Multiple sequence alignment - TraesCS4B01G057800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G057800 chr4B 100.000 2306 0 0 1 2306 47853149 47855454 0.000000e+00 4259.0
1 TraesCS4B01G057800 chr2D 88.525 976 105 6 1338 2306 38795211 38794236 0.000000e+00 1175.0
2 TraesCS4B01G057800 chr2D 88.110 984 110 6 1330 2306 168241194 168242177 0.000000e+00 1162.0
3 TraesCS4B01G057800 chr2D 86.857 913 108 7 33 940 586115297 586116202 0.000000e+00 1011.0
4 TraesCS4B01G057800 chr7B 88.422 976 106 6 1338 2306 657539823 657540798 0.000000e+00 1170.0
5 TraesCS4B01G057800 chr7B 100.000 31 0 0 2 32 456445236 456445206 8.900000e-05 58.4
6 TraesCS4B01G057800 chr5D 88.422 976 106 6 1338 2306 484642450 484641475 0.000000e+00 1170.0
7 TraesCS4B01G057800 chr5D 87.076 913 106 7 33 940 480484769 480485674 0.000000e+00 1022.0
8 TraesCS4B01G057800 chr5D 86.966 913 107 7 33 940 478531992 478531087 0.000000e+00 1016.0
9 TraesCS4B01G057800 chr5D 86.747 913 109 7 33 940 467443109 467444014 0.000000e+00 1005.0
10 TraesCS4B01G057800 chr5B 88.320 976 107 6 1338 2306 501423326 501422351 0.000000e+00 1164.0
11 TraesCS4B01G057800 chr5B 88.037 978 106 9 1338 2306 589353212 589354187 0.000000e+00 1147.0
12 TraesCS4B01G057800 chr5B 96.594 323 9 2 1009 1330 666130774 666130453 3.370000e-148 534.0
13 TraesCS4B01G057800 chr2B 88.320 976 107 7 1338 2306 766187144 766188119 0.000000e+00 1164.0
14 TraesCS4B01G057800 chr2B 96.933 326 9 1 1009 1333 664409140 664408815 1.560000e-151 545.0
15 TraesCS4B01G057800 chr2B 100.000 32 0 0 1 32 377549389 377549358 2.470000e-05 60.2
16 TraesCS4B01G057800 chr1D 88.115 976 109 6 1338 2306 73040617 73039642 0.000000e+00 1153.0
17 TraesCS4B01G057800 chr1D 86.732 912 109 8 33 939 412872456 412873360 0.000000e+00 1003.0
18 TraesCS4B01G057800 chr1D 86.667 915 108 8 33 940 421878202 421877295 0.000000e+00 1002.0
19 TraesCS4B01G057800 chr1D 96.933 326 10 0 1006 1331 494487239 494487564 4.330000e-152 547.0
20 TraesCS4B01G057800 chr7A 88.000 975 110 6 1338 2306 197147386 197148359 0.000000e+00 1146.0
21 TraesCS4B01G057800 chr7A 96.308 325 10 2 1009 1333 50183241 50182919 1.210000e-147 532.0
22 TraesCS4B01G057800 chr3D 86.966 913 107 7 33 940 48967276 48968181 0.000000e+00 1016.0
23 TraesCS4B01G057800 chr3D 87.342 79 10 0 931 1009 463401014 463401092 8.770000e-15 91.6
24 TraesCS4B01G057800 chr7D 86.857 913 107 8 33 940 416019655 416018751 0.000000e+00 1009.0
25 TraesCS4B01G057800 chr6D 86.747 913 109 7 33 940 424735638 424736543 0.000000e+00 1005.0
26 TraesCS4B01G057800 chr6D 100.000 34 0 0 1 34 151512481 151512448 1.910000e-06 63.9
27 TraesCS4B01G057800 chr6D 96.875 32 1 0 1 32 264763559 264763590 1.000000e-03 54.7
28 TraesCS4B01G057800 chr3B 97.840 324 7 0 1009 1332 541061940 541061617 5.560000e-156 560.0
29 TraesCS4B01G057800 chr3B 100.000 32 0 0 1 32 279025857 279025888 2.470000e-05 60.2
30 TraesCS4B01G057800 chr6B 97.222 324 7 1 1009 1332 28113106 28112785 4.330000e-152 547.0
31 TraesCS4B01G057800 chr6B 97.059 34 1 0 1 34 275934907 275934874 8.900000e-05 58.4
32 TraesCS4B01G057800 chr1A 96.296 324 11 1 1009 1332 277625919 277625597 4.360000e-147 531.0
33 TraesCS4B01G057800 chr5A 95.468 331 14 1 1010 1340 634632832 634632503 5.640000e-146 527.0
34 TraesCS4B01G057800 chr5A 91.429 70 6 0 940 1009 651592548 651592617 1.890000e-16 97.1
35 TraesCS4B01G057800 chr4D 96.000 325 12 1 1006 1330 126639048 126639371 5.640000e-146 527.0
36 TraesCS4B01G057800 chr1B 91.429 70 6 0 940 1009 678082886 678082955 1.890000e-16 97.1
37 TraesCS4B01G057800 chr6A 100.000 34 0 0 1 34 192826514 192826547 1.910000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G057800 chr4B 47853149 47855454 2305 False 4259 4259 100.000 1 2306 1 chr4B.!!$F1 2305
1 TraesCS4B01G057800 chr2D 38794236 38795211 975 True 1175 1175 88.525 1338 2306 1 chr2D.!!$R1 968
2 TraesCS4B01G057800 chr2D 168241194 168242177 983 False 1162 1162 88.110 1330 2306 1 chr2D.!!$F1 976
3 TraesCS4B01G057800 chr2D 586115297 586116202 905 False 1011 1011 86.857 33 940 1 chr2D.!!$F2 907
4 TraesCS4B01G057800 chr7B 657539823 657540798 975 False 1170 1170 88.422 1338 2306 1 chr7B.!!$F1 968
5 TraesCS4B01G057800 chr5D 484641475 484642450 975 True 1170 1170 88.422 1338 2306 1 chr5D.!!$R2 968
6 TraesCS4B01G057800 chr5D 480484769 480485674 905 False 1022 1022 87.076 33 940 1 chr5D.!!$F2 907
7 TraesCS4B01G057800 chr5D 478531087 478531992 905 True 1016 1016 86.966 33 940 1 chr5D.!!$R1 907
8 TraesCS4B01G057800 chr5D 467443109 467444014 905 False 1005 1005 86.747 33 940 1 chr5D.!!$F1 907
9 TraesCS4B01G057800 chr5B 501422351 501423326 975 True 1164 1164 88.320 1338 2306 1 chr5B.!!$R1 968
10 TraesCS4B01G057800 chr5B 589353212 589354187 975 False 1147 1147 88.037 1338 2306 1 chr5B.!!$F1 968
11 TraesCS4B01G057800 chr2B 766187144 766188119 975 False 1164 1164 88.320 1338 2306 1 chr2B.!!$F1 968
12 TraesCS4B01G057800 chr1D 73039642 73040617 975 True 1153 1153 88.115 1338 2306 1 chr1D.!!$R1 968
13 TraesCS4B01G057800 chr1D 412872456 412873360 904 False 1003 1003 86.732 33 939 1 chr1D.!!$F1 906
14 TraesCS4B01G057800 chr1D 421877295 421878202 907 True 1002 1002 86.667 33 940 1 chr1D.!!$R2 907
15 TraesCS4B01G057800 chr7A 197147386 197148359 973 False 1146 1146 88.000 1338 2306 1 chr7A.!!$F1 968
16 TraesCS4B01G057800 chr3D 48967276 48968181 905 False 1016 1016 86.966 33 940 1 chr3D.!!$F1 907
17 TraesCS4B01G057800 chr7D 416018751 416019655 904 True 1009 1009 86.857 33 940 1 chr7D.!!$R1 907
18 TraesCS4B01G057800 chr6D 424735638 424736543 905 False 1005 1005 86.747 33 940 1 chr6D.!!$F2 907

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
918 926 0.907704 TCCTTCGCCCACACCATAGT 60.908 55.0 0.0 0.0 0.0 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1872 1883 0.602562 TGCAAAGCATAGTGTTGGCC 59.397 50.0 0.0 0.0 31.71 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.222124 CTGTAGCTCAAAATACAGGGGT 57.778 45.455 4.43 0.00 43.32 4.95
26 27 3.941483 CTGTAGCTCAAAATACAGGGGTG 59.059 47.826 4.43 0.00 43.32 4.61
27 28 3.329520 TGTAGCTCAAAATACAGGGGTGT 59.670 43.478 0.00 0.00 0.00 4.16
28 29 3.525800 AGCTCAAAATACAGGGGTGTT 57.474 42.857 0.00 0.00 0.00 3.32
29 30 4.650972 AGCTCAAAATACAGGGGTGTTA 57.349 40.909 0.00 0.00 0.00 2.41
30 31 4.332828 AGCTCAAAATACAGGGGTGTTAC 58.667 43.478 0.00 0.00 0.00 2.50
31 32 4.076394 GCTCAAAATACAGGGGTGTTACA 58.924 43.478 0.00 0.00 0.00 2.41
46 47 5.851047 GTGTTACACCAACGCTATTACTT 57.149 39.130 3.79 0.00 43.09 2.24
47 48 6.232139 GTGTTACACCAACGCTATTACTTT 57.768 37.500 3.79 0.00 43.09 2.66
58 59 7.412672 CCAACGCTATTACTTTGGAGTTTCTAC 60.413 40.741 0.00 0.00 40.47 2.59
60 61 7.156673 ACGCTATTACTTTGGAGTTTCTACAA 58.843 34.615 0.00 0.00 37.33 2.41
62 63 8.116753 CGCTATTACTTTGGAGTTTCTACAATG 58.883 37.037 6.20 6.20 33.96 2.82
68 69 7.707104 ACTTTGGAGTTTCTACAATGTTTGAG 58.293 34.615 7.22 0.00 38.85 3.02
69 70 6.633500 TTGGAGTTTCTACAATGTTTGAGG 57.367 37.500 0.00 0.00 28.11 3.86
103 104 8.268850 TCCTTTTCTTATGTGCTTTGTAGATC 57.731 34.615 0.00 0.00 0.00 2.75
104 105 7.064609 TCCTTTTCTTATGTGCTTTGTAGATCG 59.935 37.037 0.00 0.00 0.00 3.69
122 123 1.262950 TCGCATGTTGTCCTTTGAACG 59.737 47.619 0.00 0.00 0.00 3.95
123 124 1.002900 CGCATGTTGTCCTTTGAACGT 60.003 47.619 0.00 0.00 0.00 3.99
140 141 2.446435 ACGTTTAGCCTTGGCAATCAT 58.554 42.857 14.54 0.00 0.00 2.45
195 196 1.985159 ACTGGCTTATCAACCACTGGA 59.015 47.619 0.71 0.00 0.00 3.86
215 216 3.440173 GGAAAATCCATTCGAAGCACTCA 59.560 43.478 3.35 0.00 36.28 3.41
226 227 4.326826 TCGAAGCACTCAAATCCATTCTT 58.673 39.130 0.00 0.00 0.00 2.52
253 254 4.864916 ACGCATGATGTGTCTAATGTTC 57.135 40.909 5.69 0.00 36.11 3.18
262 263 8.122472 TGATGTGTCTAATGTTCTGAGTTCTA 57.878 34.615 0.00 0.00 0.00 2.10
279 282 6.483974 TGAGTTCTACTTCCATAGTCGATCTC 59.516 42.308 0.00 0.00 41.37 2.75
288 291 6.879276 TCCATAGTCGATCTCGTTAAGATT 57.121 37.500 0.00 0.00 45.06 2.40
