCATTTCC 57.241 29.630 0.00 0.00 0.00 3.13
251 252 8.364894 AGATTTTAGTTTGTTACACCATTTCCC 58.635 33.333 0.00 0.00 0.00 3.97
252 253 7.663043 TTTTAGTTTGTTACACCATTTCCCT 57.337 32.000 0.00 0.00 0.00 4.20
253 254 6.642707 TTAGTTTGTTACACCATTTCCCTG 57.357 37.500 0.00 0.00 0.00 4.45
254 255 3.895041 AGTTTGTTACACCATTTCCCTGG 59.105 43.478 0.00 0.00 42.35 4.45
263 264 3.665745 CCATTTCCCTGGTTTGTGAAG 57.334 47.619 0.00 0.00 0.00 3.02
264 265 3.230134 CCATTTCCCTGGTTTGTGAAGA 58.770 45.455 0.00 0.00 0.00 2.87
265 266 3.834231 CCATTTCCCTGGTTTGTGAAGAT 59.166 43.478 0.00 0.00 0.00 2.40
266 267 4.082026 CCATTTCCCTGGTTTGTGAAGATC 60.082 45.833 0.00 0.00 0.00 2.75
267 268 2.879103 TCCCTGGTTTGTGAAGATCC 57.121 50.000 0.00 0.00 0.00 3.36
268 269 1.003118 TCCCTGGTTTGTGAAGATCCG 59.997 52.381 0.00 0.00 0.00 4.18
269 270 1.453155 CCTGGTTTGTGAAGATCCGG 58.547 55.000 0.00 0.00 0.00 5.14
270 271 1.271379 CCTGGTTTGTGAAGATCCGGT 60.271 52.381 0.00 0.00 0.00 5.28
271 272 2.504367 CTGGTTTGTGAAGATCCGGTT 58.496 47.619 0.00 0.00 0.00 4.44
272 273 2.884639 CTGGTTTGTGAAGATCCGGTTT 59.115 45.455 0.00 0.00 0.00 3.27
273 274 3.292460 TGGTTTGTGAAGATCCGGTTTT 58.708 40.909 0.00 0.00 0.00 2.43
274 275 3.067461 TGGTTTGTGAAGATCCGGTTTTG 59.933 43.478 0.00 0.00 0.00 2.44
275 276 3.049912 GTTTGTGAAGATCCGGTTTTGC 58.950 45.455 0.00 0.00 0.00 3.68
276 277 1.974265 TGTGAAGATCCGGTTTTGCA 58.026 45.000 0.00 0.00 0.00 4.08
277 278 2.513753 TGTGAAGATCCGGTTTTGCAT 58.486 42.857 0.00 0.00 0.00 3.96
278 279 3.680490 TGTGAAGATCCGGTTTTGCATA 58.320 40.909 0.00 0.00 0.00 3.14
279 280 4.269183 TGTGAAGATCCGGTTTTGCATAT 58.731 39.130 0.00 0.00 0.00 1.78
280 281 5.432645 TGTGAAGATCCGGTTTTGCATATA 58.567 37.500 0.00 0.00 0.00 0.86
281 282 5.295787 TGTGAAGATCCGGTTTTGCATATAC 59.704 40.000 0.00 0.00 0.00 1.47
282 283 5.527582 GTGAAGATCCGGTTTTGCATATACT 59.472 40.000 0.00 0.00 0.00 2.12
283 284 5.527214 TGAAGATCCGGTTTTGCATATACTG 59.473 40.000 0.00 0.00 0.00 2.74
297 298 6.002062 GCATATACTGCCTATCCAAACAAC 57.998 41.667 0.00 0.00 45.66 3.32
298 299 5.334105 GCATATACTGCCTATCCAAACAACG 60.334 44.000 0.00 0.00 45.66 4.10
299 300 1.165270 ACTGCCTATCCAAACAACGC 58.835 50.000 0.00 0.00 0.00 4.84
300 301 0.451783 CTGCCTATCCAAACAACGCC 59.548 55.000 0.00 0.00 0.00 5.68
301 302 0.037590 TGCCTATCCAAACAACGCCT 59.962 50.000 0.00 0.00 0.00 5.52
302 303 1.279558 TGCCTATCCAAACAACGCCTA 59.720 47.619 0.00 0.00 0.00 3.93
303 304 2.290387 TGCCTATCCAAACAACGCCTAA 60.290 45.455 0.00 0.00 0.00 2.69
304 305 2.750712 GCCTATCCAAACAACGCCTAAA 59.249 45.455 0.00 0.00 0.00 1.85
305 306 3.181500 GCCTATCCAAACAACGCCTAAAG 60.181 47.826 0.00 0.00 0.00 1.85
306 307 4.007659 CCTATCCAAACAACGCCTAAAGT 58.992 43.478 0.00 0.00 0.00 2.66
307 308 5.180271 CCTATCCAAACAACGCCTAAAGTA 58.820 41.667 0.00 0.00 0.00 2.24
308 309 5.644636 CCTATCCAAACAACGCCTAAAGTAA 59.355 40.000 0.00 0.00 0.00 2.24
309 310 6.317893 CCTATCCAAACAACGCCTAAAGTAAT 59.682 38.462 0.00 0.00 0.00 1.89
310 311 5.616488 TCCAAACAACGCCTAAAGTAATC 57.384 39.130 0.00 0.00 0.00 1.75
311 312 5.064558 TCCAAACAACGCCTAAAGTAATCA 58.935 37.500 0.00 0.00 0.00 2.57
312 313 5.049267 TCCAAACAACGCCTAAAGTAATCAC 60.049 40.000 0.00 0.00 0.00 3.06
313 314 4.657075 AACAACGCCTAAAGTAATCACG 57.343 40.909 0.00 0.00 0.00 4.35
314 315 3.656559 ACAACGCCTAAAGTAATCACGT 58.343 40.909 0.00 0.00 0.00 4.49
315 316 3.676646 ACAACGCCTAAAGTAATCACGTC 59.323 43.478 0.00 0.00 0.00 4.34
316 317 3.581024 ACGCCTAAAGTAATCACGTCA 57.419 42.857 0.00 0.00 0.00 4.35
317 318 3.248266 ACGCCTAAAGTAATCACGTCAC 58.752 45.455 0.00 0.00 0.00 3.67
318 319 2.601763 CGCCTAAAGTAATCACGTCACC 59.398 50.000 0.00 0.00 0.00 4.02
319 320 3.592059 GCCTAAAGTAATCACGTCACCA 58.408 45.455 0.00 0.00 0.00 4.17
320 321 4.189231 GCCTAAAGTAATCACGTCACCAT 58.811 43.478 0.00 0.00 0.00 3.55
321 322 4.270325 GCCTAAAGTAATCACGTCACCATC 59.730 45.833 0.00 0.00 0.00 3.51
322 323 4.809426 CCTAAAGTAATCACGTCACCATCC 59.191 45.833 0.00 0.00 0.00 3.51
323 324 3.973206 AAGTAATCACGTCACCATCCA 57.027 42.857 0.00 0.00 0.00 3.41
324 325 4.487714 AAGTAATCACGTCACCATCCAT 57.512 40.909 0.00 0.00 0.00 3.41
325 326 4.487714 AGTAATCACGTCACCATCCATT 57.512 40.909 0.00 0.00 0.00 3.16
326 327 4.843728 AGTAATCACGTCACCATCCATTT 58.156 39.130 0.00 0.00 0.00 2.32
327 328 5.253330 AGTAATCACGTCACCATCCATTTT 58.747 37.500 0.00 0.00 0.00 1.82
328 329 4.439305 AATCACGTCACCATCCATTTTG 57.561 40.909 0.00 0.00 0.00 2.44
329 330 2.857483 TCACGTCACCATCCATTTTGT 58.143 42.857 0.00 0.00 0.00 2.83
330 331 3.218453 TCACGTCACCATCCATTTTGTT 58.782 40.909 0.00 0.00 0.00 2.83
331 332 4.390264 TCACGTCACCATCCATTTTGTTA 58.610 39.130 0.00 0.00 0.00 2.41
332 333 4.214545 TCACGTCACCATCCATTTTGTTAC 59.785 41.667 0.00 0.00 0.00 2.50
333 334 3.504520 ACGTCACCATCCATTTTGTTACC 59.495 43.478 0.00 0.00 0.00 2.85
334 335 3.425625 CGTCACCATCCATTTTGTTACCG 60.426 47.826 0.00 0.00 0.00 4.02
335 336 3.504520 GTCACCATCCATTTTGTTACCGT 59.495 43.478 0.00 0.00 0.00 4.83
336 337 3.754323 TCACCATCCATTTTGTTACCGTC 59.246 43.478 0.00 0.00 0.00 4.79
337 338 2.745281 ACCATCCATTTTGTTACCGTCG 59.255 45.455 0.00 0.00 0.00 5.12
338 339 2.096819 CCATCCATTTTGTTACCGTCGG 59.903 50.000 10.48 10.48 0.00 4.79
339 340 1.158434 TCCATTTTGTTACCGTCGGC 58.842 50.000 12.28 0.00 0.00 5.54
340 341 0.875728 CCATTTTGTTACCGTCGGCA 59.124 50.000 12.28 0.00 0.00 5.69
341 342 1.267261 CCATTTTGTTACCGTCGGCAA 59.733 47.619 12.28 0.77 0.00 4.52
342 343 2.287668 CCATTTTGTTACCGTCGGCAAA 60.288 45.455 12.28 11.12 0.00 3.68
343 344 3.372954 CATTTTGTTACCGTCGGCAAAA 58.627 40.909 22.31 22.31 42.48 2.44
344 345 2.759538 TTTGTTACCGTCGGCAAAAG 57.240 45.000 12.28 0.00 0.00 2.27
345 346 0.308376 TTGTTACCGTCGGCAAAAGC 59.692 50.000 12.28 0.00 0.00 3.51
346 347 0.814410 TGTTACCGTCGGCAAAAGCA 60.814 50.000 12.28 0.00 0.00 3.91
347 348 0.519961 GTTACCGTCGGCAAAAGCAT 59.480 50.000 12.28 0.00 0.00 3.79
348 349 0.519519 TTACCGTCGGCAAAAGCATG 59.480 50.000 12.28 0.00 0.00 4.06
349 350 1.302383 TACCGTCGGCAAAAGCATGG 61.302 55.000 12.28 0.00 0.00 3.66
350 351 2.625823 CCGTCGGCAAAAGCATGGT 61.626 57.895 0.00 0.00 0.00 3.55
