Multiple sequence alignment - TraesCS4B01G058200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G058200 chr4B 100.000 3821 0 0 1 3821 48990599 48994419 0.000000e+00 7057.0
1 TraesCS4B01G058200 chr4B 94.667 225 12 0 3597 3821 663723465 663723241 2.180000e-92 350.0
2 TraesCS4B01G058200 chr4B 94.273 227 11 2 3597 3821 590368886 590368660 2.830000e-91 346.0
3 TraesCS4B01G058200 chr4A 92.047 2867 121 43 769 3596 568192685 568195483 0.000000e+00 3932.0
4 TraesCS4B01G058200 chr4A 81.395 516 37 29 1 499 568192029 568192502 2.170000e-97 366.0
5 TraesCS4B01G058200 chr4A 95.111 225 11 0 3597 3821 737298750 737298526 4.690000e-94 355.0
6 TraesCS4B01G058200 chr4A 94.667 225 12 0 3597 3821 691286250 691286474 2.180000e-92 350.0
7 TraesCS4B01G058200 chr4D 92.055 2530 101 30 691 3197 34088783 34091235 0.000000e+00 3467.0
8 TraesCS4B01G058200 chr4D 83.974 468 44 20 116 557 34088320 34088782 1.640000e-113 420.0
9 TraesCS4B01G058200 chr4D 89.041 292 11 4 3313 3594 34091284 34091564 3.660000e-90 342.0
10 TraesCS4B01G058200 chr3B 96.000 225 9 0 3597 3821 260865120 260864896 2.170000e-97 366.0
11 TraesCS4B01G058200 chr3B 84.034 119 11 7 1059 1173 99500820 99500934 1.450000e-19 108.0
12 TraesCS4B01G058200 chr5B 95.556 225 10 0 3597 3821 271100955 271100731 1.010000e-95 361.0
13 TraesCS4B01G058200 chr2B 95.556 225 10 0 3597 3821 791703335 791703559 1.010000e-95 361.0
14 TraesCS4B01G058200 chr7B 95.089 224 11 0 3598 3821 320320950 320320727 1.690000e-93 353.0
15 TraesCS4B01G058200 chr1B 94.323 229 13 0 3593 3821 563062527 563062755 6.070000e-93 351.0
16 TraesCS4B01G058200 chr2D 72.635 687 146 32 1958 2629 505815778 505816437 5.040000e-44 189.0
17 TraesCS4B01G058200 chr2D 81.356 118 18 4 1060 1175 505814510 505814625 4.060000e-15 93.5
18 TraesCS4B01G058200 chr2A 78.571 154 28 5 1024 1175 650243642 650243792 3.140000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G058200 chr4B 48990599 48994419 3820 False 7057.000000 7057 100.000000 1 3821 1 chr4B.!!$F1 3820
1 TraesCS4B01G058200 chr4A 568192029 568195483 3454 False 2149.000000 3932 86.721000 1 3596 2 chr4A.!!$F2 3595
2 TraesCS4B01G058200 chr4D 34088320 34091564 3244 False 1409.666667 3467 88.356667 116 3594 3 chr4D.!!$F1 3478

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
654 720 0.116342 TGGGCTGGAGAGAACCACTA 59.884 55.0 0.0 0.0 35.91 2.74 F
665 731 0.165295 GAACCACTACGCCTTTTCGC 59.835 55.0 0.0 0.0 0.00 4.70 F
756 822 0.388649 AGCTCCGCTTCTTGTACACG 60.389 55.0 0.0 0.0 33.89 4.49 F
1722 1808 0.591170 ACATTTTTCTCCACGCCACG 59.409 50.0 0.0 0.0 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1516 1598 1.675641 GAACCTCGCCAATGCCTGT 60.676 57.895 0.0 0.0 0.00 4.00 R
2661 2753 0.251653 TCTGCACGAACTCCCCTAGT 60.252 55.000 0.0 0.0 41.49 2.57 R
2664 2756 2.584391 GGTCTGCACGAACTCCCCT 61.584 63.158 0.0 0.0 0.00 4.79 R
3118 3221 0.034337 GCGAACAACTGGGGTACTCA 59.966 55.000 0.0 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 47 4.766404 AAGTTGCATAAGTACACCAAGC 57.234 40.909 0.00 0.00 0.00 4.01
51 54 4.331717 GCATAAGTACACCAAGCACGTATT 59.668 41.667 0.00 0.00 0.00 1.89
91 99 1.203100 AGAAAGCCAAATCCAGCAGGT 60.203 47.619 0.00 0.00 35.89 4.00
95 103 1.075374 AGCCAAATCCAGCAGGTGTAA 59.925 47.619 0.00 0.00 35.89 2.41
102 110 1.374631 CAGCAGGTGTAAGCGAGCA 60.375 57.895 0.00 0.00 41.47 4.26
157 165 4.058124 TGTCTCATTCTTTTCCTGTGTCG 58.942 43.478 0.00 0.00 0.00 4.35
161 169 2.910688 TTCTTTTCCTGTGTCGCTCT 57.089 45.000 0.00 0.00 0.00 4.09
165 173 3.057456 TCTTTTCCTGTGTCGCTCTAGTC 60.057 47.826 0.00 0.00 0.00 2.59
181 189 3.889044 TCGATCCTGTCTCGCGCC 61.889 66.667 0.00 0.00 36.11 6.53
184 192 3.492311 GATCCTGTCTCGCGCCTCC 62.492 68.421 0.00 0.00 0.00 4.30
210 218 1.303561 GGCTGGCTTGTCCACATCA 60.304 57.895 0.00 0.00 40.72 3.07
241 249 1.737793 CAGGGCGGACTAATTCAACAC 59.262 52.381 0.00 0.00 0.00 3.32
265 273 1.107114 TGTCGGCTTTTCTTTTGGCA 58.893 45.000 0.00 0.00 0.00 4.92
268 276 2.933260 GTCGGCTTTTCTTTTGGCAAAA 59.067 40.909 22.87 22.87 0.00 2.44
270 278 4.035091 GTCGGCTTTTCTTTTGGCAAAAAT 59.965 37.500 24.15 0.00 34.81 1.82
274 286 7.012799 TCGGCTTTTCTTTTGGCAAAAATAAAT 59.987 29.630 24.15 0.00 33.76 1.40
304 316 6.779860 ACTGTGGTACTGTATTTCATTTCCT 58.220 36.000 0.00 0.00 0.00 3.36
314 326 9.661563 ACTGTATTTCATTTCCTTAACGTGATA 57.338 29.630 0.00 0.00 0.00 2.15
316 328 9.661563 TGTATTTCATTTCCTTAACGTGATACT 57.338 29.630 0.00 0.00 0.00 2.12
321 333 9.793252 TTCATTTCCTTAACGTGATACTAGTAC 57.207 33.333 4.31 0.35 0.00 2.73
322 334 8.124823 TCATTTCCTTAACGTGATACTAGTACG 58.875 37.037 13.71 13.71 42.98 3.67
323 335 7.609760 TTTCCTTAACGTGATACTAGTACGA 57.390 36.000 20.46 1.56 40.01 3.43
325 337 7.792374 TCCTTAACGTGATACTAGTACGATT 57.208 36.000 20.46 13.58 40.01 3.34
326 338 8.213518 TCCTTAACGTGATACTAGTACGATTT 57.786 34.615 20.46 9.75 40.01 2.17
327 339 9.325198 TCCTTAACGTGATACTAGTACGATTTA 57.675 33.333 20.46 8.92 40.01 1.40
485 514 7.841729 AGAGATTCCAGTACCAAGATTAGAGAA 59.158 37.037 0.00 0.00 0.00 2.87
499 565 9.706691 CAAGATTAGAGAAAACCTACACTGTTA 57.293 33.333 0.00 0.00 0.00 2.41
500 566 9.708092 AAGATTAGAGAAAACCTACACTGTTAC 57.292 33.333 0.00 0.00 0.00 2.50
501 567 9.091220 AGATTAGAGAAAACCTACACTGTTACT 57.909 33.333 0.00 0.00 0.00 2.24
502 568 9.356433 GATTAGAGAAAACCTACACTGTTACTC 57.644 37.037 0.00 0.00 33.49 2.59
503 569 6.980416 AGAGAAAACCTACACTGTTACTCT 57.020 37.500 0.00 0.00 36.12 3.24
504 570 7.362802 AGAGAAAACCTACACTGTTACTCTT 57.637 36.000 0.00 0.00 36.82 2.85
505 571 8.474710 AGAGAAAACCTACACTGTTACTCTTA 57.525 34.615 0.00 0.00 36.82 2.10
506 572 8.358895 AGAGAAAACCTACACTGTTACTCTTAC 58.641 37.037 0.00 0.00 36.82 2.34
507 573 8.247666 AGAAAACCTACACTGTTACTCTTACT 57.752 34.615 0.00 0.00 0.00 2.24
508 574 8.142551 AGAAAACCTACACTGTTACTCTTACTG 58.857 37.037 0.00 0.00 0.00 2.74
509 575 5.388408 ACCTACACTGTTACTCTTACTGC 57.612 43.478 0.00 0.00 0.00 4.40
510 576 5.078256 ACCTACACTGTTACTCTTACTGCT 58.922 41.667 0.00 0.00 0.00 4.24
511 577 5.047943 ACCTACACTGTTACTCTTACTGCTG 60.048 44.000 0.00 0.00 0.00 4.41
512 578 5.183331 CCTACACTGTTACTCTTACTGCTGA 59.817 44.000 0.00 0.00 0.00 4.26
513 579 5.531122 ACACTGTTACTCTTACTGCTGAA 57.469 39.130 0.00 0.00 0.00 3.02
514 580 5.290386 ACACTGTTACTCTTACTGCTGAAC 58.710 41.667 0.00 0.00 0.00 3.18
515 581 4.686554 CACTGTTACTCTTACTGCTGAACC 59.313 45.833 0.00 0.00 0.00 3.62
516 582 3.909430 TGTTACTCTTACTGCTGAACCG 58.091 45.455 0.00 0.00 0.00 4.44
517 583 2.649331 TACTCTTACTGCTGAACCGC 57.351 50.000 0.00 0.00 0.00 5.68
518 584 0.388649 ACTCTTACTGCTGAACCGCG 60.389 55.000 0.00 0.00 0.00 6.46
519 585 1.078759 CTCTTACTGCTGAACCGCGG 61.079 60.000 26.86 26.86 42.00 6.46
545 611 0.250467 GTCTGCTGCAGGAGGAAACA 60.250 55.000 31.75 12.21 34.00 2.83
