Multiple sequence alignment - TraesCS4B01G058100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G058100 chr4B 100.000 2972 0 0 1 2972 48913600 48916571 0.000000e+00 5489.0
1 TraesCS4B01G058100 chr4B 100.000 368 0 0 3199 3566 48916798 48917165 0.000000e+00 680.0
2 TraesCS4B01G058100 chr4B 92.821 195 12 1 59 251 409252748 409252942 7.540000e-72 281.0
3 TraesCS4B01G058100 chr4B 77.451 102 18 2 3454 3555 24678167 24678263 4.970000e-04 56.5
4 TraesCS4B01G058100 chr4D 94.639 2742 118 19 252 2968 34069852 34072589 0.000000e+00 4222.0
5 TraesCS4B01G058100 chr4D 96.552 58 1 1 1 58 34069803 34069859 1.050000e-15 95.3
6 TraesCS4B01G058100 chr4A 96.616 1714 54 2 897 2608 568509533 568507822 0.000000e+00 2841.0
7 TraesCS4B01G058100 chr4A 92.647 340 18 2 2613 2945 568507726 568507387 1.930000e-132 483.0
8 TraesCS4B01G058100 chr4A 87.273 275 25 8 429 700 568509984 568509717 4.470000e-79 305.0
9 TraesCS4B01G058100 chr4A 81.711 339 47 14 465 798 627506314 627506642 5.870000e-68 268.0
10 TraesCS4B01G058100 chr4A 82.266 203 26 9 571 768 56511919 56511722 2.200000e-37 167.0
11 TraesCS4B01G058100 chr4A 92.391 92 5 2 3285 3375 568506922 568506832 2.890000e-26 130.0
12 TraesCS4B01G058100 chr2D 82.073 463 63 17 254 708 476391864 476391414 9.350000e-101 377.0
13 TraesCS4B01G058100 chr7A 86.119 353 38 10 252 598 33445948 33446295 1.560000e-98 370.0
14 TraesCS4B01G058100 chr6A 80.535 411 54 20 266 665 1508690 1509085 3.480000e-75 292.0
15 TraesCS4B01G058100 chr6A 91.220 205 16 2 55 258 564986610 564986407 9.750000e-71 278.0
16 TraesCS4B01G058100 chr6A 80.495 323 44 18 348 663 389963941 389963631 2.770000e-56 230.0
17 TraesCS4B01G058100 chr2B 80.198 404 63 16 268 663 468232955 468232561 1.620000e-73 287.0
18 TraesCS4B01G058100 chr6B 92.462 199 12 2 57 252 600213575 600213377 7.540000e-72 281.0
19 TraesCS4B01G058100 chr6B 80.101 397 60 18 251 639 19811168 19811553 9.750000e-71 278.0
20 TraesCS4B01G058100 chr3A 91.707 205 14 2 59 261 431171114 431171317 7.540000e-72 281.0
21 TraesCS4B01G058100 chr3A 90.521 211 15 4 57 264 249083757 249083965 1.260000e-69 274.0
22 TraesCS4B01G058100 chr3A 100.000 29 0 0 2689 2717 704145687 704145715 2.000000e-03 54.7
23 TraesCS4B01G058100 chr5A 90.566 212 18 1 53 262 590534968 590534757 2.710000e-71 279.0
24 TraesCS4B01G058100 chr3D 91.960 199 14 1 57 253 25129772 25129970 9.750000e-71 278.0
25 TraesCS4B01G058100 chr5B 91.919 198 14 1 57 252 429107383 429107580 3.510000e-70 276.0
26 TraesCS4B01G058100 chr5B 83.173 208 23 9 570 766 2579090 2579296 2.830000e-41 180.0
27 TraesCS4B01G058100 chr7D 79.612 412 59 21 294 695 58791680 58791284 4.540000e-69 272.0
28 TraesCS4B01G058100 chr7D 91.398 93 8 0 2433 2525 77086952 77086860 1.040000e-25 128.0
29 TraesCS4B01G058100 chr7B 90.338 207 18 1 54 258 518873530 518873324 1.630000e-68 270.0
30 TraesCS4B01G058100 chr3B 79.339 363 62 12 299 654 123031948 123031592 3.560000e-60 243.0
31 TraesCS4B01G058100 chr3B 100.000 29 0 0 2689 2717 735803740 735803768 2.000000e-03 54.7
32 TraesCS4B01G058100 chr5D 82.178 202 29 7 572 768 80816142 80815943 2.200000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G058100 chr4B 48913600 48917165 3565 False 3084.50 5489 100.00000 1 3566 2 chr4B.!!$F3 3565
1 TraesCS4B01G058100 chr4D 34069803 34072589 2786 False 2158.65 4222 95.59550 1 2968 2 chr4D.!!$F1 2967
2 TraesCS4B01G058100 chr4A 568506832 568509984 3152 True 939.75 2841 92.23175 429 3375 4 chr4A.!!$R2 2946

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
115 116 0.249322 GGCTTGCGAGTAGGCGATTA 60.249 55.000 2.14 0.0 35.06 1.75 F
194 195 0.622136 TCAGCTACTCGGTGACCCTA 59.378 55.000 0.00 0.0 44.63 3.53 F
219 220 0.916086 AGGGGTTAATCGGCATGTCA 59.084 50.000 0.00 0.0 0.00 3.58 F
220 221 1.283613 AGGGGTTAATCGGCATGTCAA 59.716 47.619 0.00 0.0 0.00 3.18 F
221 222 1.404035 GGGGTTAATCGGCATGTCAAC 59.596 52.381 0.00 0.0 0.00 3.18 F
996 1067 1.629297 CCTCTCCTTCCTAGGCCCT 59.371 63.158 2.96 0.0 41.69 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1540 1614 1.208293 TGCCATTCACGGTACATAGCA 59.792 47.619 0.00 0.0 0.00 3.49 R
1797 1873 1.406539 AGCAAACAGAACAAGCACCAG 59.593 47.619 0.00 0.0 0.00 4.00 R
1854 1930 6.795098 TGTGATACAAGTGCTAAAATTCGT 57.205 33.333 0.00 0.0 0.00 3.85 R
1947 2023 7.566569 TCTACTCTACTCTACAAGCATAGTGT 58.433 38.462 0.00 0.0 34.26 3.55 R
2357 2437 2.107378 TCACCAACTTCCACCTGCAATA 59.893 45.455 0.00 0.0 0.00 1.90 R
2674 2846 1.202417 AGTTGTCGCTCCGGATGTATG 60.202 52.381 3.57 0.0 0.00 2.39 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 7.712264 TTTTAAATGCTTGACCATTGTTGAG 57.288 32.000 0.00 0.00 35.70 3.02
68 69 3.947910 AATGCTTGACCATTGTTGAGG 57.052 42.857 0.00 0.00 34.32 3.86
69 70 2.655090 TGCTTGACCATTGTTGAGGA 57.345 45.000 0.00 0.00 0.00 3.71
70 71 2.942804 TGCTTGACCATTGTTGAGGAA 58.057 42.857 0.00 0.00 0.00 3.36
71 72 3.295093 TGCTTGACCATTGTTGAGGAAA 58.705 40.909 0.00 0.00 0.00 3.13
72 73 3.896888 TGCTTGACCATTGTTGAGGAAAT 59.103 39.130 0.00 0.00 0.00 2.17
73 74 4.022068 TGCTTGACCATTGTTGAGGAAATC 60.022 41.667 0.00 0.00 0.00 2.17
74 75 4.726416 CTTGACCATTGTTGAGGAAATCG 58.274 43.478 0.00 0.00 0.00 3.34
75 76 3.750371 TGACCATTGTTGAGGAAATCGT 58.250 40.909 0.00 0.00 0.00 3.73
76 77 4.141287 TGACCATTGTTGAGGAAATCGTT 58.859 39.130 0.00 0.00 0.00 3.85
77 78 5.309638 TGACCATTGTTGAGGAAATCGTTA 58.690 37.500 0.00 0.00 0.00 3.18
78 79 5.765677 TGACCATTGTTGAGGAAATCGTTAA 59.234 36.000 0.00 0.00 0.00 2.01
79 80 6.009115 ACCATTGTTGAGGAAATCGTTAAC 57.991 37.500 0.00 0.00 32.93 2.01
80 81 5.768164 ACCATTGTTGAGGAAATCGTTAACT 59.232 36.000 3.71 0.00 33.31 2.24
81 82 6.086222 CCATTGTTGAGGAAATCGTTAACTG 58.914 40.000 3.71 0.00 33.31 3.16
82 83 5.682943 TTGTTGAGGAAATCGTTAACTGG 57.317 39.130 3.71 0.00 33.31 4.00
83 84 4.710324 TGTTGAGGAAATCGTTAACTGGT 58.290 39.130 3.71 0.00 33.31 4.00
84 85 5.856156 TGTTGAGGAAATCGTTAACTGGTA 58.144 37.500 3.71 0.00 33.31 3.25
85 86 5.929992 TGTTGAGGAAATCGTTAACTGGTAG 59.070 40.000 3.71 0.00 33.31 3.18
86 87 4.501071 TGAGGAAATCGTTAACTGGTAGC 58.499 43.478 3.71 0.00 0.00 3.58
87 88 4.222145 TGAGGAAATCGTTAACTGGTAGCT 59.778 41.667 3.71 0.00 0.00 3.32
88 89 4.504858 AGGAAATCGTTAACTGGTAGCTG 58.495 43.478 3.71 0.00 0.00 4.24