351 352 1.442520 CGTCGGCAAAAGCATGGTG 60.443 57.895 0.00 0.00 0.00 4.17
352 353 1.080569 GTCGGCAAAAGCATGGTGG 60.081 57.895 0.00 0.00 0.00 4.61
397 398 4.156008 CCCAAAACTCCCTTCTTCAATACG 59.844 45.833 0.00 0.00 0.00 3.06
398 399 5.001232 CCAAAACTCCCTTCTTCAATACGA 58.999 41.667 0.00 0.00 0.00 3.43
401 402 4.884668 ACTCCCTTCTTCAATACGACAA 57.115 40.909 0.00 0.00 0.00 3.18
402 403 5.422214 ACTCCCTTCTTCAATACGACAAT 57.578 39.130 0.00 0.00 0.00 2.71
403 404 5.805728 ACTCCCTTCTTCAATACGACAATT 58.194 37.500 0.00 0.00 0.00 2.32
404 405 6.238648 ACTCCCTTCTTCAATACGACAATTT 58.761 36.000 0.00 0.00 0.00 1.82
405 406 6.715264 ACTCCCTTCTTCAATACGACAATTTT 59.285 34.615 0.00 0.00 0.00 1.82
406 407 7.881232 ACTCCCTTCTTCAATACGACAATTTTA 59.119 33.333 0.00 0.00 0.00 1.52
407 408 8.036273 TCCCTTCTTCAATACGACAATTTTAC 57.964 34.615 0.00 0.00 0.00 2.01
408 409 7.881232 TCCCTTCTTCAATACGACAATTTTACT 59.119 33.333 0.00 0.00 0.00 2.24
409 410 8.512138 CCCTTCTTCAATACGACAATTTTACTT 58.488 33.333 0.00 0.00 0.00 2.24
410 411 9.893305 CCTTCTTCAATACGACAATTTTACTTT 57.107 29.630 0.00 0.00 0.00 2.66
417 418 9.550811 CAATACGACAATTTTACTTTTACTCCC 57.449 33.333 0.00 0.00 0.00 4.30
418 419 9.511272 AATACGACAATTTTACTTTTACTCCCT 57.489 29.630 0.00 0.00 0.00 4.20
420 421 8.907222 ACGACAATTTTACTTTTACTCCCTAA 57.093 30.769 0.00 0.00 0.00 2.69
421 422 9.341078 ACGACAATTTTACTTTTACTCCCTAAA 57.659 29.630 0.00 0.00 0.00 1.85
470 471 2.239681 AGAACCCCACAAAACCACAA 57.760 45.000 0.00 0.00 0.00 3.33
471 472 1.828595 AGAACCCCACAAAACCACAAC 59.171 47.619 0.00 0.00 0.00 3.32
520 521 2.108514 CCACCACGTGCTATGCCAG 61.109 63.158 10.91 0.00 31.34 4.85
530 531 4.175337 TATGCCAGCCCGCTCACC 62.175 66.667 0.00 0.00 0.00 4.02
535 536 4.767255 CAGCCCGCTCACCCAGAC 62.767 72.222 0.00 0.00 0.00 3.51
547 548 1.152567 CCCAGACCCAGCAAAACCA 60.153 57.895 0.00 0.00 0.00 3.67
549 550 1.654220 CAGACCCAGCAAAACCACG 59.346 57.895 0.00 0.00 0.00 4.94
556 557 2.393764 CCAGCAAAACCACGACATTTC 58.606 47.619 0.00 0.00 0.00 2.17
561 562 5.006552 CAGCAAAACCACGACATTTCAAAAT 59.993 36.000 0.00 0.00 0.00 1.82
568 569 7.458038 ACCACGACATTTCAAAATACAAAAC 57.542 32.000 0.00 0.00 0.00 2.43
621 622 2.058593 AATCCCGCTGATTTCCCTTC 57.941 50.000 0.00 0.00 40.92 3.46
622 623 0.183731 ATCCCGCTGATTTCCCTTCC 59.816 55.000 0.00 0.00 0.00 3.46
623 624 1.453928 CCCGCTGATTTCCCTTCCC 60.454 63.158 0.00 0.00 0.00 3.97
624 625 1.453928 CCGCTGATTTCCCTTCCCC 60.454 63.158 0.00 0.00 0.00 4.81
667 668 3.009115 CCTCCTCCCCAGCGGAAA 61.009 66.667 0.00 0.00 41.40 3.13
668 669 2.602676 CCTCCTCCCCAGCGGAAAA 61.603 63.158 0.00 0.00 41.40 2.29
670 671 0.960861 CTCCTCCCCAGCGGAAAAAC 60.961 60.000 0.00 0.00 41.40 2.43
671 672 1.228429 CCTCCCCAGCGGAAAAACA 60.228 57.895 0.00 0.00 41.40 2.83
672 673 1.524008 CCTCCCCAGCGGAAAAACAC 61.524 60.000 0.00 0.00 41.40 3.32
674 675 1.830408 CCCCAGCGGAAAAACACCA 60.830 57.895 0.00 0.00 0.00 4.17
675 676 1.395826 CCCCAGCGGAAAAACACCAA 61.396 55.000 0.00 0.00 0.00 3.67
677 678 1.566404 CCAGCGGAAAAACACCAAAC 58.434 50.000 0.00 0.00 0.00 2.93
678 679 1.196200 CAGCGGAAAAACACCAAACG 58.804 50.000 0.00 0.00 0.00 3.60
679 680 0.101579 AGCGGAAAAACACCAAACGG 59.898 50.000 0.00 0.00 0.00 4.44
680 681 0.100861 GCGGAAAAACACCAAACGGA 59.899 50.000 0.00 0.00 0.00 4.69
681 682 1.469423 GCGGAAAAACACCAAACGGAA 60.469 47.619 0.00 0.00 0.00 4.30
683 684 2.542597 GGAAAAACACCAAACGGAACC 58.457 47.619 0.00 0.00 0.00 3.62
684 685 2.186891 GAAAAACACCAAACGGAACCG 58.813 47.619 11.83 11.83 46.03 4.44
685 686 0.456628 AAAACACCAAACGGAACCGG 59.543 50.000 17.44 0.00 44.69 5.28
686 687 2.007113 AAACACCAAACGGAACCGGC 62.007 55.000 17.44 0.00 44.69 6.13
687 688 4.020378 CACCAAACGGAACCGGCG 62.020 66.667 17.44 0.00 44.69 6.46
763 767 4.082523 CGCAGGCGAGGGAAAGGA 62.083 66.667 8.15 0.00 42.83 3.36
764 768 2.351276 GCAGGCGAGGGAAAGGAA 59.649 61.111 0.00 0.00 0.00 3.36
765 769 1.303317 GCAGGCGAGGGAAAGGAAA 60.303 57.895 0.00 0.00 0.00 3.13
766 770 1.308783 GCAGGCGAGGGAAAGGAAAG 61.309 60.000 0.00 0.00 0.00 2.62
767 771 0.678048 CAGGCGAGGGAAAGGAAAGG 60.678 60.000 0.00 0.00 0.00 3.11
768 772 0.840722 AGGCGAGGGAAAGGAAAGGA 60.841 55.000 0.00 0.00 0.00 3.36
769 773 0.037734 GGCGAGGGAAAGGAAAGGAA 59.962 55.000 0.00 0.00 0.00 3.36
770 774 1.546998 GGCGAGGGAAAGGAAAGGAAA 60.547 52.381 0.00 0.00 0.00 3.13
838 842 1.848932 GAAACTCAAACGACGCCCCC 61.849 60.000 0.00 0.00 0.00 5.40
881 895 1.421646 CGCCTCCCTTAAATCCATCCT 59.578 52.381 0.00 0.00 0.00 3.24
889 903 4.762251 CCCTTAAATCCATCCTCCGATTTC 59.238 45.833 0.00 0.00 39.04 2.17
890 904 4.762251 CCTTAAATCCATCCTCCGATTTCC 59.238 45.833 0.00 0.00 39.04 3.13
891 905 2.959465 AATCCATCCTCCGATTTCCC 57.041 50.000 0.00 0.00 0.00 3.97
893 907 0.327095 TCCATCCTCCGATTTCCCCA 60.327 55.000 0.00 0.00 0.00 4.96
920 934 2.522436 CCCCATTGCCATCGCCAT 60.522 61.111 0.00 0.00 0.00 4.40
922 936 1.068417 CCCATTGCCATCGCCATTG 59.932 57.895 0.00 0.00 0.00 2.82
936 950 1.714899 CCATTGCGAATCCGTCCACC 61.715 60.000 0.00 0.00 38.24 4.61
944 958 3.716539 ATCCGTCCACCACATCGCG 62.717 63.158 0.00 0.00 0.00 5.87
976 990 4.828925 GAGAGCCCGAGCCTGCAC 62.829 72.222 0.00 0.00 41.25 4.57
981 995 4.504916 CCCGAGCCTGCACGAGAG 62.505 72.222 10.50 0.00 32.00 3.20
1019 1033 4.395583 GTCGTCCGCGGTCGTCTT 62.396 66.667 36.32 0.00 38.89 3.01
1020 1034 4.093952 TCGTCCGCGGTCGTCTTC 62.094 66.667 36.32 14.54 38.89 2.87
1164 1181 3.190849 CCCGACGACATGCTGCTG 61.191 66.667 0.00 0.00 0.00 4.41
1179 1196 2.948720 GCTGGAGGTCTTCAGGCGT 61.949 63.158 8.23 0.00 0.00 5.68
1182 1199 1.251527 TGGAGGTCTTCAGGCGTCTC 61.252 60.000 0.00 0.00 0.00 3.36
1185 1202 1.985116 GGTCTTCAGGCGTCTCCCT 60.985 63.158 0.00 0.00 34.93 4.20
1486 1503 2.347490 GCAACCCGCTGGAGAAGA 59.653 61.111 0.00 0.00 37.77 2.87
1615 1632 2.674420 CGACCTCCCCCAACTTCTATA 58.326 52.381 0.00 0.00 0.00 1.31
1623 1640 6.044871 CCTCCCCCAACTTCTATATTCTCATT 59.955 42.308 0.00 0.00 0.00 2.57
1638 1655 6.900568 ATTCTCATTTACTCTTCTGCTTCG 57.099 37.500 0.00 0.00 0.00 3.79
1682 1699 4.496336 GCTGAAGCGGCCCCTGAT 62.496 66.667 0.00 0.00 0.00 2.90