568 634 2.652893 GATGGCTTTGCGACGATGGC 62.653 60.000 0.00 0.00 0.00 4.40
569 635 4.179579 GGCTTTGCGACGATGGCC 62.180 66.667 0.00 0.00 0.00 5.36
570 636 4.179579 GCTTTGCGACGATGGCCC 62.180 66.667 0.00 0.00 0.00 5.80
571 637 3.508840 CTTTGCGACGATGGCCCC 61.509 66.667 0.00 0.00 0.00 5.80
589 655 2.203422 CAACCCTCCAACCGGCAA 60.203 61.111 0.00 0.00 0.00 4.52
612 678 2.833794 ACACACGCACAAGAGTATTGT 58.166 42.857 0.00 0.00 0.00 2.71
623 689 4.757149 ACAAGAGTATTGTTTGTGCTCTCC 59.243 41.667 0.00 0.00 37.62 3.71
638 704 3.391665 CTCCGCTAACTGGGCTGGG 62.392 68.421 0.00 0.00 0.00 4.45
640 706 4.101448 CGCTAACTGGGCTGGGCT 62.101 66.667 0.00 0.00 0.00 5.19
641 707 2.439156 GCTAACTGGGCTGGGCTG 60.439 66.667 0.00 0.00 0.00 4.85
642 708 2.273449 CTAACTGGGCTGGGCTGG 59.727 66.667 0.00 0.00 0.00 4.85
643 709 2.204074 TAACTGGGCTGGGCTGGA 60.204 61.111 0.00 0.00 0.00 3.86
644 710 2.262774 CTAACTGGGCTGGGCTGGAG 62.263 65.000 0.00 0.00 0.00 3.86
645 711 2.763988 TAACTGGGCTGGGCTGGAGA 62.764 60.000 0.00 0.00 0.00 3.71
646 712 3.795041 CTGGGCTGGGCTGGAGAG 61.795 72.222 0.00 0.00 0.00 3.20
647 713 4.337304 TGGGCTGGGCTGGAGAGA 62.337 66.667 0.00 0.00 0.00 3.10
648 714 3.011517 GGGCTGGGCTGGAGAGAA 61.012 66.667 0.00 0.00 0.00 2.87
649 715 2.270527 GGCTGGGCTGGAGAGAAC 59.729 66.667 0.00 0.00 0.00 3.01
650 716 2.270527 GCTGGGCTGGAGAGAACC 59.729 66.667 0.00 0.00 0.00 3.62
651 717 2.596851 GCTGGGCTGGAGAGAACCA 61.597 63.158 0.00 0.00 38.33 3.67
652 718 1.298014 CTGGGCTGGAGAGAACCAC 59.702 63.158 0.00 0.00 35.91 4.16
653 719 1.152030 TGGGCTGGAGAGAACCACT 60.152 57.895 0.00 0.00 35.91 4.00
654 720 0.116342 TGGGCTGGAGAGAACCACTA 59.884 55.000 0.00 0.00 35.91 2.74
655 721 0.537653 GGGCTGGAGAGAACCACTAC 59.462 60.000 0.00 0.00 35.91 2.73
656 722 0.173708 GGCTGGAGAGAACCACTACG 59.826 60.000 0.00 0.00 35.91 3.51
657 723 0.458716 GCTGGAGAGAACCACTACGC 60.459 60.000 0.00 0.00 35.91 4.42
658 724 0.173708 CTGGAGAGAACCACTACGCC 59.826 60.000 0.00 0.00 35.91 5.68
659 725 0.251653 TGGAGAGAACCACTACGCCT 60.252 55.000 0.00 0.00 34.77 5.52
660 726 0.896226 GGAGAGAACCACTACGCCTT 59.104 55.000 0.00 0.00 0.00 4.35
661 727 1.275573 GGAGAGAACCACTACGCCTTT 59.724 52.381 0.00 0.00 0.00 3.11
662 728 2.289506 GGAGAGAACCACTACGCCTTTT 60.290 50.000 0.00 0.00 0.00 2.27
663 729 2.994578 GAGAGAACCACTACGCCTTTTC 59.005 50.000 0.00 0.00 0.00 2.29
664 730 1.725164 GAGAACCACTACGCCTTTTCG 59.275 52.381 0.00 0.00 0.00 3.46
665 731 0.165295 GAACCACTACGCCTTTTCGC 59.835 55.000 0.00 0.00 0.00 4.70
676 742 3.365297 GCCTTTTCGCGTTTACTACTC 57.635 47.619 5.77 0.00 0.00 2.59
677 743 2.093310 GCCTTTTCGCGTTTACTACTCC 59.907 50.000 5.77 0.00 0.00 3.85
678 744 3.582780 CCTTTTCGCGTTTACTACTCCT 58.417 45.455 5.77 0.00 0.00 3.69
679 745 4.737054 CCTTTTCGCGTTTACTACTCCTA 58.263 43.478 5.77 0.00 0.00 2.94
680 746 5.346522 CCTTTTCGCGTTTACTACTCCTAT 58.653 41.667 5.77 0.00 0.00 2.57
681 747 5.458126 CCTTTTCGCGTTTACTACTCCTATC 59.542 44.000 5.77 0.00 0.00 2.08
682 748 3.867055 TCGCGTTTACTACTCCTATCG 57.133 47.619 5.77 0.00 0.00 2.92
683 749 3.457234 TCGCGTTTACTACTCCTATCGA 58.543 45.455 5.77 0.00 0.00 3.59
684 750 3.492383 TCGCGTTTACTACTCCTATCGAG 59.508 47.826 5.77 0.00 44.95 4.04
685 751 3.492383 CGCGTTTACTACTCCTATCGAGA 59.508 47.826 0.00 0.00 41.63 4.04
686 752 4.152045 CGCGTTTACTACTCCTATCGAGAT 59.848 45.833 0.00 0.00 41.63 2.75
687 753 5.620467 GCGTTTACTACTCCTATCGAGATC 58.380 45.833 0.00 0.00 41.63 2.75
688 754 5.390779 GCGTTTACTACTCCTATCGAGATCC 60.391 48.000 0.00 0.00 41.63 3.36
689 755 5.122082 CGTTTACTACTCCTATCGAGATCCC 59.878 48.000 0.00 0.00 41.63 3.85
715 781 4.067913 GACGTTAACCCGCCCCGA 62.068 66.667 0.00 0.00 0.00 5.14
747 813 0.802607 CTCCGTGTTAGCTCCGCTTC 60.803 60.000 0.00 0.00 40.44 3.86
748 814 1.215647 CCGTGTTAGCTCCGCTTCT 59.784 57.895 0.00 0.00 40.44 2.85
749 815 0.389948 CCGTGTTAGCTCCGCTTCTT 60.390 55.000 0.00 0.00 40.44 2.52
751 817 1.797025 GTGTTAGCTCCGCTTCTTGT 58.203 50.000 0.00 0.00 40.44 3.16
752 818 2.670229 CGTGTTAGCTCCGCTTCTTGTA 60.670 50.000 0.00 0.00 40.44 2.41
754 820 2.297880 TGTTAGCTCCGCTTCTTGTACA 59.702 45.455 0.00 0.00 40.44 2.90
755 821 2.649331 TAGCTCCGCTTCTTGTACAC 57.351 50.000 0.00 0.00 40.44 2.90
756 822 0.388649 AGCTCCGCTTCTTGTACACG 60.389 55.000 0.00 0.00 33.89 4.49
758 824 1.736032 GCTCCGCTTCTTGTACACGAT 60.736 52.381 2.52 0.00 0.00 3.73
864 937 2.451490 CACTGCCTCTTCACTCCTCTA 58.549 52.381 0.00 0.00 0.00 2.43
865 938 2.828520 CACTGCCTCTTCACTCCTCTAA 59.171 50.000 0.00 0.00 0.00 2.10
878 951 9.184523 CTTCACTCCTCTAATTCTCTTCTCTAA 57.815 37.037 0.00 0.00 0.00 2.10
879 952 8.746052 TCACTCCTCTAATTCTCTTCTCTAAG 57.254 38.462 0.00 0.00 0.00 2.18
880 953 7.284489 TCACTCCTCTAATTCTCTTCTCTAAGC 59.716 40.741 0.00 0.00 32.36 3.09
881 954 7.285401 CACTCCTCTAATTCTCTTCTCTAAGCT 59.715 40.741 0.00 0.00 32.36 3.74
882 955 7.285401 ACTCCTCTAATTCTCTTCTCTAAGCTG 59.715 40.741 0.00 0.00 32.36 4.24
883 956 6.040391 TCCTCTAATTCTCTTCTCTAAGCTGC 59.960 42.308 0.00 0.00 32.36 5.25
884 957 6.155475 TCTAATTCTCTTCTCTAAGCTGCC 57.845 41.667 0.00 0.00 32.36 4.85
908 985 4.370364 CTCTCCTAGCTCAGTCTTGAAC 57.630 50.000 0.00 0.00 31.69 3.18
927 1004 1.336332 ACACACTCGATCACAGCTCAC 60.336 52.381 0.00 0.00 0.00 3.51
928 1005 1.067985 CACACTCGATCACAGCTCACT 60.068 52.381 0.00 0.00 0.00 3.41
931 1008 2.094803 CACTCGATCACAGCTCACTTCT 60.095 50.000 0.00 0.00 0.00 2.85
1115 1196 4.034410 GAGGAGTATGAGAAGAACCCCTT 58.966 47.826 0.00 0.00 37.93 3.95
1124 1205 1.838073 AAGAACCCCTTCGACGCCAT 61.838 55.000 0.00 0.00 0.00 4.40
1135 1216 3.561120 GACGCCATCACCAACCCCA 62.561 63.158 0.00 0.00 0.00 4.96
1182 1263 3.066900 CCGAGAACCAGGTACATACAGAG 59.933 52.174 0.00 0.00 0.00 3.35
1186 1267 2.546899 ACCAGGTACATACAGAGGCAA 58.453 47.619 0.00 0.00 0.00 4.52
1190 1271 4.576463 CCAGGTACATACAGAGGCAAAATC 59.424 45.833 0.00 0.00 0.00 2.17
1193 1274 4.576463 GGTACATACAGAGGCAAAATCCTG 59.424 45.833 0.00 0.00 36.38 3.86
1197 1278 2.048603 AGAGGCAAAATCCTGGCGC 61.049 57.895 0.00 0.00 46.09 6.53
1198 1279 3.068729 GAGGCAAAATCCTGGCGCC 62.069 63.158 22.73 22.73 46.09 6.53
1199 1280 4.147449 GGCAAAATCCTGGCGCCC 62.147 66.667 26.77 6.44 36.73 6.13
1200 1281 3.381136 GCAAAATCCTGGCGCCCA 61.381 61.111 26.77 11.42 0.00 5.36
1203 1284 1.305213 AAAATCCTGGCGCCCATGT 60.305 52.632 26.77 5.37 30.82 3.21
1204 1285 1.322538 AAAATCCTGGCGCCCATGTC 61.323 55.000 26.77 0.00 30.82 3.06
1205 1286 2.215451 AAATCCTGGCGCCCATGTCT 62.215 55.000 26.77 0.89 30.82 3.41
1206 1287 2.898920 AATCCTGGCGCCCATGTCTG 62.899 60.000 26.77 4.21 30.82 3.51
1255 1336 2.147150 TGTCTCTGTCTGTCTCTGACG 58.853 52.381 0.00 0.00 35.55 4.35
1420 1502 4.081697 CCCGGCCTTCAAAAATGTAATTCT 60.082 41.667 0.00 0.00 33.67 2.40