89 90 3.063588 GGAAATCGTTAACTGGTAGCTGC 59.936 47.826 3.71 0.00 0.00 5.25
90 91 3.611766 AATCGTTAACTGGTAGCTGCT 57.388 42.857 7.57 7.57 0.00 4.24
91 92 2.649331 TCGTTAACTGGTAGCTGCTC 57.351 50.000 4.91 0.00 0.00 4.26
92 93 1.135489 TCGTTAACTGGTAGCTGCTCG 60.135 52.381 4.91 0.00 0.00 5.03
93 94 1.641577 GTTAACTGGTAGCTGCTCGG 58.358 55.000 4.91 0.00 0.00 4.63
94 95 1.067071 GTTAACTGGTAGCTGCTCGGT 60.067 52.381 4.91 0.41 0.00 4.69
95 96 1.263356 TAACTGGTAGCTGCTCGGTT 58.737 50.000 16.67 16.67 34.74 4.44
96 97 0.320771 AACTGGTAGCTGCTCGGTTG 60.321 55.000 4.91 0.00 0.00 3.77
97 98 1.448540 CTGGTAGCTGCTCGGTTGG 60.449 63.158 4.91 0.00 0.00 3.77
98 99 2.820037 GGTAGCTGCTCGGTTGGC 60.820 66.667 4.91 0.00 0.00 4.52
99 100 2.266055 GTAGCTGCTCGGTTGGCT 59.734 61.111 4.91 0.00 38.62 4.75
100 101 1.376037 GTAGCTGCTCGGTTGGCTT 60.376 57.895 4.91 0.00 36.40 4.35
101 102 1.375908 TAGCTGCTCGGTTGGCTTG 60.376 57.895 4.91 0.00 36.40 4.01
102 103 4.410743 GCTGCTCGGTTGGCTTGC 62.411 66.667 0.00 0.00 0.00 4.01
103 104 4.093952 CTGCTCGGTTGGCTTGCG 62.094 66.667 0.00 0.00 0.00 4.85
104 105 4.617520 TGCTCGGTTGGCTTGCGA 62.618 61.111 0.00 0.00 0.00 5.10
105 106 3.793144 GCTCGGTTGGCTTGCGAG 61.793 66.667 0.00 0.00 0.00 5.03
106 107 2.357517 CTCGGTTGGCTTGCGAGT 60.358 61.111 2.14 0.00 0.00 4.18
107 108 1.080093 CTCGGTTGGCTTGCGAGTA 60.080 57.895 2.14 0.00 0.00 2.59
108 109 1.078759 CTCGGTTGGCTTGCGAGTAG 61.079 60.000 2.14 0.00 0.00 2.57
109 110 2.100631 CGGTTGGCTTGCGAGTAGG 61.101 63.158 2.14 0.00 0.00 3.18
110 111 2.399356 GGTTGGCTTGCGAGTAGGC 61.399 63.158 2.14 0.00 38.56 3.93
111 112 2.434185 TTGGCTTGCGAGTAGGCG 60.434 61.111 2.14 0.00 40.77 5.52
112 113 2.938086 TTGGCTTGCGAGTAGGCGA 61.938 57.895 2.14 0.00 40.77 5.54
113 114 2.107141 GGCTTGCGAGTAGGCGAT 59.893 61.111 2.14 0.00 35.06 4.58
114 115 1.521681 GGCTTGCGAGTAGGCGATT 60.522 57.895 2.14 0.00 35.06 3.34
115 116 0.249322 GGCTTGCGAGTAGGCGATTA 60.249 55.000 2.14 0.00 35.06 1.75
116 117 1.567504 GCTTGCGAGTAGGCGATTAA 58.432 50.000 2.14 0.00 35.06 1.40
117 118 2.135933 GCTTGCGAGTAGGCGATTAAT 58.864 47.619 2.14 0.00 35.06 1.40
118 119 3.314553 GCTTGCGAGTAGGCGATTAATA 58.685 45.455 2.14 0.00 35.06 0.98
119 120 3.365220 GCTTGCGAGTAGGCGATTAATAG 59.635 47.826 2.14 0.00 35.06 1.73
120 121 3.570926 TGCGAGTAGGCGATTAATAGG 57.429 47.619 0.00 0.00 35.06 2.57
121 122 2.260481 GCGAGTAGGCGATTAATAGGC 58.740 52.381 13.27 13.27 0.00 3.93
122 123 2.094649 GCGAGTAGGCGATTAATAGGCT 60.095 50.000 24.21 24.21 45.47 4.58
123 124 3.614390 GCGAGTAGGCGATTAATAGGCTT 60.614 47.826 25.53 12.00 43.27 4.35
124 125 4.167268 CGAGTAGGCGATTAATAGGCTTC 58.833 47.826 25.53 20.88 43.27 3.86
125 126 4.167268 GAGTAGGCGATTAATAGGCTTCG 58.833 47.826 25.53 9.42 43.27 3.79
126 127 2.457366 AGGCGATTAATAGGCTTCGG 57.543 50.000 17.20 0.00 40.53 4.30
128 129 1.508632 GCGATTAATAGGCTTCGGCA 58.491 50.000 7.56 0.00 43.96 5.69
129 130 2.076863 GCGATTAATAGGCTTCGGCAT 58.923 47.619 7.56 0.00 43.96 4.40
130 131 2.159653 GCGATTAATAGGCTTCGGCATG 60.160 50.000 7.56 0.00 43.96 4.06
131 132 3.067106 CGATTAATAGGCTTCGGCATGT 58.933 45.455 0.00 0.00 43.96 3.21
132 133 3.498397 CGATTAATAGGCTTCGGCATGTT 59.502 43.478 0.00 0.00 43.96 2.71
133 134 4.688879 CGATTAATAGGCTTCGGCATGTTA 59.311 41.667 0.00 0.00 43.96 2.41
134 135 5.178623 CGATTAATAGGCTTCGGCATGTTAA 59.821 40.000 0.00 6.94 46.23 2.01
136 137 6.952773 TTAATAGGCTTCGGCATGTTAATT 57.047 33.333 0.00 0.00 41.02 1.40
137 138 4.836125 ATAGGCTTCGGCATGTTAATTG 57.164 40.909 0.00 0.00 43.96 2.32
138 139 1.750778 AGGCTTCGGCATGTTAATTGG 59.249 47.619 0.00 0.00 43.96 3.16
139 140 1.559831 GCTTCGGCATGTTAATTGGC 58.440 50.000 0.00 5.23 41.33 4.52
140 141 1.802508 GCTTCGGCATGTTAATTGGCC 60.803 52.381 0.00 0.00 42.98 5.36
141 142 1.476085 CTTCGGCATGTTAATTGGCCA 59.524 47.619 0.00 0.00 46.75 5.36
142 143 1.774110 TCGGCATGTTAATTGGCCAT 58.226 45.000 6.09 0.00 46.75 4.40
143 144 2.106566 TCGGCATGTTAATTGGCCATT 58.893 42.857 6.09 0.00 46.75 3.16
144 145 2.499289 TCGGCATGTTAATTGGCCATTT 59.501 40.909 16.62 16.62 46.75 2.32
145 146 3.701542 TCGGCATGTTAATTGGCCATTTA 59.298 39.130 6.09 11.58 46.75 1.40
146 147 4.160439 TCGGCATGTTAATTGGCCATTTAA 59.840 37.500 22.88 22.88 46.75 1.52
147 148 5.055812 CGGCATGTTAATTGGCCATTTAAT 58.944 37.500 27.10 15.03 46.75 1.40
148 149 5.177327 CGGCATGTTAATTGGCCATTTAATC 59.823 40.000 27.10 21.45 46.75 1.75
149 150 6.054295 GGCATGTTAATTGGCCATTTAATCA 58.946 36.000 27.10 24.66 45.70 2.57
150 151 6.541641 GGCATGTTAATTGGCCATTTAATCAA 59.458 34.615 27.10 18.97 45.70 2.57
151 152 7.229106 GGCATGTTAATTGGCCATTTAATCAAT 59.771 33.333 27.10 19.93 45.70 2.57
152 153 8.623030 GCATGTTAATTGGCCATTTAATCAATT 58.377 29.630 27.10 15.60 41.11 2.32
161 162 9.730705 TTGGCCATTTAATCAATTAATCAAACA 57.269 25.926 6.09 0.00 32.78 2.83
162 163 9.730705 TGGCCATTTAATCAATTAATCAAACAA 57.269 25.926 0.00 0.00 32.78 2.83
185 186 8.612619 ACAATTTATTGGTTTATCAGCTACTCG 58.387 33.333 7.33 0.00 41.96 4.18
186 187 7.730364 ATTTATTGGTTTATCAGCTACTCGG 57.270 36.000 0.00 0.00 0.00 4.63
187 188 4.755266 ATTGGTTTATCAGCTACTCGGT 57.245 40.909 0.00 0.00 0.00 4.69
188 189 3.520290 TGGTTTATCAGCTACTCGGTG 57.480 47.619 0.00 0.00 42.42 4.94
192 193 4.013702 TCAGCTACTCGGTGACCC 57.986 61.111 0.00 0.00 44.63 4.46
193 194 1.383019 TCAGCTACTCGGTGACCCT 59.617 57.895 0.00 0.00 44.63 4.34
194 195 0.622136 TCAGCTACTCGGTGACCCTA 59.378 55.000 0.00 0.00 44.63 3.53
195 196 1.214673 TCAGCTACTCGGTGACCCTAT 59.785 52.381 0.00 0.00 44.63 2.57
196 197 1.338337 CAGCTACTCGGTGACCCTATG 59.662 57.143 0.00 0.00 43.75 2.23
197 198 1.214673 AGCTACTCGGTGACCCTATGA 59.785 52.381 0.00 0.00 0.00 2.15
198 199 1.609555 GCTACTCGGTGACCCTATGAG 59.390 57.143 0.00 0.00 0.00 2.90
199 200 2.933573 CTACTCGGTGACCCTATGAGT 58.066 52.381 13.18 13.18 42.22 3.41
200 201 3.746751 GCTACTCGGTGACCCTATGAGTA 60.747 52.174 13.87 13.87 40.22 2.59
201 202 2.933573 ACTCGGTGACCCTATGAGTAG 58.066 52.381 7.93 0.00 38.09 2.57
202 203 2.231529 CTCGGTGACCCTATGAGTAGG 58.768 57.143 0.00 0.00 46.03 3.18
212 213 4.803098 CCTATGAGTAGGGGTTAATCGG 57.197 50.000 0.00 0.00 43.26 4.18
213 214 3.056035 CCTATGAGTAGGGGTTAATCGGC 60.056 52.174 0.00 0.00 43.26 5.54
214 215 1.868713 TGAGTAGGGGTTAATCGGCA 58.131 50.000 0.00 0.00 0.00 5.69