293 296 9.880064 CATAGTCGATCTCGTTAAGATTTTCTA 57.120 33.333 0.00 0.00 45.06 2.10
301 304 8.547967 TCTCGTTAAGATTTTCTACTTGCAAT 57.452 30.769 0.00 0.00 0.00 3.56
304 307 9.210329 TCGTTAAGATTTTCTACTTGCAATACA 57.790 29.630 0.00 0.00 0.00 2.29
317 320 7.145932 ACTTGCAATACATCTAGGAAACAAC 57.854 36.000 0.00 0.00 0.00 3.32
318 321 6.714810 ACTTGCAATACATCTAGGAAACAACA 59.285 34.615 0.00 0.00 0.00 3.33
319 322 7.230510 ACTTGCAATACATCTAGGAAACAACAA 59.769 33.333 0.00 0.00 0.00 2.83
336 339 1.282447 ACAACACCACCACCAAGTGTA 59.718 47.619 0.00 0.00 43.69 2.90
339 342 2.371306 ACACCACCACCAAGTGTAAAC 58.629 47.619 0.00 0.00 42.71 2.01
371 374 3.708403 TGTGGCTTTCATCTCATCAGT 57.292 42.857 0.00 0.00 0.00 3.41
413 417 3.949754 TCACTATACCCTCAAGTACCGTG 59.050 47.826 0.00 0.00 31.77 4.94
415 419 2.537633 ATACCCTCAAGTACCGTGGA 57.462 50.000 0.00 0.00 0.00 4.02
464 468 6.877322 AGTTCATAGTACCTTGCAAATAACGT 59.123 34.615 0.00 0.00 0.00 3.99
467 471 8.360325 TCATAGTACCTTGCAAATAACGTATG 57.640 34.615 0.00 4.59 0.00 2.39
479 483 1.992170 AACGTATGACTCGCTCAACC 58.008 50.000 0.00 0.00 30.60 3.77
486 490 3.120385 CTCGCTCAACCGCATGCA 61.120 61.111 19.57 0.00 0.00 3.96
501 505 4.462394 GCAAGTGCACACCTCTCA 57.538 55.556 21.04 0.00 41.59 3.27
531 536 4.911514 AAAACCGACTTAGTTTGCACAT 57.088 36.364 0.00 0.00 37.50 3.21
552 557 3.301794 AGCAAATGATATGTCAGGCCA 57.698 42.857 5.01 0.00 37.87 5.36
558 563 5.636903 AATGATATGTCAGGCCAAGTAGT 57.363 39.130 5.01 0.00 37.87 2.73
585 590 4.471386 AGCTAGGTACATGAGTGAACCAAT 59.529 41.667 0.00 0.00 34.29 3.16
623 628 2.483583 CTGATCTACAGTCGTGCCTC 57.516 55.000 0.00 0.00 41.30 4.70
633 638 1.002087 AGTCGTGCCTCCGAATTTTCT 59.998 47.619 0.00 0.00 38.80 2.52
638 643 3.871594 CGTGCCTCCGAATTTTCTAATCT 59.128 43.478 0.00 0.00 0.00 2.40
640 645 4.636206 GTGCCTCCGAATTTTCTAATCTGT 59.364 41.667 0.00 0.00 0.00 3.41
660 667 5.838521 TCTGTGCTAGGATCATATGGTGTTA 59.161 40.000 2.13 0.00 0.00 2.41
672 679 9.561069 GATCATATGGTGTTATAGAAGGTTTGT 57.439 33.333 2.13 0.00 0.00 2.83
698 705 3.486875 CCGAATATCCAAAACGGCTCAAC 60.487 47.826 0.00 0.00 37.32 3.18
699 706 3.374058 CGAATATCCAAAACGGCTCAACT 59.626 43.478 0.00 0.00 33.14 3.16
713 720 4.872691 CGGCTCAACTTCTTCTCAACATAT 59.127 41.667 0.00 0.00 0.00 1.78
714 721 6.042777 CGGCTCAACTTCTTCTCAACATATA 58.957 40.000 0.00 0.00 0.00 0.86
746 753 4.220602 GCAAAAGTGTAATTCCACCCTCAT 59.779 41.667 0.00 0.00 35.93 2.90
750 757 7.881775 AAAGTGTAATTCCACCCTCATTATC 57.118 36.000 0.00 0.00 35.93 1.75
795 802 1.072266 AAATCAGCCACACCCAGGTA 58.928 50.000 0.00 0.00 0.00 3.08
799 806 1.004277 TCAGCCACACCCAGGTATTTC 59.996 52.381 0.00 0.00 0.00 2.17
800 807 1.072266 AGCCACACCCAGGTATTTCA 58.928 50.000 0.00 0.00 0.00 2.69
836 843 5.505181 TGAGATAGAAAAGCCTTGACCTT 57.495 39.130 0.00 0.00 0.00 3.50
874 881 7.888514 AGGTGGGTCCTAAATATCAATATGA 57.111 36.000 0.00 0.00 46.10 2.15
877 885 9.533831 GGTGGGTCCTAAATATCAATATGAATT 57.466 33.333 0.00 0.00 0.00 2.17
909 917 3.199071 ACACAATATAAGTCCTTCGCCCA 59.801 43.478 0.00 0.00 0.00 5.36
918 926 0.907704 TCCTTCGCCCACACCATAGT 60.908 55.000 0.00 0.00 0.00 2.12
942 950 9.371136 AGTGATAGTATACACATTTGTCAGTTG 57.629 33.333 5.50 0.00 39.18 3.16
943 951 8.604035 GTGATAGTATACACATTTGTCAGTTGG 58.396 37.037 5.50 0.00 37.15 3.77
944 952 8.536175 TGATAGTATACACATTTGTCAGTTGGA 58.464 33.333 5.50 0.00 37.15 3.53
945 953 9.547753 GATAGTATACACATTTGTCAGTTGGAT 57.452 33.333 5.50 0.00 37.15 3.41
946 954 7.615582 AGTATACACATTTGTCAGTTGGATG 57.384 36.000 5.50 0.00 37.15 3.51
947 955 7.168219 AGTATACACATTTGTCAGTTGGATGT 58.832 34.615 5.50 0.00 37.15 3.06
948 956 8.318412 AGTATACACATTTGTCAGTTGGATGTA 58.682 33.333 5.50 0.00 37.15 2.29
949 957 7.994425 ATACACATTTGTCAGTTGGATGTAA 57.006 32.000 0.00 0.00 37.15 2.41
950 958 6.707440 ACACATTTGTCAGTTGGATGTAAA 57.293 33.333 0.00 0.00 30.39 2.01
951 959 7.288810 ACACATTTGTCAGTTGGATGTAAAT 57.711 32.000 0.00 0.00 30.39 1.40
952 960 7.725251 ACACATTTGTCAGTTGGATGTAAATT 58.275 30.769 0.00 0.00 30.39 1.82
953 961 8.203485 ACACATTTGTCAGTTGGATGTAAATTT 58.797 29.630 0.00 0.00 30.39 1.82
954 962 8.702438 CACATTTGTCAGTTGGATGTAAATTTC 58.298 33.333 0.00 0.00 30.39 2.17
955 963 7.872483 ACATTTGTCAGTTGGATGTAAATTTCC 59.128 33.333 0.00 0.00 0.00 3.13
956 964 7.595819 TTTGTCAGTTGGATGTAAATTTCCT 57.404 32.000 0.00 0.00 0.00 3.36
957 965 6.817765 TGTCAGTTGGATGTAAATTTCCTC 57.182 37.500 0.00 0.00 0.00 3.71
958 966 5.411361 TGTCAGTTGGATGTAAATTTCCTCG 59.589 40.000 0.00 0.00 0.00 4.63
959 967 5.411669 GTCAGTTGGATGTAAATTTCCTCGT 59.588 40.000 0.00 0.00 0.00 4.18
960 968 5.642063 TCAGTTGGATGTAAATTTCCTCGTC 59.358 40.000 0.00 0.00 0.00 4.20
961 969 5.643777 CAGTTGGATGTAAATTTCCTCGTCT 59.356 40.000 0.00 0.00 0.00 4.18
962 970 6.816640 CAGTTGGATGTAAATTTCCTCGTCTA 59.183 38.462 0.00 0.00 0.00 2.59
963 971 7.010552 CAGTTGGATGTAAATTTCCTCGTCTAG 59.989 40.741 0.00 0.00 0.00 2.43
964 972 5.357257 TGGATGTAAATTTCCTCGTCTAGC 58.643 41.667 0.00 0.00 0.00 3.42
965 973 5.128827 TGGATGTAAATTTCCTCGTCTAGCT 59.871 40.000 0.00 0.00 0.00 3.32
966 974 5.692654 GGATGTAAATTTCCTCGTCTAGCTC 59.307 44.000 0.00 0.00 0.00 4.09
967 975 5.916661 TGTAAATTTCCTCGTCTAGCTCT 57.083 39.130 0.00 0.00 0.00 4.09
968 976 5.892568 TGTAAATTTCCTCGTCTAGCTCTC 58.107 41.667 0.00 0.00 0.00 3.20
969 977 5.652891 TGTAAATTTCCTCGTCTAGCTCTCT 59.347 40.000 0.00 0.00 0.00 3.10
970 978 6.827251 TGTAAATTTCCTCGTCTAGCTCTCTA 59.173 38.462 0.00 0.00 0.00 2.43
971 979 6.969993 AAATTTCCTCGTCTAGCTCTCTAT 57.030 37.500 0.00 0.00 0.00 1.98
972 980 6.969993 AATTTCCTCGTCTAGCTCTCTATT 57.030 37.500 0.00 0.00 0.00 1.73
973 981 8.466617 AAATTTCCTCGTCTAGCTCTCTATTA 57.533 34.615 0.00 0.00 0.00 0.98
974 982 8.466617 AATTTCCTCGTCTAGCTCTCTATTAA 57.533 34.615 0.00 0.00 0.00 1.40
975 983 7.499321 TTTCCTCGTCTAGCTCTCTATTAAG 57.501 40.000 0.00 0.00 0.00 1.85
976 984 6.422344 TCCTCGTCTAGCTCTCTATTAAGA 57.578 41.667 0.00 0.00 0.00 2.10
977 985 6.828788 TCCTCGTCTAGCTCTCTATTAAGAA 58.171 40.000 0.00 0.00 0.00 2.52
978 986 7.281098 TCCTCGTCTAGCTCTCTATTAAGAAA 58.719 38.462 0.00 0.00 0.00 2.52
979 987 7.774157 TCCTCGTCTAGCTCTCTATTAAGAAAA 59.226 37.037 0.00 0.00 0.00 2.29
980 988 8.073768 CCTCGTCTAGCTCTCTATTAAGAAAAG 58.926 40.741 0.00 0.00 0.00 2.27
981 989 8.508883 TCGTCTAGCTCTCTATTAAGAAAAGT 57.491 34.615 0.00 0.00 0.00 2.66
982 990 8.614346 TCGTCTAGCTCTCTATTAAGAAAAGTC 58.386 37.037 0.00 0.00 0.00 3.01
983 991 7.584847 CGTCTAGCTCTCTATTAAGAAAAGTCG 59.415 40.741 0.00 0.00 0.00 4.18
984 992 8.400186 GTCTAGCTCTCTATTAAGAAAAGTCGT 58.600 37.037 0.00 0.00 0.00 4.34
985 993 8.614346 TCTAGCTCTCTATTAAGAAAAGTCGTC 58.386 37.037 0.00 0.00 0.00 4.20
986 994 7.159322 AGCTCTCTATTAAGAAAAGTCGTCA 57.841 36.000 0.00 0.00 0.00 4.35
987 995 7.777095 AGCTCTCTATTAAGAAAAGTCGTCAT 58.223 34.615 0.00 0.00 0.00 3.06
988 996 8.904834 AGCTCTCTATTAAGAAAAGTCGTCATA 58.095 33.333 0.00 0.00 0.00 2.15
989 997 9.517609 GCTCTCTATTAAGAAAAGTCGTCATAA 57.482 33.333 0.00 0.00 0.00 1.90
1003 1011 3.964909 CGTCATAACGTCCATCTGATGA 58.035 45.455 18.92 2.75 43.94 2.92
1004 1012 4.359706 CGTCATAACGTCCATCTGATGAA 58.640 43.478 18.92 0.00 43.94 2.57
1005 1013 4.803613 CGTCATAACGTCCATCTGATGAAA 59.196 41.667 18.92 4.07 43.94 2.69
1006 1014 5.051441 CGTCATAACGTCCATCTGATGAAAG 60.051 44.000 18.92 3.60 43.94 2.62
1007 1015 6.042777 GTCATAACGTCCATCTGATGAAAGA 58.957 40.000 18.92 5.20 33.92 2.52
1008 1016 6.199908 GTCATAACGTCCATCTGATGAAAGAG 59.800 42.308 18.92 7.84 33.92 2.85
1009 1017 2.898705 ACGTCCATCTGATGAAAGAGC 58.101 47.619 18.92 3.11 33.92 4.09
1010 1018 2.234661 ACGTCCATCTGATGAAAGAGCA 59.765 45.455 18.92 0.00 33.92 4.26
1011 1019 3.264947 CGTCCATCTGATGAAAGAGCAA 58.735 45.455 18.92 0.00 31.07 3.91
1012 1020 3.686241 CGTCCATCTGATGAAAGAGCAAA 59.314 43.478 18.92 0.00 31.07 3.68
1013 1021 4.201792 CGTCCATCTGATGAAAGAGCAAAG 60.202 45.833 18.92 0.00 31.07 2.77
1014 1022 4.096081 GTCCATCTGATGAAAGAGCAAAGG 59.904 45.833 18.92 0.00 0.00 3.11