1483 1565 7.028962 TGGCTAATCAAGTTTTGAATGAATCG 58.971 34.615 0.00 0.00 43.95 3.34
1509 1591 0.927537 TCAAAGACTGACGCACGTTG 59.072 50.000 0.00 0.00 0.00 4.10
1513 1595 1.083401 GACTGACGCACGTTGCTTG 60.083 57.895 0.00 0.00 42.25 4.01
1516 1598 3.947841 GACGCACGTTGCTTGGCA 61.948 61.111 0.00 0.00 42.25 4.92
1554 1636 4.227864 TCATGTCAGAGCAGAGAGACTA 57.772 45.455 0.00 0.00 32.41 2.59
1557 1639 3.756117 TGTCAGAGCAGAGAGACTACAA 58.244 45.455 0.00 0.00 32.41 2.41
1718 1804 2.066262 TCTCGACATTTTTCTCCACGC 58.934 47.619 0.00 0.00 0.00 5.34
1719 1805 1.128692 CTCGACATTTTTCTCCACGCC 59.871 52.381 0.00 0.00 0.00 5.68
1720 1806 0.871722 CGACATTTTTCTCCACGCCA 59.128 50.000 0.00 0.00 0.00 5.69
1721 1807 1.399727 CGACATTTTTCTCCACGCCAC 60.400 52.381 0.00 0.00 0.00 5.01
1722 1808 0.591170 ACATTTTTCTCCACGCCACG 59.409 50.000 0.00 0.00 0.00 4.94
1998 2090 2.204029 AACCCCTCCAACCCGCTA 60.204 61.111 0.00 0.00 0.00 4.26
2139 2231 3.827898 GTCCTCGAGGTCCTGGCG 61.828 72.222 30.17 2.90 36.34 5.69
2310 2402 3.114647 CTTCGGGCTCGTCTCCTCG 62.115 68.421 5.57 0.00 37.69 4.63
2500 2592 0.678684 CATGAGCCACCTGATGCACA 60.679 55.000 0.00 0.00 32.76 4.57
2568 2660 1.519455 CGTCGGGCTCAACATCTCC 60.519 63.158 0.00 0.00 0.00 3.71
2664 2756 2.125147 GTGGCCATGCAGCGACTA 60.125 61.111 9.72 0.00 38.33 2.59
2676 2768 1.139095 GCGACTAGGGGAGTTCGTG 59.861 63.158 0.00 0.00 39.06 4.35
2826 2918 2.491022 GGCCGAGCGGTAGACAGAT 61.491 63.158 10.94 0.00 37.65 2.90
2842 2934 2.283298 CAGATCACAACCGCATAGCTT 58.717 47.619 0.00 0.00 0.00 3.74
2843 2935 3.118775 ACAGATCACAACCGCATAGCTTA 60.119 43.478 0.00 0.00 0.00 3.09
2846 2938 2.560504 TCACAACCGCATAGCTTATGG 58.439 47.619 0.00 0.00 36.68 2.74
2963 3062 8.803397 AGTAGCCGATTAATTCCTTTAGTTTT 57.197 30.769 0.00 0.00 0.00 2.43
3010 3109 3.015516 TTTTTCCTCGGAGCACCAC 57.984 52.632 0.00 0.00 35.59 4.16
3011 3110 0.181587 TTTTTCCTCGGAGCACCACA 59.818 50.000 0.00 0.00 35.59 4.17
3012 3111 0.181587 TTTTCCTCGGAGCACCACAA 59.818 50.000 0.00 0.00 35.59 3.33
3013 3112 0.250295 TTTCCTCGGAGCACCACAAG 60.250 55.000 0.00 0.00 35.59 3.16
3111 3214 6.103997 GGATCGTGTATTTTTGACTGGAGTA 58.896 40.000 0.00 0.00 0.00 2.59
3115 3218 6.592607 TCGTGTATTTTTGACTGGAGTATTCC 59.407 38.462 0.00 0.00 44.31 3.01
3118 3221 7.824779 GTGTATTTTTGACTGGAGTATTCCTCT 59.175 37.037 5.79 0.00 44.36 3.69
3203 3309 9.228949 CTACACTACTTCTACCTTACTCTTTGA 57.771 37.037 0.00 0.00 0.00 2.69
3206 3312 7.911205 CACTACTTCTACCTTACTCTTTGATCG 59.089 40.741 0.00 0.00 0.00 3.69
3208 3314 4.288670 TCTACCTTACTCTTTGATCGCG 57.711 45.455 0.00 0.00 0.00 5.87
3209 3315 3.693085 TCTACCTTACTCTTTGATCGCGT 59.307 43.478 5.77 0.00 0.00 6.01
3211 3317 1.927174 CCTTACTCTTTGATCGCGTGG 59.073 52.381 5.77 0.00 0.00 4.94
3213 3319 2.273370 TACTCTTTGATCGCGTGGTC 57.727 50.000 5.77 1.22 0.00 4.02
3214 3320 0.732880 ACTCTTTGATCGCGTGGTCG 60.733 55.000 5.77 0.00 40.37 4.79
3224 3330 3.467226 CGTGGTCGCCCCCTGTAT 61.467 66.667 0.00 0.00 0.00 2.29
3225 3331 2.129146 CGTGGTCGCCCCCTGTATA 61.129 63.158 0.00 0.00 0.00 1.47
3226 3332 1.444672 GTGGTCGCCCCCTGTATAC 59.555 63.158 0.00 0.00 0.00 1.47
3227 3333 1.001888 TGGTCGCCCCCTGTATACA 59.998 57.895 5.25 5.25 0.00 2.29
3265 3371 1.067364 TCACGTGAAGTCAAACCGCTA 59.933 47.619 17.62 0.00 0.00 4.26
3289 3395 2.436646 CGGCGGTTCCAATGCTCT 60.437 61.111 0.00 0.00 34.01 4.09
3308 3414 4.201763 GCTCTATTGTCAGCTGCAAAGTAC 60.202 45.833 21.71 10.12 32.48 2.73
3450 3571 5.105146 TGTGACCACCTTTGCTTAAACAAAT 60.105 36.000 4.58 0.00 38.76 2.32
3464 3585 1.080569 CAAATGGAGCGTTGGTGGC 60.081 57.895 0.00 0.00 0.00 5.01
3473 3594 2.686816 CGTTGGTGGCCATTCGGAC 61.687 63.158 9.72 6.97 42.99 4.79
3509 3632 1.676006 CAGTTTGCGGTTGAAAGGTCT 59.324 47.619 0.00 0.00 0.00 3.85
3510 3633 1.676006 AGTTTGCGGTTGAAAGGTCTG 59.324 47.619 0.00 0.00 0.00 3.51
3511 3634 1.404035 GTTTGCGGTTGAAAGGTCTGT 59.596 47.619 0.00 0.00 0.00 3.41
3512 3635 1.021202 TTGCGGTTGAAAGGTCTGTG 58.979 50.000 0.00 0.00 0.00 3.66
3513 3636 0.107410 TGCGGTTGAAAGGTCTGTGT 60.107 50.000 0.00 0.00 0.00 3.72
3514 3637 0.307760 GCGGTTGAAAGGTCTGTGTG 59.692 55.000 0.00 0.00 0.00 3.82
3515 3638 0.944386 CGGTTGAAAGGTCTGTGTGG 59.056 55.000 0.00 0.00 0.00 4.17
3516 3639 1.745827 CGGTTGAAAGGTCTGTGTGGT 60.746 52.381 0.00 0.00 0.00 4.16
3517 3640 1.947456 GGTTGAAAGGTCTGTGTGGTC 59.053 52.381 0.00 0.00 0.00 4.02
3543 3678 3.181506 GCGCAACCCAAACAAAAATGAAA 60.182 39.130 0.30 0.00 0.00 2.69
3556 3691 1.526575 AATGAAACTGCTGGGCCACG 61.527 55.000 0.00 0.00 0.00 4.94
3561 3696 1.847798 AACTGCTGGGCCACGGATAA 61.848 55.000 18.04 0.00 0.00 1.75
3596 3731 1.860078 GGAGCACGTTGTTTCTCCG 59.140 57.895 0.00 0.00 36.18 4.63
3597 3732 0.599204 GGAGCACGTTGTTTCTCCGA 60.599 55.000 0.00 0.00 36.18 4.55
3598 3733 0.784778 GAGCACGTTGTTTCTCCGAG 59.215 55.000 0.00 0.00 0.00 4.63
3599 3734 0.600255 AGCACGTTGTTTCTCCGAGG 60.600 55.000 0.00 0.00 0.00 4.63
3600 3735 1.566018 GCACGTTGTTTCTCCGAGGG 61.566 60.000 0.00 0.00 0.00 4.30
3601 3736 0.249741 CACGTTGTTTCTCCGAGGGT 60.250 55.000 0.00 0.00 0.00 4.34
3602 3737 0.249741 ACGTTGTTTCTCCGAGGGTG 60.250 55.000 0.00 0.00 0.00 4.61
3603 3738 1.566018 CGTTGTTTCTCCGAGGGTGC 61.566 60.000 0.00 0.00 0.00 5.01
3604 3739 0.250338 GTTGTTTCTCCGAGGGTGCT 60.250 55.000 0.00 0.00 0.00 4.40
3605 3740 0.472471 TTGTTTCTCCGAGGGTGCTT 59.528 50.000 0.00 0.00 0.00 3.91
3606 3741 0.250295 TGTTTCTCCGAGGGTGCTTG 60.250 55.000 0.00 0.00 0.00 4.01
3607 3742 0.955919 GTTTCTCCGAGGGTGCTTGG 60.956 60.000 0.00 0.00 0.00 3.61
3608 3743 1.125093 TTTCTCCGAGGGTGCTTGGA 61.125 55.000 0.00 0.00 35.68 3.53
3609 3744 0.909610 TTCTCCGAGGGTGCTTGGAT 60.910 55.000 0.00 0.00 36.39 3.41
3610 3745 0.032515 TCTCCGAGGGTGCTTGGATA 60.033 55.000 0.00 0.00 36.39 2.59
3611 3746 1.051812 CTCCGAGGGTGCTTGGATAT 58.948 55.000 0.00 0.00 36.39 1.63
3612 3747 0.758734 TCCGAGGGTGCTTGGATATG 59.241 55.000 0.00 0.00 32.19 1.78
3613 3748 0.469917 CCGAGGGTGCTTGGATATGT 59.530 55.000 0.00 0.00 0.00 2.29
3614 3749 1.134098 CCGAGGGTGCTTGGATATGTT 60.134 52.381 0.00 0.00 0.00 2.71
3615 3750 2.643551 CGAGGGTGCTTGGATATGTTT 58.356 47.619 0.00 0.00 0.00 2.83
3616 3751 3.016736 CGAGGGTGCTTGGATATGTTTT 58.983 45.455 0.00 0.00 0.00 2.43
3617 3752 4.196193 CGAGGGTGCTTGGATATGTTTTA 58.804 43.478 0.00 0.00 0.00 1.52
3618 3753 4.273480 CGAGGGTGCTTGGATATGTTTTAG 59.727 45.833 0.00 0.00 0.00 1.85
3619 3754 5.193099 AGGGTGCTTGGATATGTTTTAGT 57.807 39.130 0.00 0.00 0.00 2.24
3620 3755 5.193679 AGGGTGCTTGGATATGTTTTAGTC 58.806 41.667 0.00 0.00 0.00 2.59
3621 3756 5.044846 AGGGTGCTTGGATATGTTTTAGTCT 60.045 40.000 0.00 0.00 0.00 3.24
3622 3757 5.297029 GGGTGCTTGGATATGTTTTAGTCTC 59.703 44.000 0.00 0.00 0.00 3.36
3623 3758 5.880332 GGTGCTTGGATATGTTTTAGTCTCA 59.120 40.000 0.00 0.00 0.00 3.27
