Multiple sequence alignment - TraesCS4B01G057400
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4B01G057400 | chr4B | 100.000 | 5800 | 0 | 0 | 1 | 5800 | 47496810 | 47502609 | 0.000000e+00 | 10711.0 |
1 | TraesCS4B01G057400 | chr4B | 95.660 | 553 | 23 | 1 | 1 | 552 | 614117624 | 614117072 | 0.000000e+00 | 887.0 |
2 | TraesCS4B01G057400 | chr4D | 91.366 | 2386 | 104 | 32 | 2922 | 5260 | 32498596 | 32500926 | 0.000000e+00 | 3171.0 |
3 | TraesCS4B01G057400 | chr4D | 92.591 | 2038 | 97 | 21 | 849 | 2874 | 32496597 | 32498592 | 0.000000e+00 | 2878.0 |
4 | TraesCS4B01G057400 | chr4D | 90.076 | 393 | 15 | 10 | 5297 | 5680 | 32501072 | 32501449 | 6.750000e-134 | 488.0 |
5 | TraesCS4B01G057400 | chr4D | 89.326 | 178 | 15 | 2 | 552 | 729 | 32496299 | 32496472 | 2.720000e-53 | 220.0 |
6 | TraesCS4B01G057400 | chr4D | 84.615 | 143 | 14 | 4 | 1598 | 1735 | 32497233 | 32497372 | 1.010000e-27 | 135.0 |
7 | TraesCS4B01G057400 | chr4D | 98.485 | 66 | 1 | 0 | 771 | 836 | 32496486 | 32496551 | 3.670000e-22 | 117.0 |
8 | TraesCS4B01G057400 | chr4A | 89.269 | 2078 | 134 | 39 | 849 | 2880 | 569883768 | 569881734 | 0.000000e+00 | 2519.0 |
9 | TraesCS4B01G057400 | chr4A | 88.566 | 1137 | 59 | 30 | 2922 | 4008 | 569881736 | 569880621 | 0.000000e+00 | 1314.0 |
10 | TraesCS4B01G057400 | chr4A | 88.156 | 667 | 50 | 8 | 4139 | 4803 | 569880608 | 569879969 | 0.000000e+00 | 767.0 |
11 | TraesCS4B01G057400 | chr4A | 81.720 | 465 | 27 | 24 | 5297 | 5734 | 569879394 | 569878961 | 9.310000e-88 | 335.0 |
12 | TraesCS4B01G057400 | chr4A | 86.869 | 198 | 7 | 9 | 4950 | 5141 | 569879750 | 569879566 | 2.740000e-48 | 204.0 |
13 | TraesCS4B01G057400 | chr4A | 98.485 | 66 | 1 | 0 | 771 | 836 | 569883879 | 569883814 | 3.670000e-22 | 117.0 |
14 | TraesCS4B01G057400 | chr4A | 100.000 | 46 | 0 | 0 | 5256 | 5301 | 569879511 | 569879466 | 1.040000e-12 | 86.1 |
15 | TraesCS4B01G057400 | chr3B | 95.082 | 549 | 25 | 2 | 1 | 548 | 592298440 | 592298987 | 0.000000e+00 | 863.0 |
16 | TraesCS4B01G057400 | chr3B | 95.082 | 549 | 26 | 1 | 1 | 548 | 715068489 | 715069037 | 0.000000e+00 | 863.0 |
17 | TraesCS4B01G057400 | chr6B | 94.900 | 549 | 26 | 2 | 1 | 548 | 507913553 | 507914100 | 0.000000e+00 | 857.0 |
18 | TraesCS4B01G057400 | chr2B | 93.695 | 571 | 33 | 3 | 1 | 569 | 148863151 | 148863720 | 0.000000e+00 | 852.0 |
19 | TraesCS4B01G057400 | chr2B | 100.000 | 44 | 0 | 0 | 2881 | 2924 | 606797392 | 606797435 | 1.340000e-11 | 82.4 |
20 | TraesCS4B01G057400 | chr7B | 94.555 | 551 | 26 | 3 | 1 | 548 | 116477680 | 116478229 | 0.000000e+00 | 848.0 |