1015 1023 3.380637 CCATCTGATGAAAGAGCAAAGGG 59.619 47.826 18.92 0.00 0.00 3.95
1016 1024 2.440409 TCTGATGAAAGAGCAAAGGGC 58.560 47.619 0.00 0.00 45.30 5.19
1032 1040 2.124736 GCAGGGTGCAATCGCCTA 60.125 61.111 0.00 0.00 44.26 3.93
1033 1041 1.748879 GCAGGGTGCAATCGCCTAA 60.749 57.895 0.00 0.00 44.26 2.69
1034 1042 1.103398 GCAGGGTGCAATCGCCTAAT 61.103 55.000 0.00 0.00 44.26 1.73
1035 1043 0.947244 CAGGGTGCAATCGCCTAATC 59.053 55.000 0.00 0.00 42.48 1.75
1036 1044 0.546122 AGGGTGCAATCGCCTAATCA 59.454 50.000 0.00 0.00 42.48 2.57
1037 1045 1.143684 AGGGTGCAATCGCCTAATCAT 59.856 47.619 0.00 0.00 42.48 2.45
1038 1046 1.537202 GGGTGCAATCGCCTAATCATC 59.463 52.381 0.00 0.00 42.48 2.92
1039 1047 2.221169 GGTGCAATCGCCTAATCATCA 58.779 47.619 0.00 0.00 39.75 3.07
1040 1048 2.618241 GGTGCAATCGCCTAATCATCAA 59.382 45.455 0.00 0.00 39.75 2.57
1041 1049 3.548818 GGTGCAATCGCCTAATCATCAAC 60.549 47.826 0.00 0.00 39.75 3.18
1042 1050 3.313526 GTGCAATCGCCTAATCATCAACT 59.686 43.478 0.00 0.00 37.32 3.16
1043 1051 3.561310 TGCAATCGCCTAATCATCAACTC 59.439 43.478 0.00 0.00 37.32 3.01
1044 1052 3.561310 GCAATCGCCTAATCATCAACTCA 59.439 43.478 0.00 0.00 0.00 3.41
1045 1053 4.319333 GCAATCGCCTAATCATCAACTCAG 60.319 45.833 0.00 0.00 0.00 3.35
1046 1054 4.944619 ATCGCCTAATCATCAACTCAGA 57.055 40.909 0.00 0.00 0.00 3.27
1047 1055 4.944619 TCGCCTAATCATCAACTCAGAT 57.055 40.909 0.00 0.00 0.00 2.90
1048 1056 6.596309 ATCGCCTAATCATCAACTCAGATA 57.404 37.500 0.00 0.00 0.00 1.98
1049 1057 6.405278 TCGCCTAATCATCAACTCAGATAA 57.595 37.500 0.00 0.00 0.00 1.75
1050 1058 6.997655 TCGCCTAATCATCAACTCAGATAAT 58.002 36.000 0.00 0.00 0.00 1.28
1051 1059 7.093354 TCGCCTAATCATCAACTCAGATAATC 58.907 38.462 0.00 0.00 0.00 1.75
1052 1060 7.039434 TCGCCTAATCATCAACTCAGATAATCT 60.039 37.037 0.00 0.00 0.00 2.40
1053 1061 8.246871 CGCCTAATCATCAACTCAGATAATCTA 58.753 37.037 0.00 0.00 0.00 1.98
1054 1062 9.585099 GCCTAATCATCAACTCAGATAATCTAG 57.415 37.037 0.00 0.00 0.00 2.43
1058 1066 8.954834 ATCATCAACTCAGATAATCTAGAGGT 57.045 34.615 0.00 0.00 30.89 3.85
1059 1067 8.175925 TCATCAACTCAGATAATCTAGAGGTG 57.824 38.462 11.30 11.30 39.00 4.00
1060 1068 8.001292 TCATCAACTCAGATAATCTAGAGGTGA 58.999 37.037 18.49 18.49 44.38 4.02
1061 1069 8.805175 CATCAACTCAGATAATCTAGAGGTGAT 58.195 37.037 20.41 20.41 46.92 3.06
1062 1070 8.774546 TCAACTCAGATAATCTAGAGGTGATT 57.225 34.615 14.54 0.00 40.25 2.57
1063 1071 8.637099 TCAACTCAGATAATCTAGAGGTGATTG 58.363 37.037 14.54 7.03 40.25 2.67
1064 1072 8.637099 CAACTCAGATAATCTAGAGGTGATTGA 58.363 37.037 11.87 0.00 39.49 2.57
1065 1073 8.408043 ACTCAGATAATCTAGAGGTGATTGAG 57.592 38.462 15.61 15.61 35.90 3.02
1066 1074 8.224025 ACTCAGATAATCTAGAGGTGATTGAGA 58.776 37.037 20.53 3.85 35.90 3.27
1067 1075 8.402798 TCAGATAATCTAGAGGTGATTGAGAC 57.597 38.462 0.00 0.00 35.90 3.36
1068 1076 7.450014 TCAGATAATCTAGAGGTGATTGAGACC 59.550 40.741 0.00 0.00 35.90 3.85
1069 1077 7.232330 CAGATAATCTAGAGGTGATTGAGACCA 59.768 40.741 0.00 0.00 35.76 4.02
1070 1078 7.955185 AGATAATCTAGAGGTGATTGAGACCAT 59.045 37.037 0.00 0.00 35.76 3.55
1071 1079 5.804944 ATCTAGAGGTGATTGAGACCATG 57.195 43.478 0.00 0.00 35.76 3.66
1072 1080 2.706339 AGAGGTGATTGAGACCATGC 57.294 50.000 0.00 0.00 35.76 4.06
1073 1081 1.911357 AGAGGTGATTGAGACCATGCA 59.089 47.619 0.00 0.00 35.76 3.96
1074 1082 2.093075 AGAGGTGATTGAGACCATGCAG 60.093 50.000 0.00 0.00 35.76 4.41
1075 1083 1.064906 AGGTGATTGAGACCATGCAGG 60.065 52.381 0.00 0.00 45.67 4.85
1076 1084 1.065199 GGTGATTGAGACCATGCAGGA 60.065 52.381 0.00 0.00 41.22 3.86
1077 1085 2.422519 GGTGATTGAGACCATGCAGGAT 60.423 50.000 0.00 0.00 41.22 3.24
1078 1086 2.617308 GTGATTGAGACCATGCAGGATG 59.383 50.000 0.00 0.00 41.22 3.51
1086 1094 3.398694 CATGCAGGATGGAGGACAG 57.601 57.895 0.00 0.00 42.26 3.51
1087 1095 0.545171 CATGCAGGATGGAGGACAGT 59.455 55.000 0.00 0.00 42.26 3.55
1088 1096 0.835941 ATGCAGGATGGAGGACAGTC 59.164 55.000 0.00 0.00 42.42 3.51
1089 1097 0.545071 TGCAGGATGGAGGACAGTCA 60.545 55.000 2.17 0.00 35.86 3.41
1090 1098 0.615331 GCAGGATGGAGGACAGTCAA 59.385 55.000 2.17 0.00 35.86 3.18
1091 1099 1.677217 GCAGGATGGAGGACAGTCAAC 60.677 57.143 2.17 0.00 35.86 3.18
1092 1100 0.898320 AGGATGGAGGACAGTCAACG 59.102 55.000 2.17 0.00 0.00 4.10
1093 1101 0.108138 GGATGGAGGACAGTCAACGG 60.108 60.000 2.17 0.00 0.00 4.44
1094 1102 0.108138 GATGGAGGACAGTCAACGGG 60.108 60.000 2.17 0.00 0.00 5.28
1095 1103 0.836400 ATGGAGGACAGTCAACGGGT 60.836 55.000 2.17 0.00 0.00 5.28
1096 1104 1.004918 GGAGGACAGTCAACGGGTG 60.005 63.158 2.17 0.00 0.00 4.61
1097 1105 1.668151 GAGGACAGTCAACGGGTGC 60.668 63.158 2.17 0.00 0.00 5.01
1098 1106 3.041940 GGACAGTCAACGGGTGCG 61.042 66.667 2.17 0.00 0.00 5.34
1099 1107 3.041940 GACAGTCAACGGGTGCGG 61.042 66.667 0.00 0.00 0.00 5.69
1102 1110 4.988598 AGTCAACGGGTGCGGCAG 62.989 66.667 1.18 0.00 0.00 4.85
1113 1121 3.181290 GCGGCAGCGGCAATTTTC 61.181 61.111 19.49 0.00 43.71 2.29
1114 1122 2.875711 CGGCAGCGGCAATTTTCG 60.876 61.111 11.88 0.00 43.71 3.46
1115 1123 2.566010 GGCAGCGGCAATTTTCGA 59.434 55.556 11.88 0.00 43.71 3.71
1116 1124 1.139520 GGCAGCGGCAATTTTCGAT 59.860 52.632 11.88 0.00 43.71 3.59
1117 1125 1.141591 GGCAGCGGCAATTTTCGATG 61.142 55.000 11.88 10.06 44.27 3.84
1118 1126 0.179166 GCAGCGGCAATTTTCGATGA 60.179 50.000 16.41 0.00 44.21 2.92
1119 1127 1.538276 CAGCGGCAATTTTCGATGAC 58.462 50.000 1.45 0.00 44.21 3.06
1120 1128 1.131126 CAGCGGCAATTTTCGATGACT 59.869 47.619 1.45 0.00 44.21 3.41
1121 1129 1.131126 AGCGGCAATTTTCGATGACTG 59.869 47.619 1.45 0.00 0.00 3.51
1122 1130 1.538276 CGGCAATTTTCGATGACTGC 58.462 50.000 0.00 0.00 0.00 4.40
1123 1131 1.131126 CGGCAATTTTCGATGACTGCT 59.869 47.619 9.15 0.00 0.00 4.24
1124 1132 2.414559 CGGCAATTTTCGATGACTGCTT 60.415 45.455 9.15 0.00 0.00 3.91
1125 1133 3.174375 GGCAATTTTCGATGACTGCTTC 58.826 45.455 9.15 0.00 0.00 3.86
1126 1134 3.174375 GCAATTTTCGATGACTGCTTCC 58.826 45.455 0.00 0.00 0.00 3.46
1127 1135 3.366273 GCAATTTTCGATGACTGCTTCCA 60.366 43.478 0.00 0.00 0.00 3.53
1128 1136 4.161333 CAATTTTCGATGACTGCTTCCAC 58.839 43.478 0.00 0.00 0.00 4.02
1129 1137 2.839486 TTTCGATGACTGCTTCCACT 57.161 45.000 0.00 0.00 0.00 4.00
1130 1138 3.953712 TTTCGATGACTGCTTCCACTA 57.046 42.857 0.00 0.00 0.00 2.74
1131 1139 2.941453 TCGATGACTGCTTCCACTAC 57.059 50.000 0.00 0.00 0.00 2.73
1132 1140 1.132453 TCGATGACTGCTTCCACTACG 59.868 52.381 0.00 0.00 0.00 3.51
1133 1141 1.281899 GATGACTGCTTCCACTACGC 58.718 55.000 0.00 0.00 0.00 4.42
1134 1142 0.608130 ATGACTGCTTCCACTACGCA 59.392 50.000 0.00 0.00 0.00 5.24
1135 1143 0.608130 TGACTGCTTCCACTACGCAT 59.392 50.000 0.00 0.00 32.62 4.73
1136 1144 1.002366 GACTGCTTCCACTACGCATG 58.998 55.000 0.00 0.00 32.62 4.06
1137 1145 0.321671 ACTGCTTCCACTACGCATGT 59.678 50.000 0.00 0.00 32.62 3.21
1138 1146 0.723414 CTGCTTCCACTACGCATGTG 59.277 55.000 4.30 4.30 32.62 3.21
1139 1147 0.320050 TGCTTCCACTACGCATGTGA 59.680 50.000 14.43 0.00 37.60 3.58
1140 1148 1.066215 TGCTTCCACTACGCATGTGAT 60.066 47.619 14.43 0.00 37.60 3.06
1141 1149 2.009774 GCTTCCACTACGCATGTGATT 58.990 47.619 14.43 0.00 37.60 2.57
1142 1150 2.420022 GCTTCCACTACGCATGTGATTT 59.580 45.455 14.43 0.00 37.60 2.17
1143 1151 3.119849 GCTTCCACTACGCATGTGATTTT 60.120 43.478 14.43 0.00 37.60 1.82
1144 1152 4.094294 GCTTCCACTACGCATGTGATTTTA 59.906 41.667 14.43 0.00 37.60 1.52
1145 1153 5.220854 GCTTCCACTACGCATGTGATTTTAT 60.221 40.000 14.43 0.00 37.60 1.40
1146 1154 5.984233 TCCACTACGCATGTGATTTTATC 57.016 39.130 14.43 0.00 37.60 1.75
1147 1155 5.423886 TCCACTACGCATGTGATTTTATCA 58.576 37.500 14.43 0.00 37.60 2.15
1148 1156 6.054941 TCCACTACGCATGTGATTTTATCAT 58.945 36.000 14.43 0.00 42.04 2.45
1149 1157 6.018016 TCCACTACGCATGTGATTTTATCATG 60.018 38.462 14.43 0.00 42.04 3.07
1150 1158 6.018016 CCACTACGCATGTGATTTTATCATGA 60.018 38.462 14.43 0.00 42.04 3.07
1151 1159 6.847792 CACTACGCATGTGATTTTATCATGAC 59.152 38.462 14.43 0.00 42.04 3.06