3624 3759 6.543831 GGTGCTTGGATATGTTTTAGTCTCAT 59.456 38.462 0.00 0.00 0.00 2.90
3625 3760 7.412853 GTGCTTGGATATGTTTTAGTCTCATG 58.587 38.462 0.00 0.00 0.00 3.07
3626 3761 7.280876 GTGCTTGGATATGTTTTAGTCTCATGA 59.719 37.037 0.00 0.00 0.00 3.07
3627 3762 7.994911 TGCTTGGATATGTTTTAGTCTCATGAT 59.005 33.333 0.00 0.00 0.00 2.45
3628 3763 8.844244 GCTTGGATATGTTTTAGTCTCATGATT 58.156 33.333 0.00 0.00 0.00 2.57
3640 3775 9.667107 TTTAGTCTCATGATTAAAAGTAGTGGG 57.333 33.333 0.00 0.00 33.44 4.61
3641 3776 7.496346 AGTCTCATGATTAAAAGTAGTGGGA 57.504 36.000 0.00 0.00 0.00 4.37
3642 3777 7.331791 AGTCTCATGATTAAAAGTAGTGGGAC 58.668 38.462 0.00 0.00 36.20 4.46
3643 3778 7.181125 AGTCTCATGATTAAAAGTAGTGGGACT 59.819 37.037 0.00 0.00 40.16 3.85
3644 3779 8.475639 GTCTCATGATTAAAAGTAGTGGGACTA 58.524 37.037 0.00 0.00 33.87 2.59
3645 3780 9.042450 TCTCATGATTAAAAGTAGTGGGACTAA 57.958 33.333 0.00 0.00 31.62 2.24
3646 3781 9.667107 CTCATGATTAAAAGTAGTGGGACTAAA 57.333 33.333 0.00 0.00 31.62 1.85
3650 3785 9.856162 TGATTAAAAGTAGTGGGACTAAAACTT 57.144 29.630 0.00 0.00 31.62 2.66
3652 3787 6.387041 AAAAGTAGTGGGACTAAAACTTGC 57.613 37.500 0.00 0.00 31.62 4.01
3653 3788 4.976540 AGTAGTGGGACTAAAACTTGCT 57.023 40.909 0.00 0.00 31.62 3.91
3654 3789 6.429521 AAGTAGTGGGACTAAAACTTGCTA 57.570 37.500 0.00 0.00 31.62 3.49
3655 3790 6.038997 AGTAGTGGGACTAAAACTTGCTAG 57.961 41.667 0.00 0.00 31.62 3.42
3656 3791 4.976540 AGTGGGACTAAAACTTGCTAGT 57.023 40.909 0.00 0.00 35.68 2.57
3657 3792 4.895961 AGTGGGACTAAAACTTGCTAGTC 58.104 43.478 0.07 0.62 42.17 2.59
3658 3793 4.593634 AGTGGGACTAAAACTTGCTAGTCT 59.406 41.667 0.07 0.00 42.42 3.24
3659 3794 4.930405 GTGGGACTAAAACTTGCTAGTCTC 59.070 45.833 0.07 1.39 43.29 3.36
3660 3795 5.148651 GGGACTAAAACTTGCTAGTCTCA 57.851 43.478 0.07 0.00 42.76 3.27
3661 3796 4.930405 GGGACTAAAACTTGCTAGTCTCAC 59.070 45.833 0.07 0.00 42.76 3.51
3662 3797 4.621886 GGACTAAAACTTGCTAGTCTCACG 59.378 45.833 0.07 0.00 42.42 4.35
3663 3798 3.988517 ACTAAAACTTGCTAGTCTCACGC 59.011 43.478 0.07 0.00 31.99 5.34
3664 3799 2.526304 AAACTTGCTAGTCTCACGCA 57.474 45.000 0.07 0.00 31.99 5.24
3665 3800 2.751166 AACTTGCTAGTCTCACGCAT 57.249 45.000 0.07 0.00 31.99 4.73
3666 3801 2.001812 ACTTGCTAGTCTCACGCATG 57.998 50.000 0.00 0.00 35.64 4.06
3667 3802 0.649475 CTTGCTAGTCTCACGCATGC 59.351 55.000 7.91 7.91 33.15 4.06
3668 3803 0.247460 TTGCTAGTCTCACGCATGCT 59.753 50.000 17.13 0.00 33.15 3.79
3669 3804 0.247460 TGCTAGTCTCACGCATGCTT 59.753 50.000 17.13 2.67 0.00 3.91
3670 3805 0.649475 GCTAGTCTCACGCATGCTTG 59.351 55.000 17.59 17.59 0.00 4.01
3671 3806 1.284657 CTAGTCTCACGCATGCTTGG 58.715 55.000 22.47 13.80 0.00 3.61
3672 3807 0.894835 TAGTCTCACGCATGCTTGGA 59.105 50.000 22.47 15.68 0.00 3.53
3673 3808 0.251354 AGTCTCACGCATGCTTGGAT 59.749 50.000 22.47 5.16 0.00 3.41
3674 3809 1.482182 AGTCTCACGCATGCTTGGATA 59.518 47.619 22.47 7.07 0.00 2.59
3675 3810 1.594862 GTCTCACGCATGCTTGGATAC 59.405 52.381 22.47 14.37 0.00 2.24
3710 3845 9.817809 AATAGACTAAAATCGAGTTAATGAGCA 57.182 29.630 0.00 0.00 0.00 4.26
3711 3846 9.988815 ATAGACTAAAATCGAGTTAATGAGCAT 57.011 29.630 0.00 0.00 0.00 3.79
3712 3847 8.723942 AGACTAAAATCGAGTTAATGAGCATT 57.276 30.769 0.00 0.97 34.93 3.56
3713 3848 9.167311 AGACTAAAATCGAGTTAATGAGCATTT 57.833 29.630 0.00 0.00 32.50 2.32
3721 3856 9.950496 ATCGAGTTAATGAGCATTTATTATCCT 57.050 29.630 0.52 0.00 32.50 3.24
3722 3857 9.424319 TCGAGTTAATGAGCATTTATTATCCTC 57.576 33.333 0.52 0.00 32.50 3.71
3723 3858 8.660373 CGAGTTAATGAGCATTTATTATCCTCC 58.340 37.037 0.52 0.00 32.50 4.30
3724 3859 9.507329 GAGTTAATGAGCATTTATTATCCTCCA 57.493 33.333 0.52 0.00 32.50 3.86
3725 3860 9.866655 AGTTAATGAGCATTTATTATCCTCCAA 57.133 29.630 0.52 0.00 32.50 3.53
3728 3863 6.959639 TGAGCATTTATTATCCTCCAAACC 57.040 37.500 0.00 0.00 0.00 3.27
3729 3864 5.833131 TGAGCATTTATTATCCTCCAAACCC 59.167 40.000 0.00 0.00 0.00 4.11
3730 3865 6.030727 AGCATTTATTATCCTCCAAACCCT 57.969 37.500 0.00 0.00 0.00 4.34
3731 3866 5.835280 AGCATTTATTATCCTCCAAACCCTG 59.165 40.000 0.00 0.00 0.00 4.45
3732 3867 5.509670 GCATTTATTATCCTCCAAACCCTGC 60.510 44.000 0.00 0.00 0.00 4.85
3733 3868 4.871871 TTATTATCCTCCAAACCCTGCA 57.128 40.909 0.00 0.00 0.00 4.41
3734 3869 3.756082 ATTATCCTCCAAACCCTGCAA 57.244 42.857 0.00 0.00 0.00 4.08
3735 3870 3.756082 TTATCCTCCAAACCCTGCAAT 57.244 42.857 0.00 0.00 0.00 3.56
3736 3871 2.149973 ATCCTCCAAACCCTGCAATC 57.850 50.000 0.00 0.00 0.00 2.67
3737 3872 0.039618 TCCTCCAAACCCTGCAATCC 59.960 55.000 0.00 0.00 0.00 3.01
3738 3873 0.251742 CCTCCAAACCCTGCAATCCA 60.252 55.000 0.00 0.00 0.00 3.41
3739 3874 1.180029 CTCCAAACCCTGCAATCCAG 58.820 55.000 0.00 0.00 41.41 3.86
3740 3875 0.776810 TCCAAACCCTGCAATCCAGA 59.223 50.000 0.00 0.00 44.64 3.86
3741 3876 1.146774 TCCAAACCCTGCAATCCAGAA 59.853 47.619 0.00 0.00 44.64 3.02
3742 3877 1.273327 CCAAACCCTGCAATCCAGAAC 59.727 52.381 0.00 0.00 44.64 3.01
3743 3878 2.242043 CAAACCCTGCAATCCAGAACT 58.758 47.619 0.00 0.00 44.64 3.01
3744 3879 2.206576 AACCCTGCAATCCAGAACTC 57.793 50.000 0.00 0.00 44.64 3.01
3745 3880 0.036010 ACCCTGCAATCCAGAACTCG 60.036 55.000 0.00 0.00 44.64 4.18
3746 3881 1.372087 CCCTGCAATCCAGAACTCGC 61.372 60.000 0.00 0.00 44.64 5.03
3747 3882 0.674581 CCTGCAATCCAGAACTCGCA 60.675 55.000 0.00 0.00 44.64 5.10
3748 3883 1.376543 CTGCAATCCAGAACTCGCAT 58.623 50.000 0.00 0.00 44.64 4.73
3749 3884 1.063616 CTGCAATCCAGAACTCGCATG 59.936 52.381 0.00 0.00 44.64 4.06
3750 3885 1.089920 GCAATCCAGAACTCGCATGT 58.910 50.000 0.00 0.00 0.00 3.21
3751 3886 1.202110 GCAATCCAGAACTCGCATGTG 60.202 52.381 0.00 0.00 0.00 3.21
3752 3887 2.079158 CAATCCAGAACTCGCATGTGT 58.921 47.619 6.09 0.00 0.00 3.72
3753 3888 2.479566 ATCCAGAACTCGCATGTGTT 57.520 45.000 6.09 3.50 34.68 3.32
3754 3889 3.610040 ATCCAGAACTCGCATGTGTTA 57.390 42.857 6.09 0.00 32.29 2.41
3755 3890 3.394674 TCCAGAACTCGCATGTGTTAA 57.605 42.857 6.09 0.00 32.29 2.01
3756 3891 3.734463 TCCAGAACTCGCATGTGTTAAA 58.266 40.909 6.09 0.00 32.29 1.52
3757 3892 3.745975 TCCAGAACTCGCATGTGTTAAAG 59.254 43.478 6.09 0.00 32.29 1.85
3758 3893 3.120199 CCAGAACTCGCATGTGTTAAAGG 60.120 47.826 6.09 0.00 32.29 3.11
3759 3894 3.745975 CAGAACTCGCATGTGTTAAAGGA 59.254 43.478 6.09 0.00 32.29 3.36
3760 3895 3.997021 AGAACTCGCATGTGTTAAAGGAG 59.003 43.478 6.09 0.00 32.29 3.69
3761 3896 2.699954 ACTCGCATGTGTTAAAGGAGG 58.300 47.619 6.09 0.00 0.00 4.30
3762 3897 2.009774 CTCGCATGTGTTAAAGGAGGG 58.990 52.381 6.09 0.00 0.00 4.30
3763 3898 1.094785 CGCATGTGTTAAAGGAGGGG 58.905 55.000 0.00 0.00 0.00 4.79
3764 3899 1.339631 CGCATGTGTTAAAGGAGGGGA 60.340 52.381 0.00 0.00 0.00 4.81
3765 3900 2.369394 GCATGTGTTAAAGGAGGGGAG 58.631 52.381 0.00 0.00 0.00 4.30
3766 3901 2.290960 GCATGTGTTAAAGGAGGGGAGT 60.291 50.000 0.00 0.00 0.00 3.85