21 | TraesCS4B01G057400 | chr7B | 94.224 | 554 | 28 | 3 | 1 | 552 | 496876674 | 496876123 | 0.000000e+00 | 843.0 |
22 | TraesCS4B01G057400 | chr7B | 78.571 | 350 | 57 | 15 | 3013 | 3346 | 125856934 | 125856587 | 1.270000e-51 | 215.0 |
23 | TraesCS4B01G057400 | chr7B | 79.934 | 304 | 46 | 11 | 2367 | 2658 | 713567974 | 713568274 | 5.890000e-50 | 209.0 |
24 | TraesCS4B01G057400 | chr7B | 78.000 | 350 | 57 | 17 | 3014 | 3346 | 713568585 | 713568931 | 9.850000e-48 | 202.0 |
25 | TraesCS4B01G057400 | chr5B | 94.536 | 549 | 29 | 1 | 1 | 548 | 655087345 | 655086797 | 0.000000e+00 | 846.0 |
26 | TraesCS4B01G057400 | chr5B | 94.516 | 547 | 28 | 2 | 2 | 547 | 378524720 | 378524175 | 0.000000e+00 | 843.0 |
27 | TraesCS4B01G057400 | chr5B | 100.000 | 46 | 0 | 0 | 2879 | 2924 | 429041473 | 429041518 | 1.040000e-12 | 86.1 |
28 | TraesCS4B01G057400 | chr7D | 79.032 | 992 | 127 | 39 | 3013 | 3945 | 411026804 | 411025835 | 6.430000e-169 | 604.0 |
29 | TraesCS4B01G057400 | chr7D | 83.609 | 604 | 79 | 16 | 2137 | 2731 | 411027672 | 411027080 | 3.060000e-152 | 549.0 |
30 | TraesCS4B01G057400 | chr7A | 79.236 | 968 | 120 | 47 | 3026 | 3945 | 470887834 | 470888768 | 2.990000e-167 | 599.0 |
31 | TraesCS4B01G057400 | chr7A | 83.544 | 632 | 85 | 14 | 2110 | 2731 | 470886924 | 470887546 | 1.810000e-159 | 573.0 |
32 | TraesCS4B01G057400 | chr7A | 79.412 | 374 | 52 | 18 | 2367 | 2726 | 628917262 | 628917624 | 2.090000e-59 | 241.0 |
33 | TraesCS4B01G057400 | chr7A | 78.736 | 348 | 55 | 15 | 3013 | 3343 | 628917901 | 628918246 | 1.270000e-51 | 215.0 |
34 | TraesCS4B01G057400 | chr5D | 79.625 | 373 | 59 | 12 | 2367 | 2726 | 297158346 | 297158714 | 9.650000e-63 | 252.0 |
35 | TraesCS4B01G057400 | chr5D | 78.754 | 353 | 53 | 18 | 3013 | 3346 | 297158986 | 297159335 | 3.520000e-52 | 217.0 |
36 | TraesCS4B01G057400 | chr2D | 79.625 | 373 | 59 | 13 | 2367 | 2726 | 603592992 | 603592624 | 9.650000e-63 | 252.0 |
37 | TraesCS4B01G057400 | chr5A | 79.143 | 350 | 55 | 15 | 3013 | 3346 | 534808604 | 534808951 | 5.850000e-55 | 226.0 |
38 | TraesCS4B01G057400 | chr5A | 77.867 | 375 | 62 | 15 | 2367 | 2726 | 534807964 | 534808332 | 4.550000e-51 | 213.0 |
39 | TraesCS4B01G057400 | chrUn | 100.000 | 46 | 0 | 0 | 2879 | 2924 | 443328720 | 443328675 | 1.040000e-12 | 86.1 |
40 | TraesCS4B01G057400 | chrUn | 97.826 | 46 | 1 | 0 | 2879 | 2924 | 418329115 | 418329070 | 4.820000e-11 | 80.5 |
41 | TraesCS4B01G057400 | chr3D | 100.000 | 46 | 0 | 0 | 2879 | 2924 | 589247683 | 589247728 | 1.040000e-12 | 86.1 |
42 | TraesCS4B01G057400 | chr1D | 100.000 | 46 | 0 | 0 | 2879 | 2924 | 177260712 | 177260757 | 1.040000e-12 | 86.1 |