1735 1752 0.179181 CGTCGTGTACATGCTACCGT 60.179 55.000 10.38 0.00 0.00 4.83
1742 1759 0.031585 TACATGCTACCGTCCGATGC 59.968 55.000 0.00 0.00 0.00 3.91
1762 1779 2.831526 GCCAACCCCAAATACATTCTGT 59.168 45.455 0.00 0.00 0.00 3.41
1767 1784 4.589908 ACCCCAAATACATTCTGTCTGTC 58.410 43.478 0.00 0.00 0.00 3.51
1824 1841 4.162690 AACGCCGAGATGCCCCTC 62.163 66.667 0.00 0.00 0.00 4.30
1852 1869 1.522668 CAACAACTGGATCGGCAAGA 58.477 50.000 0.00 0.00 0.00 3.02
1854 1871 0.396435 ACAACTGGATCGGCAAGACA 59.604 50.000 0.00 0.00 0.00 3.41
1866 1883 2.600769 AAGACAGAGGACGGCCGT 60.601 61.111 34.89 34.89 39.96 5.68
1878 1895 1.374758 CGGCCGTCTCTGCTTCTTT 60.375 57.895 19.50 0.00 0.00 2.52
1880 1897 1.499502 GCCGTCTCTGCTTCTTTGC 59.500 57.895 0.00 0.00 0.00 3.68
1881 1898 1.230635 GCCGTCTCTGCTTCTTTGCA 61.231 55.000 0.00 0.00 41.05 4.08
1890 1907 0.453390 GCTTCTTTGCAATCCGGGAG 59.547 55.000 0.00 0.00 0.00 4.30
1892 1909 0.965363 TTCTTTGCAATCCGGGAGCC 60.965 55.000 0.00 0.00 0.00 4.70
1923 1940 0.537143 TGAAATGGGTGCTTGACGCT 60.537 50.000 0.00 0.00 40.11 5.07
1985 2002 3.717294 GATGACCCCAGCCACGGT 61.717 66.667 0.00 0.00 34.13 4.83
1986 2003 3.976701 GATGACCCCAGCCACGGTG 62.977 68.421 0.00 0.00 30.56 4.94
2098 2115 0.796312 CACCGGGACATTGTTCTTCG 59.204 55.000 6.32 0.00 0.00 3.79
2115 2132 2.436646 GTCATGGCTGACCGGGTG 60.437 66.667 3.30 0.00 45.06 4.61
2159 2176 0.683973 AAGATGGAGAGGCTATGGCG 59.316 55.000 0.00 0.00 39.81 5.69
2160 2177 0.470833 AGATGGAGAGGCTATGGCGT 60.471 55.000 0.00 0.00 39.81 5.68
2178 2195 0.179205 GTAACGACGACGAGTGGAGG 60.179 60.000 15.32 0.00 42.66 4.30
2267 2284 1.089481 CCGGTGAATGCATAGCGTGT 61.089 55.000 17.13 0.00 36.18 4.49
2268 2285 0.026674 CGGTGAATGCATAGCGTGTG 59.973 55.000 11.87 0.00 33.56 3.82
2269 2286 1.086696 GGTGAATGCATAGCGTGTGT 58.913 50.000 0.00 0.00 0.00 3.72
2270 2287 1.202065 GGTGAATGCATAGCGTGTGTG 60.202 52.381 0.00 0.00 0.00 3.82
2300 2317 4.434330 GCTGATTACTGTAGCGTGTGTTTC 60.434 45.833 0.00 0.00 0.00 2.78
2326 2343 2.485814 GTGTCAGTGAGAAGGGAATTGC 59.514 50.000 0.00 0.00 0.00 3.56
2342 2360 7.573710 AGGGAATTGCTATGTTCAGTATTACA 58.426 34.615 0.00 0.00 0.00 2.41
2357 2375 7.524912 TCAGTATTACAGTCGAGTTTGTACTC 58.475 38.462 0.00 0.00 46.01 2.59
2371 2389 6.711277 AGTTTGTACTCTTGGATATGCTTGA 58.289 36.000 0.00 0.00 0.00 3.02
2372 2390 7.168219 AGTTTGTACTCTTGGATATGCTTGAA 58.832 34.615 0.00 0.00 0.00 2.69
2373 2391 7.665559 AGTTTGTACTCTTGGATATGCTTGAAA 59.334 33.333 0.00 0.00 0.00 2.69
2374 2392 8.462016 GTTTGTACTCTTGGATATGCTTGAAAT 58.538 33.333 0.00 0.00 0.00 2.17
2375 2393 7.558161 TGTACTCTTGGATATGCTTGAAATG 57.442 36.000 0.00 0.00 0.00 2.32
2376 2394 7.112122 TGTACTCTTGGATATGCTTGAAATGT 58.888 34.615 0.00 0.00 0.00 2.71
2377 2395 6.446781 ACTCTTGGATATGCTTGAAATGTG 57.553 37.500 0.00 0.00 0.00 3.21
2460 2478 8.378172 TGAAATTGTCTTTAGATTCGTTCTGT 57.622 30.769 1.64 0.00 35.79 3.41
2513 2531 4.492611 TCAAATGAATTGCGCAATTAGCA 58.507 34.783 39.92 33.77 40.77 3.49
2518 2536 0.527113 ATTGCGCAATTAGCACTGCA 59.473 45.000 29.36 0.32 45.10 4.41
2575 2594 7.000575 TCTCAGTAACGTTTATTATTGCAGC 57.999 36.000 5.91 0.00 0.00 5.25
2591 2610 4.678509 TGCAGCTACATAACCGAAAAAG 57.321 40.909 0.00 0.00 0.00 2.27
2596 2615 6.715464 CAGCTACATAACCGAAAAAGTATGG 58.285 40.000 0.00 0.00 0.00 2.74
2597 2616 6.537301 CAGCTACATAACCGAAAAAGTATGGA 59.463 38.462 0.00 0.00 0.00 3.41
2627 2646 5.685068 TGTTGCACATTCAAATTTCTACACG 59.315 36.000 0.00 0.00 0.00 4.49
2652 2672 8.405531 CGGAACATTATCATTTTGACCACTTAT 58.594 33.333 0.00 0.00 0.00 1.73
2655 2675 8.297470 ACATTATCATTTTGACCACTTATGCT 57.703 30.769 0.00 0.00 0.00 3.79
2726 2746 5.995565 ACAAGTATTCTACTGGCACACTA 57.004 39.130 0.00 0.00 39.39 2.74
2730 2750 7.093289 ACAAGTATTCTACTGGCACACTATTCT 60.093 37.037 0.00 0.00 39.39 2.40
2731 2751 7.045126 AGTATTCTACTGGCACACTATTCTC 57.955 40.000 0.00 0.00 37.69 2.87
2733 2753 7.999545 AGTATTCTACTGGCACACTATTCTCTA 59.000 37.037 0.00 0.00 37.69 2.43
2734 2754 6.452494 TTCTACTGGCACACTATTCTCTAC 57.548 41.667 0.00 0.00 0.00 2.59
2766 2787 5.633996 TTTGAACATTGAAAATGACGTGC 57.366 34.783 6.96 0.00 0.00 5.34
2767 2788 4.566545 TGAACATTGAAAATGACGTGCT 57.433 36.364 6.96 0.00 0.00 4.40
2768 2789 4.536065 TGAACATTGAAAATGACGTGCTC 58.464 39.130 6.96 0.00 0.00 4.26
2803 2832 1.303074 CAGCAGGCTTCCAGCTTCA 60.303 57.895 0.00 0.00 43.87 3.02
2849 2878 4.691216 GCTGTGTAAAAAGTAGACTGGAGG 59.309 45.833 0.00 0.00 0.00 4.30
2873 2902 3.254657 GGCAAGATCGATACTAGTGCTCT 59.745 47.826 5.39 0.00 0.00 4.09
2874 2903 4.472286 GCAAGATCGATACTAGTGCTCTC 58.528 47.826 5.39 0.00 0.00 3.20
2876 2905 5.278266 GCAAGATCGATACTAGTGCTCTCTT 60.278 44.000 5.39 5.94 0.00 2.85
2877 2906 6.734137 CAAGATCGATACTAGTGCTCTCTTT 58.266 40.000 5.39 0.00 0.00 2.52
2912 2941 7.900782 AAATAATGTCGTTGCTGTAGTACTT 57.099 32.000 0.00 0.00 0.00 2.24
2913 2942 6.887376 ATAATGTCGTTGCTGTAGTACTTG 57.113 37.500 0.00 0.00 0.00 3.16
2915 2944 4.834357 TGTCGTTGCTGTAGTACTTGTA 57.166 40.909 0.00 0.00 0.00 2.41
2916 2945 4.539870 TGTCGTTGCTGTAGTACTTGTAC 58.460 43.478 0.00 2.94 0.00 2.90
2918 2947 4.615961 GTCGTTGCTGTAGTACTTGTACTG 59.384 45.833 20.02 7.73 0.00 2.74
2919 2948 3.364023 CGTTGCTGTAGTACTTGTACTGC 59.636 47.826 20.02 18.90 42.55 4.40
2923 2952 3.499048 CTGTAGTACTTGTACTGCACGG 58.501 50.000 21.65 14.52 37.67 4.94
2924 2953 2.886523 TGTAGTACTTGTACTGCACGGT 59.113 45.455 21.65 1.11 37.67 4.83
2932 2975 5.589192 ACTTGTACTGCACGGTATATCTTC 58.411 41.667 0.00 0.00 0.00 2.87
2939 2982 4.126437 TGCACGGTATATCTTCATGGTTG 58.874 43.478 0.00 0.00 0.00 3.77
2940 2983 3.498397 GCACGGTATATCTTCATGGTTGG 59.502 47.826 0.00 0.00 0.00 3.77
2943 2986 5.588648 CACGGTATATCTTCATGGTTGGTTT 59.411 40.000 0.00 0.00 0.00 3.27
2944 2987 6.764085 CACGGTATATCTTCATGGTTGGTTTA 59.236 38.462 0.00 0.00 0.00 2.01
2946 2989 7.996644 ACGGTATATCTTCATGGTTGGTTTATT 59.003 33.333 0.00 0.00 0.00 1.40
2947 2990 8.289618 CGGTATATCTTCATGGTTGGTTTATTG 58.710 37.037 0.00 0.00 0.00 1.90
2950 2993 8.821686 ATATCTTCATGGTTGGTTTATTGTCA 57.178 30.769 0.00 0.00 0.00 3.58
2951 2994 6.968263 TCTTCATGGTTGGTTTATTGTCAA 57.032 33.333 0.00 0.00 0.00 3.18