3767 3902 3.814316 GCATGTGTTAAAGGAGGGGAGTT 60.814 47.826 0.00 0.00 0.00 3.01
3768 3903 4.566907 GCATGTGTTAAAGGAGGGGAGTTA 60.567 45.833 0.00 0.00 0.00 2.24
3769 3904 5.566469 CATGTGTTAAAGGAGGGGAGTTAA 58.434 41.667 0.00 0.00 0.00 2.01
3770 3905 5.649970 TGTGTTAAAGGAGGGGAGTTAAA 57.350 39.130 0.00 0.00 0.00 1.52
3771 3906 6.208840 TGTGTTAAAGGAGGGGAGTTAAAT 57.791 37.500 0.00 0.00 0.00 1.40
3772 3907 6.007703 TGTGTTAAAGGAGGGGAGTTAAATG 58.992 40.000 0.00 0.00 0.00 2.32
3773 3908 6.183361 TGTGTTAAAGGAGGGGAGTTAAATGA 60.183 38.462 0.00 0.00 0.00 2.57
3774 3909 6.374613 GTGTTAAAGGAGGGGAGTTAAATGAG 59.625 42.308 0.00 0.00 0.00 2.90
3775 3910 4.592997 AAAGGAGGGGAGTTAAATGAGG 57.407 45.455 0.00 0.00 0.00 3.86
3776 3911 3.508952 AGGAGGGGAGTTAAATGAGGA 57.491 47.619 0.00 0.00 0.00 3.71
3777 3912 3.388913 AGGAGGGGAGTTAAATGAGGAG 58.611 50.000 0.00 0.00 0.00 3.69
3778 3913 3.014110 AGGAGGGGAGTTAAATGAGGAGA 59.986 47.826 0.00 0.00 0.00 3.71
3779 3914 3.389656 GGAGGGGAGTTAAATGAGGAGAG 59.610 52.174 0.00 0.00 0.00 3.20
3780 3915 4.290942 GAGGGGAGTTAAATGAGGAGAGA 58.709 47.826 0.00 0.00 0.00 3.10
3781 3916 4.294347 AGGGGAGTTAAATGAGGAGAGAG 58.706 47.826 0.00 0.00 0.00 3.20
3782 3917 3.389656 GGGGAGTTAAATGAGGAGAGAGG 59.610 52.174 0.00 0.00 0.00 3.69
3783 3918 4.290942 GGGAGTTAAATGAGGAGAGAGGA 58.709 47.826 0.00 0.00 0.00 3.71
3784 3919 4.343814 GGGAGTTAAATGAGGAGAGAGGAG 59.656 50.000 0.00 0.00 0.00 3.69
3785 3920 5.205056 GGAGTTAAATGAGGAGAGAGGAGA 58.795 45.833 0.00 0.00 0.00 3.71
3786 3921 5.068591 GGAGTTAAATGAGGAGAGAGGAGAC 59.931 48.000 0.00 0.00 0.00 3.36
3788 3923 6.975949 AGTTAAATGAGGAGAGAGGAGACTA 58.024 40.000 0.00 0.00 44.43 2.59
3789 3924 7.415086 AGTTAAATGAGGAGAGAGGAGACTAA 58.585 38.462 0.00 0.00 44.43 2.24
3790 3925 8.065007 AGTTAAATGAGGAGAGAGGAGACTAAT 58.935 37.037 0.00 0.00 44.43 1.73
3791 3926 6.976934 AAATGAGGAGAGAGGAGACTAATC 57.023 41.667 0.00 0.00 44.43 1.75
3792 3927 4.447138 TGAGGAGAGAGGAGACTAATCC 57.553 50.000 0.00 0.00 44.43 3.01
3793 3928 3.788708 TGAGGAGAGAGGAGACTAATCCA 59.211 47.826 0.00 0.00 44.43 3.41
3794 3929 4.418526 TGAGGAGAGAGGAGACTAATCCAT 59.581 45.833 0.00 0.00 44.43 3.41
3795 3930 5.613116 TGAGGAGAGAGGAGACTAATCCATA 59.387 44.000 0.00 0.00 44.43 2.74
3796 3931 6.276806 TGAGGAGAGAGGAGACTAATCCATAT 59.723 42.308 0.00 0.00 44.43 1.78
3797 3932 7.114849 AGGAGAGAGGAGACTAATCCATATT 57.885 40.000 0.00 0.00 44.43 1.28
3798 3933 7.543755 AGGAGAGAGGAGACTAATCCATATTT 58.456 38.462 0.00 0.00 44.43 1.40
3799 3934 8.016054 AGGAGAGAGGAGACTAATCCATATTTT 58.984 37.037 0.00 0.00 44.43 1.82
3800 3935 9.315363 GGAGAGAGGAGACTAATCCATATTTTA 57.685 37.037 0.00 0.00 44.43 1.52
3802 3937 9.890915 AGAGAGGAGACTAATCCATATTTTAGT 57.109 33.333 0.00 0.00 44.43 2.24
3806 3941 9.327731 AGGAGACTAATCCATATTTTAGTAGGG 57.672 37.037 0.00 0.00 42.26 3.53
3807 3942 9.102453 GGAGACTAATCCATATTTTAGTAGGGT 57.898 37.037 0.00 0.00 38.45 4.34
3810 3945 9.722184 GACTAATCCATATTTTAGTAGGGTTCC 57.278 37.037 0.00 0.00 38.45 3.62
3811 3946 8.666821 ACTAATCCATATTTTAGTAGGGTTCCC 58.333 37.037 0.00 0.00 36.99 3.97
3812 3947 5.917545 TCCATATTTTAGTAGGGTTCCCC 57.082 43.478 4.02 0.00 45.90 4.81
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 69 3.006110 TGCTGGATTTGGCTTTCTCAAAG 59.994 43.478 0.00 0.00 41.46 2.77
67 70 2.964464 TGCTGGATTTGGCTTTCTCAAA 59.036 40.909 0.00 0.00 38.30 2.69
68 71 2.559668 CTGCTGGATTTGGCTTTCTCAA 59.440 45.455 0.00 0.00 0.00 3.02
73 76 0.971386 CACCTGCTGGATTTGGCTTT 59.029 50.000 17.64 0.00 37.04 3.51
91 99 0.038251 CAGAGGTGTGCTCGCTTACA 60.038 55.000 0.00 0.00 0.00 2.41
95 103 4.385405 GGCAGAGGTGTGCTCGCT 62.385 66.667 0.00 0.00 43.45 4.93
102 110 1.072331 AGAAAATGACGGCAGAGGTGT 59.928 47.619 0.00 0.00 0.00 4.16
157 165 1.529438 CGAGACAGGATCGACTAGAGC 59.471 57.143 0.00 0.00 42.76 4.09
161 169 1.773054 GCGCGAGACAGGATCGACTA 61.773 60.000 12.10 0.00 42.76 2.59
165 173 3.815569 GAGGCGCGAGACAGGATCG 62.816 68.421 12.10 0.00 46.78 3.69
210 218 1.905843 CCGCCCTGGATCTCGAGAT 60.906 63.158 27.63 27.63 42.00 2.75
278 290 8.380099 AGGAAATGAAATACAGTACCACAGTAA 58.620 33.333 0.00 0.00 0.00 2.24
285 297 8.173130 CACGTTAAGGAAATGAAATACAGTACC 58.827 37.037 1.43 0.00 0.00 3.34
286 298 8.928733 TCACGTTAAGGAAATGAAATACAGTAC 58.071 33.333 1.43 0.00 0.00 2.73
288 300 7.972832 TCACGTTAAGGAAATGAAATACAGT 57.027 32.000 1.43 0.00 0.00 3.55
289 301 9.916397 GTATCACGTTAAGGAAATGAAATACAG 57.084 33.333 1.43 0.00 31.99 2.74
290 302 9.661563 AGTATCACGTTAAGGAAATGAAATACA 57.338 29.630 1.43 0.00 32.94 2.29
314 326 8.964772 ACACAAGTAAGGATAAATCGTACTAGT 58.035 33.333 0.00 0.00 31.82 2.57
316 328 8.959548 TGACACAAGTAAGGATAAATCGTACTA 58.040 33.333 5.75 0.00 31.82 1.82
318 330 7.758528 ACTGACACAAGTAAGGATAAATCGTAC 59.241 37.037 0.00 0.00 29.64 3.67
320 332 6.698380 ACTGACACAAGTAAGGATAAATCGT 58.302 36.000 0.00 0.00 29.64 3.73
321 333 8.697846 TTACTGACACAAGTAAGGATAAATCG 57.302 34.615 0.00 0.00 37.65 3.34
323 335 9.787435 TGTTTACTGACACAAGTAAGGATAAAT 57.213 29.630 0.00 0.00 42.15 1.40
325 337 8.644216 TCTGTTTACTGACACAAGTAAGGATAA 58.356 33.333 0.00 0.00 42.15 1.75
326 338 8.086522 GTCTGTTTACTGACACAAGTAAGGATA 58.913 37.037 13.07 0.00 42.15 2.59
327 339 6.929606 GTCTGTTTACTGACACAAGTAAGGAT 59.070 38.462 13.07 0.00 42.15 3.24
355 367 4.415501 CGCTTGCGACGTGTGCTC 62.416 66.667 9.60 0.48 0.00 4.26
485 514 6.041751 AGCAGTAAGAGTAACAGTGTAGGTTT 59.958 38.462 0.00 0.00 0.00 3.27
499 565 0.388649 CGCGGTTCAGCAGTAAGAGT 60.389 55.000 0.00 0.00 36.85 3.24
500 566 1.078759 CCGCGGTTCAGCAGTAAGAG 61.079 60.000 19.50 0.00 36.85 2.85
501 567 1.080093 CCGCGGTTCAGCAGTAAGA 60.080 57.895 19.50 0.00 36.85 2.10
502 568 2.740714 GCCGCGGTTCAGCAGTAAG 61.741 63.158 28.70 0.00 36.85 2.34
503 569 2.740826 GCCGCGGTTCAGCAGTAA 60.741 61.111 28.70 0.00 36.85 2.24
504 570 3.691342 AGCCGCGGTTCAGCAGTA 61.691 61.111 28.70 0.00 36.85 2.74
507 573 4.927782 AACAGCCGCGGTTCAGCA 62.928 61.111 28.70 0.00 36.85 4.41
508 574 4.389576 CAACAGCCGCGGTTCAGC 62.390 66.667 28.70 12.04 0.00 4.26
509 575 3.726517 CCAACAGCCGCGGTTCAG 61.727 66.667 28.70 12.73 0.00 3.02
510 576 4.555709 ACCAACAGCCGCGGTTCA 62.556 61.111 28.70 0.00 0.00 3.18
511 577 3.723348 GACCAACAGCCGCGGTTC 61.723 66.667 28.70 11.34 31.63 3.62
512 578 4.250305 AGACCAACAGCCGCGGTT 62.250 61.111 28.70 20.13 31.63 4.44
513 579 4.988598 CAGACCAACAGCCGCGGT 62.989 66.667 28.70 11.01 35.12 5.68
516 582 3.730761 CAGCAGACCAACAGCCGC 61.731 66.667 0.00 0.00 0.00 6.53
517 583 3.730761 GCAGCAGACCAACAGCCG 61.731 66.667 0.00 0.00 0.00 5.52
518 584 2.595463 TGCAGCAGACCAACAGCC 60.595 61.111 0.00 0.00 0.00 4.85
519 585 2.623915 CCTGCAGCAGACCAACAGC 61.624 63.158 24.90 0.00 32.44 4.40