43 | TraesCS4B01G057400 | chr1A | 100.000 | 46 | 0 | 0 | 2879 | 2924 | 371931581 | 371931626 | 1.040000e-12 | 86.1 |
44 | TraesCS4B01G057400 | chr1A | 97.826 | 46 | 1 | 0 | 2879 | 2924 | 136854998 | 136854953 | 4.820000e-11 | 80.5 |
45 | TraesCS4B01G057400 | chr6D | 97.826 | 46 | 1 | 0 | 2879 | 2924 | 322237252 | 322237297 | 4.820000e-11 | 80.5 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4B01G057400 | chr4B | 47496810 | 47502609 | 5799 | False | 10711.000000 | 10711 | 100.000000 | 1 | 5800 | 1 | chr4B.!!$F1 | 5799 |
1 | TraesCS4B01G057400 | chr4B | 614117072 | 614117624 | 552 | True | 887.000000 | 887 | 95.660000 | 1 | 552 | 1 | chr4B.!!$R1 | 551 |
2 | TraesCS4B01G057400 | chr4D | 32496299 | 32501449 | 5150 | False | 1168.166667 | 3171 | 91.076500 | 552 | 5680 | 6 | chr4D.!!$F1 | 5128 |
3 | TraesCS4B01G057400 | chr4A | 569878961 | 569883879 | 4918 | True | 763.157143 | 2519 | 90.437857 | 771 | 5734 | 7 | chr4A.!!$R1 | 4963 |
4 | TraesCS4B01G057400 | chr3B | 592298440 | 592298987 | 547 | False | 863.000000 | 863 | 95.082000 | 1 | 548 | 1 | chr3B.!!$F1 | 547 |
5 | TraesCS4B01G057400 | chr3B | 715068489 | 715069037 | 548 | False | 863.000000 | 863 | 95.082000 | 1 | 548 | 1 | chr3B.!!$F2 | 547 |
6 | TraesCS4B01G057400 | chr6B | 507913553 | 507914100 | 547 | False | 857.000000 | 857 | 94.900000 | 1 | 548 | 1 | chr6B.!!$F1 | 547 |
7 | TraesCS4B01G057400 | chr2B | 148863151 | 148863720 | 569 | False | 852.000000 | 852 | 93.695000 | 1 | 569 | 1 | chr2B.!!$F1 | 568 |
8 | TraesCS4B01G057400 | chr7B | 116477680 | 116478229 | 549 | False | 848.000000 | 848 | 94.555000 | 1 | 548 | 1 | chr7B.!!$F1 | 547 |
9 | TraesCS4B01G057400 | chr7B | 496876123 | 496876674 | 551 | True | 843.000000 | 843 | 94.224000 | 1 | 552 | 1 | chr7B.!!$R2 | 551 |
10 | TraesCS4B01G057400 | chr7B | 713567974 | 713568931 | 957 | False | 205.500000 | 209 | 78.967000 | 2367 | 3346 | 2 | chr7B.!!$F2 | 979 |
11 | TraesCS4B01G057400 | chr5B | 655086797 | 655087345 | 548 | True | 846.000000 | 846 | 94.536000 | 1 | 548 | 1 | chr5B.!!$R2 | 547 |
12 | TraesCS4B01G057400 | chr5B | 378524175 | 378524720 | 545 | True | 843.000000 | 843 | 94.516000 | 2 | 547 | 1 | chr5B.!!$R1 | 545 |
13 | TraesCS4B01G057400 | chr7D | 411025835 | 411027672 | 1837 | True | 576.500000 | 604 | 81.320500 | 2137 | 3945 | 2 | chr7D.!!$R1 | 1808 |
14 | TraesCS4B01G057400 | chr7A | 470886924 | 470888768 | 1844 | False | 586.000000 | 599 | 81.390000 | 2110 | 3945 | 2 | chr7A.!!$F1 | 1835 |
15 | TraesCS4B01G057400 | chr7A | 628917262 | 628918246 | 984 | False | 228.000000 | 241 | 79.074000 | 2367 | 3343 | 2 | chr7A.!!$F2 | 976 |