1152 1160 6.763135 ACTACGCATGTGATTTTATCATGACT 59.237 34.615 14.43 0.00 42.04 3.41
1153 1161 7.926018 ACTACGCATGTGATTTTATCATGACTA 59.074 33.333 14.43 0.00 42.04 2.59
1154 1162 7.182361 ACGCATGTGATTTTATCATGACTAG 57.818 36.000 14.43 0.00 42.04 2.57
1155 1163 6.986231 ACGCATGTGATTTTATCATGACTAGA 59.014 34.615 14.43 0.00 42.04 2.43
1156 1164 7.658982 ACGCATGTGATTTTATCATGACTAGAT 59.341 33.333 14.43 0.00 42.04 1.98
1157 1165 8.501580 CGCATGTGATTTTATCATGACTAGATT 58.498 33.333 0.00 0.00 42.04 2.40
1158 1166 9.823098 GCATGTGATTTTATCATGACTAGATTC 57.177 33.333 0.00 0.00 42.04 2.52
1160 1168 9.987272 ATGTGATTTTATCATGACTAGATTCGA 57.013 29.630 0.00 0.00 42.04 3.71
1161 1169 9.816354 TGTGATTTTATCATGACTAGATTCGAA 57.184 29.630 0.00 0.00 42.04 3.71
1163 1171 9.816354 TGATTTTATCATGACTAGATTCGAACA 57.184 29.630 0.00 0.00 33.59 3.18
1167 1175 9.599866 TTTATCATGACTAGATTCGAACATTGT 57.400 29.630 0.00 0.00 0.00 2.71
1170 1178 9.770097 ATCATGACTAGATTCGAACATTGTAAT 57.230 29.630 0.00 0.00 0.00 1.89
1174 1182 9.952188 TGACTAGATTCGAACATTGTAATAGAG 57.048 33.333 0.00 0.00 0.00 2.43
1177 1185 9.619316 CTAGATTCGAACATTGTAATAGAGAGG 57.381 37.037 0.00 0.00 0.00 3.69
1178 1186 6.926272 AGATTCGAACATTGTAATAGAGAGGC 59.074 38.462 0.00 0.00 0.00 4.70
1179 1187 5.592104 TCGAACATTGTAATAGAGAGGCA 57.408 39.130 0.00 0.00 0.00 4.75
1180 1188 5.972935 TCGAACATTGTAATAGAGAGGCAA 58.027 37.500 0.00 0.00 0.00 4.52
1181 1189 6.403049 TCGAACATTGTAATAGAGAGGCAAA 58.597 36.000 0.00 0.00 0.00 3.68
1182 1190 7.047891 TCGAACATTGTAATAGAGAGGCAAAT 58.952 34.615 0.00 0.00 0.00 2.32
1183 1191 8.201464 TCGAACATTGTAATAGAGAGGCAAATA 58.799 33.333 0.00 0.00 0.00 1.40
1184 1192 8.491152 CGAACATTGTAATAGAGAGGCAAATAG 58.509 37.037 0.00 0.00 0.00 1.73
1185 1193 9.547753 GAACATTGTAATAGAGAGGCAAATAGA 57.452 33.333 0.00 0.00 0.00 1.98
1186 1194 9.553064 AACATTGTAATAGAGAGGCAAATAGAG 57.447 33.333 0.00 0.00 0.00 2.43
1187 1195 8.709308 ACATTGTAATAGAGAGGCAAATAGAGT 58.291 33.333 0.00 0.00 0.00 3.24
1190 1198 7.887381 TGTAATAGAGAGGCAAATAGAGTAGC 58.113 38.462 0.00 0.00 0.00 3.58
1191 1199 6.985653 AATAGAGAGGCAAATAGAGTAGCA 57.014 37.500 0.00 0.00 0.00 3.49
1192 1200 4.664150 AGAGAGGCAAATAGAGTAGCAC 57.336 45.455 0.00 0.00 0.00 4.40
1193 1201 4.026744 AGAGAGGCAAATAGAGTAGCACA 58.973 43.478 0.00 0.00 0.00 4.57
1194 1202 4.653341 AGAGAGGCAAATAGAGTAGCACAT 59.347 41.667 0.00 0.00 0.00 3.21
1195 1203 4.701765 AGAGGCAAATAGAGTAGCACATG 58.298 43.478 0.00 0.00 0.00 3.21
1196 1204 4.406972 AGAGGCAAATAGAGTAGCACATGA 59.593 41.667 0.00 0.00 0.00 3.07
1197 1205 5.102953 AGGCAAATAGAGTAGCACATGAA 57.897 39.130 0.00 0.00 0.00 2.57
1198 1206 4.878397 AGGCAAATAGAGTAGCACATGAAC 59.122 41.667 0.00 0.00 0.00 3.18
1199 1207 4.878397 GGCAAATAGAGTAGCACATGAACT 59.122 41.667 0.00 0.00 0.00 3.01
1200 1208 5.355350 GGCAAATAGAGTAGCACATGAACTT 59.645 40.000 0.00 0.00 0.00 2.66
1201 1209 6.253746 GCAAATAGAGTAGCACATGAACTTG 58.746 40.000 0.00 0.00 0.00 3.16
1202 1210 6.253746 CAAATAGAGTAGCACATGAACTTGC 58.746 40.000 0.00 0.00 39.16 4.01
1230 1238 9.950496 AGATTAGCTAGATTTTCTTCAACTTCA 57.050 29.630 0.00 0.00 0.00 3.02
1232 1240 9.950496 ATTAGCTAGATTTTCTTCAACTTCAGA 57.050 29.630 0.00 0.00 0.00 3.27
1233 1241 9.950496 TTAGCTAGATTTTCTTCAACTTCAGAT 57.050 29.630 0.00 0.00 0.00 2.90
1234 1242 8.860780 AGCTAGATTTTCTTCAACTTCAGATT 57.139 30.769 0.00 0.00 0.00 2.40
1235 1243 8.728833 AGCTAGATTTTCTTCAACTTCAGATTG 58.271 33.333 0.00 0.00 0.00 2.67
1236 1244 7.967303 GCTAGATTTTCTTCAACTTCAGATTGG 59.033 37.037 0.00 0.00 0.00 3.16
1237 1245 7.830099 AGATTTTCTTCAACTTCAGATTGGT 57.170 32.000 0.00 0.00 0.00 3.67
1238 1246 8.242729 AGATTTTCTTCAACTTCAGATTGGTT 57.757 30.769 0.00 0.00 0.00 3.67
1239 1247 8.699130 AGATTTTCTTCAACTTCAGATTGGTTT 58.301 29.630 0.00 0.00 0.00 3.27
1240 1248 8.652810 ATTTTCTTCAACTTCAGATTGGTTTG 57.347 30.769 0.00 0.00 0.00 2.93
1241 1249 7.403312 TTTCTTCAACTTCAGATTGGTTTGA 57.597 32.000 0.00 0.00 0.00 2.69
1242 1250 6.624352 TCTTCAACTTCAGATTGGTTTGAG 57.376 37.500 0.00 0.00 0.00 3.02
1243 1251 5.532406 TCTTCAACTTCAGATTGGTTTGAGG 59.468 40.000 0.00 0.00 0.00 3.86
1244 1252 5.047566 TCAACTTCAGATTGGTTTGAGGA 57.952 39.130 0.00 0.00 0.00 3.71
1245 1253 5.065914 TCAACTTCAGATTGGTTTGAGGAG 58.934 41.667 0.00 0.00 0.00 3.69
1246 1254 3.416156 ACTTCAGATTGGTTTGAGGAGC 58.584 45.455 0.00 0.00 0.00 4.70
1247 1255 2.496899 TCAGATTGGTTTGAGGAGCC 57.503 50.000 0.00 0.00 0.00 4.70
1248 1256 1.988107 TCAGATTGGTTTGAGGAGCCT 59.012 47.619 0.00 0.00 0.00 4.58
1249 1257 3.181329 TCAGATTGGTTTGAGGAGCCTA 58.819 45.455 0.00 0.00 0.00 3.93
1250 1258 3.782523 TCAGATTGGTTTGAGGAGCCTAT 59.217 43.478 0.00 0.00 0.00 2.57
1251 1259 4.133078 CAGATTGGTTTGAGGAGCCTATC 58.867 47.826 0.00 0.00 39.80 2.08
1252 1260 3.782523 AGATTGGTTTGAGGAGCCTATCA 59.217 43.478 0.00 0.00 41.17 2.15
1253 1261 4.228210 AGATTGGTTTGAGGAGCCTATCAA 59.772 41.667 0.00 0.00 41.17 2.57
1254 1262 4.591321 TTGGTTTGAGGAGCCTATCAAT 57.409 40.909 0.00 0.00 35.47 2.57
1255 1263 3.889815 TGGTTTGAGGAGCCTATCAATG 58.110 45.455 0.00 0.00 35.47 2.82
1256 1264 3.523157 TGGTTTGAGGAGCCTATCAATGA 59.477 43.478 0.00 0.00 35.47 2.57
1257 1265 4.018506 TGGTTTGAGGAGCCTATCAATGAA 60.019 41.667 0.00 0.00 35.47 2.57
1258 1266 4.949856 GGTTTGAGGAGCCTATCAATGAAA 59.050 41.667 0.00 0.00 35.47 2.69
1259 1267 5.595952 GGTTTGAGGAGCCTATCAATGAAAT 59.404 40.000 0.00 0.00 35.47 2.17
1260 1268 6.097412 GGTTTGAGGAGCCTATCAATGAAATT 59.903 38.462 0.00 0.00 35.47 1.82
1277 1285 8.408043 AATGAAATTGTACTCATCCTCACAAA 57.592 30.769 0.00 0.00 33.44 2.83
1278 1286 7.202016 TGAAATTGTACTCATCCTCACAAAC 57.798 36.000 0.00 0.00 34.79 2.93
1279 1287 5.862924 AATTGTACTCATCCTCACAAACG 57.137 39.130 0.00 0.00 34.79 3.60
1280 1288 4.594123 TTGTACTCATCCTCACAAACGA 57.406 40.909 0.00 0.00 0.00 3.85
1281 1289 4.801330 TGTACTCATCCTCACAAACGAT 57.199 40.909 0.00 0.00 0.00 3.73
1282 1290 4.494484 TGTACTCATCCTCACAAACGATG 58.506 43.478 0.00 0.00 35.71 3.84
1283 1291 3.685139 ACTCATCCTCACAAACGATGT 57.315 42.857 0.00 0.00 45.34 3.06
1284 1292 4.801330 ACTCATCCTCACAAACGATGTA 57.199 40.909 0.00 0.00 41.46 2.29
1285 1293 4.495422 ACTCATCCTCACAAACGATGTAC 58.505 43.478 0.00 0.00 41.46 2.90
1286 1294 4.220821 ACTCATCCTCACAAACGATGTACT 59.779 41.667 0.00 0.00 41.46 2.73
1287 1295 5.147330 TCATCCTCACAAACGATGTACTT 57.853 39.130 0.00 0.00 41.46 2.24
1288 1296 4.929211 TCATCCTCACAAACGATGTACTTG 59.071 41.667 0.00 0.00 41.46 3.16
1289 1297 4.330944 TCCTCACAAACGATGTACTTGT 57.669 40.909 0.00 0.00 41.46 3.16
1290 1298 4.699637 TCCTCACAAACGATGTACTTGTT 58.300 39.130 0.00 0.00 41.46 2.83
1291 1299 5.845103 TCCTCACAAACGATGTACTTGTTA 58.155 37.500 0.00 0.00 41.46 2.41
1292 1300 6.460781 TCCTCACAAACGATGTACTTGTTAT 58.539 36.000 0.00 0.00 41.46 1.89
1293 1301 6.932400 TCCTCACAAACGATGTACTTGTTATT 59.068 34.615 0.00 0.00 41.46 1.40
1294 1302 7.442969 TCCTCACAAACGATGTACTTGTTATTT 59.557 33.333 0.00 0.00 41.46 1.40
1295 1303 7.744715 CCTCACAAACGATGTACTTGTTATTTC 59.255 37.037 0.00 0.00 41.46 2.17
1296 1304 8.373048 TCACAAACGATGTACTTGTTATTTCT 57.627 30.769 0.00 0.00 41.46 2.52
1297 1305 9.478768 TCACAAACGATGTACTTGTTATTTCTA 57.521 29.630 0.00 0.00 41.46 2.10
1361 1369 4.843516 AGAAATCTTCTTCTCCTGTCTGGT 59.156 41.667 0.00 0.00 36.36 4.00
1398 1406 3.265791 CAAGCCTAGCCTTGTACTTCTG 58.734 50.000 5.28 0.00 37.89 3.02
1410 1418 6.573680 GCCTTGTACTTCTGAACAGTACCATA 60.574 42.308 14.09 3.25 44.18 2.74
1419 1428 3.709653 TGAACAGTACCATAGGCCTAAGG 59.290 47.826 28.67 28.67 0.00 2.69
1421 1430 3.306613 ACAGTACCATAGGCCTAAGGTC 58.693 50.000 36.68 27.27 38.08 3.85
1425 1434 2.859951 ACCATAGGCCTAAGGTCCTTT 58.140 47.619 30.00 10.72 32.19 3.11
1473 1482 5.729974 GTTGGAAACCATAAGGACGATAC 57.270 43.478 0.00 0.00 42.21 2.24
1490 1499 3.492656 CGATACGTGATTTCCCATGTCCT 60.493 47.826 0.00 0.00 37.46 3.85
1507 1516 3.010420 GTCCTGTTAGCCAAGATGGAAC 58.990 50.000 0.00 0.00 40.96 3.62
1551 1560 1.961180 GCCAGTAGTCAGCATCCGGT 61.961 60.000 0.00 0.00 0.00 5.28