2952 2995 7.353414 TCTTCATGGTTGGTTTATTGTCAAA 57.647 32.000 0.00 0.00 0.00 2.69
2953 2996 7.961351 TCTTCATGGTTGGTTTATTGTCAAAT 58.039 30.769 0.00 0.00 0.00 2.32
2960 3054 9.838339 TGGTTGGTTTATTGTCAAATTTGTTAT 57.162 25.926 17.47 11.47 0.00 1.89
3126 3270 7.667557 ACACTGTACTTGTGTAGTCATATTGT 58.332 34.615 18.71 0.00 45.49 2.71
3135 3279 9.208022 CTTGTGTAGTCATATTGTCTTCTTTCA 57.792 33.333 0.00 0.00 0.00 2.69
3136 3280 9.725019 TTGTGTAGTCATATTGTCTTCTTTCAT 57.275 29.630 0.00 0.00 0.00 2.57
3141 3285 8.261492 AGTCATATTGTCTTCTTTCATGTGAC 57.739 34.615 0.00 0.00 33.27 3.67
3144 3288 4.794248 TTGTCTTCTTTCATGTGACACG 57.206 40.909 0.22 0.00 37.38 4.49
3145 3289 3.130633 TGTCTTCTTTCATGTGACACGG 58.869 45.455 0.22 0.00 33.45 4.94
3149 3293 1.414550 TCTTTCATGTGACACGGGACA 59.585 47.619 0.00 0.00 0.00 4.02
3162 3306 1.070786 GGGACAAGCACGAGGAACA 59.929 57.895 0.00 0.00 0.00 3.18
3166 3310 0.601311 ACAAGCACGAGGAACAGCTC 60.601 55.000 0.00 0.00 36.07 4.09
3222 3366 4.832823 TCTGACATGACTAGACACCTTCAA 59.167 41.667 0.00 0.00 0.00 2.69
3235 3379 5.184864 AGACACCTTCAACAATGAACAACAA 59.815 36.000 0.00 0.00 40.59 2.83
3262 3406 0.319555 GTAGGAGCAAGTGTCGCACA 60.320 55.000 11.58 0.00 36.74 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.554692 GATGCGACGAGGCGGTTG 61.555 66.667 0.00 0.00 35.06 3.77
21 22 4.814294 GGATGCGACGAGGCGGTT 62.814 66.667 0.00 0.00 35.06 4.44
25 26 4.593864 GAGGGGATGCGACGAGGC 62.594 72.222 0.00 0.00 0.00 4.70
26 27 3.917760 GGAGGGGATGCGACGAGG 61.918 72.222 0.00 0.00 0.00 4.63
33 34 2.514824 GCAAGACGGAGGGGATGC 60.515 66.667 0.00 0.00 0.00 3.91
34 35 0.816825 CATGCAAGACGGAGGGGATG 60.817 60.000 0.00 0.00 0.00 3.51
35 36 0.982852 TCATGCAAGACGGAGGGGAT 60.983 55.000 0.00 0.00 0.00 3.85
36 37 1.612146 TCATGCAAGACGGAGGGGA 60.612 57.895 0.00 0.00 0.00 4.81
37 38 1.450312 GTCATGCAAGACGGAGGGG 60.450 63.158 6.29 0.00 0.00 4.79
38 39 0.460987 GAGTCATGCAAGACGGAGGG 60.461 60.000 15.78 0.00 43.24 4.30
39 40 0.803768 CGAGTCATGCAAGACGGAGG 60.804 60.000 15.78 3.82 43.24 4.30
40 41 0.803768 CCGAGTCATGCAAGACGGAG 60.804 60.000 15.78 10.96 43.24 4.63
41 42 1.215382 CCGAGTCATGCAAGACGGA 59.785 57.895 15.78 0.00 43.24 4.69
42 43 2.456119 GCCGAGTCATGCAAGACGG 61.456 63.158 15.78 15.13 43.24 4.79
43 44 2.792290 CGCCGAGTCATGCAAGACG 61.792 63.158 15.78 5.76 43.24 4.18
44 45 1.738099 ACGCCGAGTCATGCAAGAC 60.738 57.895 14.10 14.10 38.81 3.01
45 46 1.737735 CACGCCGAGTCATGCAAGA 60.738 57.895 0.00 0.00 0.00 3.02
46 47 2.780643 CACGCCGAGTCATGCAAG 59.219 61.111 0.00 0.00 0.00 4.01
47 48 3.422303 GCACGCCGAGTCATGCAA 61.422 61.111 0.00 0.00 38.00 4.08
48 49 4.678499 TGCACGCCGAGTCATGCA 62.678 61.111 0.00 0.00 45.45 3.96
49 50 3.857854 CTGCACGCCGAGTCATGC 61.858 66.667 0.00 0.00 38.59 4.06
50 51 3.857854 GCTGCACGCCGAGTCATG 61.858 66.667 0.00 0.00 0.00 3.07
51 52 4.074526 AGCTGCACGCCGAGTCAT 62.075 61.111 1.02 0.00 40.39 3.06
60 61 3.648982 TTTGTCGGCAGCTGCACG 61.649 61.111 37.63 33.95 44.36 5.34
61 62 2.050985 GTTTGTCGGCAGCTGCAC 60.051 61.111 37.63 28.12 44.36 4.57
62 63 2.515757 TGTTTGTCGGCAGCTGCA 60.516 55.556 37.63 18.09 44.36 4.41
63 64 2.050985 GTGTTTGTCGGCAGCTGC 60.051 61.111 30.88 30.88 41.14 5.25
64 65 0.317269 CAAGTGTTTGTCGGCAGCTG 60.317 55.000 10.11 10.11 0.00 4.24
65 66 2.024918 CAAGTGTTTGTCGGCAGCT 58.975 52.632 0.00 0.00 0.00 4.24
66 67 1.658409 GCAAGTGTTTGTCGGCAGC 60.658 57.895 0.00 0.00 36.65 5.25
67 68 0.040958 GAGCAAGTGTTTGTCGGCAG 60.041 55.000 0.00 0.00 36.65 4.85
68 69 0.463654 AGAGCAAGTGTTTGTCGGCA 60.464 50.000 0.00 0.00 36.65 5.69
69 70 0.040958 CAGAGCAAGTGTTTGTCGGC 60.041 55.000 0.00 0.00 36.65 5.54
70 71 0.040958 GCAGAGCAAGTGTTTGTCGG 60.041 55.000 0.00 0.00 36.65 4.79
71 72 0.940126 AGCAGAGCAAGTGTTTGTCG 59.060 50.000 0.00 0.00 36.65 4.35
72 73 2.216898 AGAGCAGAGCAAGTGTTTGTC 58.783 47.619 0.00 0.00 36.65 3.18
73 74 2.216898 GAGAGCAGAGCAAGTGTTTGT 58.783 47.619 0.00 0.00 36.65 2.83
74 75 2.216046 TGAGAGCAGAGCAAGTGTTTG 58.784 47.619 0.00 0.00 37.36 2.93
75 76 2.627515 TGAGAGCAGAGCAAGTGTTT 57.372 45.000 0.00 0.00 0.00 2.83
76 77 2.627515 TTGAGAGCAGAGCAAGTGTT 57.372 45.000 0.00 0.00 0.00 3.32
77 78 2.812591 CAATTGAGAGCAGAGCAAGTGT 59.187 45.455 0.00 0.00 34.17 3.55
78 79 2.161808 CCAATTGAGAGCAGAGCAAGTG 59.838 50.000 7.12 0.00 37.36 3.16
79 80 2.434428 CCAATTGAGAGCAGAGCAAGT 58.566 47.619 7.12 0.00 0.00 3.16
80 81 1.743958 CCCAATTGAGAGCAGAGCAAG 59.256 52.381 7.12 0.00 0.00 4.01
81 82 1.352017 TCCCAATTGAGAGCAGAGCAA 59.648 47.619 7.12 0.00 0.00 3.91
82 83 0.986527 TCCCAATTGAGAGCAGAGCA 59.013 50.000 7.12 0.00 0.00 4.26
83 84 2.220313 GATCCCAATTGAGAGCAGAGC 58.780 52.381 7.12 0.00 0.00 4.09
84 85 2.172082 TGGATCCCAATTGAGAGCAGAG 59.828 50.000 9.90 0.00 0.00 3.35
85 86 2.199208 TGGATCCCAATTGAGAGCAGA 58.801 47.619 9.90 0.00 0.00 4.26
86 87 2.723322 TGGATCCCAATTGAGAGCAG 57.277 50.000 9.90 0.00 0.00 4.24
97 98 7.287061 ACGAGATTTACATAAATTGGATCCCA 58.713 34.615 9.90 0.00 36.13 4.37
98 99 7.745620 ACGAGATTTACATAAATTGGATCCC 57.254 36.000 9.90 0.00 36.13 3.85
144 145 9.542462 CCAGATTTCAGGTATATAGAAAAACGA 57.458 33.333 0.00 0.00 35.20 3.85
145 146 8.774586 CCCAGATTTCAGGTATATAGAAAAACG 58.225 37.037 0.00 0.00 35.20 3.60
146 147 9.628500 ACCCAGATTTCAGGTATATAGAAAAAC 57.372 33.333 0.00 0.00 35.20 2.43
151 152 9.627123 CAAAAACCCAGATTTCAGGTATATAGA 57.373 33.333 0.00 0.00 32.21 1.98
152 153 9.627123 TCAAAAACCCAGATTTCAGGTATATAG 57.373 33.333 0.00 0.00 32.21 1.31
153 154 9.983024 TTCAAAAACCCAGATTTCAGGTATATA 57.017 29.630 0.00 0.00 32.21 0.86
154 155 8.893563 TTCAAAAACCCAGATTTCAGGTATAT 57.106 30.769 0.00 0.00 32.21 0.86
155 156 8.713708 TTTCAAAAACCCAGATTTCAGGTATA 57.286 30.769 0.00 0.00 32.21 1.47
156 157 7.610580 TTTCAAAAACCCAGATTTCAGGTAT 57.389 32.000 0.00 0.00 32.21 2.73
157 158 7.425224 TTTTCAAAAACCCAGATTTCAGGTA 57.575 32.000 0.00 0.00 32.21 3.08
158 159 5.948742 TTTCAAAAACCCAGATTTCAGGT 57.051 34.783 0.00 0.00 34.60 4.00
159 160 5.237127 GCTTTTCAAAAACCCAGATTTCAGG 59.763 40.000 0.00 0.00 0.00 3.86
160 161 5.237127 GGCTTTTCAAAAACCCAGATTTCAG 59.763 40.000 0.00 0.00 0.00 3.02