215 216 2.404559 TGAGTAGGGGTTAATCGGCAT 58.595 47.619 0.00 0.00 0.00 4.40
216 217 2.104111 TGAGTAGGGGTTAATCGGCATG 59.896 50.000 0.00 0.00 0.00 4.06
217 218 2.104281 GAGTAGGGGTTAATCGGCATGT 59.896 50.000 0.00 0.00 0.00 3.21
218 219 2.104281 AGTAGGGGTTAATCGGCATGTC 59.896 50.000 0.00 0.00 0.00 3.06
219 220 0.916086 AGGGGTTAATCGGCATGTCA 59.084 50.000 0.00 0.00 0.00 3.58
220 221 1.283613 AGGGGTTAATCGGCATGTCAA 59.716 47.619 0.00 0.00 0.00 3.18
221 222 1.404035 GGGGTTAATCGGCATGTCAAC 59.596 52.381 0.00 0.00 0.00 3.18
222 223 2.365582 GGGTTAATCGGCATGTCAACT 58.634 47.619 0.00 0.00 0.00 3.16
223 224 2.097466 GGGTTAATCGGCATGTCAACTG 59.903 50.000 0.00 0.00 0.00 3.16
224 225 2.097466 GGTTAATCGGCATGTCAACTGG 59.903 50.000 0.00 0.00 0.00 4.00
225 226 2.747446 GTTAATCGGCATGTCAACTGGT 59.253 45.455 0.00 0.00 0.00 4.00
226 227 1.909700 AATCGGCATGTCAACTGGTT 58.090 45.000 0.00 0.00 0.00 3.67
227 228 2.779755 ATCGGCATGTCAACTGGTTA 57.220 45.000 0.00 0.00 0.00 2.85
228 229 2.552599 TCGGCATGTCAACTGGTTAA 57.447 45.000 0.00 0.00 0.00 2.01
229 230 3.066291 TCGGCATGTCAACTGGTTAAT 57.934 42.857 0.00 0.00 0.00 1.40
230 231 3.006940 TCGGCATGTCAACTGGTTAATC 58.993 45.455 0.00 0.00 0.00 1.75
231 232 2.746904 CGGCATGTCAACTGGTTAATCA 59.253 45.455 0.00 0.00 0.00 2.57
232 233 3.181507 CGGCATGTCAACTGGTTAATCAG 60.182 47.826 14.35 14.35 40.40 2.90
233 234 4.009675 GGCATGTCAACTGGTTAATCAGA 58.990 43.478 22.55 0.00 38.11 3.27
234 235 4.142600 GGCATGTCAACTGGTTAATCAGAC 60.143 45.833 22.55 10.78 38.11 3.51
235 236 4.436050 GCATGTCAACTGGTTAATCAGACG 60.436 45.833 22.55 12.01 38.11 4.18
236 237 4.594123 TGTCAACTGGTTAATCAGACGA 57.406 40.909 22.55 14.04 38.11 4.20
237 238 4.951254 TGTCAACTGGTTAATCAGACGAA 58.049 39.130 22.55 2.14 38.11 3.85
238 239 5.547465 TGTCAACTGGTTAATCAGACGAAT 58.453 37.500 22.55 0.00 38.11 3.34
239 240 5.995282 TGTCAACTGGTTAATCAGACGAATT 59.005 36.000 22.55 2.76 38.11 2.17
240 241 6.147164 TGTCAACTGGTTAATCAGACGAATTC 59.853 38.462 22.55 6.93 38.11 2.17
241 242 6.369065 GTCAACTGGTTAATCAGACGAATTCT 59.631 38.462 22.55 0.00 38.11 2.40
242 243 6.934645 TCAACTGGTTAATCAGACGAATTCTT 59.065 34.615 22.55 0.54 38.11 2.52
243 244 6.727824 ACTGGTTAATCAGACGAATTCTTG 57.272 37.500 22.55 0.00 38.11 3.02
244 245 6.464222 ACTGGTTAATCAGACGAATTCTTGA 58.536 36.000 22.55 5.39 38.11 3.02
245 246 6.934645 ACTGGTTAATCAGACGAATTCTTGAA 59.065 34.615 22.55 0.00 38.11 2.69
246 247 7.095187 ACTGGTTAATCAGACGAATTCTTGAAC 60.095 37.037 22.55 1.31 38.11 3.18
247 248 6.708502 TGGTTAATCAGACGAATTCTTGAACA 59.291 34.615 3.52 0.00 28.96 3.18
248 249 7.095229 TGGTTAATCAGACGAATTCTTGAACAG 60.095 37.037 3.52 0.00 28.96 3.16
249 250 5.869753 AATCAGACGAATTCTTGAACAGG 57.130 39.130 3.52 0.00 28.96 4.00
250 251 3.664107 TCAGACGAATTCTTGAACAGGG 58.336 45.455 3.52 0.00 28.96 4.45
251 252 3.071023 TCAGACGAATTCTTGAACAGGGT 59.929 43.478 3.52 0.00 28.96 4.34
252 253 3.187227 CAGACGAATTCTTGAACAGGGTG 59.813 47.826 3.52 0.00 28.96 4.61
253 254 1.880027 ACGAATTCTTGAACAGGGTGC 59.120 47.619 3.52 0.00 0.00 5.01
254 255 2.154462 CGAATTCTTGAACAGGGTGCT 58.846 47.619 3.52 0.00 0.00 4.40
255 256 2.554032 CGAATTCTTGAACAGGGTGCTT 59.446 45.455 3.52 0.00 0.00 3.91
256 257 3.610114 CGAATTCTTGAACAGGGTGCTTG 60.610 47.826 3.52 0.00 0.00 4.01
257 258 2.727123 TTCTTGAACAGGGTGCTTGA 57.273 45.000 0.00 0.00 0.00 3.02
258 259 2.727123 TCTTGAACAGGGTGCTTGAA 57.273 45.000 0.00 0.00 0.00 2.69
375 378 8.465999 ACATTCTTCAAACACTTGTTCAACATA 58.534 29.630 0.00 0.00 37.25 2.29
387 390 9.409312 CACTTGTTCAACATATTTTTAGATGCA 57.591 29.630 0.00 0.00 0.00 3.96
499 503 9.434420 CTCCCAAATGCTTGATTAACATTTTTA 57.566 29.630 0.00 0.00 40.94 1.52
592 597 8.621532 ACTCATTCTTTTAATAAGTGCTCACA 57.378 30.769 2.63 0.00 0.00 3.58
623 630 4.223320 ACACATTCAACATTGTCCGAAC 57.777 40.909 4.31 0.00 0.00 3.95
996 1067 1.629297 CCTCTCCTTCCTAGGCCCT 59.371 63.158 2.96 0.00 41.69 5.19
1345 1419 3.564347 AACCCTCCGGCTCCTCCTT 62.564 63.158 0.00 0.00 0.00 3.36
1454 1528 5.629079 AATTAGCAGCAAGTTAGTTGGAC 57.371 39.130 1.75 0.00 36.56 4.02
1540 1614 6.703165 GTCCAAATCTGATGTTTGAGCTTTTT 59.297 34.615 5.52 0.00 38.51 1.94
1678 1752 7.435068 TTCTCACTTAACTTATGGAAGCAAC 57.565 36.000 0.00 0.00 35.97 4.17
1776 1852 2.963101 TCTTCTTCTGTTCCTGTCGGAA 59.037 45.455 0.00 0.00 46.90 4.30
1797 1873 8.128582 TCGGAAATAACATATTGCTTCATGAAC 58.871 33.333 3.38 2.70 0.00 3.18
1890 1966 8.400947 GCACTTGTATCACATTTCTATCACATT 58.599 33.333 0.00 0.00 0.00 2.71
1919 1995 3.181434 TGATGGTTTTGCTACAACCCTCT 60.181 43.478 14.15 1.47 42.86 3.69
1947 2023 7.901029 TCAAGTTAATAAAACCATTGGCATCA 58.099 30.769 1.54 0.00 0.00 3.07
1988 2064 3.929610 GAGTAGATATTGAAGGATGCGCC 59.070 47.826 4.18 0.00 0.00 6.53
2337 2417 8.190122 TGGAACTATTCATTGACATTGCATTAC 58.810 33.333 0.00 0.00 0.00 1.89
2415 2495 7.021790 GGTTAACTGAAGTAATAAGCAACTGC 58.978 38.462 5.42 0.00 42.49 4.40
2422 2502 2.549633 AATAAGCAACTGCGATGCAC 57.450 45.000 10.28 0.00 46.22 4.57
2462 2542 1.039856 GAAGGGCCAGAAAGTTTGCA 58.960 50.000 6.18 0.00 0.00 4.08
2551 2631 3.578716 GCAGCCCTGAGGACACTAATATA 59.421 47.826 0.00 0.00 33.47 0.86
2580 2661 3.070878 TGTCTGAACTGCTGGTGACATAA 59.929 43.478 0.00 0.00 41.51 1.90
2611 2783 5.009631 TGCAGGGAACTACGTAGTTAGTAA 58.990 41.667 34.51 18.49 45.84 2.24
2621 2793 7.115414 ACTACGTAGTTAGTAAGGAGGATGTT 58.885 38.462 22.45 0.00 37.78 2.71
2660 2832 2.816411 TGGGACATACTTCTTCCGTCT 58.184 47.619 0.00 0.00 0.00 4.18
2674 2846 5.888105 TCTTCCGTCTGTAAATAGTGCTAC 58.112 41.667 0.00 0.00 0.00 3.58
2700 2875 1.134907 TCCGGAGCGACAACTAATTCC 60.135 52.381 0.00 0.00 0.00 3.01
3238 3417 7.716799 ATAAAGCAACTCATGGTCCAAATAA 57.283 32.000 0.00 0.00 39.29 1.40
3254 3434 8.236586 GGTCCAAATAATTTTGCATTTTCTTCC 58.763 33.333 0.00 0.00 40.77 3.46
3255 3435 7.956943 GTCCAAATAATTTTGCATTTTCTTCCG 59.043 33.333 0.00 0.00 40.77 4.30
3256 3436 7.875041 TCCAAATAATTTTGCATTTTCTTCCGA 59.125 29.630 0.00 0.00 40.77 4.55
3257 3437 8.667463 CCAAATAATTTTGCATTTTCTTCCGAT 58.333 29.630 0.00 0.00 40.77 4.18
3270 3657 7.615582 TTTTCTTCCGATCTAAGACGTACTA 57.384 36.000 6.83 0.00 32.81 1.82
3271 3658 7.798596 TTTCTTCCGATCTAAGACGTACTAT 57.201 36.000 6.83 0.00 32.81 2.12
3273 3660 6.757237 TCTTCCGATCTAAGACGTACTATCT 58.243 40.000 0.00 0.00 0.00 1.98