1566 1575 0.947244 CCGGTGATGCATAAGCTTCC 59.053 55.000 11.46 0.00 42.51 3.46
1569 1578 1.869767 GGTGATGCATAAGCTTCCGAG 59.130 52.381 0.00 0.00 42.51 4.63
1632 1642 3.159213 TCATCACCAAGGACTTTGCAT 57.841 42.857 0.00 0.00 35.37 3.96
1639 1649 3.330701 ACCAAGGACTTTGCATTCCTCTA 59.669 43.478 11.42 0.00 41.72 2.43
1651 1661 3.070734 GCATTCCTCTATCTCTTGCTCCA 59.929 47.826 0.00 0.00 0.00 3.86
1685 1695 3.369892 CCTCATCATCCTCCGTGAAACTT 60.370 47.826 0.00 0.00 31.75 2.66
1697 1707 5.577835 TCCGTGAAACTTTCATCACTTTTG 58.422 37.500 7.47 0.00 42.93 2.44
1699 1709 6.316640 TCCGTGAAACTTTCATCACTTTTGTA 59.683 34.615 7.47 0.00 42.93 2.41
1700 1710 6.413818 CCGTGAAACTTTCATCACTTTTGTAC 59.586 38.462 7.47 0.00 42.93 2.90
1764 1774 5.952347 TCAGATTCCAGTCTAGAAGTGCTTA 59.048 40.000 0.00 0.00 0.00 3.09
1765 1775 6.609212 TCAGATTCCAGTCTAGAAGTGCTTAT 59.391 38.462 0.00 0.00 0.00 1.73
1879 1890 4.227300 ACCACTAGAAATCTATGGCCAACA 59.773 41.667 10.96 0.00 33.90 3.33
1888 1899 4.235079 TCTATGGCCAACACTATGCTTT 57.765 40.909 10.96 0.00 0.00 3.51
1944 1955 1.134551 TCCCAACTTGCACTTTTTGGC 60.135 47.619 8.63 0.00 37.73 4.52
1945 1956 1.406614 CCCAACTTGCACTTTTTGGCA 60.407 47.619 8.63 0.00 37.73 4.92
1972 1983 3.119316 ACACATTGACTTTCGCCAAACAA 60.119 39.130 0.00 0.00 0.00 2.83
1974 1985 3.119316 ACATTGACTTTCGCCAAACAACA 60.119 39.130 0.00 0.00 0.00 3.33
1992 2004 1.597663 ACACAAGTGCGCAAGTAAGAC 59.402 47.619 14.00 0.00 41.68 3.01
2025 2037 6.924111 TCTTTTCTTTTCCCATTGCTCATAC 58.076 36.000 0.00 0.00 0.00 2.39
2052 2064 3.375699 AGTCTCATTATCCTTCGTGGGT 58.624 45.455 0.00 0.00 36.20 4.51
2059 2071 6.576185 TCATTATCCTTCGTGGGTACTTTAC 58.424 40.000 0.00 0.00 36.20 2.01
2101 2114 0.270699 TATAGCCTCCCCCACCATGT 59.729 55.000 0.00 0.00 0.00 3.21
2144 2157 2.507407 ACATGGCGGTAACCAAATCT 57.493 45.000 0.00 0.00 44.65 2.40
2145 2158 3.637911 ACATGGCGGTAACCAAATCTA 57.362 42.857 0.00 0.00 44.65 1.98
2150 2163 5.362105 TGGCGGTAACCAAATCTATTAGT 57.638 39.130 0.00 0.00 36.55 2.24
2156 2169 7.440255 GCGGTAACCAAATCTATTAGTGTATGT 59.560 37.037 0.00 0.00 0.00 2.29
2209 2224 2.696187 GTGAATAGGGAGGTCCTCTCAC 59.304 54.545 21.35 19.22 44.06 3.51
2221 2236 4.585162 AGGTCCTCTCACGAATAATACCAG 59.415 45.833 0.00 0.00 0.00 4.00
2227 2242 4.712829 TCTCACGAATAATACCAGGTTCCA 59.287 41.667 0.00 0.00 0.00 3.53
2230 2245 5.104693 TCACGAATAATACCAGGTTCCACAT 60.105 40.000 0.00 0.00 0.00 3.21
2269 2284 7.181125 ACTCATTAGAAAAGTACTCTCCACCAT 59.819 37.037 0.00 0.00 0.00 3.55
2279 2294 2.113807 CTCTCCACCATGATCAGACCA 58.886 52.381 0.09 0.00 0.00 4.02
2295 2310 9.058174 TGATCAGACCAAACTCGTTTTATTTTA 57.942 29.630 0.00 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.585047 CCCCTGTATTTTGAGCTACAGTAAC 59.415 44.000 10.38 0.00 42.04 2.50
1 2 5.249852 ACCCCTGTATTTTGAGCTACAGTAA 59.750 40.000 10.38 0.36 42.04 2.24
2 3 4.781087 ACCCCTGTATTTTGAGCTACAGTA 59.219 41.667 10.38 0.00 42.04 2.74
3 4 3.587506 ACCCCTGTATTTTGAGCTACAGT 59.412 43.478 10.38 0.00 42.04 3.55
4 5 3.941483 CACCCCTGTATTTTGAGCTACAG 59.059 47.826 5.27 5.27 42.84 2.74
5 6 3.329520 ACACCCCTGTATTTTGAGCTACA 59.670 43.478 0.00 0.00 0.00 2.74
6 7 3.951663 ACACCCCTGTATTTTGAGCTAC 58.048 45.455 0.00 0.00 0.00 3.58
7 8 4.650972 AACACCCCTGTATTTTGAGCTA 57.349 40.909 0.00 0.00 0.00 3.32
8 9 3.525800 AACACCCCTGTATTTTGAGCT 57.474 42.857 0.00 0.00 0.00 4.09
9 10 4.076394 TGTAACACCCCTGTATTTTGAGC 58.924 43.478 0.00 0.00 0.00 4.26
10 11 5.622770 GTGTAACACCCCTGTATTTTGAG 57.377 43.478 0.00 0.00 36.32 3.02
24 25 5.851047 AAGTAATAGCGTTGGTGTAACAC 57.149 39.130 0.00 0.00 39.98 3.32
25 26 5.179742 CCAAAGTAATAGCGTTGGTGTAACA 59.820 40.000 0.00 0.00 41.12 2.41
26 27 5.409214 TCCAAAGTAATAGCGTTGGTGTAAC 59.591 40.000 9.75 0.00 44.53 2.50
27 28 5.549347 TCCAAAGTAATAGCGTTGGTGTAA 58.451 37.500 9.75 0.00 44.53 2.41
28 29 5.149973 TCCAAAGTAATAGCGTTGGTGTA 57.850 39.130 9.75 0.00 44.53 2.90
29 30 4.000988 CTCCAAAGTAATAGCGTTGGTGT 58.999 43.478 9.75 0.00 44.53 4.16
30 31 4.000988 ACTCCAAAGTAATAGCGTTGGTG 58.999 43.478 9.75 9.80 44.53 4.17
31 32 4.281898 ACTCCAAAGTAATAGCGTTGGT 57.718 40.909 9.75 0.00 44.53 3.67
46 47 5.534654 CCCTCAAACATTGTAGAAACTCCAA 59.465 40.000 0.00 0.00 0.00 3.53
47 48 5.070001 CCCTCAAACATTGTAGAAACTCCA 58.930 41.667 0.00 0.00 0.00 3.86
80 81 6.684555 GCGATCTACAAAGCACATAAGAAAAG 59.315 38.462 0.00 0.00 0.00 2.27
82 83 5.641636 TGCGATCTACAAAGCACATAAGAAA 59.358 36.000 0.00 0.00 34.39 2.52
99 100 3.057969 TCAAAGGACAACATGCGATCT 57.942 42.857 0.00 0.00 0.00 2.75
103 104 1.002900 ACGTTCAAAGGACAACATGCG 60.003 47.619 0.00 0.00 0.00 4.73
104 105 2.774439 ACGTTCAAAGGACAACATGC 57.226 45.000 0.00 0.00 0.00 4.06
122 123 4.192429 ACAATGATTGCCAAGGCTAAAC 57.808 40.909 12.96 4.91 42.51 2.01
123 124 4.888326 AACAATGATTGCCAAGGCTAAA 57.112 36.364 12.96 0.00 42.51 1.85
154 155 7.845037 CCAGTCATGGCTATCTTTATGATCTA 58.155 38.462 0.00 0.00 40.52 1.98
173 174 2.290260 CCAGTGGTTGATAAGCCAGTCA 60.290 50.000 0.00 0.00 36.36 3.41
195 196 5.452078 TTTGAGTGCTTCGAATGGATTTT 57.548 34.783 0.00 0.00 0.00 1.82
204 205 3.942829 AGAATGGATTTGAGTGCTTCGA 58.057 40.909 0.00 0.00 0.00 3.71
205 206 4.394300 AGAAGAATGGATTTGAGTGCTTCG 59.606 41.667 0.00 0.00 36.53 3.79
206 207 5.893897 AGAAGAATGGATTTGAGTGCTTC 57.106 39.130 0.00 0.00 0.00 3.86
211 212 4.627467 CGTCGAAGAAGAATGGATTTGAGT 59.373 41.667 0.00 0.00 38.59 3.41
215 216 3.334691 TGCGTCGAAGAAGAATGGATTT 58.665 40.909 1.37 0.00 38.59 2.17
226 227 1.202348 AGACACATCATGCGTCGAAGA 59.798 47.619 1.37 0.00 34.82 2.87
253 254 6.485313 AGATCGACTATGGAAGTAGAACTCAG 59.515 42.308 0.00 0.00 42.26 3.35
262 263 5.821470 TCTTAACGAGATCGACTATGGAAGT 59.179 40.000 9.58 0.00 43.02 3.01
279 282 9.988350 ATGTATTGCAAGTAGAAAATCTTAACG 57.012 29.630 4.94 0.00 0.00 3.18
288 291 9.162764 GTTTCCTAGATGTATTGCAAGTAGAAA 57.837 33.333 4.94 1.65 0.00 2.52
293 296 6.714810 TGTTGTTTCCTAGATGTATTGCAAGT 59.285 34.615 4.94 0.00 0.00 3.16
301 304 5.761234 GTGGTGTTGTTGTTTCCTAGATGTA 59.239 40.000 0.00 0.00 0.00 2.29
304 307 4.142038 GGTGGTGTTGTTGTTTCCTAGAT 58.858 43.478 0.00 0.00 0.00 1.98
317 320 2.045561 TACACTTGGTGGTGGTGTTG 57.954 50.000 3.37 0.00 42.92 3.33
318 321 2.756207 GTTTACACTTGGTGGTGGTGTT 59.244 45.455 3.37 0.00 42.92 3.32
319 322 2.291024 TGTTTACACTTGGTGGTGGTGT 60.291 45.455 0.00 0.00 44.75 4.16
381 384 8.109634 ACTTGAGGGTATAGTGATTCAAATTGT 58.890 33.333 0.00 0.00 0.00 2.71
387 390 5.301045 CGGTACTTGAGGGTATAGTGATTCA 59.699 44.000 0.00 0.00 0.00 2.57
413 417 7.598759 TGGAATTCACTATTCTAGGTACTCC 57.401 40.000 7.93 0.00 41.98 3.85
415 419 9.884814 ACTATGGAATTCACTATTCTAGGTACT 57.115 33.333 7.93 0.00 41.98 2.73
445 449 7.549839 AGTCATACGTTATTTGCAAGGTACTA 58.450 34.615 0.00 0.00 38.49 1.82
464 468 0.459899 ATGCGGTTGAGCGAGTCATA 59.540 50.000 6.79 0.00 40.67 2.15
467 471 3.084579 CATGCGGTTGAGCGAGTC 58.915 61.111 6.79 0.00 40.67 3.36
486 490 2.551721 CCAATCTGAGAGGTGTGCACTT 60.552 50.000 19.41 3.42 0.00 3.16
531 536 4.436113 TGGCCTGACATATCATTTGCTA 57.564 40.909 3.32 0.00 33.22 3.49
541 546 4.382685 GCTTGTACTACTTGGCCTGACATA 60.383 45.833 3.32 0.00 0.00 2.29
550 555 5.909621 TGTACCTAGCTTGTACTACTTGG 57.090 43.478 20.43 2.21 39.42 3.61
552 557 6.890814 ACTCATGTACCTAGCTTGTACTACTT 59.109 38.462 20.43 6.71 39.42 2.24
558 563 5.105473 GGTTCACTCATGTACCTAGCTTGTA 60.105 44.000 0.00 0.00 41.78 2.41
623 628 6.049149 TCCTAGCACAGATTAGAAAATTCGG 58.951 40.000 0.00 0.00 0.00 4.30
633 638 6.498303 ACACCATATGATCCTAGCACAGATTA 59.502 38.462 3.65 0.00 0.00 1.75
638 643 6.686484 ATAACACCATATGATCCTAGCACA 57.314 37.500 3.65 0.00 0.00 4.57
640 645 8.664669 TTCTATAACACCATATGATCCTAGCA 57.335 34.615 3.65 0.00 0.00 3.49
660 667 7.289317 TGGATATTCGGACTACAAACCTTCTAT 59.711 37.037 0.00 0.00 0.00 1.98
672 679 3.133362 AGCCGTTTTGGATATTCGGACTA 59.867 43.478 6.09 0.00 43.22 2.59
698 705 7.041508 GCAATCCCACTATATGTTGAGAAGAAG 60.042 40.741 0.00 0.00 0.00 2.85
699 706 6.767902 GCAATCCCACTATATGTTGAGAAGAA 59.232 38.462 0.00 0.00 0.00 2.52