161 162 5.122519 GGCTTTTCAAAAACCCAGATTTCA 58.877 37.500 0.00 0.00 0.00 2.69
162 163 5.122519 TGGCTTTTCAAAAACCCAGATTTC 58.877 37.500 0.00 0.00 30.68 2.17
163 164 5.109500 TGGCTTTTCAAAAACCCAGATTT 57.891 34.783 0.00 0.00 30.68 2.17
164 165 4.769345 TGGCTTTTCAAAAACCCAGATT 57.231 36.364 0.00 0.00 30.68 2.40
165 166 4.164030 ACTTGGCTTTTCAAAAACCCAGAT 59.836 37.500 9.78 0.00 35.64 2.90
166 167 3.517500 ACTTGGCTTTTCAAAAACCCAGA 59.482 39.130 9.78 0.00 35.64 3.86
167 168 3.872696 ACTTGGCTTTTCAAAAACCCAG 58.127 40.909 0.00 1.22 35.64 4.45
168 169 3.990959 ACTTGGCTTTTCAAAAACCCA 57.009 38.095 0.00 0.00 33.10 4.51
169 170 5.414454 AGAAAACTTGGCTTTTCAAAAACCC 59.586 36.000 11.52 0.00 40.99 4.11
170 171 6.494893 AGAAAACTTGGCTTTTCAAAAACC 57.505 33.333 11.52 0.00 40.99 3.27
175 176 9.691362 GTGAATATAGAAAACTTGGCTTTTCAA 57.309 29.630 11.52 0.00 40.99 2.69
176 177 8.020819 CGTGAATATAGAAAACTTGGCTTTTCA 58.979 33.333 11.52 0.00 40.99 2.69
177 178 7.484959 CCGTGAATATAGAAAACTTGGCTTTTC 59.515 37.037 3.06 3.06 39.50 2.29
178 179 7.175990 TCCGTGAATATAGAAAACTTGGCTTTT 59.824 33.333 0.00 0.00 0.00 2.27
179 180 6.657541 TCCGTGAATATAGAAAACTTGGCTTT 59.342 34.615 0.00 0.00 0.00 3.51
180 181 6.177610 TCCGTGAATATAGAAAACTTGGCTT 58.822 36.000 0.00 0.00 0.00 4.35
181 182 5.741011 TCCGTGAATATAGAAAACTTGGCT 58.259 37.500 0.00 0.00 0.00 4.75
182 183 6.619801 ATCCGTGAATATAGAAAACTTGGC 57.380 37.500 0.00 0.00 0.00 4.52
183 184 7.067008 ACCAATCCGTGAATATAGAAAACTTGG 59.933 37.037 0.00 0.00 34.51 3.61
184 185 7.985476 ACCAATCCGTGAATATAGAAAACTTG 58.015 34.615 0.00 0.00 0.00 3.16
185 186 8.575649 AACCAATCCGTGAATATAGAAAACTT 57.424 30.769 0.00 0.00 0.00 2.66
186 187 9.326413 CTAACCAATCCGTGAATATAGAAAACT 57.674 33.333 0.00 0.00 0.00 2.66
187 188 9.321562 TCTAACCAATCCGTGAATATAGAAAAC 57.678 33.333 0.00 0.00 0.00 2.43
188 189 9.542462 CTCTAACCAATCCGTGAATATAGAAAA 57.458 33.333 0.00 0.00 0.00 2.29
189 190 8.701895 ACTCTAACCAATCCGTGAATATAGAAA 58.298 33.333 0.00 0.00 0.00 2.52
190 191 8.246430 ACTCTAACCAATCCGTGAATATAGAA 57.754 34.615 0.00 0.00 0.00 2.10
191 192 7.834881 ACTCTAACCAATCCGTGAATATAGA 57.165 36.000 0.00 0.00 0.00 1.98
192 193 7.095607 GCAACTCTAACCAATCCGTGAATATAG 60.096 40.741 0.00 0.00 0.00 1.31
193 194 6.704493 GCAACTCTAACCAATCCGTGAATATA 59.296 38.462 0.00 0.00 0.00 0.86
194 195 5.527582 GCAACTCTAACCAATCCGTGAATAT 59.472 40.000 0.00 0.00 0.00 1.28
195 196 4.873827 GCAACTCTAACCAATCCGTGAATA 59.126 41.667 0.00 0.00 0.00 1.75
196 197 3.689649 GCAACTCTAACCAATCCGTGAAT 59.310 43.478 0.00 0.00 0.00 2.57
197 198 3.071479 GCAACTCTAACCAATCCGTGAA 58.929 45.455 0.00 0.00 0.00 3.18
198 199 2.614481 GGCAACTCTAACCAATCCGTGA 60.614 50.000 0.00 0.00 0.00 4.35
199 200 1.737793 GGCAACTCTAACCAATCCGTG 59.262 52.381 0.00 0.00 0.00 4.94
200 201 1.349688 TGGCAACTCTAACCAATCCGT 59.650 47.619 0.00 0.00 37.61 4.69
201 202 2.107950 TGGCAACTCTAACCAATCCG 57.892 50.000 0.00 0.00 37.61 4.18
202 203 3.572255 TGTTTGGCAACTCTAACCAATCC 59.428 43.478 0.00 0.00 42.77 3.01
203 204 4.846779 TGTTTGGCAACTCTAACCAATC 57.153 40.909 0.00 0.00 42.77 2.67
204 205 4.892934 TCTTGTTTGGCAACTCTAACCAAT 59.107 37.500 0.00 0.00 42.77 3.16
205 206 4.274147 TCTTGTTTGGCAACTCTAACCAA 58.726 39.130 0.00 0.00 41.61 3.67
206 207 3.892284 TCTTGTTTGGCAACTCTAACCA 58.108 40.909 0.00 0.00 33.58 3.67
207 208 5.453567 AATCTTGTTTGGCAACTCTAACC 57.546 39.130 0.00 0.00 33.58 2.85
208 209 8.135529 ACTAAAATCTTGTTTGGCAACTCTAAC 58.864 33.333 0.00 0.00 33.58 2.34
209 210 8.232913 ACTAAAATCTTGTTTGGCAACTCTAA 57.767 30.769 0.00 0.00 33.58 2.10
210 211 7.817418 ACTAAAATCTTGTTTGGCAACTCTA 57.183 32.000 0.00 0.00 33.58 2.43
211 212 6.715347 ACTAAAATCTTGTTTGGCAACTCT 57.285 33.333 0.00 0.00 33.58 3.24
212 213 7.621102 CAAACTAAAATCTTGTTTGGCAACTC 58.379 34.615 0.00 0.00 43.70 3.01
213 214 7.538303 CAAACTAAAATCTTGTTTGGCAACT 57.462 32.000 0.00 0.00 43.70 3.16
224 225 9.758651 GGAAATGGTGTAACAAACTAAAATCTT 57.241 29.630 0.00 0.00 39.98 2.40
225 226 8.364894 GGGAAATGGTGTAACAAACTAAAATCT 58.635 33.333 0.00 0.00 39.98 2.40
226 227 8.364894 AGGGAAATGGTGTAACAAACTAAAATC 58.635 33.333 0.00 0.00 39.98 2.17
227 228 8.147704 CAGGGAAATGGTGTAACAAACTAAAAT 58.852 33.333 0.00 0.00 39.98 1.82
228 229 7.418025 CCAGGGAAATGGTGTAACAAACTAAAA 60.418 37.037 0.00 0.00 39.98 1.52
229 230 6.041069 CCAGGGAAATGGTGTAACAAACTAAA 59.959 38.462 0.00 0.00 39.98 1.85
230 231 5.536916 CCAGGGAAATGGTGTAACAAACTAA 59.463 40.000 0.00 0.00 39.98 2.24
231 232 5.074115 CCAGGGAAATGGTGTAACAAACTA 58.926 41.667 0.00 0.00 39.98 2.24
232 233 3.895041 CCAGGGAAATGGTGTAACAAACT 59.105 43.478 0.00 0.00 39.98 2.66
233 234 4.251543 CCAGGGAAATGGTGTAACAAAC 57.748 45.455 0.00 0.00 39.98 2.93
243 244 3.230134 TCTTCACAAACCAGGGAAATGG 58.770 45.455 0.00 0.00 46.47 3.16
244 245 4.082026 GGATCTTCACAAACCAGGGAAATG 60.082 45.833 0.00 0.00 0.00 2.32
245 246 4.089361 GGATCTTCACAAACCAGGGAAAT 58.911 43.478 0.00 0.00 0.00 2.17
246 247 3.496331 GGATCTTCACAAACCAGGGAAA 58.504 45.455 0.00 0.00 0.00 3.13
247 248 2.552155 CGGATCTTCACAAACCAGGGAA 60.552 50.000 0.00 0.00 0.00 3.97
248 249 1.003118 CGGATCTTCACAAACCAGGGA 59.997 52.381 0.00 0.00 0.00 4.20
249 250 1.453155 CGGATCTTCACAAACCAGGG 58.547 55.000 0.00 0.00 0.00 4.45
250 251 1.271379 ACCGGATCTTCACAAACCAGG 60.271 52.381 9.46 0.00 0.00 4.45
251 252 2.185004 ACCGGATCTTCACAAACCAG 57.815 50.000 9.46 0.00 0.00 4.00
252 253 2.649531 AACCGGATCTTCACAAACCA 57.350 45.000 9.46 0.00 0.00 3.67
253 254 3.638484 CAAAACCGGATCTTCACAAACC 58.362 45.455 9.46 0.00 0.00 3.27
254 255 3.049912 GCAAAACCGGATCTTCACAAAC 58.950 45.455 9.46 0.00 0.00 2.93
255 256 2.690497 TGCAAAACCGGATCTTCACAAA 59.310 40.909 9.46 0.00 0.00 2.83
256 257 2.302260 TGCAAAACCGGATCTTCACAA 58.698 42.857 9.46 0.00 0.00 3.33
257 258 1.974265 TGCAAAACCGGATCTTCACA 58.026 45.000 9.46 0.00 0.00 3.58
258 259 4.900635 ATATGCAAAACCGGATCTTCAC 57.099 40.909 9.46 0.00 0.00 3.18
259 260 5.527214 CAGTATATGCAAAACCGGATCTTCA 59.473 40.000 9.46 0.00 0.00 3.02
260 261 5.990408 CAGTATATGCAAAACCGGATCTTC 58.010 41.667 9.46 0.00 0.00 2.87