520 586 0.954449 CTCCTGCAGCAGACCAACAG 60.954 60.000 24.90 5.08 32.44 3.16
521 587 1.071987 CTCCTGCAGCAGACCAACA 59.928 57.895 24.90 0.00 32.44 3.33
522 588 1.673665 CCTCCTGCAGCAGACCAAC 60.674 63.158 24.90 0.00 32.44 3.77
523 589 1.418097 TTCCTCCTGCAGCAGACCAA 61.418 55.000 24.90 7.86 32.44 3.67
524 590 1.418097 TTTCCTCCTGCAGCAGACCA 61.418 55.000 24.90 6.25 32.44 4.02
532 598 1.841302 ATCCGCTGTTTCCTCCTGCA 61.841 55.000 0.00 0.00 0.00 4.41
568 634 4.360405 CGGTTGGAGGGTTGGGGG 62.360 72.222 0.00 0.00 0.00 5.40
569 635 4.360405 CCGGTTGGAGGGTTGGGG 62.360 72.222 0.00 0.00 37.49 4.96
571 637 3.801068 TTGCCGGTTGGAGGGTTGG 62.801 63.158 1.90 0.00 37.49 3.77
572 638 2.203422 TTGCCGGTTGGAGGGTTG 60.203 61.111 1.90 0.00 37.49 3.77
573 639 2.203437 GTTGCCGGTTGGAGGGTT 60.203 61.111 1.90 0.00 37.49 4.11
574 640 3.063197 TTGTTGCCGGTTGGAGGGT 62.063 57.895 1.90 0.00 37.49 4.34
575 641 2.203422 TTGTTGCCGGTTGGAGGG 60.203 61.111 1.90 0.00 37.49 4.30
589 655 2.303163 TACTCTTGTGCGTGTGTTGT 57.697 45.000 0.00 0.00 0.00 3.32
618 684 1.142748 CAGCCCAGTTAGCGGAGAG 59.857 63.158 0.00 0.00 34.64 3.20
619 685 2.359169 CCAGCCCAGTTAGCGGAGA 61.359 63.158 0.00 0.00 34.64 3.71
623 689 4.101448 AGCCCAGCCCAGTTAGCG 62.101 66.667 0.00 0.00 34.64 4.26
638 704 0.458716 GCGTAGTGGTTCTCTCCAGC 60.459 60.000 0.00 0.00 38.23 4.85
639 705 0.173708 GGCGTAGTGGTTCTCTCCAG 59.826 60.000 0.00 0.00 38.23 3.86
640 706 0.251653 AGGCGTAGTGGTTCTCTCCA 60.252 55.000 0.00 0.00 34.85 3.86
641 707 0.896226 AAGGCGTAGTGGTTCTCTCC 59.104 55.000 0.00 0.00 0.00 3.71
642 708 2.745515 AAAGGCGTAGTGGTTCTCTC 57.254 50.000 0.00 0.00 0.00 3.20
643 709 2.609737 CGAAAAGGCGTAGTGGTTCTCT 60.610 50.000 0.00 0.00 0.00 3.10
644 710 1.725164 CGAAAAGGCGTAGTGGTTCTC 59.275 52.381 0.00 0.00 0.00 2.87
645 711 1.792006 CGAAAAGGCGTAGTGGTTCT 58.208 50.000 0.00 0.00 0.00 3.01
646 712 0.165295 GCGAAAAGGCGTAGTGGTTC 59.835 55.000 0.00 0.00 0.00 3.62
647 713 2.241171 GCGAAAAGGCGTAGTGGTT 58.759 52.632 0.00 0.00 0.00 3.67
648 714 3.961729 GCGAAAAGGCGTAGTGGT 58.038 55.556 0.00 0.00 0.00 4.16
656 722 2.093310 GGAGTAGTAAACGCGAAAAGGC 59.907 50.000 15.93 0.00 0.00 4.35
657 723 3.582780 AGGAGTAGTAAACGCGAAAAGG 58.417 45.455 15.93 0.00 0.00 3.11
658 724 5.170981 CGATAGGAGTAGTAAACGCGAAAAG 59.829 44.000 15.93 0.00 0.00 2.27
659 725 5.030295 CGATAGGAGTAGTAAACGCGAAAA 58.970 41.667 15.93 0.00 0.00 2.29
660 726 4.332543 TCGATAGGAGTAGTAAACGCGAAA 59.667 41.667 15.93 0.00 0.00 3.46
661 727 3.871006 TCGATAGGAGTAGTAAACGCGAA 59.129 43.478 15.93 0.00 0.00 4.70
662 728 3.457234 TCGATAGGAGTAGTAAACGCGA 58.543 45.455 15.93 0.00 0.00 5.87
663 729 3.492383 TCTCGATAGGAGTAGTAAACGCG 59.508 47.826 3.53 3.53 43.60 6.01
664 730 5.390779 GGATCTCGATAGGAGTAGTAAACGC 60.391 48.000 0.00 0.00 43.60 4.84
665 731 5.122082 GGGATCTCGATAGGAGTAGTAAACG 59.878 48.000 0.00 0.00 43.60 3.60
666 732 5.122082 CGGGATCTCGATAGGAGTAGTAAAC 59.878 48.000 10.16 0.00 43.60 2.01
667 733 5.243981 CGGGATCTCGATAGGAGTAGTAAA 58.756 45.833 10.16 0.00 43.60 2.01
668 734 4.829968 CGGGATCTCGATAGGAGTAGTAA 58.170 47.826 10.16 0.00 43.60 2.24
669 735 3.369261 GCGGGATCTCGATAGGAGTAGTA 60.369 52.174 21.68 0.00 43.60 1.82
670 736 2.616001 GCGGGATCTCGATAGGAGTAGT 60.616 54.545 21.68 0.00 43.60 2.73
671 737 2.011222 GCGGGATCTCGATAGGAGTAG 58.989 57.143 21.68 0.00 43.60 2.57
672 738 1.629353 AGCGGGATCTCGATAGGAGTA 59.371 52.381 21.68 0.00 43.60 2.59
673 739 0.402504 AGCGGGATCTCGATAGGAGT 59.597 55.000 21.68 0.00 43.60 3.85
674 740 0.808125 CAGCGGGATCTCGATAGGAG 59.192 60.000 21.68 0.00 44.58 3.69
675 741 0.110678 ACAGCGGGATCTCGATAGGA 59.889 55.000 21.68 0.00 0.00 2.94
676 742 0.962489 AACAGCGGGATCTCGATAGG 59.038 55.000 21.68 3.69 0.00 2.57
677 743 1.883275 AGAACAGCGGGATCTCGATAG 59.117 52.381 21.68 10.15 0.00 2.08
678 744 1.609072 CAGAACAGCGGGATCTCGATA 59.391 52.381 21.68 0.00 0.00 2.92
679 745 0.387202 CAGAACAGCGGGATCTCGAT 59.613 55.000 21.68 10.55 0.00 3.59
680 746 0.679960 TCAGAACAGCGGGATCTCGA 60.680 55.000 21.68 0.00 0.00 4.04
681 747 0.526524 GTCAGAACAGCGGGATCTCG 60.527 60.000 11.62 11.62 0.00 4.04
682 748 0.526524 CGTCAGAACAGCGGGATCTC 60.527 60.000 0.00 0.00 0.00 2.75
683 749 1.251527 ACGTCAGAACAGCGGGATCT 61.252 55.000 0.00 0.00 0.00 2.75
684 750 0.389948 AACGTCAGAACAGCGGGATC 60.390 55.000 0.00 0.00 0.00 3.36
685 751 0.892755 TAACGTCAGAACAGCGGGAT 59.107 50.000 0.00 0.00 0.00 3.85
686 752 0.675083 TTAACGTCAGAACAGCGGGA 59.325 50.000 0.00 0.00 0.00 5.14
687 753 0.788391 GTTAACGTCAGAACAGCGGG 59.212 55.000 0.00 0.00 0.00 6.13
688 754 0.788391 GGTTAACGTCAGAACAGCGG 59.212 55.000 0.00 0.00 0.00 5.52
689 755 0.788391 GGGTTAACGTCAGAACAGCG 59.212 55.000 0.00 0.00 0.00 5.18
715 781 1.491754 ACACGGAGTTTTTAGTGGGGT 59.508 47.619 0.00 0.00 41.61 4.95
747 813 9.186323 CATTCTCCTCTTATTATCGTGTACAAG 57.814 37.037 0.00 0.00 0.00 3.16
748 814 8.141909 CCATTCTCCTCTTATTATCGTGTACAA 58.858 37.037 0.00 0.00 0.00 2.41
749 815 7.287005 ACCATTCTCCTCTTATTATCGTGTACA 59.713 37.037 0.00 0.00 0.00 2.90
751 817 7.504574 TCACCATTCTCCTCTTATTATCGTGTA 59.495 37.037 0.00 0.00 0.00 2.90
752 818 6.323996 TCACCATTCTCCTCTTATTATCGTGT 59.676 38.462 0.00 0.00 0.00 4.49
754 820 6.515200 CGTCACCATTCTCCTCTTATTATCGT 60.515 42.308 0.00 0.00 0.00 3.73
755 821 5.859114 CGTCACCATTCTCCTCTTATTATCG 59.141 44.000 0.00 0.00 0.00 2.92
756 822 5.635700 GCGTCACCATTCTCCTCTTATTATC 59.364 44.000 0.00 0.00 0.00 1.75
758 824 4.202223 GGCGTCACCATTCTCCTCTTATTA 60.202 45.833 0.00 0.00 38.86 0.98
807 880 9.667607 AACTTGGGAGCTGAGCTATATATATAT 57.332 33.333 7.08 10.10 39.88 0.86
864 937 4.768583 CAGGCAGCTTAGAGAAGAGAATT 58.231 43.478 0.00 0.00 34.25 2.17
865 938 3.432046 GCAGGCAGCTTAGAGAAGAGAAT 60.432 47.826 0.00 0.00 41.15 2.40
893 966 3.304726 CGAGTGTGTTCAAGACTGAGCTA 60.305 47.826 0.00 0.00 31.16 3.32
908 985 1.067985 AGTGAGCTGTGATCGAGTGTG 60.068 52.381 0.00 0.00 0.00 3.82
1115 1196 2.047655 GGTTGGTGATGGCGTCGA 60.048 61.111 0.00 0.00 0.00 4.20
1117 1198 2.750237 GGGGTTGGTGATGGCGTC 60.750 66.667 0.00 0.00 0.00 5.19
1120 1201 3.070576 GCTGGGGTTGGTGATGGC 61.071 66.667 0.00 0.00 0.00 4.40
1135 1216 4.794199 CATCTGGATGATGCCGCT 57.206 55.556 4.72 0.00 44.96 5.52
1182 1263 4.147449 GGGCGCCAGGATTTTGCC 62.147 66.667 30.85 1.84 44.98 4.52
1186 1267 1.754234 GACATGGGCGCCAGGATTT 60.754 57.895 30.85 9.81 37.52 2.17
1197 1278 3.900855 GCAGACTGCAGACATGGG 58.099 61.111 23.35 6.75 44.26 4.00
1255 1336 2.020559 CGCGCACGAGCTGAATTC 59.979 61.111 8.75 0.00 43.93 2.17
1470 1552 3.438434 TGACCGCATCGATTCATTCAAAA 59.562 39.130 0.00 0.00 0.00 2.44
1509 1591 2.263540 CCAATGCCTGTGCCAAGC 59.736 61.111 0.00 0.00 36.33 4.01
1513 1595 3.818787 CTCGCCAATGCCTGTGCC 61.819 66.667 0.00 0.00 36.33 5.01
1516 1598 1.675641 GAACCTCGCCAATGCCTGT 60.676 57.895 0.00 0.00 0.00 4.00