3274 3661 6.645827 TCTTCCGATCTAAGACGTACTATCTG 59.354 42.308 0.00 0.00 0.00 2.90
3275 3662 6.094193 TCCGATCTAAGACGTACTATCTGA 57.906 41.667 0.00 0.00 0.00 3.27
3277 3664 7.834803 TCCGATCTAAGACGTACTATCTGATA 58.165 38.462 0.00 0.00 0.00 2.15
3278 3665 8.309656 TCCGATCTAAGACGTACTATCTGATAA 58.690 37.037 0.00 0.00 0.00 1.75
3298 3845 7.495901 TGATAAATTGGTTGTTGAAGCAGAAA 58.504 30.769 0.00 0.00 40.57 2.52
3349 3897 1.205417 GCCCATTTGGTGATGTTCAGG 59.795 52.381 0.00 0.00 36.04 3.86
3353 3901 4.339247 CCCATTTGGTGATGTTCAGGATAC 59.661 45.833 0.00 0.00 0.00 2.24
3375 3923 4.465305 ACGCTTATACCTTTGGACACTAGT 59.535 41.667 0.00 0.00 0.00 2.57
3376 3924 5.653769 ACGCTTATACCTTTGGACACTAGTA 59.346 40.000 0.00 0.00 0.00 1.82
3377 3925 6.323225 ACGCTTATACCTTTGGACACTAGTAT 59.677 38.462 0.00 0.00 0.00 2.12
3378 3926 7.503566 ACGCTTATACCTTTGGACACTAGTATA 59.496 37.037 0.00 0.00 0.00 1.47
3379 3927 8.021973 CGCTTATACCTTTGGACACTAGTATAG 58.978 40.741 0.00 0.00 46.50 1.31
3396 3944 8.703604 CTAGTATAGTGCAAACTTCAGCTTAA 57.296 34.615 0.00 0.00 32.85 1.85
3397 3945 7.979444 AGTATAGTGCAAACTTCAGCTTAAA 57.021 32.000 0.00 0.00 0.00 1.52
3398 3946 8.034058 AGTATAGTGCAAACTTCAGCTTAAAG 57.966 34.615 4.42 4.42 0.00 1.85
3399 3947 7.878127 AGTATAGTGCAAACTTCAGCTTAAAGA 59.122 33.333 11.64 0.00 0.00 2.52
3400 3948 5.429957 AGTGCAAACTTCAGCTTAAAGAG 57.570 39.130 11.64 3.86 0.00 2.85
3401 3949 4.276926 AGTGCAAACTTCAGCTTAAAGAGG 59.723 41.667 11.64 0.00 0.00 3.69
3402 3950 4.036852 GTGCAAACTTCAGCTTAAAGAGGT 59.963 41.667 11.64 0.00 36.26 3.85
3403 3951 5.238650 GTGCAAACTTCAGCTTAAAGAGGTA 59.761 40.000 11.64 0.00 33.99 3.08
3404 3952 5.238650 TGCAAACTTCAGCTTAAAGAGGTAC 59.761 40.000 11.64 0.00 33.99 3.34
3405 3953 5.334957 GCAAACTTCAGCTTAAAGAGGTACC 60.335 44.000 2.73 2.73 33.99 3.34
3406 3954 4.554960 ACTTCAGCTTAAAGAGGTACCC 57.445 45.455 8.74 0.00 33.99 3.69
3407 3955 3.263681 ACTTCAGCTTAAAGAGGTACCCC 59.736 47.826 8.74 0.00 33.99 4.95
3408 3956 1.829222 TCAGCTTAAAGAGGTACCCCG 59.171 52.381 8.74 0.00 33.99 5.73
3409 3957 1.829222 CAGCTTAAAGAGGTACCCCGA 59.171 52.381 8.74 0.00 33.99 5.14
3410 3958 2.235402 CAGCTTAAAGAGGTACCCCGAA 59.765 50.000 8.74 0.00 33.99 4.30
3411 3959 2.500504 AGCTTAAAGAGGTACCCCGAAG 59.499 50.000 8.74 6.76 33.44 3.79
3412 3960 4.701773 AGCTTAAAGAGGTACCCCGAAGG 61.702 52.174 8.74 0.00 40.71 3.46
3413 3961 6.907802 AGCTTAAAGAGGTACCCCGAAGGA 62.908 50.000 8.74 0.00 42.96 3.36
3442 3990 5.685841 CGTTCCACGAAATCACTAAATTGT 58.314 37.500 0.00 0.00 46.05 2.71
3443 3991 5.563751 CGTTCCACGAAATCACTAAATTGTG 59.436 40.000 0.00 0.00 46.05 3.33
3444 3992 5.621197 TCCACGAAATCACTAAATTGTGG 57.379 39.130 4.92 4.92 45.34 4.17
3445 3993 4.457603 TCCACGAAATCACTAAATTGTGGG 59.542 41.667 10.33 0.00 44.38 4.61
3446 3994 4.380444 CCACGAAATCACTAAATTGTGGGG 60.380 45.833 3.56 0.00 41.41 4.96
3447 3995 3.192633 ACGAAATCACTAAATTGTGGGGC 59.807 43.478 0.00 0.00 38.40 5.80
3448 3996 3.192422 CGAAATCACTAAATTGTGGGGCA 59.808 43.478 0.00 0.00 38.40 5.36
3449 3997 4.494484 GAAATCACTAAATTGTGGGGCAC 58.506 43.478 0.00 0.00 38.40 5.01
3466 4014 1.496934 CACCGGTTGCAAAAATCACC 58.503 50.000 2.97 0.00 0.00 4.02
3467 4015 0.391228 ACCGGTTGCAAAAATCACCC 59.609 50.000 0.00 0.00 0.00 4.61
3468 4016 0.678950 CCGGTTGCAAAAATCACCCT 59.321 50.000 0.00 0.00 0.00 4.34
3469 4017 1.336795 CCGGTTGCAAAAATCACCCTC 60.337 52.381 0.00 0.00 0.00 4.30
3470 4018 1.665735 CGGTTGCAAAAATCACCCTCG 60.666 52.381 0.00 0.00 0.00 4.63
3471 4019 1.418373 GTTGCAAAAATCACCCTCGC 58.582 50.000 0.00 0.00 0.00 5.03
3472 4020 0.316841 TTGCAAAAATCACCCTCGCC 59.683 50.000 0.00 0.00 0.00 5.54
3473 4021 0.539438 TGCAAAAATCACCCTCGCCT 60.539 50.000 0.00 0.00 0.00 5.52
3474 4022 0.603065 GCAAAAATCACCCTCGCCTT 59.397 50.000 0.00 0.00 0.00 4.35
3475 4023 1.402852 GCAAAAATCACCCTCGCCTTC 60.403 52.381 0.00 0.00 0.00 3.46
3476 4024 2.162681 CAAAAATCACCCTCGCCTTCT 58.837 47.619 0.00 0.00 0.00 2.85
3477 4025 2.115343 AAAATCACCCTCGCCTTCTC 57.885 50.000 0.00 0.00 0.00 2.87
3478 4026 1.280457 AAATCACCCTCGCCTTCTCT 58.720 50.000 0.00 0.00 0.00 3.10
3479 4027 0.827368 AATCACCCTCGCCTTCTCTC 59.173 55.000 0.00 0.00 0.00 3.20
3480 4028 1.388065 ATCACCCTCGCCTTCTCTCG 61.388 60.000 0.00 0.00 0.00 4.04
3481 4029 2.035940 ACCCTCGCCTTCTCTCGT 59.964 61.111 0.00 0.00 0.00 4.18
3482 4030 2.344203 ACCCTCGCCTTCTCTCGTG 61.344 63.158 0.00 0.00 0.00 4.35
3483 4031 2.492090 CCTCGCCTTCTCTCGTGG 59.508 66.667 0.00 0.00 33.88 4.94
3484 4032 2.344203 CCTCGCCTTCTCTCGTGGT 61.344 63.158 0.00 0.00 35.40 4.16
3485 4033 1.153939 CTCGCCTTCTCTCGTGGTG 60.154 63.158 0.00 0.00 0.00 4.17
3486 4034 1.587043 CTCGCCTTCTCTCGTGGTGA 61.587 60.000 0.00 0.00 37.95 4.02
3487 4035 1.444553 CGCCTTCTCTCGTGGTGAC 60.445 63.158 0.00 0.00 33.56 3.67
3488 4036 1.666011 GCCTTCTCTCGTGGTGACA 59.334 57.895 0.00 0.00 38.70 3.58
3489 4037 0.033504 GCCTTCTCTCGTGGTGACAA 59.966 55.000 0.00 0.00 46.06 3.18
3490 4038 1.937108 GCCTTCTCTCGTGGTGACAAG 60.937 57.143 0.00 0.00 46.06 3.16
3491 4039 1.341531 CCTTCTCTCGTGGTGACAAGT 59.658 52.381 0.00 0.00 46.06 3.16
3492 4040 2.398498 CTTCTCTCGTGGTGACAAGTG 58.602 52.381 0.00 0.00 46.06 3.16
3493 4041 0.673985 TCTCTCGTGGTGACAAGTGG 59.326 55.000 0.00 0.00 46.06 4.00
3494 4042 0.389391 CTCTCGTGGTGACAAGTGGT 59.611 55.000 0.00 0.00 46.06 4.16
3495 4043 1.611977 CTCTCGTGGTGACAAGTGGTA 59.388 52.381 0.00 0.00 46.06 3.25
3496 4044 1.338973 TCTCGTGGTGACAAGTGGTAC 59.661 52.381 0.00 0.00 46.06 3.34
3497 4045 1.067974 CTCGTGGTGACAAGTGGTACA 59.932 52.381 0.00 0.00 46.06 2.90
3508 4056 3.964718 TGGTACACTGCATGCACG 58.035 55.556 18.46 15.38 0.00 5.34
3509 4057 2.324330 TGGTACACTGCATGCACGC 61.324 57.895 18.46 0.00 0.00 5.34
3510 4058 2.480555 GTACACTGCATGCACGCC 59.519 61.111 18.46 1.76 0.00 5.68
3511 4059 2.031768 TACACTGCATGCACGCCA 59.968 55.556 18.46 0.00 0.00 5.69
3512 4060 2.324330 TACACTGCATGCACGCCAC 61.324 57.895 18.46 0.00 0.00 5.01
3513 4061 2.730066 TACACTGCATGCACGCCACT 62.730 55.000 18.46 0.00 0.00 4.00
3514 4062 2.595463 ACTGCATGCACGCCACTT 60.595 55.556 18.46 0.00 0.00 3.16
3515 4063 1.302431 ACTGCATGCACGCCACTTA 60.302 52.632 18.46 0.00 0.00 2.24
3516 4064 0.677731 ACTGCATGCACGCCACTTAT 60.678 50.000 18.46 0.00 0.00 1.73