275 276 5.334105 GCGTTGTTTGGATAGGCAGTATATG 60.334 44.000 0.00 0.00 0.00 1.78
276 277 4.755123 GCGTTGTTTGGATAGGCAGTATAT 59.245 41.667 0.00 0.00 0.00 0.86
277 278 4.124238 GCGTTGTTTGGATAGGCAGTATA 58.876 43.478 0.00 0.00 0.00 1.47
278 279 2.943033 GCGTTGTTTGGATAGGCAGTAT 59.057 45.455 0.00 0.00 0.00 2.12
279 280 2.352388 GCGTTGTTTGGATAGGCAGTA 58.648 47.619 0.00 0.00 0.00 2.74
280 281 1.165270 GCGTTGTTTGGATAGGCAGT 58.835 50.000 0.00 0.00 0.00 4.40
281 282 0.451783 GGCGTTGTTTGGATAGGCAG 59.548 55.000 0.00 0.00 0.00 4.85
282 283 0.037590 AGGCGTTGTTTGGATAGGCA 59.962 50.000 0.00 0.00 0.00 4.75
283 284 2.032680 TAGGCGTTGTTTGGATAGGC 57.967 50.000 0.00 0.00 0.00 3.93
284 285 4.007659 ACTTTAGGCGTTGTTTGGATAGG 58.992 43.478 0.00 0.00 0.00 2.57
285 286 6.730960 TTACTTTAGGCGTTGTTTGGATAG 57.269 37.500 0.00 0.00 0.00 2.08
286 287 6.879993 TGATTACTTTAGGCGTTGTTTGGATA 59.120 34.615 0.00 0.00 0.00 2.59
287 288 5.708230 TGATTACTTTAGGCGTTGTTTGGAT 59.292 36.000 0.00 0.00 0.00 3.41
288 289 5.049267 GTGATTACTTTAGGCGTTGTTTGGA 60.049 40.000 0.00 0.00 0.00 3.53
289 290 5.151389 GTGATTACTTTAGGCGTTGTTTGG 58.849 41.667 0.00 0.00 0.00 3.28
290 291 4.843984 CGTGATTACTTTAGGCGTTGTTTG 59.156 41.667 0.00 0.00 0.00 2.93
291 292 4.512571 ACGTGATTACTTTAGGCGTTGTTT 59.487 37.500 0.00 0.00 0.00 2.83
292 293 4.060205 ACGTGATTACTTTAGGCGTTGTT 58.940 39.130 0.00 0.00 0.00 2.83
293 294 3.656559 ACGTGATTACTTTAGGCGTTGT 58.343 40.909 0.00 0.00 0.00 3.32
294 295 3.676172 TGACGTGATTACTTTAGGCGTTG 59.324 43.478 0.00 0.00 0.00 4.10
295 296 3.676646 GTGACGTGATTACTTTAGGCGTT 59.323 43.478 0.00 0.00 0.00 4.84
296 297 3.248266 GTGACGTGATTACTTTAGGCGT 58.752 45.455 0.00 0.00 0.00 5.68
297 298 2.601763 GGTGACGTGATTACTTTAGGCG 59.398 50.000 0.00 0.00 0.00 5.52
298 299 3.592059 TGGTGACGTGATTACTTTAGGC 58.408 45.455 0.00 0.00 0.00 3.93
299 300 4.809426 GGATGGTGACGTGATTACTTTAGG 59.191 45.833 0.00 0.00 0.00 2.69
300 301 5.416083 TGGATGGTGACGTGATTACTTTAG 58.584 41.667 0.00 0.00 0.00 1.85
301 302 5.408880 TGGATGGTGACGTGATTACTTTA 57.591 39.130 0.00 0.00 0.00 1.85
302 303 4.280436 TGGATGGTGACGTGATTACTTT 57.720 40.909 0.00 0.00 0.00 2.66
303 304 3.973206 TGGATGGTGACGTGATTACTT 57.027 42.857 0.00 0.00 0.00 2.24
304 305 4.487714 AATGGATGGTGACGTGATTACT 57.512 40.909 0.00 0.00 0.00 2.24
305 306 5.106317 ACAAAATGGATGGTGACGTGATTAC 60.106 40.000 0.00 0.00 0.00 1.89
306 307 5.007034 ACAAAATGGATGGTGACGTGATTA 58.993 37.500 0.00 0.00 0.00 1.75
307 308 3.826157 ACAAAATGGATGGTGACGTGATT 59.174 39.130 0.00 0.00 0.00 2.57
308 309 3.420893 ACAAAATGGATGGTGACGTGAT 58.579 40.909 0.00 0.00 0.00 3.06
309 310 2.857483 ACAAAATGGATGGTGACGTGA 58.143 42.857 0.00 0.00 0.00 4.35
310 311 3.641437 AACAAAATGGATGGTGACGTG 57.359 42.857 0.00 0.00 0.00 4.49
311 312 3.504520 GGTAACAAAATGGATGGTGACGT 59.495 43.478 0.00 0.00 0.00 4.34
312 313 3.425625 CGGTAACAAAATGGATGGTGACG 60.426 47.826 0.00 0.00 0.00 4.35
313 314 3.504520 ACGGTAACAAAATGGATGGTGAC 59.495 43.478 0.00 0.00 0.00 3.67
314 315 3.754323 GACGGTAACAAAATGGATGGTGA 59.246 43.478 0.00 0.00 0.00 4.02
315 316 3.425625 CGACGGTAACAAAATGGATGGTG 60.426 47.826 0.00 0.00 0.00 4.17
316 317 2.745281 CGACGGTAACAAAATGGATGGT 59.255 45.455 0.00 0.00 0.00 3.55
317 318 2.096819 CCGACGGTAACAAAATGGATGG 59.903 50.000 5.48 0.00 0.00 3.51
318 319 2.477189 GCCGACGGTAACAAAATGGATG 60.477 50.000 16.73 0.00 0.00 3.51
319 320 1.741145 GCCGACGGTAACAAAATGGAT 59.259 47.619 16.73 0.00 0.00 3.41
320 321 1.158434 GCCGACGGTAACAAAATGGA 58.842 50.000 16.73 0.00 0.00 3.41
321 322 0.875728 TGCCGACGGTAACAAAATGG 59.124 50.000 16.73 0.00 0.00 3.16
322 323 2.690173 TTGCCGACGGTAACAAAATG 57.310 45.000 13.79 0.00 0.00 2.32
323 324 3.634283 CTTTTGCCGACGGTAACAAAAT 58.366 40.909 22.70 0.00 40.20 1.82
324 325 2.795331 GCTTTTGCCGACGGTAACAAAA 60.795 45.455 17.48 20.14 39.09 2.44
325 326 1.268640 GCTTTTGCCGACGGTAACAAA 60.269 47.619 17.48 14.54 40.15 2.83
326 327 0.308376 GCTTTTGCCGACGGTAACAA 59.692 50.000 17.48 9.06 40.15 2.83
327 328 0.814410 TGCTTTTGCCGACGGTAACA 60.814 50.000 17.48 10.17 46.87 2.41
328 329 0.519961 ATGCTTTTGCCGACGGTAAC 59.480 50.000 17.48 6.87 46.87 2.50
329 330 0.519519 CATGCTTTTGCCGACGGTAA 59.480 50.000 13.79 13.79 46.87 2.85
330 331 1.302383 CCATGCTTTTGCCGACGGTA 61.302 55.000 16.73 8.50 46.87 4.02
331 332 2.625823 CCATGCTTTTGCCGACGGT 61.626 57.895 16.73 0.00 46.87 4.83
332 333 2.179018 CCATGCTTTTGCCGACGG 59.821 61.111 10.29 10.29 46.87 4.79
333 334 1.442520 CACCATGCTTTTGCCGACG 60.443 57.895 0.00 0.00 46.87 5.12
334 335 1.080569 CCACCATGCTTTTGCCGAC 60.081 57.895 0.00 0.00 46.87 4.79
335 336 2.929903 GCCACCATGCTTTTGCCGA 61.930 57.895 0.00 0.00 46.87 5.54
336 337 2.432972 GCCACCATGCTTTTGCCG 60.433 61.111 0.00 0.00 46.87 5.69
337 338 0.534652 TTTGCCACCATGCTTTTGCC 60.535 50.000 0.00 0.00 46.87 4.52
338 339 4.574443 GCATTTGCCACCATGCTTTTGC 62.574 50.000 1.52 0.00 42.25 3.68
339 340 1.198178 GCATTTGCCACCATGCTTTTG 59.802 47.619 1.52 0.00 42.25 2.44
340 341 1.525941 GCATTTGCCACCATGCTTTT 58.474 45.000 1.52 0.00 42.25 2.27
341 342 0.671163 CGCATTTGCCACCATGCTTT 60.671 50.000 6.50 0.00 43.17 3.51
342 343 1.079681 CGCATTTGCCACCATGCTT 60.080 52.632 6.50 0.00 43.17 3.91
343 344 2.277591 ACGCATTTGCCACCATGCT 61.278 52.632 6.50 0.00 43.17 3.79
344 345 2.095847 CACGCATTTGCCACCATGC 61.096 57.895 0.00 0.00 42.12 4.06
345 346 2.095847 GCACGCATTTGCCACCATG 61.096 57.895 0.00 0.00 36.42 3.66
346 347 2.262292 GCACGCATTTGCCACCAT 59.738 55.556 0.00 0.00 36.42 3.55
347 348 2.911509 AGCACGCATTTGCCACCA 60.912 55.556 0.00 0.00 44.14 4.17
348 349 2.431260 CAGCACGCATTTGCCACC 60.431 61.111 0.00 0.00 44.14 4.61
349 350 2.431260 CCAGCACGCATTTGCCAC 60.431 61.111 0.00 0.00 44.14 5.01
350 351 4.360964 GCCAGCACGCATTTGCCA 62.361 61.111 0.00 0.00 44.14 4.92
352 353 3.976902 GAGGCCAGCACGCATTTGC 62.977 63.158 5.01 0.00 43.34 3.68
440 441 9.999660 GGTTTTGTGGGGTTCTTTTTATTATTA 57.000 29.630 0.00 0.00 0.00 0.98
443 444 7.093024 TGTGGTTTTGTGGGGTTCTTTTTATTA 60.093 33.333 0.00 0.00 0.00 0.98
447 448 3.328050 TGTGGTTTTGTGGGGTTCTTTTT 59.672 39.130 0.00 0.00 0.00 1.94