1554 1636 2.280592 GGTCGAACGCCACCTTGT 60.281 61.111 0.00 0.00 0.00 3.16
1822 1914 3.103911 GTCACGGTCGAACCTGCG 61.104 66.667 0.00 0.00 35.66 5.18
2158 2250 4.719369 GTCCAGCGCGAACTCGGT 62.719 66.667 12.10 0.00 41.17 4.69
2193 2285 2.167487 GAGGTCTTTGGAGAGGCTGTAG 59.833 54.545 0.00 0.00 31.07 2.74
2412 2504 3.649277 CTCCTTGAGGCCGTCCACG 62.649 68.421 0.00 0.00 39.44 4.94
2649 2741 2.590007 CCTAGTCGCTGCATGGCC 60.590 66.667 0.00 0.00 0.00 5.36
2661 2753 0.251653 TCTGCACGAACTCCCCTAGT 60.252 55.000 0.00 0.00 41.49 2.57
2664 2756 2.584391 GGTCTGCACGAACTCCCCT 61.584 63.158 0.00 0.00 0.00 4.79
2826 2918 2.560504 CCATAAGCTATGCGGTTGTGA 58.439 47.619 0.00 0.00 42.58 3.58
2846 2938 0.666374 GGTAATGTGGCGGTAATGGC 59.334 55.000 0.00 0.00 0.00 4.40
2963 3062 5.503002 GGTATACAGCAAAAGTAGGGGAAA 58.497 41.667 5.01 0.00 0.00 3.13
3111 3214 2.840651 CAACTGGGGTACTCAGAGGAAT 59.159 50.000 18.70 0.00 36.22 3.01
3115 3218 2.352814 CGAACAACTGGGGTACTCAGAG 60.353 54.545 18.70 13.82 36.22 3.35
3118 3221 0.034337 GCGAACAACTGGGGTACTCA 59.966 55.000 0.00 0.00 0.00 3.41
3192 3298 2.599082 GACCACGCGATCAAAGAGTAAG 59.401 50.000 15.93 0.00 0.00 2.34
3197 3303 4.162640 CGACCACGCGATCAAAGA 57.837 55.556 15.93 0.00 0.00 2.52
3209 3315 3.345582 GTATGTATACAGGGGGCGACCA 61.346 54.545 11.00 0.00 42.02 4.02
3211 3317 1.274447 GGTATGTATACAGGGGGCGAC 59.726 57.143 11.91 0.00 34.98 5.19
3213 3319 1.001633 GTGGTATGTATACAGGGGGCG 59.998 57.143 11.91 0.00 34.98 6.13
3214 3320 2.051692 TGTGGTATGTATACAGGGGGC 58.948 52.381 11.91 2.64 34.98 5.80
3215 3321 3.056107 CGATGTGGTATGTATACAGGGGG 60.056 52.174 11.91 0.00 34.98 5.40
3216 3322 3.056107 CCGATGTGGTATGTATACAGGGG 60.056 52.174 11.91 0.00 34.98 4.79
3217 3323 4.188247 CCGATGTGGTATGTATACAGGG 57.812 50.000 11.91 0.00 34.98 4.45
3289 3395 3.343617 GGGTACTTTGCAGCTGACAATA 58.656 45.455 20.43 8.70 0.00 1.90
3308 3414 1.474330 GGTTTAGCAACATGGAGGGG 58.526 55.000 0.00 0.00 34.15 4.79
3346 3452 8.701908 AAGACAACATATCATCATTATTGGCT 57.298 30.769 0.00 0.00 35.46 4.75
3450 3571 3.505790 AATGGCCACCAACGCTCCA 62.506 57.895 8.16 0.00 36.95 3.86
3527 3662 4.035441 CCAGCAGTTTCATTTTTGTTTGGG 59.965 41.667 0.00 0.00 0.00 4.12
3530 3665 3.627123 GCCCAGCAGTTTCATTTTTGTTT 59.373 39.130 0.00 0.00 0.00 2.83
3543 3678 2.297895 TTATCCGTGGCCCAGCAGT 61.298 57.895 0.00 0.00 0.00 4.40
3556 3691 3.703286 GGCAAAACCCATACGTTATCC 57.297 47.619 0.00 0.00 0.00 2.59
3596 3731 5.193679 ACTAAAACATATCCAAGCACCCTC 58.806 41.667 0.00 0.00 0.00 4.30
3597 3732 5.044846 AGACTAAAACATATCCAAGCACCCT 60.045 40.000 0.00 0.00 0.00 4.34
3598 3733 5.193679 AGACTAAAACATATCCAAGCACCC 58.806 41.667 0.00 0.00 0.00 4.61
3599 3734 5.880332 TGAGACTAAAACATATCCAAGCACC 59.120 40.000 0.00 0.00 0.00 5.01
3600 3735 6.985188 TGAGACTAAAACATATCCAAGCAC 57.015 37.500 0.00 0.00 0.00 4.40
3601 3736 7.337938 TCATGAGACTAAAACATATCCAAGCA 58.662 34.615 0.00 0.00 0.00 3.91
3602 3737 7.792374 TCATGAGACTAAAACATATCCAAGC 57.208 36.000 0.00 0.00 0.00 4.01
3614 3749 9.667107 CCCACTACTTTTAATCATGAGACTAAA 57.333 33.333 0.09 2.74 0.00 1.85
3615 3750 9.042450 TCCCACTACTTTTAATCATGAGACTAA 57.958 33.333 0.09 0.00 0.00 2.24
3616 3751 8.475639 GTCCCACTACTTTTAATCATGAGACTA 58.524 37.037 0.09 0.00 0.00 2.59
3617 3752 7.181125 AGTCCCACTACTTTTAATCATGAGACT 59.819 37.037 0.09 0.18 0.00 3.24
3618 3753 7.331791 AGTCCCACTACTTTTAATCATGAGAC 58.668 38.462 0.09 0.00 0.00 3.36
3619 3754 7.496346 AGTCCCACTACTTTTAATCATGAGA 57.504 36.000 0.09 0.00 0.00 3.27
3620 3755 9.667107 TTTAGTCCCACTACTTTTAATCATGAG 57.333 33.333 0.09 0.00 28.93 2.90
3624 3759 9.856162 AAGTTTTAGTCCCACTACTTTTAATCA 57.144 29.630 0.00 0.00 28.93 2.57
3626 3761 8.573885 GCAAGTTTTAGTCCCACTACTTTTAAT 58.426 33.333 0.00 0.00 28.93 1.40
3627 3762 7.776500 AGCAAGTTTTAGTCCCACTACTTTTAA 59.224 33.333 0.00 0.00 28.93 1.52
3628 3763 7.284820 AGCAAGTTTTAGTCCCACTACTTTTA 58.715 34.615 0.00 0.00 28.93 1.52
3629 3764 6.127101 AGCAAGTTTTAGTCCCACTACTTTT 58.873 36.000 0.00 0.00 28.93 2.27
3630 3765 5.691896 AGCAAGTTTTAGTCCCACTACTTT 58.308 37.500 0.00 0.00 28.93 2.66
3631 3766 5.306114 AGCAAGTTTTAGTCCCACTACTT 57.694 39.130 0.00 0.00 28.93 2.24
3632 3767 4.976540 AGCAAGTTTTAGTCCCACTACT 57.023 40.909 0.00 0.00 28.93 2.57
3633 3768 5.791666 ACTAGCAAGTTTTAGTCCCACTAC 58.208 41.667 0.00 0.00 27.15 2.73
3634 3769 5.778750 AGACTAGCAAGTTTTAGTCCCACTA 59.221 40.000 15.72 0.00 44.32 2.74
3635 3770 4.593634 AGACTAGCAAGTTTTAGTCCCACT 59.406 41.667 15.72 1.62 44.32 4.00
3636 3771 4.895961 AGACTAGCAAGTTTTAGTCCCAC 58.104 43.478 15.72 0.00 44.32 4.61
3637 3772 4.591498 TGAGACTAGCAAGTTTTAGTCCCA 59.409 41.667 15.72 10.61 44.32 4.37
3638 3773 4.930405 GTGAGACTAGCAAGTTTTAGTCCC 59.070 45.833 15.72 8.76 44.32 4.46
3639 3774 4.621886 CGTGAGACTAGCAAGTTTTAGTCC 59.378 45.833 15.72 10.59 44.32 3.85
3640 3775 4.090210 GCGTGAGACTAGCAAGTTTTAGTC 59.910 45.833 13.08 13.08 43.83 2.59
3641 3776 3.988517 GCGTGAGACTAGCAAGTTTTAGT 59.011 43.478 0.00 0.00 35.56 2.24
3642 3777 3.987868 TGCGTGAGACTAGCAAGTTTTAG 59.012 43.478 0.00 0.00 38.01 1.85
3643 3778 3.985008 TGCGTGAGACTAGCAAGTTTTA 58.015 40.909 0.00 0.00 38.01 1.52
3644 3779 2.833794 TGCGTGAGACTAGCAAGTTTT 58.166 42.857 0.00 0.00 38.01 2.43
3645 3780 2.526304 TGCGTGAGACTAGCAAGTTT 57.474 45.000 0.00 0.00 38.01 2.66
3646 3781 2.341257 CATGCGTGAGACTAGCAAGTT 58.659 47.619 0.00 0.00 44.51 2.66
3647 3782 2.001812 CATGCGTGAGACTAGCAAGT 57.998 50.000 0.00 0.00 44.51 3.16
3648 3783 0.649475 GCATGCGTGAGACTAGCAAG 59.351 55.000 10.93 1.94 44.51 4.01
3649 3784 0.247460 AGCATGCGTGAGACTAGCAA 59.753 50.000 13.01 0.00 44.51 3.91
3650 3785 0.247460 AAGCATGCGTGAGACTAGCA 59.753 50.000 13.01 2.79 45.46 3.49
3651 3786 0.649475 CAAGCATGCGTGAGACTAGC 59.351 55.000 26.87 0.00 0.00 3.42
3652 3787 1.134995 TCCAAGCATGCGTGAGACTAG 60.135 52.381 31.43 15.49 0.00 2.57
3653 3788 0.894835 TCCAAGCATGCGTGAGACTA 59.105 50.000 31.43 10.91 0.00 2.59
3654 3789 0.251354 ATCCAAGCATGCGTGAGACT 59.749 50.000 31.43 12.13 0.00 3.24
3655 3790 1.594862 GTATCCAAGCATGCGTGAGAC 59.405 52.381 31.43 21.51 0.00 3.36
3656 3791 1.206849 TGTATCCAAGCATGCGTGAGA 59.793 47.619 31.43 25.21 0.00 3.27
3657 3792 1.655484 TGTATCCAAGCATGCGTGAG 58.345 50.000 31.43 21.47 0.00 3.51
3658 3793 2.106477 TTGTATCCAAGCATGCGTGA 57.894 45.000 31.43 19.92 0.00 4.35
3659 3794 2.917701 TTTGTATCCAAGCATGCGTG 57.082 45.000 24.52 24.52 0.00 5.34
3660 3795 5.772825 AATATTTGTATCCAAGCATGCGT 57.227 34.783 13.01 6.07 0.00 5.24
3661 3796 8.746922 ATTTAATATTTGTATCCAAGCATGCG 57.253 30.769 13.01 0.00 0.00 4.73
3684 3819 9.817809 TGCTCATTAACTCGATTTTAGTCTATT 57.182 29.630 0.00 0.00 0.00 1.73
3685 3820 9.988815 ATGCTCATTAACTCGATTTTAGTCTAT 57.011 29.630 0.00 0.00 0.00 1.98