3517 4065 0.028505 CTGCATGCACGCCACTTATC 59.971 55.000 18.46 0.00 0.00 1.75
3518 4066 1.010797 GCATGCACGCCACTTATCG 60.011 57.895 14.21 0.00 0.00 2.92
3519 4067 1.010797 CATGCACGCCACTTATCGC 60.011 57.895 0.00 0.00 0.00 4.58
3520 4068 1.449423 ATGCACGCCACTTATCGCA 60.449 52.632 0.00 0.00 0.00 5.10
3521 4069 1.024046 ATGCACGCCACTTATCGCAA 61.024 50.000 0.00 0.00 32.38 4.85
3522 4070 1.226018 GCACGCCACTTATCGCAAC 60.226 57.895 0.00 0.00 0.00 4.17
3523 4071 1.423845 CACGCCACTTATCGCAACC 59.576 57.895 0.00 0.00 0.00 3.77
3524 4072 1.004320 ACGCCACTTATCGCAACCA 60.004 52.632 0.00 0.00 0.00 3.67
3525 4073 1.019278 ACGCCACTTATCGCAACCAG 61.019 55.000 0.00 0.00 0.00 4.00
3526 4074 1.705337 CGCCACTTATCGCAACCAGG 61.705 60.000 0.00 0.00 0.00 4.45
3527 4075 1.376609 GCCACTTATCGCAACCAGGG 61.377 60.000 0.00 0.00 0.00 4.45
3528 4076 0.251916 CCACTTATCGCAACCAGGGA 59.748 55.000 0.00 0.00 43.93 4.20
3529 4077 1.656652 CACTTATCGCAACCAGGGAG 58.343 55.000 0.00 0.00 42.97 4.30
3530 4078 1.066143 CACTTATCGCAACCAGGGAGT 60.066 52.381 0.00 0.00 42.97 3.85
3531 4079 1.628846 ACTTATCGCAACCAGGGAGTT 59.371 47.619 0.00 0.00 42.97 3.01
3532 4080 2.039879 ACTTATCGCAACCAGGGAGTTT 59.960 45.455 0.00 0.00 42.97 2.66
3533 4081 2.871096 TATCGCAACCAGGGAGTTTT 57.129 45.000 0.00 0.00 42.97 2.43
3534 4082 1.995376 ATCGCAACCAGGGAGTTTTT 58.005 45.000 0.00 0.00 42.97 1.94
3535 4083 1.314730 TCGCAACCAGGGAGTTTTTC 58.685 50.000 0.00 0.00 34.74 2.29
3536 4084 0.313987 CGCAACCAGGGAGTTTTTCC 59.686 55.000 0.00 0.00 46.00 3.13
3537 4085 1.704641 GCAACCAGGGAGTTTTTCCT 58.295 50.000 0.00 0.00 45.98 3.36
3538 4086 2.039418 GCAACCAGGGAGTTTTTCCTT 58.961 47.619 0.00 0.00 45.98 3.36
3539 4087 2.434336 GCAACCAGGGAGTTTTTCCTTT 59.566 45.455 0.00 0.00 45.98 3.11
3540 4088 3.118408 GCAACCAGGGAGTTTTTCCTTTT 60.118 43.478 0.00 0.00 45.98 2.27
3541 4089 4.625324 GCAACCAGGGAGTTTTTCCTTTTT 60.625 41.667 0.00 0.00 45.98 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 6.086222 CCAGTTAACGATTTCCTCAACAATG 58.914 40.000 0.00 0.00 0.00 2.82
59 60 5.768164 ACCAGTTAACGATTTCCTCAACAAT 59.232 36.000 0.00 0.00 0.00 2.71
60 61 5.127491 ACCAGTTAACGATTTCCTCAACAA 58.873 37.500 0.00 0.00 0.00 2.83
61 62 4.710324 ACCAGTTAACGATTTCCTCAACA 58.290 39.130 0.00 0.00 0.00 3.33
62 63 5.163884 GCTACCAGTTAACGATTTCCTCAAC 60.164 44.000 0.00 0.00 0.00 3.18
63 64 4.933400 GCTACCAGTTAACGATTTCCTCAA 59.067 41.667 0.00 0.00 0.00 3.02
64 65 4.222145 AGCTACCAGTTAACGATTTCCTCA 59.778 41.667 0.00 0.00 0.00 3.86
65 66 4.567159 CAGCTACCAGTTAACGATTTCCTC 59.433 45.833 0.00 0.00 0.00 3.71
66 67 4.504858 CAGCTACCAGTTAACGATTTCCT 58.495 43.478 0.00 0.00 0.00 3.36
67 68 3.063588 GCAGCTACCAGTTAACGATTTCC 59.936 47.826 0.00 0.00 0.00 3.13
68 69 3.933332 AGCAGCTACCAGTTAACGATTTC 59.067 43.478 0.00 0.00 0.00 2.17
69 70 3.933332 GAGCAGCTACCAGTTAACGATTT 59.067 43.478 0.00 0.00 0.00 2.17
70 71 3.522553 GAGCAGCTACCAGTTAACGATT 58.477 45.455 0.00 0.00 0.00 3.34
71 72 2.479730 CGAGCAGCTACCAGTTAACGAT 60.480 50.000 0.00 0.00 0.00 3.73
72 73 1.135489 CGAGCAGCTACCAGTTAACGA 60.135 52.381 0.00 0.00 0.00 3.85
73 74 1.269166 CGAGCAGCTACCAGTTAACG 58.731 55.000 0.00 0.00 0.00 3.18
74 75 1.067071 ACCGAGCAGCTACCAGTTAAC 60.067 52.381 0.00 0.00 0.00 2.01
75 76 1.263356 ACCGAGCAGCTACCAGTTAA 58.737 50.000 0.00 0.00 0.00 2.01
76 77 1.067142 CAACCGAGCAGCTACCAGTTA 60.067 52.381 0.00 0.00 0.00 2.24
77 78 0.320771 CAACCGAGCAGCTACCAGTT 60.321 55.000 0.00 0.00 0.00 3.16
78 79 1.293498 CAACCGAGCAGCTACCAGT 59.707 57.895 0.00 0.00 0.00 4.00
79 80 1.448540 CCAACCGAGCAGCTACCAG 60.449 63.158 0.00 0.00 0.00 4.00
80 81 2.662596 CCAACCGAGCAGCTACCA 59.337 61.111 0.00 0.00 0.00 3.25
81 82 2.804828 AAGCCAACCGAGCAGCTACC 62.805 60.000 0.00 0.00 34.49 3.18
82 83 1.376037 AAGCCAACCGAGCAGCTAC 60.376 57.895 0.00 0.00 34.49 3.58
83 84 1.375908 CAAGCCAACCGAGCAGCTA 60.376 57.895 0.00 0.00 34.49 3.32
84 85 2.670934 CAAGCCAACCGAGCAGCT 60.671 61.111 0.00 0.00 37.10 4.24
85 86 4.410743 GCAAGCCAACCGAGCAGC 62.411 66.667 0.00 0.00 0.00 5.25
86 87 4.093952 CGCAAGCCAACCGAGCAG 62.094 66.667 0.00 0.00 0.00 4.24
87 88 4.617520 TCGCAAGCCAACCGAGCA 62.618 61.111 0.00 0.00 37.18 4.26
88 89 3.793144 CTCGCAAGCCAACCGAGC 61.793 66.667 0.00 0.00 41.41 5.03
90 91 1.080093 CTACTCGCAAGCCAACCGA 60.080 57.895 0.00 0.00 37.18 4.69
91 92 2.100631 CCTACTCGCAAGCCAACCG 61.101 63.158 0.00 0.00 37.18 4.44
92 93 2.399356 GCCTACTCGCAAGCCAACC 61.399 63.158 0.00 0.00 37.18 3.77
93 94 2.740714 CGCCTACTCGCAAGCCAAC 61.741 63.158 0.00 0.00 37.18 3.77
94 95 2.238847 ATCGCCTACTCGCAAGCCAA 62.239 55.000 0.00 0.00 37.18 4.52
95 96 2.238847 AATCGCCTACTCGCAAGCCA 62.239 55.000 0.00 0.00 37.18 4.75
96 97 0.249322 TAATCGCCTACTCGCAAGCC 60.249 55.000 0.00 0.00 37.18 4.35
97 98 1.567504 TTAATCGCCTACTCGCAAGC 58.432 50.000 0.00 0.00 37.18 4.01
98 99 3.921021 CCTATTAATCGCCTACTCGCAAG 59.079 47.826 0.00 0.00 0.00 4.01
99 100 3.859627 GCCTATTAATCGCCTACTCGCAA 60.860 47.826 0.00 0.00 0.00 4.85
100 101 2.352421 GCCTATTAATCGCCTACTCGCA 60.352 50.000 0.00 0.00 0.00 5.10
101 102 2.094649 AGCCTATTAATCGCCTACTCGC 60.095 50.000 0.00 0.00 0.00 5.03
102 103 3.851976 AGCCTATTAATCGCCTACTCG 57.148 47.619 0.00 0.00 0.00 4.18
103 104 4.167268 CGAAGCCTATTAATCGCCTACTC 58.833 47.826 0.00 0.00 0.00 2.59
104 105 3.056749 CCGAAGCCTATTAATCGCCTACT 60.057 47.826 0.00 0.00 34.13 2.57
105 106 3.251571 CCGAAGCCTATTAATCGCCTAC 58.748 50.000 0.00 0.00 34.13 3.18
106 107 2.353406 GCCGAAGCCTATTAATCGCCTA 60.353 50.000 0.00 0.00 34.13 3.93
107 108 1.608283 GCCGAAGCCTATTAATCGCCT 60.608 52.381 0.00 0.00 34.13 5.52
108 109 0.796927 GCCGAAGCCTATTAATCGCC 59.203 55.000 0.00 0.00 34.13 5.54
109 110 1.508632 TGCCGAAGCCTATTAATCGC 58.491 50.000 0.00 0.00 38.69 4.58
110 111 3.067106 ACATGCCGAAGCCTATTAATCG 58.933 45.455 0.00 0.00 38.69 3.34
111 112 6.554334 TTAACATGCCGAAGCCTATTAATC 57.446 37.500 0.00 0.00 38.69 1.75
112 113 7.370383 CAATTAACATGCCGAAGCCTATTAAT 58.630 34.615 0.00 0.00 38.69 1.40
113 114 6.238897 CCAATTAACATGCCGAAGCCTATTAA 60.239 38.462 0.00 0.00 38.69 1.40
114 115 5.240623 CCAATTAACATGCCGAAGCCTATTA 59.759 40.000 0.00 0.00 38.69 0.98
115 116 4.037923 CCAATTAACATGCCGAAGCCTATT 59.962 41.667 0.00 0.00 38.69 1.73
116 117 3.569701 CCAATTAACATGCCGAAGCCTAT 59.430 43.478 0.00 0.00 38.69 2.57