494 495 2.359850 CACGTGGTGGTCCCCATG 60.360 66.667 7.95 14.06 45.37 3.66
501 502 2.046314 GGCATAGCACGTGGTGGT 60.046 61.111 29.36 15.34 46.27 4.16
530 531 1.795170 CGTGGTTTTGCTGGGTCTGG 61.795 60.000 0.00 0.00 0.00 3.86
531 532 0.817634 TCGTGGTTTTGCTGGGTCTG 60.818 55.000 0.00 0.00 0.00 3.51
532 533 0.818040 GTCGTGGTTTTGCTGGGTCT 60.818 55.000 0.00 0.00 0.00 3.85
533 534 1.098712 TGTCGTGGTTTTGCTGGGTC 61.099 55.000 0.00 0.00 0.00 4.46
534 535 0.467290 ATGTCGTGGTTTTGCTGGGT 60.467 50.000 0.00 0.00 0.00 4.51
535 536 0.673437 AATGTCGTGGTTTTGCTGGG 59.327 50.000 0.00 0.00 0.00 4.45
536 537 2.223688 TGAAATGTCGTGGTTTTGCTGG 60.224 45.455 0.00 0.00 0.00 4.85
547 548 7.434013 GGAGTGTTTTGTATTTTGAAATGTCGT 59.566 33.333 0.00 0.00 0.00 4.34
549 550 7.096230 CGGGAGTGTTTTGTATTTTGAAATGTC 60.096 37.037 0.00 0.00 0.00 3.06
556 557 2.977169 CGCGGGAGTGTTTTGTATTTTG 59.023 45.455 0.00 0.00 35.16 2.44
614 615 2.204401 GGGGGAAGGGGAAGGGAA 60.204 66.667 0.00 0.00 0.00 3.97
657 658 0.461961 TTTGGTGTTTTTCCGCTGGG 59.538 50.000 0.00 0.00 0.00 4.45
658 659 1.566404 GTTTGGTGTTTTTCCGCTGG 58.434 50.000 0.00 0.00 0.00 4.85
660 661 0.101579 CCGTTTGGTGTTTTTCCGCT 59.898 50.000 0.00 0.00 0.00 5.52
661 662 0.100861 TCCGTTTGGTGTTTTTCCGC 59.899 50.000 0.00 0.00 36.30 5.54
663 664 2.542597 GGTTCCGTTTGGTGTTTTTCC 58.457 47.619 0.00 0.00 36.30 3.13
665 666 1.135053 CCGGTTCCGTTTGGTGTTTTT 60.135 47.619 10.36 0.00 36.30 1.94
666 667 0.456628 CCGGTTCCGTTTGGTGTTTT 59.543 50.000 10.36 0.00 36.30 2.43
667 668 2.007113 GCCGGTTCCGTTTGGTGTTT 62.007 55.000 1.90 0.00 36.30 2.83
668 669 2.483197 GCCGGTTCCGTTTGGTGTT 61.483 57.895 1.90 0.00 36.30 3.32
670 671 4.020378 CGCCGGTTCCGTTTGGTG 62.020 66.667 1.90 0.00 36.30 4.17
747 751 1.303317 TTTCCTTTCCCTCGCCTGC 60.303 57.895 0.00 0.00 0.00 4.85
748 752 0.678048 CCTTTCCTTTCCCTCGCCTG 60.678 60.000 0.00 0.00 0.00 4.85
749 753 0.840722 TCCTTTCCTTTCCCTCGCCT 60.841 55.000 0.00 0.00 0.00 5.52
750 754 0.037734 TTCCTTTCCTTTCCCTCGCC 59.962 55.000 0.00 0.00 0.00 5.54
752 756 2.039879 TCCTTTCCTTTCCTTTCCCTCG 59.960 50.000 0.00 0.00 0.00 4.63
754 758 4.483950 CTTTCCTTTCCTTTCCTTTCCCT 58.516 43.478 0.00 0.00 0.00 4.20
755 759 3.578716 CCTTTCCTTTCCTTTCCTTTCCC 59.421 47.826 0.00 0.00 0.00 3.97
756 760 4.480115 TCCTTTCCTTTCCTTTCCTTTCC 58.520 43.478 0.00 0.00 0.00 3.13
757 761 6.463049 CCTTTCCTTTCCTTTCCTTTCCTTTC 60.463 42.308 0.00 0.00 0.00 2.62
758 762 5.366768 CCTTTCCTTTCCTTTCCTTTCCTTT 59.633 40.000 0.00 0.00 0.00 3.11
759 763 4.901849 CCTTTCCTTTCCTTTCCTTTCCTT 59.098 41.667 0.00 0.00 0.00 3.36
760 764 4.170053 TCCTTTCCTTTCCTTTCCTTTCCT 59.830 41.667 0.00 0.00 0.00 3.36
761 765 4.480115 TCCTTTCCTTTCCTTTCCTTTCC 58.520 43.478 0.00 0.00 0.00 3.13
762 766 6.463049 CCTTTCCTTTCCTTTCCTTTCCTTTC 60.463 42.308 0.00 0.00 0.00 2.62
763 767 5.366768 CCTTTCCTTTCCTTTCCTTTCCTTT 59.633 40.000 0.00 0.00 0.00 3.11
764 768 4.901849 CCTTTCCTTTCCTTTCCTTTCCTT 59.098 41.667 0.00 0.00 0.00 3.36
765 769 4.170053 TCCTTTCCTTTCCTTTCCTTTCCT 59.830 41.667 0.00 0.00 0.00 3.36
766 770 4.480115 TCCTTTCCTTTCCTTTCCTTTCC 58.520 43.478 0.00 0.00 0.00 3.13
767 771 5.509840 GCTTCCTTTCCTTTCCTTTCCTTTC 60.510 44.000 0.00 0.00 0.00 2.62
768 772 4.345257 GCTTCCTTTCCTTTCCTTTCCTTT 59.655 41.667 0.00 0.00 0.00 3.11
769 773 3.898123 GCTTCCTTTCCTTTCCTTTCCTT 59.102 43.478 0.00 0.00 0.00 3.36
770 774 3.501349 GCTTCCTTTCCTTTCCTTTCCT 58.499 45.455 0.00 0.00 0.00 3.36
838 842 2.094066 GGCGGCAGCGAAATTTTGG 61.094 57.895 3.07 0.00 46.35 3.28
862 876 2.224892 GGAGGATGGATTTAAGGGAGGC 60.225 54.545 0.00 0.00 0.00 4.70
881 895 3.114825 GCGGGATGGGGAAATCGGA 62.115 63.158 0.00 0.00 0.00 4.55
920 934 1.669760 GTGGTGGACGGATTCGCAA 60.670 57.895 0.00 0.00 40.63 4.85
922 936 1.429148 GATGTGGTGGACGGATTCGC 61.429 60.000 0.00 0.00 40.63 4.70
925 939 1.449601 GCGATGTGGTGGACGGATT 60.450 57.895 0.00 0.00 0.00 3.01
926 940 2.186903 GCGATGTGGTGGACGGAT 59.813 61.111 0.00 0.00 0.00 4.18
927 941 4.429212 CGCGATGTGGTGGACGGA 62.429 66.667 0.00 0.00 0.00 4.69
936 950 4.505217 GACTTGCGGCGCGATGTG 62.505 66.667 28.09 16.08 0.00 3.21
970 984 3.288308 AACCGCTCTCTCGTGCAGG 62.288 63.158 0.00 0.00 33.07 4.85
972 986 2.049156 CAACCGCTCTCTCGTGCA 60.049 61.111 0.00 0.00 0.00 4.57
973 987 3.482783 GCAACCGCTCTCTCGTGC 61.483 66.667 0.00 0.00 34.30 5.34
974 988 3.175240 CGCAACCGCTCTCTCGTG 61.175 66.667 0.00 0.00 35.30 4.35
1115 1132 4.856607 CGTCGGCCTTCTCCTCGC 62.857 72.222 0.00 0.00 0.00 5.03
1116 1133 3.441290 ACGTCGGCCTTCTCCTCG 61.441 66.667 0.00 0.00 0.00 4.63
1164 1181 1.513622 GAGACGCCTGAAGACCTCC 59.486 63.158 0.00 0.00 0.00 4.30
1377 1394 4.796231 ACGAGGATGACGCCGCAC 62.796 66.667 0.00 0.00 0.00 5.34
1524 1541 4.762825 GTGTGGCAGAACACCGTA 57.237 55.556 5.50 0.00 43.84 4.02
1563 1580 2.672307 ACGAGGACGCGGAACTCT 60.672 61.111 12.47 0.00 43.96 3.24
1615 1632 6.402222 ACGAAGCAGAAGAGTAAATGAGAAT 58.598 36.000 0.00 0.00 0.00 2.40
1623 1640 2.352814 GGCAGACGAAGCAGAAGAGTAA 60.353 50.000 0.00 0.00 0.00 2.24
1635 1652 2.203788 ACCTCCCAGGCAGACGAA 60.204 61.111 0.00 0.00 39.63 3.85
1636 1653 2.680352 GACCTCCCAGGCAGACGA 60.680 66.667 0.00 0.00 39.63 4.20
1638 1655 4.459089 GCGACCTCCCAGGCAGAC 62.459 72.222 0.00 0.00 39.63 3.51
1717 1734 1.542544 GACGGTAGCATGTACACGAC 58.457 55.000 0.00 0.00 0.00 4.34
1719 1736 0.864377 CGGACGGTAGCATGTACACG 60.864 60.000 0.00 0.00 0.00 4.49
1735 1752 0.626382 TATTTGGGGTTGGCATCGGA 59.374 50.000 0.00 0.00 0.00 4.55
1762 1779 0.396435 ATCTTGGCCGTGTTGACAGA 59.604 50.000 0.00 0.00 0.00 3.41
1767 1784 1.875963 GGTCATCTTGGCCGTGTTG 59.124 57.895 0.00 0.00 29.54 3.33
1824 1841 0.250124 TCCAGTTGTTGCCGGTGTAG 60.250 55.000 1.90 0.00 0.00 2.74
1852 1869 3.063084 GAGACGGCCGTCCTCTGT 61.063 66.667 45.66 31.82 45.59 3.41
1854 1871 2.752238 CAGAGACGGCCGTCCTCT 60.752 66.667 45.66 39.39 45.59 3.69
1866 1883 2.079158 CGGATTGCAAAGAAGCAGAGA 58.921 47.619 1.71 0.00 46.54 3.10
1890 1907 0.613012 ATTTCACCAGAAGCAGGGGC 60.613 55.000 0.00 0.00 41.61 5.80
1892 1909 1.180029 CCATTTCACCAGAAGCAGGG 58.820 55.000 0.00 0.00 34.71 4.45