16 | TraesCS4B01G057400 | chr5D | 297158346 | 297159335 | 989 | False | 234.500000 | 252 | 79.189500 | 2367 | 3346 | 2 | chr5D.!!$F1 | 979 |
17 | TraesCS4B01G057400 | chr5A | 534807964 | 534808951 | 987 | False | 219.500000 | 226 | 78.505000 | 2367 | 3346 | 2 | chr5A.!!$F1 | 979 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
703 | 709 | 0.107831 | AAGTTGCGACAGCCTACCAA | 59.892 | 50.0 | 6.90 | 0.00 | 44.33 | 3.67 | F |
708 | 714 | 0.177141 | GCGACAGCCTACCAATACCA | 59.823 | 55.0 | 0.00 | 0.00 | 37.42 | 3.25 | F |
747 | 753 | 0.436531 | GAGAGACGCTGCGTTTTCTG | 59.563 | 55.0 | 32.75 | 7.27 | 41.37 | 3.02 | F |
1294 | 1346 | 0.542702 | CCCCAAGTTCATGTGCCCTT | 60.543 | 55.0 | 0.00 | 0.00 | 0.00 | 3.95 | F |
2878 | 3033 | 0.034337 | AAGGAACACACGTGGCGTAT | 59.966 | 50.0 | 21.57 | 7.50 | 38.32 | 3.06 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2254 | 2379 | 0.248843 | GGAGCCTGAGGAAGTGTGAG | 59.751 | 60.000 | 0.65 | 0.0 | 0.00 | 3.51 | R |
2507 | 2636 | 3.436704 | CACCGATACAATGTTCTGCAGTT | 59.563 | 43.478 | 14.67 | 0.0 | 0.00 | 3.16 | R |
2551 | 2688 | 4.104086 | TCAGTTGGGATAACACCAGAGAT | 58.896 | 43.478 | 0.00 | 0.0 | 39.57 | 2.75 | R |
2894 | 3049 | 0.447801 | CGGAGCGTTTGGATTCTTGG | 59.552 | 55.000 | 0.00 | 0.0 | 0.00 | 3.61 | R |
4841 | 5155 | 0.030101 | GAGGTCTGATTCGAGGAGCG | 59.970 | 60.000 | 0.00 | 0.0 | 42.69 | 5.03 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
399 | 402 | 2.362717 | GGTGTCCGTTTCATCCCAAAAA | 59.637 | 45.455 | 0.00 | 0.00 | 0.00 | 1.94 |
414 | 417 | 0.173708 | AAAAACGGCGCAAACTTGGA | 59.826 | 45.000 | 10.83 | 0.00 | 0.00 | 3.53 |
441 | 444 | 2.027625 | GGGTCGAAAGCGGACACAG | 61.028 | 63.158 | 0.00 | 0.00 | 38.28 | 3.66 |
558 | 564 | 1.150536 | GTTGGCCTCACAACCTCCA | 59.849 | 57.895 | 3.32 | 0.00 | 43.72 | 3.86 |
603 | 609 | 2.772691 | GCTGTCGTACCTAGCGGCT | 61.773 | 63.158 | 7.98 | 7.98 | 34.76 | 5.52 |
607 | 613 | 0.950116 | GTCGTACCTAGCGGCTGTAT | 59.050 | 55.000 | 13.86 | 0.00 | 0.00 | 2.29 |
608 | 614 | 0.949397 | TCGTACCTAGCGGCTGTATG | 59.051 | 55.000 | 13.86 | 12.40 | 0.00 | 2.39 |
622 | 628 | 0.691413 | TGTATGGGCGTATGGGGTGA | 60.691 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
628 | 634 | 2.534019 | GCGTATGGGGTGATGCGTG | 61.534 | 63.158 | 0.00 | 0.00 | 34.34 | 5.34 |
630 | 636 | 0.742990 | CGTATGGGGTGATGCGTGTT | 60.743 | 55.000 | 0.00 | 0.00 | 0.00 | 3.32 |
631 | 637 | 1.459450 | GTATGGGGTGATGCGTGTTT | 58.541 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
632 | 638 | 1.132262 | GTATGGGGTGATGCGTGTTTG | 59.868 | 52.381 | 0.00 | 0.00 | 0.00 | 2.93 |