117 118 2.948979 CCAATTAACATGCCGAAGCCTA 59.051 45.455 0.00 0.00 38.69 3.93
118 119 1.750778 CCAATTAACATGCCGAAGCCT 59.249 47.619 0.00 0.00 38.69 4.58
119 120 1.802508 GCCAATTAACATGCCGAAGCC 60.803 52.381 0.00 0.00 38.69 4.35
120 121 1.559831 GCCAATTAACATGCCGAAGC 58.440 50.000 0.00 0.00 40.48 3.86
121 122 2.208326 GGCCAATTAACATGCCGAAG 57.792 50.000 0.00 0.00 33.59 3.79
125 126 6.054295 TGATTAAATGGCCAATTAACATGCC 58.946 36.000 24.86 13.53 44.27 4.40
126 127 7.551035 TTGATTAAATGGCCAATTAACATGC 57.449 32.000 24.86 15.74 0.00 4.06
135 136 9.730705 TGTTTGATTAATTGATTAAATGGCCAA 57.269 25.926 10.96 0.00 36.02 4.52
136 137 9.730705 TTGTTTGATTAATTGATTAAATGGCCA 57.269 25.926 8.56 8.56 36.02 5.36
159 160 8.612619 CGAGTAGCTGATAAACCAATAAATTGT 58.387 33.333 0.00 0.00 36.06 2.71
160 161 8.070171 CCGAGTAGCTGATAAACCAATAAATTG 58.930 37.037 0.00 0.00 37.52 2.32
161 162 7.773690 ACCGAGTAGCTGATAAACCAATAAATT 59.226 33.333 0.00 0.00 0.00 1.82
162 163 7.226720 CACCGAGTAGCTGATAAACCAATAAAT 59.773 37.037 0.00 0.00 0.00 1.40
163 164 6.537301 CACCGAGTAGCTGATAAACCAATAAA 59.463 38.462 0.00 0.00 0.00 1.40
164 165 6.046593 CACCGAGTAGCTGATAAACCAATAA 58.953 40.000 0.00 0.00 0.00 1.40
165 166 5.361571 TCACCGAGTAGCTGATAAACCAATA 59.638 40.000 0.00 0.00 0.00 1.90
166 167 4.161565 TCACCGAGTAGCTGATAAACCAAT 59.838 41.667 0.00 0.00 0.00 3.16
167 168 3.512329 TCACCGAGTAGCTGATAAACCAA 59.488 43.478 0.00 0.00 0.00 3.67
168 169 3.093814 TCACCGAGTAGCTGATAAACCA 58.906 45.455 0.00 0.00 0.00 3.67
169 170 3.445857 GTCACCGAGTAGCTGATAAACC 58.554 50.000 0.00 0.00 0.00 3.27
170 171 3.445857 GGTCACCGAGTAGCTGATAAAC 58.554 50.000 0.00 0.00 0.00 2.01
171 172 2.429610 GGGTCACCGAGTAGCTGATAAA 59.570 50.000 0.00 0.00 0.00 1.40
172 173 2.029623 GGGTCACCGAGTAGCTGATAA 58.970 52.381 0.00 0.00 0.00 1.75
173 174 1.214673 AGGGTCACCGAGTAGCTGATA 59.785 52.381 0.00 0.00 43.47 2.15
174 175 0.033011 AGGGTCACCGAGTAGCTGAT 60.033 55.000 0.00 0.00 43.47 2.90
175 176 0.622136 TAGGGTCACCGAGTAGCTGA 59.378 55.000 0.00 0.00 43.47 4.26
176 177 1.338337 CATAGGGTCACCGAGTAGCTG 59.662 57.143 0.00 0.00 43.47 4.24
177 178 1.214673 TCATAGGGTCACCGAGTAGCT 59.785 52.381 0.00 0.00 43.47 3.32
178 179 1.609555 CTCATAGGGTCACCGAGTAGC 59.390 57.143 0.00 0.00 43.47 3.58
179 180 2.933573 ACTCATAGGGTCACCGAGTAG 58.066 52.381 0.48 0.00 43.47 2.57
180 181 3.181447 CCTACTCATAGGGTCACCGAGTA 60.181 52.174 8.54 8.54 44.06 2.59
181 182 2.423088 CCTACTCATAGGGTCACCGAGT 60.423 54.545 7.23 7.23 44.06 4.18
182 183 2.231529 CCTACTCATAGGGTCACCGAG 58.768 57.143 0.00 0.00 44.06 4.63
183 184 2.359981 CCTACTCATAGGGTCACCGA 57.640 55.000 0.00 0.00 44.06 4.69
191 192 3.056035 GCCGATTAACCCCTACTCATAGG 60.056 52.174 0.00 0.00 46.99 2.57
192 193 3.576982 TGCCGATTAACCCCTACTCATAG 59.423 47.826 0.00 0.00 0.00 2.23
193 194 3.578978 TGCCGATTAACCCCTACTCATA 58.421 45.455 0.00 0.00 0.00 2.15
194 195 2.404559 TGCCGATTAACCCCTACTCAT 58.595 47.619 0.00 0.00 0.00 2.90
195 196 1.868713 TGCCGATTAACCCCTACTCA 58.131 50.000 0.00 0.00 0.00 3.41
196 197 2.104281 ACATGCCGATTAACCCCTACTC 59.896 50.000 0.00 0.00 0.00 2.59
197 198 2.104281 GACATGCCGATTAACCCCTACT 59.896 50.000 0.00 0.00 0.00 2.57
198 199 2.158871 TGACATGCCGATTAACCCCTAC 60.159 50.000 0.00 0.00 0.00 3.18
199 200 2.120312 TGACATGCCGATTAACCCCTA 58.880 47.619 0.00 0.00 0.00 3.53
200 201 0.916086 TGACATGCCGATTAACCCCT 59.084 50.000 0.00 0.00 0.00 4.79
201 202 1.404035 GTTGACATGCCGATTAACCCC 59.596 52.381 0.00 0.00 0.00 4.95
202 203 2.097466 CAGTTGACATGCCGATTAACCC 59.903 50.000 0.00 0.00 0.00 4.11
203 204 2.097466 CCAGTTGACATGCCGATTAACC 59.903 50.000 0.00 0.00 0.00 2.85
204 205 2.747446 ACCAGTTGACATGCCGATTAAC 59.253 45.455 0.00 0.00 0.00 2.01
205 206 3.066291 ACCAGTTGACATGCCGATTAA 57.934 42.857 0.00 0.00 0.00 1.40
206 207 2.779755 ACCAGTTGACATGCCGATTA 57.220 45.000 0.00 0.00 0.00 1.75
207 208 1.909700 AACCAGTTGACATGCCGATT 58.090 45.000 0.00 0.00 0.00 3.34
208 209 2.779755 TAACCAGTTGACATGCCGAT 57.220 45.000 0.00 0.00 0.00 4.18
209 210 2.552599 TTAACCAGTTGACATGCCGA 57.447 45.000 0.00 0.00 0.00 5.54
210 211 2.746904 TGATTAACCAGTTGACATGCCG 59.253 45.455 0.00 0.00 0.00 5.69
211 212 4.009675 TCTGATTAACCAGTTGACATGCC 58.990 43.478 0.00 0.00 35.71 4.40
212 213 4.436050 CGTCTGATTAACCAGTTGACATGC 60.436 45.833 0.00 0.00 35.71 4.06
213 214 4.929211 TCGTCTGATTAACCAGTTGACATG 59.071 41.667 0.00 0.00 35.71 3.21
214 215 5.147330 TCGTCTGATTAACCAGTTGACAT 57.853 39.130 0.00 0.00 35.71 3.06
215 216 4.594123 TCGTCTGATTAACCAGTTGACA 57.406 40.909 0.00 0.00 35.71 3.58
216 217 6.369065 AGAATTCGTCTGATTAACCAGTTGAC 59.631 38.462 0.00 0.00 34.29 3.18
217 218 6.464222 AGAATTCGTCTGATTAACCAGTTGA 58.536 36.000 0.00 0.00 34.29 3.18
218 219 6.727824 AGAATTCGTCTGATTAACCAGTTG 57.272 37.500 0.00 0.00 34.29 3.16
219 220 6.934645 TCAAGAATTCGTCTGATTAACCAGTT 59.065 34.615 0.00 0.00 36.40 3.16
220 221 6.464222 TCAAGAATTCGTCTGATTAACCAGT 58.536 36.000 0.00 0.00 36.40 4.00
221 222 6.968131 TCAAGAATTCGTCTGATTAACCAG 57.032 37.500 0.00 0.00 36.40 4.00
222 223 6.708502 TGTTCAAGAATTCGTCTGATTAACCA 59.291 34.615 0.00 0.00 36.40 3.67
223 224 7.129109 TGTTCAAGAATTCGTCTGATTAACC 57.871 36.000 0.00 0.00 36.40 2.85
224 225 7.237173 CCTGTTCAAGAATTCGTCTGATTAAC 58.763 38.462 0.00 1.77 36.40 2.01
225 226 6.371548 CCCTGTTCAAGAATTCGTCTGATTAA 59.628 38.462 0.00 0.00 36.40 1.40
226 227 5.874810 CCCTGTTCAAGAATTCGTCTGATTA 59.125 40.000 0.00 0.00 36.40 1.75
227 228 4.697352 CCCTGTTCAAGAATTCGTCTGATT 59.303 41.667 0.00 0.00 36.40 2.57
228 229 4.256920 CCCTGTTCAAGAATTCGTCTGAT 58.743 43.478 0.00 0.00 36.40 2.90
229 230 3.071023 ACCCTGTTCAAGAATTCGTCTGA 59.929 43.478 0.00 2.05 36.40 3.27
230 231 3.187227 CACCCTGTTCAAGAATTCGTCTG 59.813 47.826 0.00 0.00 36.40 3.51
231 232 3.403038 CACCCTGTTCAAGAATTCGTCT 58.597 45.455 0.00 0.00 38.69 4.18
232 233 2.095718 GCACCCTGTTCAAGAATTCGTC 60.096 50.000 0.00 0.00 0.00 4.20
233 234 1.880027 GCACCCTGTTCAAGAATTCGT 59.120 47.619 0.00 0.00 0.00 3.85
234 235 2.154462 AGCACCCTGTTCAAGAATTCG 58.846 47.619 0.00 0.00 0.00 3.34
235 236 3.569701 TCAAGCACCCTGTTCAAGAATTC 59.430 43.478 0.00 0.00 0.00 2.17
236 237 3.565307 TCAAGCACCCTGTTCAAGAATT 58.435 40.909 0.00 0.00 0.00 2.17
237 238 3.228188 TCAAGCACCCTGTTCAAGAAT 57.772 42.857 0.00 0.00 0.00 2.40