713 720 6.071616 GGAATTACACTTTTGCAATCCCACTA 60.072 38.462 0.00 0.00 0.00 2.74
714 721 5.279456 GGAATTACACTTTTGCAATCCCACT 60.279 40.000 0.00 0.00 0.00 4.00
746 753 7.410120 TGAACATCAAGCTACTGAGAGATAA 57.590 36.000 0.00 0.00 0.00 1.75
777 784 1.298953 ATACCTGGGTGTGGCTGATT 58.701 50.000 2.07 0.00 0.00 2.57
892 900 2.104281 GGTGTGGGCGAAGGACTTATAT 59.896 50.000 0.00 0.00 0.00 0.86
898 906 0.462047 CTATGGTGTGGGCGAAGGAC 60.462 60.000 0.00 0.00 0.00 3.85
909 917 9.764363 CAAATGTGTATACTATCACTATGGTGT 57.236 33.333 9.23 0.00 43.41 4.16
918 926 8.536175 TCCAACTGACAAATGTGTATACTATCA 58.464 33.333 4.17 1.88 38.41 2.15
940 948 5.815740 GCTAGACGAGGAAATTTACATCCAA 59.184 40.000 2.58 0.00 38.23 3.53
941 949 5.128827 AGCTAGACGAGGAAATTTACATCCA 59.871 40.000 2.58 0.00 38.23 3.41
942 950 5.602628 AGCTAGACGAGGAAATTTACATCC 58.397 41.667 2.58 0.00 35.88 3.51
943 951 6.508777 AGAGCTAGACGAGGAAATTTACATC 58.491 40.000 2.58 0.00 0.00 3.06
944 952 6.322712 AGAGAGCTAGACGAGGAAATTTACAT 59.677 38.462 2.58 0.00 0.00 2.29
945 953 5.652891 AGAGAGCTAGACGAGGAAATTTACA 59.347 40.000 2.58 0.00 0.00 2.41
946 954 6.139048 AGAGAGCTAGACGAGGAAATTTAC 57.861 41.667 0.00 0.00 0.00 2.01
947 955 8.466617 AATAGAGAGCTAGACGAGGAAATTTA 57.533 34.615 0.00 0.00 0.00 1.40
948 956 6.969993 ATAGAGAGCTAGACGAGGAAATTT 57.030 37.500 0.00 0.00 0.00 1.82
949 957 6.969993 AATAGAGAGCTAGACGAGGAAATT 57.030 37.500 0.00 0.00 0.00 1.82
950 958 7.940137 TCTTAATAGAGAGCTAGACGAGGAAAT 59.060 37.037 0.00 0.00 0.00 2.17
951 959 7.281098 TCTTAATAGAGAGCTAGACGAGGAAA 58.719 38.462 0.00 0.00 0.00 3.13
952 960 6.828788 TCTTAATAGAGAGCTAGACGAGGAA 58.171 40.000 0.00 0.00 0.00 3.36
953 961 6.422344 TCTTAATAGAGAGCTAGACGAGGA 57.578 41.667 0.00 0.00 0.00 3.71
954 962 7.499321 TTTCTTAATAGAGAGCTAGACGAGG 57.501 40.000 0.00 0.00 0.00 4.63
955 963 8.617809 ACTTTTCTTAATAGAGAGCTAGACGAG 58.382 37.037 0.00 0.00 0.00 4.18
956 964 8.508883 ACTTTTCTTAATAGAGAGCTAGACGA 57.491 34.615 0.00 0.00 0.00 4.20
957 965 7.584847 CGACTTTTCTTAATAGAGAGCTAGACG 59.415 40.741 0.00 0.00 0.00 4.18
958 966 8.400186 ACGACTTTTCTTAATAGAGAGCTAGAC 58.600 37.037 0.00 0.00 0.00 2.59
959 967 8.508883 ACGACTTTTCTTAATAGAGAGCTAGA 57.491 34.615 0.00 0.00 0.00 2.43
960 968 8.399425 TGACGACTTTTCTTAATAGAGAGCTAG 58.601 37.037 0.00 0.00 0.00 3.42
961 969 8.277490 TGACGACTTTTCTTAATAGAGAGCTA 57.723 34.615 0.00 0.00 0.00 3.32
962 970 7.159322 TGACGACTTTTCTTAATAGAGAGCT 57.841 36.000 0.00 0.00 0.00 4.09
963 971 7.995463 ATGACGACTTTTCTTAATAGAGAGC 57.005 36.000 0.00 0.00 0.00 4.09
983 991 6.042777 TCTTTCATCAGATGGACGTTATGAC 58.957 40.000 10.67 0.00 0.00 3.06
984 992 6.220726 TCTTTCATCAGATGGACGTTATGA 57.779 37.500 10.67 0.00 0.00 2.15
985 993 5.050499 GCTCTTTCATCAGATGGACGTTATG 60.050 44.000 10.67 0.00 0.00 1.90
986 994 5.053145 GCTCTTTCATCAGATGGACGTTAT 58.947 41.667 10.67 0.00 0.00 1.89
987 995 4.081697 TGCTCTTTCATCAGATGGACGTTA 60.082 41.667 10.67 0.00 0.00 3.18
988 996 3.265791 GCTCTTTCATCAGATGGACGTT 58.734 45.455 10.67 0.00 0.00 3.99
989 997 2.234661 TGCTCTTTCATCAGATGGACGT 59.765 45.455 10.67 0.00 0.00 4.34
990 998 2.897436 TGCTCTTTCATCAGATGGACG 58.103 47.619 10.67 0.00 0.00 4.79
991 999 4.096081 CCTTTGCTCTTTCATCAGATGGAC 59.904 45.833 10.67 0.00 0.00 4.02
992 1000 4.267536 CCTTTGCTCTTTCATCAGATGGA 58.732 43.478 10.67 0.00 0.00 3.41
993 1001 3.380637 CCCTTTGCTCTTTCATCAGATGG 59.619 47.826 10.67 0.00 0.00 3.51
994 1002 3.181489 GCCCTTTGCTCTTTCATCAGATG 60.181 47.826 3.71 3.71 36.87 2.90
995 1003 3.022406 GCCCTTTGCTCTTTCATCAGAT 58.978 45.455 0.00 0.00 36.87 2.90
996 1004 2.224843 TGCCCTTTGCTCTTTCATCAGA 60.225 45.455 0.00 0.00 42.00 3.27
997 1005 2.163815 CTGCCCTTTGCTCTTTCATCAG 59.836 50.000 0.00 0.00 42.00 2.90
998 1006 2.165167 CTGCCCTTTGCTCTTTCATCA 58.835 47.619 0.00 0.00 42.00 3.07
999 1007 1.475682 CCTGCCCTTTGCTCTTTCATC 59.524 52.381 0.00 0.00 42.00 2.92
1000 1008 1.553706 CCTGCCCTTTGCTCTTTCAT 58.446 50.000 0.00 0.00 42.00 2.57
1001 1009 0.540365 CCCTGCCCTTTGCTCTTTCA 60.540 55.000 0.00 0.00 42.00 2.69
1002 1010 0.540597 ACCCTGCCCTTTGCTCTTTC 60.541 55.000 0.00 0.00 42.00 2.62
1003 1011 0.829182 CACCCTGCCCTTTGCTCTTT 60.829 55.000 0.00 0.00 42.00 2.52
1004 1012 1.228675 CACCCTGCCCTTTGCTCTT 60.229 57.895 0.00 0.00 42.00 2.85
1005 1013 2.437897 CACCCTGCCCTTTGCTCT 59.562 61.111 0.00 0.00 42.00 4.09
1006 1014 3.376918 GCACCCTGCCCTTTGCTC 61.377 66.667 0.00 0.00 42.00 4.26
1007 1015 3.754586 TTGCACCCTGCCCTTTGCT 62.755 57.895 0.00 0.00 44.23 3.91
1008 1016 2.511545 GATTGCACCCTGCCCTTTGC 62.512 60.000 0.00 0.00 44.23 3.68
1009 1017 1.593265 GATTGCACCCTGCCCTTTG 59.407 57.895 0.00 0.00 44.23 2.77
1010 1018 1.978617 CGATTGCACCCTGCCCTTT 60.979 57.895 0.00 0.00 44.23 3.11
1011 1019 2.361610 CGATTGCACCCTGCCCTT 60.362 61.111 0.00 0.00 44.23 3.95
1014 1022 3.697439 TAGGCGATTGCACCCTGCC 62.697 63.158 7.38 9.75 44.23 4.85
1015 1023 1.103398 ATTAGGCGATTGCACCCTGC 61.103 55.000 7.38 0.00 45.35 4.85
1016 1024 0.947244 GATTAGGCGATTGCACCCTG 59.053 55.000 7.38 0.00 45.35 4.45
1017 1025 0.546122 TGATTAGGCGATTGCACCCT 59.454 50.000 7.38 0.00 45.35 4.34
1018 1026 1.537202 GATGATTAGGCGATTGCACCC 59.463 52.381 7.38 0.00 45.35 4.61
1019 1027 2.221169 TGATGATTAGGCGATTGCACC 58.779 47.619 7.38 0.00 45.35 5.01
1020 1028 3.313526 AGTTGATGATTAGGCGATTGCAC 59.686 43.478 7.38 0.00 45.35 4.57
1021 1029 3.544684 AGTTGATGATTAGGCGATTGCA 58.455 40.909 7.38 0.00 45.35 4.08
1022 1030 3.561310 TGAGTTGATGATTAGGCGATTGC 59.439 43.478 0.00 0.00 41.71 3.56
1023 1031 5.052481 TCTGAGTTGATGATTAGGCGATTG 58.948 41.667 0.00 0.00 0.00 2.67
1024 1032 5.282055 TCTGAGTTGATGATTAGGCGATT 57.718 39.130 0.00 0.00 0.00 3.34
1025 1033 4.944619 TCTGAGTTGATGATTAGGCGAT 57.055 40.909 0.00 0.00 0.00 4.58
1026 1034 4.944619 ATCTGAGTTGATGATTAGGCGA 57.055 40.909 0.00 0.00 0.00 5.54
1027 1035 7.095910 AGATTATCTGAGTTGATGATTAGGCG 58.904 38.462 0.00 0.00 0.00 5.52
1028 1036 9.585099 CTAGATTATCTGAGTTGATGATTAGGC 57.415 37.037 4.78 0.00 0.00 3.93
1032 1040 9.378504 ACCTCTAGATTATCTGAGTTGATGATT 57.621 33.333 4.78 0.00 0.00 2.57
1033 1041 8.805175 CACCTCTAGATTATCTGAGTTGATGAT 58.195 37.037 4.78 0.00 0.00 2.45
1034 1042 8.001292 TCACCTCTAGATTATCTGAGTTGATGA 58.999 37.037 13.38 10.89 27.50 2.92
1035 1043 8.175925 TCACCTCTAGATTATCTGAGTTGATG 57.824 38.462 13.38 9.58 27.50 3.07
1036 1044 8.954834 ATCACCTCTAGATTATCTGAGTTGAT 57.045 34.615 18.75 18.75 33.55 2.57
1037 1045 8.637099 CAATCACCTCTAGATTATCTGAGTTGA 58.363 37.037 16.93 16.93 34.14 3.18
1038 1046 8.637099 TCAATCACCTCTAGATTATCTGAGTTG 58.363 37.037 4.78 8.46 34.14 3.16
1039 1047 8.774546 TCAATCACCTCTAGATTATCTGAGTT 57.225 34.615 4.78 0.00 34.14 3.01
1040 1048 8.224025 TCTCAATCACCTCTAGATTATCTGAGT 58.776 37.037 4.78 0.00 34.14 3.41
1041 1049 8.514594 GTCTCAATCACCTCTAGATTATCTGAG 58.485 40.741 4.78 9.27 34.14 3.35
1042 1050 7.450014 GGTCTCAATCACCTCTAGATTATCTGA 59.550 40.741 4.78 0.20 34.14 3.27
1043 1051 7.232330 TGGTCTCAATCACCTCTAGATTATCTG 59.768 40.741 4.78 0.00 34.14 2.90
1044 1052 7.301420 TGGTCTCAATCACCTCTAGATTATCT 58.699 38.462 0.00 0.00 34.14 1.98
1045 1053 7.531857 TGGTCTCAATCACCTCTAGATTATC 57.468 40.000 0.00 0.00 34.14 1.75
1046 1054 7.526860 GCATGGTCTCAATCACCTCTAGATTAT 60.527 40.741 0.00 0.00 34.14 1.28
1047 1055 6.239430 GCATGGTCTCAATCACCTCTAGATTA 60.239 42.308 0.00 0.00 34.14 1.75
1048 1056 5.454471 GCATGGTCTCAATCACCTCTAGATT 60.454 44.000 0.00 0.00 36.19 2.40
1049 1057 4.040217 GCATGGTCTCAATCACCTCTAGAT 59.960 45.833 0.00 0.00 34.66 1.98
1050 1058 3.386078 GCATGGTCTCAATCACCTCTAGA 59.614 47.826 0.00 0.00 34.66 2.43
1051 1059 3.133542 TGCATGGTCTCAATCACCTCTAG 59.866 47.826 0.00 0.00 34.66 2.43
1052 1060 3.106827 TGCATGGTCTCAATCACCTCTA 58.893 45.455 0.00 0.00 34.66 2.43
1053 1061 1.911357 TGCATGGTCTCAATCACCTCT 59.089 47.619 0.00 0.00 34.66 3.69
1054 1062 2.286872 CTGCATGGTCTCAATCACCTC 58.713 52.381 0.00 0.00 34.66 3.85