634 | 640 | 2.268076 | GGGGTGATGCGTGTTTGCT | 61.268 | 57.895 | 0.00 | 0.00 | 35.36 | 3.91 |
635 | 641 | 1.659794 | GGGTGATGCGTGTTTGCTT | 59.340 | 52.632 | 0.00 | 0.00 | 35.36 | 3.91 |
636 | 642 | 0.664166 | GGGTGATGCGTGTTTGCTTG | 60.664 | 55.000 | 0.00 | 0.00 | 35.36 | 4.01 |
644 | 650 | 3.218470 | TGTTTGCTTGCTGCCGCT | 61.218 | 55.556 | 11.42 | 0.00 | 42.00 | 5.52 |
699 | 705 | 3.966215 | GCAAGTTGCGACAGCCTA | 58.034 | 55.556 | 12.95 | 0.00 | 44.33 | 3.93 |
702 | 708 | 0.602638 | CAAGTTGCGACAGCCTACCA | 60.603 | 55.000 | 6.90 | 0.00 | 44.33 | 3.25 |
703 | 709 | 0.107831 | AAGTTGCGACAGCCTACCAA | 59.892 | 50.000 | 6.90 | 0.00 | 44.33 | 3.67 |
708 | 714 | 0.177141 | GCGACAGCCTACCAATACCA | 59.823 | 55.000 | 0.00 | 0.00 | 37.42 | 3.25 |
713 | 719 | 3.302161 | ACAGCCTACCAATACCATACGA | 58.698 | 45.455 | 0.00 | 0.00 | 0.00 | 3.43 |
736 | 742 | 1.269154 | GGATAAACCGAGGAGAGACGC | 60.269 | 57.143 | 0.00 | 0.00 | 0.00 | 5.19 |
738 | 744 | 0.809385 | TAAACCGAGGAGAGACGCTG | 59.191 | 55.000 | 0.00 | 0.00 | 0.00 | 5.18 |
741 | 747 | 3.805307 | CGAGGAGAGACGCTGCGT | 61.805 | 66.667 | 29.37 | 29.37 | 45.10 | 5.24 |
742 | 748 | 2.569134 | GAGGAGAGACGCTGCGTT | 59.431 | 61.111 | 29.54 | 18.20 | 41.37 | 4.84 |
743 | 749 | 1.080434 | GAGGAGAGACGCTGCGTTT | 60.080 | 57.895 | 29.54 | 24.07 | 41.37 | 3.60 |
744 | 750 | 0.667792 | GAGGAGAGACGCTGCGTTTT | 60.668 | 55.000 | 29.54 | 19.97 | 41.37 | 2.43 |
745 | 751 | 0.667792 | AGGAGAGACGCTGCGTTTTC | 60.668 | 55.000 | 29.54 | 26.17 | 41.37 | 2.29 |
746 | 752 | 0.667792 | GGAGAGACGCTGCGTTTTCT | 60.668 | 55.000 | 30.02 | 30.02 | 41.37 | 2.52 |
747 | 753 | 0.436531 | GAGAGACGCTGCGTTTTCTG | 59.563 | 55.000 | 32.75 | 7.27 | 41.37 | 3.02 |
748 | 754 | 1.154580 | GAGACGCTGCGTTTTCTGC | 60.155 | 57.895 | 29.54 | 14.89 | 41.37 | 4.26 |
752 | 758 | 2.631428 | GCTGCGTTTTCTGCGACA | 59.369 | 55.556 | 0.00 | 0.00 | 34.24 | 4.35 |
753 | 759 | 1.439365 | GCTGCGTTTTCTGCGACAG | 60.439 | 57.895 | 0.00 | 0.00 | 36.94 | 3.51 |
754 | 760 | 1.439365 | CTGCGTTTTCTGCGACAGC | 60.439 | 57.895 | 2.45 | 0.00 | 45.41 | 4.40 |
755 | 761 | 2.127232 | GCGTTTTCTGCGACAGCC | 60.127 | 61.111 | 2.45 | 0.00 | 44.33 | 4.85 |
756 | 762 | 2.556287 | CGTTTTCTGCGACAGCCC | 59.444 | 61.111 | 2.45 | 0.00 | 44.33 | 5.19 |
757 | 763 | 2.556287 | GTTTTCTGCGACAGCCCG | 59.444 | 61.111 | 2.45 | 0.00 | 44.33 | 6.13 |
758 | 764 | 2.110213 | TTTTCTGCGACAGCCCGT | 59.890 | 55.556 | 2.45 | 0.00 | 44.33 | 5.28 |
759 | 765 | 1.959226 | TTTTCTGCGACAGCCCGTC | 60.959 | 57.895 | 2.45 | 0.00 | 44.33 | 4.79 |
760 | 766 | 3.876589 | TTTCTGCGACAGCCCGTCC | 62.877 | 63.158 | 2.45 | 0.00 | 42.07 | 4.79 |