238 239 2.727123 TCAAGCACCCTGTTCAAGAA 57.273 45.000 0.00 0.00 0.00 2.52
239 240 2.727123 TTCAAGCACCCTGTTCAAGA 57.273 45.000 0.00 0.00 0.00 3.02
240 241 5.404946 CATTATTCAAGCACCCTGTTCAAG 58.595 41.667 0.00 0.00 0.00 3.02
241 242 4.220382 CCATTATTCAAGCACCCTGTTCAA 59.780 41.667 0.00 0.00 0.00 2.69
242 243 3.763360 CCATTATTCAAGCACCCTGTTCA 59.237 43.478 0.00 0.00 0.00 3.18
243 244 3.763897 ACCATTATTCAAGCACCCTGTTC 59.236 43.478 0.00 0.00 0.00 3.18
244 245 3.778265 ACCATTATTCAAGCACCCTGTT 58.222 40.909 0.00 0.00 0.00 3.16
245 246 3.456380 ACCATTATTCAAGCACCCTGT 57.544 42.857 0.00 0.00 0.00 4.00
246 247 4.806640 AAACCATTATTCAAGCACCCTG 57.193 40.909 0.00 0.00 0.00 4.45
247 248 4.837860 TGAAAACCATTATTCAAGCACCCT 59.162 37.500 0.00 0.00 32.89 4.34
248 249 5.146010 TGAAAACCATTATTCAAGCACCC 57.854 39.130 0.00 0.00 32.89 4.61
249 250 7.671495 ATTTGAAAACCATTATTCAAGCACC 57.329 32.000 0.00 0.00 43.95 5.01
344 347 8.181573 TGAACAAGTGTTTGAAGAATGTTAGTC 58.818 33.333 0.00 0.00 38.56 2.59
352 355 9.868277 AAATATGTTGAACAAGTGTTTGAAGAA 57.132 25.926 0.62 0.00 38.56 2.52
470 474 8.537728 AATGTTAATCAAGCATTTGGGAGATA 57.462 30.769 0.00 0.00 34.97 1.98
567 572 8.621532 TGTGAGCACTTATTAAAAGAATGAGT 57.378 30.769 1.99 0.00 0.00 3.41
623 630 7.180079 AGTATTCGATAAATGTTGAACAAGCG 58.820 34.615 0.62 0.41 0.00 4.68
817 844 1.581447 GCCACGGCCTTTTCTCTTG 59.419 57.895 0.00 0.00 34.56 3.02
872 906 1.107114 CGCCCCTATATCTCGCTGAT 58.893 55.000 0.00 0.00 39.11 2.90
1000 1071 2.202892 GGATGGGAGTTCGGTCGC 60.203 66.667 0.00 0.00 0.00 5.19
1173 1247 4.202441 AGAAAAGGACCGATGGATTCATG 58.798 43.478 0.00 0.00 32.98 3.07
1345 1419 3.897681 TACTCACCAGAGGCGGCCA 62.898 63.158 23.09 0.00 46.44 5.36
1540 1614 1.208293 TGCCATTCACGGTACATAGCA 59.792 47.619 0.00 0.00 0.00 3.49
1678 1752 2.789491 TAGCATGAGATGAGACGCAG 57.211 50.000 0.00 0.00 0.00 5.18
1776 1852 8.192774 CACCAGTTCATGAAGCAATATGTTATT 58.807 33.333 8.80 0.00 0.00 1.40
1797 1873 1.406539 AGCAAACAGAACAAGCACCAG 59.593 47.619 0.00 0.00 0.00 4.00
1854 1930 6.795098 TGTGATACAAGTGCTAAAATTCGT 57.205 33.333 0.00 0.00 0.00 3.85
1947 2023 7.566569 TCTACTCTACTCTACAAGCATAGTGT 58.433 38.462 0.00 0.00 34.26 3.55
2357 2437 2.107378 TCACCAACTTCCACCTGCAATA 59.893 45.455 0.00 0.00 0.00 1.90
2409 2489 1.441515 GCACAGTGCATCGCAGTTG 60.442 57.895 21.22 0.00 44.26 3.16
2422 2502 2.676839 CTGCAGTAATCCTCTTGCACAG 59.323 50.000 5.25 0.00 0.00 3.66
2462 2542 1.211743 GAAAGGTTCGACGGACGTTT 58.788 50.000 23.10 23.10 43.13 3.60
2551 2631 2.551721 CCAGCAGTTCAGACAATCAGGT 60.552 50.000 0.00 0.00 0.00 4.00
2580 2661 2.171003 GTAGTTCCCTGCAATGCCTTT 58.829 47.619 1.53 0.00 0.00 3.11
2611 2783 3.099905 TCGTTCTGATCAACATCCTCCT 58.900 45.455 0.00 0.00 0.00 3.69
2653 2825 5.648178 TGTAGCACTATTTACAGACGGAA 57.352 39.130 0.00 0.00 0.00 4.30
2660 2832 6.265876 TCCGGATGTATGTAGCACTATTTACA 59.734 38.462 0.00 5.61 34.57 2.41
2674 2846 1.202417 AGTTGTCGCTCCGGATGTATG 60.202 52.381 3.57 0.00 0.00 2.39
2700 2875 2.074729 AAGAGTACTCCCTCCATCCG 57.925 55.000 19.38 0.00 31.53 4.18
2806 2985 6.655078 ATGTAGGAAGTTTTTGCAGTTCAT 57.345 33.333 0.00 0.00 0.00 2.57
2889 3068 6.203808 TGAAGCTTTGGAAAGATGATGATG 57.796 37.500 0.00 0.00 38.28 3.07
3198 3377 7.775561 AGTTGCTTTATTTTACATAGAGGAGGG 59.224 37.037 0.00 0.00 0.00 4.30
3199 3378 8.738645 AGTTGCTTTATTTTACATAGAGGAGG 57.261 34.615 0.00 0.00 0.00 4.30
3200 3379 9.383519 TGAGTTGCTTTATTTTACATAGAGGAG 57.616 33.333 0.00 0.00 0.00 3.69
3201 3380 9.905713 ATGAGTTGCTTTATTTTACATAGAGGA 57.094 29.630 0.00 0.00 0.00 3.71
3220 3399 6.649973 TGCAAAATTATTTGGACCATGAGTTG 59.350 34.615 0.00 0.00 44.93 3.16
3270 3657 7.177216 TCTGCTTCAACAACCAATTTATCAGAT 59.823 33.333 0.00 0.00 0.00 2.90
3271 3658 6.489700 TCTGCTTCAACAACCAATTTATCAGA 59.510 34.615 0.00 0.00 0.00 3.27
3273 3660 6.647334 TCTGCTTCAACAACCAATTTATCA 57.353 33.333 0.00 0.00 0.00 2.15
3274 3661 7.945033 TTTCTGCTTCAACAACCAATTTATC 57.055 32.000 0.00 0.00 0.00 1.75
3275 3662 8.729805 TTTTTCTGCTTCAACAACCAATTTAT 57.270 26.923 0.00 0.00 0.00 1.40
3304 3851 0.673644 CCATCGCGTTTCCTCAACCT 60.674 55.000 5.77 0.00 30.65 3.50
3312 3859 3.508840 CTGGGCCCATCGCGTTTC 61.509 66.667 28.82 0.00 38.94 2.78
3349 3897 5.598769 AGTGTCCAAAGGTATAAGCGTATC 58.401 41.667 0.00 0.00 0.00 2.24
3353 3901 5.007385 ACTAGTGTCCAAAGGTATAAGCG 57.993 43.478 0.00 0.00 0.00 4.68
3375 3923 7.334421 CCTCTTTAAGCTGAAGTTTGCACTATA 59.666 37.037 9.25 0.00 30.68 1.31
3376 3924 6.150140 CCTCTTTAAGCTGAAGTTTGCACTAT 59.850 38.462 9.25 0.00 30.68 2.12
3377 3925 5.470098 CCTCTTTAAGCTGAAGTTTGCACTA 59.530 40.000 9.25 0.00 30.68 2.74
3378 3926 4.276926 CCTCTTTAAGCTGAAGTTTGCACT 59.723 41.667 9.25 0.00 33.11 4.40
3379 3927 4.036852 ACCTCTTTAAGCTGAAGTTTGCAC 59.963 41.667 9.25 0.00 0.00 4.57
3380 3928 4.207165 ACCTCTTTAAGCTGAAGTTTGCA 58.793 39.130 9.25 0.00 0.00 4.08
3381 3929 4.837896 ACCTCTTTAAGCTGAAGTTTGC 57.162 40.909 9.25 0.00 0.00 3.68
3382 3930 6.242508 GGTACCTCTTTAAGCTGAAGTTTG 57.757 41.667 4.06 3.65 0.00 2.93
3401 3949 0.248784 CGATCGTTCCTTCGGGGTAC 60.249 60.000 7.03 0.00 36.25 3.34
3402 3950 0.680921 ACGATCGTTCCTTCGGGGTA 60.681 55.000 16.60 0.00 39.61 3.69
3403 3951 1.538687 AACGATCGTTCCTTCGGGGT 61.539 55.000 27.11 1.46 39.61 4.95
3404 3952 0.804933 GAACGATCGTTCCTTCGGGG 60.805 60.000 38.73 2.17 46.21 5.73
3405 3953 2.662150 GAACGATCGTTCCTTCGGG 58.338 57.895 38.73 2.69 46.21 5.14
3420 3968 5.856455 CCACAATTTAGTGATTTCGTGGAAC 59.144 40.000 0.00 0.00 44.32 3.62
3421 3969 5.048364 CCCACAATTTAGTGATTTCGTGGAA 60.048 40.000 6.81 0.00 44.32 3.53
3422 3970 4.457603 CCCACAATTTAGTGATTTCGTGGA 59.542 41.667 6.81 0.00 44.32 4.02
3423 3971 4.380444 CCCCACAATTTAGTGATTTCGTGG 60.380 45.833 0.00 0.00 42.05 4.94
3424 3972 4.732784 CCCCACAATTTAGTGATTTCGTG 58.267 43.478 0.00 0.00 42.05 4.35
3425 3973 3.192633 GCCCCACAATTTAGTGATTTCGT 59.807 43.478 0.00 0.00 42.05 3.85
3426 3974 3.192422 TGCCCCACAATTTAGTGATTTCG 59.808 43.478 0.00 0.00 42.05 3.46
3427 3975 4.494484 GTGCCCCACAATTTAGTGATTTC 58.506 43.478 0.00 0.00 42.05 2.17
3428 3976 3.260632 GGTGCCCCACAATTTAGTGATTT 59.739 43.478 0.00 0.00 42.05 2.17
3429 3977 2.831526 GGTGCCCCACAATTTAGTGATT 59.168 45.455 0.00 0.00 42.05 2.57