1055 1063 1.064906 CCTGCATGGTCTCAATCACCT 60.065 52.381 0.00 0.00 34.66 4.00
1056 1064 1.065199 TCCTGCATGGTCTCAATCACC 60.065 52.381 0.00 0.00 37.07 4.02
1057 1065 2.408271 TCCTGCATGGTCTCAATCAC 57.592 50.000 0.00 0.00 37.07 3.06
1058 1066 2.422377 CCATCCTGCATGGTCTCAATCA 60.422 50.000 0.00 0.00 46.72 2.57
1059 1067 2.228059 CCATCCTGCATGGTCTCAATC 58.772 52.381 0.00 0.00 46.72 2.67
1060 1068 2.359981 CCATCCTGCATGGTCTCAAT 57.640 50.000 0.00 0.00 46.72 2.57
1061 1069 3.888424 CCATCCTGCATGGTCTCAA 57.112 52.632 0.00 0.00 46.72 3.02
1068 1076 0.545171 ACTGTCCTCCATCCTGCATG 59.455 55.000 0.00 0.00 0.00 4.06
1069 1077 0.835941 GACTGTCCTCCATCCTGCAT 59.164 55.000 0.00 0.00 0.00 3.96
1070 1078 0.545071 TGACTGTCCTCCATCCTGCA 60.545 55.000 5.17 0.00 0.00 4.41
1071 1079 0.615331 TTGACTGTCCTCCATCCTGC 59.385 55.000 5.17 0.00 0.00 4.85
1072 1080 1.404717 CGTTGACTGTCCTCCATCCTG 60.405 57.143 5.17 0.00 0.00 3.86
1073 1081 0.898320 CGTTGACTGTCCTCCATCCT 59.102 55.000 5.17 0.00 0.00 3.24
1074 1082 0.108138 CCGTTGACTGTCCTCCATCC 60.108 60.000 5.17 0.00 0.00 3.51
1075 1083 0.108138 CCCGTTGACTGTCCTCCATC 60.108 60.000 5.17 0.00 0.00 3.51
1076 1084 0.836400 ACCCGTTGACTGTCCTCCAT 60.836 55.000 5.17 0.00 0.00 3.41
1077 1085 1.458777 ACCCGTTGACTGTCCTCCA 60.459 57.895 5.17 0.00 0.00 3.86
1078 1086 1.004918 CACCCGTTGACTGTCCTCC 60.005 63.158 5.17 0.00 0.00 4.30
1079 1087 1.668151 GCACCCGTTGACTGTCCTC 60.668 63.158 5.17 0.00 0.00 3.71
1080 1088 2.426023 GCACCCGTTGACTGTCCT 59.574 61.111 5.17 0.00 0.00 3.85
1081 1089 3.041940 CGCACCCGTTGACTGTCC 61.042 66.667 5.17 0.00 0.00 4.02
1082 1090 3.041940 CCGCACCCGTTGACTGTC 61.042 66.667 0.00 0.00 0.00 3.51
1085 1093 4.988598 CTGCCGCACCCGTTGACT 62.989 66.667 0.00 0.00 0.00 3.41
1094 1102 4.722855 AAATTGCCGCTGCCGCAC 62.723 61.111 14.99 0.00 36.33 5.34
1095 1103 3.912820 GAAAATTGCCGCTGCCGCA 62.913 57.895 11.54 11.54 36.33 5.69
1096 1104 3.181290 GAAAATTGCCGCTGCCGC 61.181 61.111 6.01 6.01 36.33 6.53
1097 1105 2.597117 ATCGAAAATTGCCGCTGCCG 62.597 55.000 0.00 0.00 36.33 5.69
1098 1106 1.139520 ATCGAAAATTGCCGCTGCC 59.860 52.632 0.00 0.00 36.33 4.85
1099 1107 0.179166 TCATCGAAAATTGCCGCTGC 60.179 50.000 0.00 0.00 38.26 5.25
1100 1108 1.131126 AGTCATCGAAAATTGCCGCTG 59.869 47.619 0.00 0.00 0.00 5.18
1101 1109 1.131126 CAGTCATCGAAAATTGCCGCT 59.869 47.619 0.00 0.00 0.00 5.52
1102 1110 1.538276 CAGTCATCGAAAATTGCCGC 58.462 50.000 0.00 0.00 0.00 6.53
1103 1111 1.131126 AGCAGTCATCGAAAATTGCCG 59.869 47.619 12.31 0.00 32.21 5.69
1104 1112 2.927553 AGCAGTCATCGAAAATTGCC 57.072 45.000 12.31 0.00 32.21 4.52
1105 1113 3.174375 GGAAGCAGTCATCGAAAATTGC 58.826 45.455 9.09 9.09 0.00 3.56
1106 1114 4.083110 AGTGGAAGCAGTCATCGAAAATTG 60.083 41.667 0.00 0.00 0.00 2.32
1107 1115 4.074970 AGTGGAAGCAGTCATCGAAAATT 58.925 39.130 0.00 0.00 0.00 1.82
1108 1116 3.679389 AGTGGAAGCAGTCATCGAAAAT 58.321 40.909 0.00 0.00 0.00 1.82
1109 1117 3.126001 AGTGGAAGCAGTCATCGAAAA 57.874 42.857 0.00 0.00 0.00 2.29
1110 1118 2.839486 AGTGGAAGCAGTCATCGAAA 57.161 45.000 0.00 0.00 0.00 3.46
1111 1119 2.415491 CGTAGTGGAAGCAGTCATCGAA 60.415 50.000 0.00 0.00 0.00 3.71
1112 1120 1.132453 CGTAGTGGAAGCAGTCATCGA 59.868 52.381 0.00 0.00 0.00 3.59
1113 1121 1.550065 CGTAGTGGAAGCAGTCATCG 58.450 55.000 0.00 0.00 0.00 3.84
1114 1122 1.281899 GCGTAGTGGAAGCAGTCATC 58.718 55.000 0.00 0.00 32.03 2.92
1115 1123 0.608130 TGCGTAGTGGAAGCAGTCAT 59.392 50.000 0.00 0.00 37.65 3.06
1116 1124 0.608130 ATGCGTAGTGGAAGCAGTCA 59.392 50.000 0.00 0.00 46.09 3.41
1117 1125 1.002366 CATGCGTAGTGGAAGCAGTC 58.998 55.000 0.00 0.00 46.09 3.51
1118 1126 0.321671 ACATGCGTAGTGGAAGCAGT 59.678 50.000 0.00 0.00 46.09 4.40
1119 1127 0.723414 CACATGCGTAGTGGAAGCAG 59.277 55.000 0.00 0.00 46.09 4.24
1120 1128 0.320050 TCACATGCGTAGTGGAAGCA 59.680 50.000 0.00 0.00 46.96 3.91
1121 1129 1.656652 ATCACATGCGTAGTGGAAGC 58.343 50.000 0.00 0.00 37.58 3.86
1122 1130 4.685169 AAAATCACATGCGTAGTGGAAG 57.315 40.909 0.00 0.00 37.58 3.46
1123 1131 5.877564 TGATAAAATCACATGCGTAGTGGAA 59.122 36.000 0.00 0.00 37.58 3.53
1124 1132 5.423886 TGATAAAATCACATGCGTAGTGGA 58.576 37.500 0.00 0.00 37.58 4.02
1125 1133 5.733226 TGATAAAATCACATGCGTAGTGG 57.267 39.130 0.00 0.00 37.58 4.00
1126 1134 6.847792 GTCATGATAAAATCACATGCGTAGTG 59.152 38.462 0.00 3.05 43.01 2.74
1127 1135 6.763135 AGTCATGATAAAATCACATGCGTAGT 59.237 34.615 0.00 0.00 43.01 2.73
1128 1136 7.182361 AGTCATGATAAAATCACATGCGTAG 57.818 36.000 0.00 0.00 43.01 3.51
1129 1137 8.141268 TCTAGTCATGATAAAATCACATGCGTA 58.859 33.333 0.00 0.00 43.01 4.42
1130 1138 6.986231 TCTAGTCATGATAAAATCACATGCGT 59.014 34.615 0.00 0.00 43.01 5.24
1131 1139 7.412137 TCTAGTCATGATAAAATCACATGCG 57.588 36.000 0.00 0.00 43.01 4.73
1132 1140 9.823098 GAATCTAGTCATGATAAAATCACATGC 57.177 33.333 0.00 0.00 43.01 4.06
1134 1142 9.987272 TCGAATCTAGTCATGATAAAATCACAT 57.013 29.630 0.00 0.00 43.01 3.21
1135 1143 9.816354 TTCGAATCTAGTCATGATAAAATCACA 57.184 29.630 0.00 0.00 43.01 3.58
1137 1145 9.816354 TGTTCGAATCTAGTCATGATAAAATCA 57.184 29.630 0.00 0.00 44.55 2.57
1141 1149 9.599866 ACAATGTTCGAATCTAGTCATGATAAA 57.400 29.630 0.00 0.00 0.00 1.40
1144 1152 9.770097 ATTACAATGTTCGAATCTAGTCATGAT 57.230 29.630 0.00 0.00 0.00 2.45
1148 1156 9.952188 CTCTATTACAATGTTCGAATCTAGTCA 57.048 33.333 0.00 0.00 0.00 3.41
1151 1159 9.619316 CCTCTCTATTACAATGTTCGAATCTAG 57.381 37.037 0.00 0.00 0.00 2.43
1152 1160 8.082852 GCCTCTCTATTACAATGTTCGAATCTA 58.917 37.037 0.00 0.00 0.00 1.98
1153 1161 6.926272 GCCTCTCTATTACAATGTTCGAATCT 59.074 38.462 0.00 0.00 0.00 2.40
1154 1162 6.701841 TGCCTCTCTATTACAATGTTCGAATC 59.298 38.462 0.00 0.00 0.00 2.52
1155 1163 6.582636 TGCCTCTCTATTACAATGTTCGAAT 58.417 36.000 0.00 0.00 0.00 3.34
1156 1164 5.972935 TGCCTCTCTATTACAATGTTCGAA 58.027 37.500 0.00 0.00 0.00 3.71
1157 1165 5.592104 TGCCTCTCTATTACAATGTTCGA 57.408 39.130 0.00 0.00 0.00 3.71
1158 1166 6.662414 TTTGCCTCTCTATTACAATGTTCG 57.338 37.500 0.00 0.00 0.00 3.95
1159 1167 9.547753 TCTATTTGCCTCTCTATTACAATGTTC 57.452 33.333 0.00 0.00 0.00 3.18
1160 1168 9.553064 CTCTATTTGCCTCTCTATTACAATGTT 57.447 33.333 0.00 0.00 0.00 2.71
1161 1169 8.709308 ACTCTATTTGCCTCTCTATTACAATGT 58.291 33.333 0.00 0.00 0.00 2.71
1164 1172 8.361139 GCTACTCTATTTGCCTCTCTATTACAA 58.639 37.037 0.00 0.00 0.00 2.41
1165 1173 7.505923 TGCTACTCTATTTGCCTCTCTATTACA 59.494 37.037 0.00 0.00 0.00 2.41
1166 1174 7.810759 GTGCTACTCTATTTGCCTCTCTATTAC 59.189 40.741 0.00 0.00 0.00 1.89
1167 1175 7.505923 TGTGCTACTCTATTTGCCTCTCTATTA 59.494 37.037 0.00 0.00 0.00 0.98
1168 1176 6.325028 TGTGCTACTCTATTTGCCTCTCTATT 59.675 38.462 0.00 0.00 0.00 1.73
1169 1177 5.835819 TGTGCTACTCTATTTGCCTCTCTAT 59.164 40.000 0.00 0.00 0.00 1.98
1170 1178 5.201243 TGTGCTACTCTATTTGCCTCTCTA 58.799 41.667 0.00 0.00 0.00 2.43
1171 1179 4.026744 TGTGCTACTCTATTTGCCTCTCT 58.973 43.478 0.00 0.00 0.00 3.10
1172 1180 4.392921 TGTGCTACTCTATTTGCCTCTC 57.607 45.455 0.00 0.00 0.00 3.20
1173 1181 4.406972 TCATGTGCTACTCTATTTGCCTCT 59.593 41.667 0.00 0.00 0.00 3.69
1174 1182 4.697514 TCATGTGCTACTCTATTTGCCTC 58.302 43.478 0.00 0.00 0.00 4.70
1175 1183 4.760530 TCATGTGCTACTCTATTTGCCT 57.239 40.909 0.00 0.00 0.00 4.75
1176 1184 4.878397 AGTTCATGTGCTACTCTATTTGCC 59.122 41.667 0.00 0.00 0.00 4.52
1177 1185 6.253746 CAAGTTCATGTGCTACTCTATTTGC 58.746 40.000 0.00 0.00 0.00 3.68
1178 1186 6.253746 GCAAGTTCATGTGCTACTCTATTTG 58.746 40.000 0.00 0.00 37.78 2.32
1179 1187 6.428385 GCAAGTTCATGTGCTACTCTATTT 57.572 37.500 0.00 0.00 37.78 1.40
1204 1212 9.950496 TGAAGTTGAAGAAAATCTAGCTAATCT 57.050 29.630 0.00 0.00 0.00 2.40
1206 1214 9.950496 TCTGAAGTTGAAGAAAATCTAGCTAAT 57.050 29.630 0.00 0.00 0.00 1.73
1207 1215 9.950496 ATCTGAAGTTGAAGAAAATCTAGCTAA 57.050 29.630 0.00 0.00 0.00 3.09
1208 1216 9.950496 AATCTGAAGTTGAAGAAAATCTAGCTA 57.050 29.630 0.00 0.00 0.00 3.32
1209 1217 8.728833 CAATCTGAAGTTGAAGAAAATCTAGCT 58.271 33.333 0.00 0.00 0.00 3.32