1923 1940 3.998672 GGCGTCCACGTCCTTGGA 61.999 66.667 0.36 0.00 43.83 3.53
1954 1971 1.078285 TCATCAGCTGCCGCAATGA 60.078 52.632 9.47 9.90 37.88 2.57
2061 2078 3.636231 CCCTCGCAGAACCCACCA 61.636 66.667 0.00 0.00 34.09 4.17
2110 2127 1.234615 ATGTCAAGCGAAACCACCCG 61.235 55.000 0.00 0.00 0.00 5.28
2139 2156 1.607509 CGCCATAGCCTCTCCATCTTG 60.608 57.143 0.00 0.00 34.57 3.02
2159 2176 0.179205 CCTCCACTCGTCGTCGTTAC 60.179 60.000 1.33 0.00 38.33 2.50
2160 2177 1.915614 GCCTCCACTCGTCGTCGTTA 61.916 60.000 1.33 0.00 38.33 3.18
2191 2208 1.101331 ACCATCTCGTACGGGAAGAC 58.899 55.000 23.70 0.00 0.00 3.01
2195 2212 2.420568 GCCACCATCTCGTACGGGA 61.421 63.158 22.05 22.05 0.00 5.14
2199 2216 1.518572 CCACGCCACCATCTCGTAC 60.519 63.158 0.00 0.00 34.81 3.67
2270 2287 1.590238 CTACAGTAATCAGCACGCAGC 59.410 52.381 0.00 0.00 46.19 5.25
2300 2317 0.319900 CCTTCTCACTGACACCACCG 60.320 60.000 0.00 0.00 0.00 4.94
2326 2343 8.799091 CAAACTCGACTGTAATACTGAACATAG 58.201 37.037 4.30 2.42 0.00 2.23
2357 2375 5.587388 ACCACATTTCAAGCATATCCAAG 57.413 39.130 0.00 0.00 0.00 3.61
2364 2382 8.970020 TCATTATCTTTACCACATTTCAAGCAT 58.030 29.630 0.00 0.00 0.00 3.79
2365 2383 8.347004 TCATTATCTTTACCACATTTCAAGCA 57.653 30.769 0.00 0.00 0.00 3.91
2374 2392 9.693739 ACCACAAATATCATTATCTTTACCACA 57.306 29.630 0.00 0.00 0.00 4.17
2377 2395 9.463443 GCAACCACAAATATCATTATCTTTACC 57.537 33.333 0.00 0.00 0.00 2.85
2422 2440 6.369059 AGACAATTTCATTGGATCATCGAC 57.631 37.500 0.00 0.00 44.42 4.20
2443 2461 8.975439 GTAACTGAAACAGAACGAATCTAAAGA 58.025 33.333 5.76 0.00 36.32 2.52
2444 2462 8.221766 GGTAACTGAAACAGAACGAATCTAAAG 58.778 37.037 5.76 0.00 36.32 1.85
2491 2509 4.492611 TGCTAATTGCGCAATTCATTTGA 58.507 34.783 42.44 26.89 46.63 2.69
2503 2521 3.680642 ATTACTGCAGTGCTAATTGCG 57.319 42.857 29.57 0.00 46.63 4.85
2513 2531 7.634671 TCATTTGATGATCAATTACTGCAGT 57.365 32.000 25.12 25.12 36.11 4.40
2559 2578 7.517734 CGGTTATGTAGCTGCAATAATAAACGT 60.518 37.037 19.06 1.64 36.46 3.99
2562 2581 8.439993 TTCGGTTATGTAGCTGCAATAATAAA 57.560 30.769 9.07 0.00 0.00 1.40
2575 2594 7.011950 TGCATCCATACTTTTTCGGTTATGTAG 59.988 37.037 0.00 0.00 0.00 2.74
2627 2646 9.520204 CATAAGTGGTCAAAATGATAATGTTCC 57.480 33.333 0.00 0.00 0.00 3.62
2655 2675 0.313672 GGTTCGTGCAATTTGCTCCA 59.686 50.000 21.19 4.86 45.31 3.86
2752 2773 5.779922 ACTAGTAGAGCACGTCATTTTCAA 58.220 37.500 3.59 0.00 0.00 2.69
2756 2777 6.864342 ACAATACTAGTAGAGCACGTCATTT 58.136 36.000 8.85 0.00 0.00 2.32
2762 2783 4.735822 GCTTGACAATACTAGTAGAGCACG 59.264 45.833 8.85 3.53 31.29 5.34
2766 2787 5.895928 TGCTGCTTGACAATACTAGTAGAG 58.104 41.667 8.85 5.85 30.53 2.43
2767 2788 5.163509 CCTGCTGCTTGACAATACTAGTAGA 60.164 44.000 8.85 0.00 30.53 2.59
2768 2789 5.046529 CCTGCTGCTTGACAATACTAGTAG 58.953 45.833 8.85 0.00 0.00 2.57
2793 2814 1.774254 TCAGGAACCTTGAAGCTGGAA 59.226 47.619 0.00 0.00 0.00 3.53
2849 2878 3.254657 AGCACTAGTATCGATCTTGCCTC 59.745 47.826 0.00 0.00 0.00 4.70
2895 2924 4.615961 CAGTACAAGTACTACAGCAACGAC 59.384 45.833 12.17 0.00 43.98 4.34
2897 2926 3.364023 GCAGTACAAGTACTACAGCAACG 59.636 47.826 12.17 0.18 43.98 4.10
2898 2927 4.150098 GTGCAGTACAAGTACTACAGCAAC 59.850 45.833 19.15 12.69 43.98 4.17
2900 2929 3.610821 CGTGCAGTACAAGTACTACAGCA 60.611 47.826 15.60 15.60 43.98 4.41
2901 2930 2.915463 CGTGCAGTACAAGTACTACAGC 59.085 50.000 12.35 12.10 43.98 4.40
2902 2931 3.057736 ACCGTGCAGTACAAGTACTACAG 60.058 47.826 12.35 6.09 43.98 2.74
2903 2932 2.886523 ACCGTGCAGTACAAGTACTACA 59.113 45.455 12.17 10.39 43.98 2.74
2904 2933 3.565905 ACCGTGCAGTACAAGTACTAC 57.434 47.619 12.17 7.95 43.98 2.73
2905 2934 6.994496 AGATATACCGTGCAGTACAAGTACTA 59.006 38.462 12.17 0.00 43.98 1.82
2906 2935 5.826737 AGATATACCGTGCAGTACAAGTACT 59.173 40.000 7.05 7.05 46.52 2.73
2907 2936 6.069684 AGATATACCGTGCAGTACAAGTAC 57.930 41.667 2.18 2.18 36.35 2.73
2908 2937 6.319405 TGAAGATATACCGTGCAGTACAAGTA 59.681 38.462 0.00 0.00 0.00 2.24
2909 2938 5.126545 TGAAGATATACCGTGCAGTACAAGT 59.873 40.000 0.00 0.00 0.00 3.16
2910 2939 5.588240 TGAAGATATACCGTGCAGTACAAG 58.412 41.667 0.00 0.00 0.00 3.16
2912 2941 5.508994 CCATGAAGATATACCGTGCAGTACA 60.509 44.000 0.00 0.00 0.00 2.90
2913 2942 4.923871 CCATGAAGATATACCGTGCAGTAC 59.076 45.833 0.00 0.00 0.00 2.73
2915 2944 3.388024 ACCATGAAGATATACCGTGCAGT 59.612 43.478 0.00 0.00 0.00 4.40
2916 2945 3.995199 ACCATGAAGATATACCGTGCAG 58.005 45.455 0.00 0.00 0.00 4.41
2918 2947 3.498397 CCAACCATGAAGATATACCGTGC 59.502 47.826 0.00 0.00 0.00 5.34
2919 2948 4.703897 ACCAACCATGAAGATATACCGTG 58.296 43.478 0.00 0.00 0.00 4.94
2924 2953 9.913310 TGACAATAAACCAACCATGAAGATATA 57.087 29.630 0.00 0.00 0.00 0.86
2932 2975 8.152309 ACAAATTTGACAATAAACCAACCATG 57.848 30.769 24.64 0.00 0.00 3.66
3061 3155 6.402118 GCTGCTGTCTTATCGATTGTGTTAAA 60.402 38.462 1.71 0.00 0.00 1.52
3065 3159 2.932614 GCTGCTGTCTTATCGATTGTGT 59.067 45.455 1.71 0.00 0.00 3.72
3066 3160 2.286294 GGCTGCTGTCTTATCGATTGTG 59.714 50.000 1.71 0.00 0.00 3.33
3071 3165 2.103373 AGAAGGCTGCTGTCTTATCGA 58.897 47.619 10.69 0.00 38.38 3.59
3082 3226 4.022849 AGTGTAATTTTGACAGAAGGCTGC 60.023 41.667 0.00 0.00 46.26 5.25
3126 3270 2.367241 TCCCGTGTCACATGAAAGAAGA 59.633 45.455 0.00 0.00 0.00 2.87
3135 3279 0.884704 GTGCTTGTCCCGTGTCACAT 60.885 55.000 3.42 0.00 0.00 3.21
3136 3280 1.522806 GTGCTTGTCCCGTGTCACA 60.523 57.895 3.42 0.00 0.00 3.58
3141 3285 2.709125 TTCCTCGTGCTTGTCCCGTG 62.709 60.000 0.00 0.00 0.00 4.94
3144 3288 0.951040 CTGTTCCTCGTGCTTGTCCC 60.951 60.000 0.00 0.00 0.00 4.46
3145 3289 1.569479 GCTGTTCCTCGTGCTTGTCC 61.569 60.000 0.00 0.00 0.00 4.02
3149 3293 1.203523 CTAGAGCTGTTCCTCGTGCTT 59.796 52.381 0.00 0.00 36.95 3.91
3166 3310 6.909550 ATCTTATAGACTGTTGGAGCCTAG 57.090 41.667 0.00 0.00 0.00 3.02
3199 3343 4.407365 TGAAGGTGTCTAGTCATGTCAGA 58.593 43.478 0.00 0.00 0.00 3.27
3212 3356 4.992688 TGTTGTTCATTGTTGAAGGTGTC 58.007 39.130 0.00 0.00 42.41 3.67
3222 3366 3.134442 ACCCATGCTTTGTTGTTCATTGT 59.866 39.130 0.00 0.00 0.00 2.71
3235 3379 0.995024 ACTTGCTCCTACCCATGCTT 59.005 50.000 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.