3430 3978 2.456577 GGTGCCCCACAATTTAGTGAT 58.543 47.619 0.00 0.00 42.05 3.06
3431 3979 1.884497 CGGTGCCCCACAATTTAGTGA 60.884 52.381 0.00 0.00 42.05 3.41
3432 3980 0.525761 CGGTGCCCCACAATTTAGTG 59.474 55.000 0.00 0.00 35.86 2.74
3433 3981 0.610785 CCGGTGCCCCACAATTTAGT 60.611 55.000 0.00 0.00 35.86 2.24
3434 3982 0.610785 ACCGGTGCCCCACAATTTAG 60.611 55.000 6.12 0.00 35.86 1.85
3435 3983 0.178958 AACCGGTGCCCCACAATTTA 60.179 50.000 8.52 0.00 35.86 1.40
3436 3984 1.458588 AACCGGTGCCCCACAATTT 60.459 52.632 8.52 0.00 35.86 1.82
3437 3985 2.200092 AACCGGTGCCCCACAATT 59.800 55.556 8.52 0.00 35.86 2.32
3438 3986 2.600173 CAACCGGTGCCCCACAAT 60.600 61.111 8.52 0.00 35.86 2.71
3447 3995 1.496934 GGTGATTTTTGCAACCGGTG 58.503 50.000 8.52 3.35 0.00 4.94
3448 3996 0.391228 GGGTGATTTTTGCAACCGGT 59.609 50.000 0.00 0.00 32.69 5.28
3449 3997 3.209266 GGGTGATTTTTGCAACCGG 57.791 52.632 0.00 0.00 32.69 5.28
3451 3999 1.934849 GCGAGGGTGATTTTTGCAACC 60.935 52.381 0.00 0.00 43.57 3.77
3452 4000 1.418373 GCGAGGGTGATTTTTGCAAC 58.582 50.000 0.00 0.00 0.00 4.17
3453 4001 0.316841 GGCGAGGGTGATTTTTGCAA 59.683 50.000 0.00 0.00 0.00 4.08
3454 4002 0.539438 AGGCGAGGGTGATTTTTGCA 60.539 50.000 0.00 0.00 0.00 4.08
3455 4003 0.603065 AAGGCGAGGGTGATTTTTGC 59.397 50.000 0.00 0.00 0.00 3.68
3456 4004 2.162408 GAGAAGGCGAGGGTGATTTTTG 59.838 50.000 0.00 0.00 0.00 2.44
3457 4005 2.040412 AGAGAAGGCGAGGGTGATTTTT 59.960 45.455 0.00 0.00 0.00 1.94
3458 4006 1.630878 AGAGAAGGCGAGGGTGATTTT 59.369 47.619 0.00 0.00 0.00 1.82
3459 4007 1.208293 GAGAGAAGGCGAGGGTGATTT 59.792 52.381 0.00 0.00 0.00 2.17
3460 4008 0.827368 GAGAGAAGGCGAGGGTGATT 59.173 55.000 0.00 0.00 0.00 2.57
3461 4009 1.388065 CGAGAGAAGGCGAGGGTGAT 61.388 60.000 0.00 0.00 0.00 3.06
3462 4010 2.046864 CGAGAGAAGGCGAGGGTGA 61.047 63.158 0.00 0.00 0.00 4.02
3463 4011 2.344203 ACGAGAGAAGGCGAGGGTG 61.344 63.158 0.00 0.00 0.00 4.61
3464 4012 2.035940 ACGAGAGAAGGCGAGGGT 59.964 61.111 0.00 0.00 0.00 4.34
3465 4013 2.492090 CACGAGAGAAGGCGAGGG 59.508 66.667 0.00 0.00 0.00 4.30
3466 4014 2.344203 ACCACGAGAGAAGGCGAGG 61.344 63.158 0.00 0.00 42.67 4.63
3467 4015 1.153939 CACCACGAGAGAAGGCGAG 60.154 63.158 0.00 0.00 34.11 5.03
3468 4016 1.602605 TCACCACGAGAGAAGGCGA 60.603 57.895 0.00 0.00 34.11 5.54
3469 4017 1.444553 GTCACCACGAGAGAAGGCG 60.445 63.158 0.00 0.00 34.11 5.52
3470 4018 0.033504 TTGTCACCACGAGAGAAGGC 59.966 55.000 0.00 0.00 34.11 4.35
3471 4019 1.341531 ACTTGTCACCACGAGAGAAGG 59.658 52.381 0.00 0.00 39.80 3.46
3472 4020 2.398498 CACTTGTCACCACGAGAGAAG 58.602 52.381 0.00 0.00 40.88 2.85
3473 4021 1.068588 CCACTTGTCACCACGAGAGAA 59.931 52.381 0.00 0.00 37.46 2.87
3474 4022 0.673985 CCACTTGTCACCACGAGAGA 59.326 55.000 0.00 0.00 37.46 3.10
3475 4023 0.389391 ACCACTTGTCACCACGAGAG 59.611 55.000 0.00 0.00 37.46 3.20
3476 4024 1.338973 GTACCACTTGTCACCACGAGA 59.661 52.381 0.00 0.00 37.46 4.04
3477 4025 1.067974 TGTACCACTTGTCACCACGAG 59.932 52.381 0.00 0.00 39.72 4.18
3478 4026 1.112950 TGTACCACTTGTCACCACGA 58.887 50.000 0.00 0.00 0.00 4.35
3479 4027 1.202486 AGTGTACCACTTGTCACCACG 60.202 52.381 0.00 0.00 42.59 4.94
3480 4028 2.210116 CAGTGTACCACTTGTCACCAC 58.790 52.381 0.00 0.00 42.59 4.16
3481 4029 1.474320 GCAGTGTACCACTTGTCACCA 60.474 52.381 0.00 0.00 42.59 4.17
3482 4030 1.226746 GCAGTGTACCACTTGTCACC 58.773 55.000 0.00 0.00 42.59 4.02
3483 4031 1.948104 TGCAGTGTACCACTTGTCAC 58.052 50.000 0.00 0.00 42.59 3.67
3484 4032 2.493035 CATGCAGTGTACCACTTGTCA 58.507 47.619 0.00 0.00 42.59 3.58
3485 4033 1.197721 GCATGCAGTGTACCACTTGTC 59.802 52.381 14.21 0.00 42.59 3.18
3486 4034 1.238439 GCATGCAGTGTACCACTTGT 58.762 50.000 14.21 0.00 42.59 3.16
3487 4035 1.069022 GTGCATGCAGTGTACCACTTG 60.069 52.381 23.41 0.00 42.59 3.16
3488 4036 1.238439 GTGCATGCAGTGTACCACTT 58.762 50.000 23.41 0.00 42.59 3.16
3489 4037 0.950555 CGTGCATGCAGTGTACCACT 60.951 55.000 23.41 0.00 46.51 4.00
3490 4038 1.497278 CGTGCATGCAGTGTACCAC 59.503 57.895 23.41 5.54 39.94 4.16
3491 4039 2.324330 GCGTGCATGCAGTGTACCA 61.324 57.895 25.86 0.00 39.94 3.25
3492 4040 2.480555 GCGTGCATGCAGTGTACC 59.519 61.111 25.86 7.18 39.94 3.34
3493 4041 2.324330 TGGCGTGCATGCAGTGTAC 61.324 57.895 30.79 13.76 39.72 2.90
3494 4042 2.031768 TGGCGTGCATGCAGTGTA 59.968 55.556 30.79 5.53 36.28 2.90
3495 4043 3.663176 GTGGCGTGCATGCAGTGT 61.663 61.111 30.79 0.00 36.28 3.55
3496 4044 1.576451 TAAGTGGCGTGCATGCAGTG 61.576 55.000 30.79 17.93 36.28 3.66
3497 4045 0.677731 ATAAGTGGCGTGCATGCAGT 60.678 50.000 30.79 17.04 36.28 4.40
3498 4046 0.028505 GATAAGTGGCGTGCATGCAG 59.971 55.000 30.79 16.13 36.28 4.41
3499 4047 1.704387 CGATAAGTGGCGTGCATGCA 61.704 55.000 30.79 18.46 36.28 3.96
3500 4048 1.010797 CGATAAGTGGCGTGCATGC 60.011 57.895 22.99 22.99 0.00 4.06
3501 4049 1.010797 GCGATAAGTGGCGTGCATG 60.011 57.895 0.09 0.09 0.00 4.06
3502 4050 1.024046 TTGCGATAAGTGGCGTGCAT 61.024 50.000 0.00 0.00 31.70 3.96
3503 4051 1.669437 TTGCGATAAGTGGCGTGCA 60.669 52.632 0.00 0.00 0.00 4.57
3504 4052 1.226018 GTTGCGATAAGTGGCGTGC 60.226 57.895 0.00 0.00 0.00 5.34
3505 4053 1.295357 TGGTTGCGATAAGTGGCGTG 61.295 55.000 0.00 0.00 0.00 5.34
3506 4054 1.004320 TGGTTGCGATAAGTGGCGT 60.004 52.632 0.00 0.00 0.00 5.68
3507 4055 1.705337 CCTGGTTGCGATAAGTGGCG 61.705 60.000 0.00 0.00 0.00 5.69
3508 4056 1.376609 CCCTGGTTGCGATAAGTGGC 61.377 60.000 0.00 0.00 0.00 5.01
3509 4057 0.251916 TCCCTGGTTGCGATAAGTGG 59.748 55.000 0.00 0.00 0.00 4.00
3510 4058 1.066143 ACTCCCTGGTTGCGATAAGTG 60.066 52.381 0.00 0.00 0.00 3.16
3511 4059 1.276622 ACTCCCTGGTTGCGATAAGT 58.723 50.000 0.00 0.00 0.00 2.24
3512 4060 2.403252 AACTCCCTGGTTGCGATAAG 57.597 50.000 0.00 0.00 0.00 1.73
3513 4061 2.871096 AAACTCCCTGGTTGCGATAA 57.129 45.000 0.00 0.00 0.00 1.75
3514 4062 2.871096 AAAACTCCCTGGTTGCGATA 57.129 45.000 0.00 0.00 0.00 2.92
3515 4063 1.886542 GAAAAACTCCCTGGTTGCGAT 59.113 47.619 0.00 0.00 0.00 4.58
3516 4064 1.314730 GAAAAACTCCCTGGTTGCGA 58.685 50.000 0.00 0.00 0.00 5.10
3517 4065 0.313987 GGAAAAACTCCCTGGTTGCG 59.686 55.000 0.00 0.00 38.44 4.85
3518 4066 1.704641 AGGAAAAACTCCCTGGTTGC 58.295 50.000 0.00 0.00 46.81 4.17
3519 4067 4.753516 AAAAGGAAAAACTCCCTGGTTG 57.246 40.909 0.00 0.00 46.81 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.