3686 3821 9.817809 AATGCTCATTAACTCGATTTTAGTCTA 57.182 29.630 0.00 0.00 0.00 2.59
3687 3822 8.723942 AATGCTCATTAACTCGATTTTAGTCT 57.276 30.769 0.00 0.00 0.00 3.24
3695 3830 9.950496 AGGATAATAAATGCTCATTAACTCGAT 57.050 29.630 0.00 0.00 0.00 3.59
3696 3831 9.424319 GAGGATAATAAATGCTCATTAACTCGA 57.576 33.333 2.11 0.00 36.64 4.04
3697 3832 8.660373 GGAGGATAATAAATGCTCATTAACTCG 58.340 37.037 8.48 0.00 38.10 4.18
3698 3833 9.507329 TGGAGGATAATAAATGCTCATTAACTC 57.493 33.333 8.48 0.00 38.10 3.01
3699 3834 9.866655 TTGGAGGATAATAAATGCTCATTAACT 57.133 29.630 8.48 0.00 38.10 2.24
3702 3837 9.077885 GGTTTGGAGGATAATAAATGCTCATTA 57.922 33.333 8.48 0.00 38.10 1.90
3703 3838 7.015584 GGGTTTGGAGGATAATAAATGCTCATT 59.984 37.037 8.48 0.00 38.10 2.57
3704 3839 6.494835 GGGTTTGGAGGATAATAAATGCTCAT 59.505 38.462 8.48 0.00 38.10 2.90
3705 3840 5.833131 GGGTTTGGAGGATAATAAATGCTCA 59.167 40.000 8.48 0.00 38.10 4.26
3706 3841 6.015940 CAGGGTTTGGAGGATAATAAATGCTC 60.016 42.308 0.00 0.00 36.02 4.26
3707 3842 5.835280 CAGGGTTTGGAGGATAATAAATGCT 59.165 40.000 0.00 0.00 0.00 3.79
3708 3843 5.509670 GCAGGGTTTGGAGGATAATAAATGC 60.510 44.000 0.00 0.00 0.00 3.56
3709 3844 5.598005 TGCAGGGTTTGGAGGATAATAAATG 59.402 40.000 0.00 0.00 0.00 2.32
3710 3845 5.776358 TGCAGGGTTTGGAGGATAATAAAT 58.224 37.500 0.00 0.00 0.00 1.40
3711 3846 5.199982 TGCAGGGTTTGGAGGATAATAAA 57.800 39.130 0.00 0.00 0.00 1.40
3712 3847 4.871871 TGCAGGGTTTGGAGGATAATAA 57.128 40.909 0.00 0.00 0.00 1.40
3713 3848 4.871871 TTGCAGGGTTTGGAGGATAATA 57.128 40.909 0.00 0.00 0.00 0.98
3714 3849 3.756082 TTGCAGGGTTTGGAGGATAAT 57.244 42.857 0.00 0.00 0.00 1.28
3715 3850 3.627237 GGATTGCAGGGTTTGGAGGATAA 60.627 47.826 0.00 0.00 0.00 1.75
3716 3851 2.091885 GGATTGCAGGGTTTGGAGGATA 60.092 50.000 0.00 0.00 0.00 2.59
3717 3852 1.342374 GGATTGCAGGGTTTGGAGGAT 60.342 52.381 0.00 0.00 0.00 3.24
3718 3853 0.039618 GGATTGCAGGGTTTGGAGGA 59.960 55.000 0.00 0.00 0.00 3.71
3719 3854 0.251742 TGGATTGCAGGGTTTGGAGG 60.252 55.000 0.00 0.00 0.00 4.30
3720 3855 1.180029 CTGGATTGCAGGGTTTGGAG 58.820 55.000 0.00 0.00 0.00 3.86
3721 3856 0.776810 TCTGGATTGCAGGGTTTGGA 59.223 50.000 5.27 0.00 0.00 3.53
3722 3857 1.273327 GTTCTGGATTGCAGGGTTTGG 59.727 52.381 5.27 0.00 0.00 3.28
3723 3858 2.229784 GAGTTCTGGATTGCAGGGTTTG 59.770 50.000 5.27 0.00 0.00 2.93
3724 3859 2.519013 GAGTTCTGGATTGCAGGGTTT 58.481 47.619 5.27 0.00 0.00 3.27
3725 3860 1.611673 CGAGTTCTGGATTGCAGGGTT 60.612 52.381 5.27 0.00 0.00 4.11
3726 3861 0.036010 CGAGTTCTGGATTGCAGGGT 60.036 55.000 5.27 0.00 0.00 4.34
3727 3862 1.372087 GCGAGTTCTGGATTGCAGGG 61.372 60.000 5.27 0.00 0.00 4.45
3728 3863 0.674581 TGCGAGTTCTGGATTGCAGG 60.675 55.000 5.27 0.00 32.10 4.85
3729 3864 1.063616 CATGCGAGTTCTGGATTGCAG 59.936 52.381 0.00 0.00 39.14 4.41
3730 3865 1.089112 CATGCGAGTTCTGGATTGCA 58.911 50.000 0.00 0.00 40.04 4.08
3731 3866 1.089920 ACATGCGAGTTCTGGATTGC 58.910 50.000 0.00 0.00 0.00 3.56
3732 3867 2.079158 ACACATGCGAGTTCTGGATTG 58.921 47.619 0.00 0.00 0.00 2.67
3733 3868 2.479566 ACACATGCGAGTTCTGGATT 57.520 45.000 0.00 0.00 0.00 3.01
3734 3869 2.479566 AACACATGCGAGTTCTGGAT 57.520 45.000 0.00 0.00 0.00 3.41
3735 3870 3.394674 TTAACACATGCGAGTTCTGGA 57.605 42.857 0.00 0.00 0.00 3.86
3736 3871 3.120199 CCTTTAACACATGCGAGTTCTGG 60.120 47.826 0.00 0.00 0.00 3.86
3737 3872 3.745975 TCCTTTAACACATGCGAGTTCTG 59.254 43.478 0.00 0.00 0.00 3.02
3738 3873 3.997021 CTCCTTTAACACATGCGAGTTCT 59.003 43.478 0.00 0.00 0.00 3.01
3739 3874 3.125316 CCTCCTTTAACACATGCGAGTTC 59.875 47.826 0.00 0.00 0.00 3.01
3740 3875 3.074412 CCTCCTTTAACACATGCGAGTT 58.926 45.455 0.00 0.00 0.00 3.01
3741 3876 2.615493 CCCTCCTTTAACACATGCGAGT 60.615 50.000 0.00 0.00 0.00 4.18
3742 3877 2.009774 CCCTCCTTTAACACATGCGAG 58.990 52.381 0.00 0.00 0.00 5.03
3743 3878 1.339631 CCCCTCCTTTAACACATGCGA 60.340 52.381 0.00 0.00 0.00 5.10
3744 3879 1.094785 CCCCTCCTTTAACACATGCG 58.905 55.000 0.00 0.00 0.00 4.73
3745 3880 2.290960 ACTCCCCTCCTTTAACACATGC 60.291 50.000 0.00 0.00 0.00 4.06
3746 3881 3.721087 ACTCCCCTCCTTTAACACATG 57.279 47.619 0.00 0.00 0.00 3.21
3747 3882 5.853572 TTAACTCCCCTCCTTTAACACAT 57.146 39.130 0.00 0.00 0.00 3.21
3748 3883 5.649970 TTTAACTCCCCTCCTTTAACACA 57.350 39.130 0.00 0.00 0.00 3.72
3749 3884 6.243148 TCATTTAACTCCCCTCCTTTAACAC 58.757 40.000 0.00 0.00 0.00 3.32
3750 3885 6.457159 TCATTTAACTCCCCTCCTTTAACA 57.543 37.500 0.00 0.00 0.00 2.41
3751 3886 5.886474 CCTCATTTAACTCCCCTCCTTTAAC 59.114 44.000 0.00 0.00 0.00 2.01
3752 3887 5.793763 TCCTCATTTAACTCCCCTCCTTTAA 59.206 40.000 0.00 0.00 0.00 1.52
3753 3888 5.355711 TCCTCATTTAACTCCCCTCCTTTA 58.644 41.667 0.00 0.00 0.00 1.85
3754 3889 4.183916 TCCTCATTTAACTCCCCTCCTTT 58.816 43.478 0.00 0.00 0.00 3.11
3755 3890 3.783082 CTCCTCATTTAACTCCCCTCCTT 59.217 47.826 0.00 0.00 0.00 3.36
3756 3891 3.014110 TCTCCTCATTTAACTCCCCTCCT 59.986 47.826 0.00 0.00 0.00 3.69
3757 3892 3.385115 TCTCCTCATTTAACTCCCCTCC 58.615 50.000 0.00 0.00 0.00 4.30
3758 3893 4.290942 TCTCTCCTCATTTAACTCCCCTC 58.709 47.826 0.00 0.00 0.00 4.30
3759 3894 4.294347 CTCTCTCCTCATTTAACTCCCCT 58.706 47.826 0.00 0.00 0.00 4.79
3760 3895 3.389656 CCTCTCTCCTCATTTAACTCCCC 59.610 52.174 0.00 0.00 0.00 4.81
3761 3896 4.290942 TCCTCTCTCCTCATTTAACTCCC 58.709 47.826 0.00 0.00 0.00 4.30
3762 3897 5.068591 GTCTCCTCTCTCCTCATTTAACTCC 59.931 48.000 0.00 0.00 0.00 3.85
3763 3898 5.891551 AGTCTCCTCTCTCCTCATTTAACTC 59.108 44.000 0.00 0.00 0.00 3.01
3764 3899 5.837829 AGTCTCCTCTCTCCTCATTTAACT 58.162 41.667 0.00 0.00 0.00 2.24
3765 3900 7.648039 TTAGTCTCCTCTCTCCTCATTTAAC 57.352 40.000 0.00 0.00 0.00 2.01
3766 3901 7.507616 GGATTAGTCTCCTCTCTCCTCATTTAA 59.492 40.741 0.00 0.00 32.18 1.52
3767 3902 7.007723 GGATTAGTCTCCTCTCTCCTCATTTA 58.992 42.308 0.00 0.00 32.18 1.40
3768 3903 5.838521 GGATTAGTCTCCTCTCTCCTCATTT 59.161 44.000 0.00 0.00 32.18 2.32
3769 3904 5.103301 TGGATTAGTCTCCTCTCTCCTCATT 60.103 44.000 0.00 0.00 36.20 2.57
3770 3905 4.418526 TGGATTAGTCTCCTCTCTCCTCAT 59.581 45.833 0.00 0.00 36.20 2.90
3771 3906 3.788708 TGGATTAGTCTCCTCTCTCCTCA 59.211 47.826 0.00 0.00 36.20 3.86
3772 3907 4.447138 TGGATTAGTCTCCTCTCTCCTC 57.553 50.000 0.00 0.00 36.20 3.71
3773 3908 6.734918 ATATGGATTAGTCTCCTCTCTCCT 57.265 41.667 0.00 0.00 36.20 3.69
3774 3909 7.790782 AAATATGGATTAGTCTCCTCTCTCC 57.209 40.000 0.00 0.00 36.20 3.71
3776 3911 9.890915 ACTAAAATATGGATTAGTCTCCTCTCT 57.109 33.333 4.01 0.00 37.73 3.10
3780 3915 9.327731 CCCTACTAAAATATGGATTAGTCTCCT 57.672 37.037 10.46 0.00 40.53 3.69
3781 3916 9.102453 ACCCTACTAAAATATGGATTAGTCTCC 57.898 37.037 10.46 0.00 40.53 3.71
3784 3919 9.722184 GGAACCCTACTAAAATATGGATTAGTC 57.278 37.037 10.46 0.22 40.53 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.