1210 1218 7.967303 CCAATCTGAAGTTGAAGAAAATCTAGC 59.033 37.037 0.00 0.00 0.00 3.42
1211 1219 9.007901 ACCAATCTGAAGTTGAAGAAAATCTAG 57.992 33.333 0.00 0.00 0.00 2.43
1212 1220 8.924511 ACCAATCTGAAGTTGAAGAAAATCTA 57.075 30.769 0.00 0.00 0.00 1.98
1213 1221 7.830099 ACCAATCTGAAGTTGAAGAAAATCT 57.170 32.000 0.00 0.00 0.00 2.40
1214 1222 8.758715 CAAACCAATCTGAAGTTGAAGAAAATC 58.241 33.333 0.00 0.00 0.00 2.17
1215 1223 8.477256 TCAAACCAATCTGAAGTTGAAGAAAAT 58.523 29.630 0.00 0.00 0.00 1.82
1216 1224 7.835822 TCAAACCAATCTGAAGTTGAAGAAAA 58.164 30.769 0.00 0.00 0.00 2.29
1217 1225 7.403312 TCAAACCAATCTGAAGTTGAAGAAA 57.597 32.000 0.00 0.00 0.00 2.52
1218 1226 6.039717 CCTCAAACCAATCTGAAGTTGAAGAA 59.960 38.462 0.00 0.00 0.00 2.52
1219 1227 5.532406 CCTCAAACCAATCTGAAGTTGAAGA 59.468 40.000 0.00 0.00 0.00 2.87
1220 1228 5.532406 TCCTCAAACCAATCTGAAGTTGAAG 59.468 40.000 0.00 0.00 0.00 3.02
1221 1229 5.445069 TCCTCAAACCAATCTGAAGTTGAA 58.555 37.500 0.00 0.00 0.00 2.69
1222 1230 5.047566 TCCTCAAACCAATCTGAAGTTGA 57.952 39.130 0.00 0.00 0.00 3.18
1223 1231 4.320788 GCTCCTCAAACCAATCTGAAGTTG 60.321 45.833 0.00 0.00 0.00 3.16
1224 1232 3.823304 GCTCCTCAAACCAATCTGAAGTT 59.177 43.478 0.00 0.00 0.00 2.66
1225 1233 3.416156 GCTCCTCAAACCAATCTGAAGT 58.584 45.455 0.00 0.00 0.00 3.01
1226 1234 2.751806 GGCTCCTCAAACCAATCTGAAG 59.248 50.000 0.00 0.00 0.00 3.02
1227 1235 2.376518 AGGCTCCTCAAACCAATCTGAA 59.623 45.455 0.00 0.00 0.00 3.02
1228 1236 1.988107 AGGCTCCTCAAACCAATCTGA 59.012 47.619 0.00 0.00 0.00 3.27
1229 1237 2.503895 AGGCTCCTCAAACCAATCTG 57.496 50.000 0.00 0.00 0.00 2.90
1230 1238 3.782523 TGATAGGCTCCTCAAACCAATCT 59.217 43.478 0.00 0.00 0.00 2.40
1231 1239 4.156455 TGATAGGCTCCTCAAACCAATC 57.844 45.455 0.00 0.00 0.00 2.67
1232 1240 4.591321 TTGATAGGCTCCTCAAACCAAT 57.409 40.909 9.31 0.00 0.00 3.16
1233 1241 4.018506 TCATTGATAGGCTCCTCAAACCAA 60.019 41.667 14.20 0.00 35.20 3.67
1234 1242 3.523157 TCATTGATAGGCTCCTCAAACCA 59.477 43.478 14.20 2.17 35.20 3.67
1235 1243 4.156455 TCATTGATAGGCTCCTCAAACC 57.844 45.455 14.20 0.00 35.20 3.27
1236 1244 6.705863 ATTTCATTGATAGGCTCCTCAAAC 57.294 37.500 14.20 0.00 35.20 2.93
1237 1245 6.664816 ACAATTTCATTGATAGGCTCCTCAAA 59.335 34.615 14.20 1.80 42.83 2.69
1238 1246 6.189859 ACAATTTCATTGATAGGCTCCTCAA 58.810 36.000 12.99 12.99 42.83 3.02
1239 1247 5.759059 ACAATTTCATTGATAGGCTCCTCA 58.241 37.500 3.47 0.00 42.83 3.86
1240 1248 6.995091 AGTACAATTTCATTGATAGGCTCCTC 59.005 38.462 3.47 0.00 42.83 3.71
1241 1249 6.904626 AGTACAATTTCATTGATAGGCTCCT 58.095 36.000 3.47 0.00 42.83 3.69
1242 1250 6.767902 TGAGTACAATTTCATTGATAGGCTCC 59.232 38.462 3.47 0.00 42.83 4.70
1243 1251 7.792374 TGAGTACAATTTCATTGATAGGCTC 57.208 36.000 3.47 4.40 42.83 4.70
1244 1252 7.446625 GGATGAGTACAATTTCATTGATAGGCT 59.553 37.037 3.47 0.00 42.83 4.58
1245 1253 7.446625 AGGATGAGTACAATTTCATTGATAGGC 59.553 37.037 3.47 0.00 42.83 3.93
1246 1254 8.915057 AGGATGAGTACAATTTCATTGATAGG 57.085 34.615 3.47 0.00 42.83 2.57
1247 1255 9.551734 TGAGGATGAGTACAATTTCATTGATAG 57.448 33.333 3.47 0.00 42.83 2.08
1248 1256 9.330063 GTGAGGATGAGTACAATTTCATTGATA 57.670 33.333 3.47 0.00 42.83 2.15
1249 1257 7.830697 TGTGAGGATGAGTACAATTTCATTGAT 59.169 33.333 3.47 0.00 42.83 2.57
1250 1258 7.167535 TGTGAGGATGAGTACAATTTCATTGA 58.832 34.615 3.47 0.00 42.83 2.57
1251 1259 7.381766 TGTGAGGATGAGTACAATTTCATTG 57.618 36.000 0.00 0.00 45.59 2.82
1252 1260 8.299570 GTTTGTGAGGATGAGTACAATTTCATT 58.700 33.333 0.00 0.00 34.33 2.57
1253 1261 7.361201 CGTTTGTGAGGATGAGTACAATTTCAT 60.361 37.037 0.00 0.00 36.77 2.57
1254 1262 6.073276 CGTTTGTGAGGATGAGTACAATTTCA 60.073 38.462 0.00 0.00 33.56 2.69
1255 1263 6.147164 TCGTTTGTGAGGATGAGTACAATTTC 59.853 38.462 0.00 0.00 33.56 2.17
1256 1264 5.995282 TCGTTTGTGAGGATGAGTACAATTT 59.005 36.000 0.00 0.00 33.56 1.82
1257 1265 5.547465 TCGTTTGTGAGGATGAGTACAATT 58.453 37.500 0.00 0.00 33.56 2.32
1258 1266 5.147330 TCGTTTGTGAGGATGAGTACAAT 57.853 39.130 0.00 0.00 33.56 2.71
1259 1267 4.594123 TCGTTTGTGAGGATGAGTACAA 57.406 40.909 0.00 0.00 0.00 2.41
1260 1268 4.801330 ATCGTTTGTGAGGATGAGTACA 57.199 40.909 0.00 0.00 31.92 2.90
1267 1275 4.894784 ACAAGTACATCGTTTGTGAGGAT 58.105 39.130 0.00 0.00 39.48 3.24
1268 1276 4.330944 ACAAGTACATCGTTTGTGAGGA 57.669 40.909 0.00 0.00 39.48 3.71
1269 1277 6.721571 ATAACAAGTACATCGTTTGTGAGG 57.278 37.500 0.00 0.00 39.48 3.86
1270 1278 8.495949 AGAAATAACAAGTACATCGTTTGTGAG 58.504 33.333 0.00 0.00 39.48 3.51
1271 1279 8.373048 AGAAATAACAAGTACATCGTTTGTGA 57.627 30.769 0.00 0.00 39.48 3.58
1335 1343 7.016661 ACCAGACAGGAGAAGAAGATTTCTTAA 59.983 37.037 4.19 0.00 44.84 1.85
1336 1344 6.498651 ACCAGACAGGAGAAGAAGATTTCTTA 59.501 38.462 4.19 0.00 44.84 2.10
1361 1369 2.452505 GCTTGTGGCCAAGGGTTATAA 58.547 47.619 7.24 0.00 46.72 0.98
1398 1406 3.710165 ACCTTAGGCCTATGGTACTGTTC 59.290 47.826 37.08 0.00 40.49 3.18
1410 1418 3.117284 TGTTCAAAAAGGACCTTAGGCCT 60.117 43.478 11.78 11.78 32.23 5.19
1419 1428 4.496840 CGTAAGTGGGTGTTCAAAAAGGAC 60.497 45.833 0.00 0.00 0.00 3.85
1421 1430 3.959943 CGTAAGTGGGTGTTCAAAAAGG 58.040 45.455 0.00 0.00 0.00 3.11
1472 1481 1.351017 ACAGGACATGGGAAATCACGT 59.649 47.619 0.00 0.00 0.00 4.49
1473 1482 2.113860 ACAGGACATGGGAAATCACG 57.886 50.000 0.00 0.00 0.00 4.35
1490 1499 1.707989 TGGGTTCCATCTTGGCTAACA 59.292 47.619 0.00 0.00 37.47 2.41
1507 1516 1.212688 TGTGGTCCATAGCAAGATGGG 59.787 52.381 11.21 0.00 45.67 4.00
1532 1541 1.227380 CCGGATGCTGACTACTGGC 60.227 63.158 0.00 0.00 0.00 4.85
1551 1560 3.396560 CATCTCGGAAGCTTATGCATCA 58.603 45.455 0.19 0.00 42.74 3.07
1566 1575 1.993370 GACACTTTCGGTTCCATCTCG 59.007 52.381 0.00 0.00 0.00 4.04
1579 1588 7.011576 TGTGTACATTGTGAATAACGACACTTT 59.988 33.333 13.41 0.00 36.49 2.66
1580 1589 6.480651 TGTGTACATTGTGAATAACGACACTT 59.519 34.615 13.41 0.00 36.49 3.16
1587 1596 9.341899 GATTTCCTTGTGTACATTGTGAATAAC 57.658 33.333 0.00 0.00 0.00 1.89
1589 1598 8.628630 TGATTTCCTTGTGTACATTGTGAATA 57.371 30.769 0.00 0.00 0.00 1.75
1592 1601 6.714356 TGATGATTTCCTTGTGTACATTGTGA 59.286 34.615 0.00 0.00 0.00 3.58
1596 1605 6.009589 TGGTGATGATTTCCTTGTGTACATT 58.990 36.000 0.00 0.00 0.00 2.71
1598 1607 4.979335 TGGTGATGATTTCCTTGTGTACA 58.021 39.130 0.00 0.00 0.00 2.90
1632 1642 4.532126 TGTTTGGAGCAAGAGATAGAGGAA 59.468 41.667 0.00 0.00 0.00 3.36
1725 1735 4.405358 GGAATCTGATGAGACTCCTGAACT 59.595 45.833 2.09 0.00 40.85 3.01
1803 1814 7.450124 GGTACGATCATGGAGTCTAAAGATA 57.550 40.000 0.00 0.00 0.00 1.98
1872 1883 0.602562 TGCAAAGCATAGTGTTGGCC 59.397 50.000 0.00 0.00 31.71 5.36
1888 1899 1.664873 CGTTTTTCTGGGCCATGCA 59.335 52.632 6.72 0.00 0.00 3.96
1893 1904 1.285950 GACTGCGTTTTTCTGGGCC 59.714 57.895 0.00 0.00 0.00 5.80
1897 1908 3.997021 AGACTATGGACTGCGTTTTTCTG 59.003 43.478 0.00 0.00 0.00 3.02
1944 1955 3.670055 GGCGAAAGTCAATGTGTCAATTG 59.330 43.478 0.00 0.00 38.63 2.32
1945 1956 3.317711 TGGCGAAAGTCAATGTGTCAATT 59.682 39.130 0.00 0.00 46.60 2.32
1948 1959 1.960417 TGGCGAAAGTCAATGTGTCA 58.040 45.000 0.00 0.00 46.60 3.58
1972 1983 1.597663 GTCTTACTTGCGCACTTGTGT 59.402 47.619 11.12 7.00 0.00 3.72
1974 1985 1.867233 CTGTCTTACTTGCGCACTTGT 59.133 47.619 11.12 12.49 0.00 3.16
1992 2004 6.693315 TGGGAAAAGAAAAGAACTACACTG 57.307 37.500 0.00 0.00 0.00 3.66
2025 2037 4.515944 ACGAAGGATAATGAGACTACTCCG 59.484 45.833 0.00 0.00 41.99 4.63
2046 2058 2.559668 TGTCCTGAGTAAAGTACCCACG 59.440 50.000 0.00 0.00 0.00 4.94
2052 2064 6.850752 TCATGTCATGTCCTGAGTAAAGTA 57.149 37.500 12.54 0.00 33.51 2.24
2112 2125 3.297830 CGCCATGTTAGATACATCGGA 57.702 47.619 0.00 0.00 45.71 4.55
2181 2194 1.203570 ACCTCCCTATTCACCCCAGTT 60.204 52.381 0.00 0.00 0.00 3.16
2209 2224 6.755206 TCTATGTGGAACCTGGTATTATTCG 58.245 40.000 0.00 0.00 34.36 3.34
2221 2236 8.956426 TGAGTTTGATTTATTCTATGTGGAACC 58.044 33.333 0.00 0.00 34.36 3.62
2269 2284 7.504924 AAATAAAACGAGTTTGGTCTGATCA 57.495 32.000 1.65 0.00 32.36 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.