837 | 843 | 3.847602 | CTCCTGCTCCCGCTCCAG | 61.848 | 72.222 | 0.00 | 0.00 | 36.97 | 3.86 |
843 | 849 | 3.847602 | CTCCCGCTCCAGCTCCAG | 61.848 | 72.222 | 0.00 | 0.00 | 39.32 | 3.86 |
949 | 988 | 3.917760 | CGCCGGATCCCACCTCTC | 61.918 | 72.222 | 5.05 | 0.00 | 0.00 | 3.20 |
950 | 989 | 2.444895 | GCCGGATCCCACCTCTCT | 60.445 | 66.667 | 5.05 | 0.00 | 0.00 | 3.10 |
951 | 990 | 2.066999 | GCCGGATCCCACCTCTCTT | 61.067 | 63.158 | 5.05 | 0.00 | 0.00 | 2.85 |
1005 | 1044 | 4.547367 | GCGACCCCCGGAATGAGG | 62.547 | 72.222 | 0.73 | 0.00 | 39.04 | 3.86 |
1006 | 1045 | 3.081409 | CGACCCCCGGAATGAGGT | 61.081 | 66.667 | 0.73 | 0.59 | 34.57 | 3.85 |
1007 | 1046 | 1.759299 | CGACCCCCGGAATGAGGTA | 60.759 | 63.158 | 0.73 | 0.00 | 31.10 | 3.08 |
1067 | 1110 | 4.307432 | CCTTTATCTATCAATCACGCGGT | 58.693 | 43.478 | 12.47 | 0.00 | 0.00 | 5.68 |
1128 | 1171 | 7.449395 | ACATATGTGTATTTCCCATGGATTGAG | 59.551 | 37.037 | 15.22 | 0.00 | 36.63 | 3.02 |
1129 | 1172 | 4.535781 | TGTGTATTTCCCATGGATTGAGG | 58.464 | 43.478 | 15.22 | 0.00 | 0.00 | 3.86 |
1130 | 1173 | 4.229353 | TGTGTATTTCCCATGGATTGAGGA | 59.771 | 41.667 | 15.22 | 0.00 | 0.00 | 3.71 |
1131 | 1174 | 5.103558 | TGTGTATTTCCCATGGATTGAGGAT | 60.104 | 40.000 | 15.22 | 3.39 | 0.00 | 3.24 |
1132 | 1175 | 5.835280 | GTGTATTTCCCATGGATTGAGGATT | 59.165 | 40.000 | 15.22 | 0.00 | 0.00 | 3.01 |
1133 | 1176 | 6.324770 | GTGTATTTCCCATGGATTGAGGATTT | 59.675 | 38.462 | 15.22 | 0.00 | 0.00 | 2.17 |
1134 | 1177 | 5.881923 | ATTTCCCATGGATTGAGGATTTG | 57.118 | 39.130 | 15.22 | 0.00 | 0.00 | 2.32 |
1135 | 1178 | 4.606476 | TTCCCATGGATTGAGGATTTGA | 57.394 | 40.909 | 15.22 | 0.00 | 0.00 | 2.69 |
1149 | 1192 | 2.623239 | GGATTTGAGGGTAGGTTTGGGG | 60.623 | 54.545 | 0.00 | 0.00 | 0.00 | 4.96 |
1157 | 1204 | 0.614697 | GTAGGTTTGGGGCCTGCAAT | 60.615 | 55.000 | 0.84 | 0.00 | 38.39 | 3.56 |
1169 | 1216 | 5.016173 | GGGGCCTGCAATTTCATGTATATA | 58.984 | 41.667 | 0.84 | 0.00 | 0.00 | 0.86 |
1174 | 1221 | 7.972277 | GGCCTGCAATTTCATGTATATATTGAG | 59.028 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
1244 | 1291 | 4.749598 | CCTGCGCAATATGTCAGTATACAA | 59.250 | 41.667 | 13.05 | 0.00 | 32.02 | 2.41 |
1249 | 1296 | 7.855409 | TGCGCAATATGTCAGTATACAATTTTC | 59.145 | 33.333 | 8.16 | 0.00 | 32.02 | 2.29 |
1250 | 1297 | 8.070171 | GCGCAATATGTCAGTATACAATTTTCT | 58.930 | 33.333 | 0.30 | 0.00 | 32.02 | 2.52 |
1251 | 1298 | 9.373750 | CGCAATATGTCAGTATACAATTTTCTG | 57.626 | 33.333 | 5.50 | 0.00 | 32.02 | 3.02 |
1294 | 1346 | 0.542702 | CCCCAAGTTCATGTGCCCTT | 60.543 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
1321 | 1374 | 2.027653 | GCTATGAGTGATTAGGAGCCCC | 60.028 | 54.545 | 0.00 | 0.00 | 0.00 | 5.80 |
1325 | 1378 | 2.026262 | TGAGTGATTAGGAGCCCCAAAC | 60.026 | 50.000 | 0.00 | 0.00 | 33.88 | 2.93 |
1328 | 1381 | 1.339631 | TGATTAGGAGCCCCAAACGTG | 60.340 | 52.381 | 0.00 | 0.00 | 33.88 | 4.49 |
1381 | 1434 | 7.698506 | ATCTGAATCACAGTGATGTTTGAAT | 57.301 | 32.000 | 17.11 | 0.00 | 45.86 | 2.57 |
1470 | 1524 | 8.897752 | GCTCATCTCAACTCCTACATTTTAAAT | 58.102 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
1590 | 1707 | 5.582689 | AATGCTTATAGTTTTGCTCCACC | 57.417 | 39.130 | 0.00 | 0.00 | 0.00 | 4.61 |
1612 | 1731 | 5.296780 | ACCACGATGCATTTTGAAGTATAGG | 59.703 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1622 | 1741 | 8.725148 | GCATTTTGAAGTATAGGATGGACATAG | 58.275 | 37.037 | 0.00 | 0.00 | 0.00 | 2.23 |
1670 | 1790 | 6.358118 | TGCTTATAATTTTGCTCCACTACG | 57.642 | 37.500 | 0.00 | 0.00 | 0.00 | 3.51 |
1681 | 1801 | 2.420022 | GCTCCACTACGATGCATTTTGT | 59.580 | 45.455 | 0.00 | 2.90 | 0.00 | 2.83 |
1704 | 1829 | 8.319057 | TGTAGTATGGACATATGGAAACTCTT | 57.681 | 34.615 | 7.80 | 0.00 | 0.00 | 2.85 |
1768 | 1893 | 1.368641 | TCATACGCATGCTTGACCAC | 58.631 | 50.000 | 17.13 | 0.00 | 31.73 | 4.16 |
1804 | 1929 | 5.007332 | GGGACCTGCTGTTAAACATAATACG | 59.993 | 44.000 | 0.00 | 0.00 | 0.00 | 3.06 |
2085 | 2210 | 6.762661 | GTGTTATTTTGCAGGCATTTATGGAT | 59.237 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
2173 | 2298 | 6.129009 | GCACTGTGCTTTTGTCTCATATTTTG | 60.129 | 38.462 | 24.68 | 0.00 | 40.96 | 2.44 |
2224 | 2349 | 3.390135 | TGATGACGTTGACTTGGAAGAC | 58.610 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
2254 | 2379 | 4.203226 | CCTCAAAAGAAAGAGATAGGCCC | 58.797 | 47.826 | 0.00 | 0.00 | 33.74 | 5.80 |
2422 | 2547 | 3.009473 | ACCAGGTATATTGCTATGGCTGG | 59.991 | 47.826 | 1.68 | 0.00 | 39.59 | 4.85 |
2448 | 2573 | 8.019669 | GCCATATACTTCTTATGCAATCTTGTG | 58.980 | 37.037 | 0.00 | 0.00 | 0.00 | 3.33 |
2466 | 2595 | 6.586344 | TCTTGTGTTCCTTCTCATGGATATC | 58.414 | 40.000 | 0.00 | 0.00 | 33.09 | 1.63 |
2551 | 2688 | 1.338674 | CCATAGTTTCCGCACTGTCCA | 60.339 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
2658 | 2795 | 8.568676 | TGCTAATTACAAGCATGTTTAGGTAA | 57.431 | 30.769 | 12.86 | 7.39 | 44.78 | 2.85 |
2659 | 2796 | 9.015367 | TGCTAATTACAAGCATGTTTAGGTAAA | 57.985 | 29.630 | 12.86 | 0.00 | 44.78 | 2.01 |
2697 | 2835 | 9.649167 | AAATCATTTTGATCTGAGGAATGTTTC | 57.351 | 29.630 | 0.00 | 0.00 | 35.76 | 2.78 |
2698 | 2836 | 6.845302 | TCATTTTGATCTGAGGAATGTTTCG | 58.155 | 36.000 | 0.00 | 0.00 | 0.00 | 3.46 |
2870 | 3025 | 2.731968 | GCCATGCATAAAGGAACACACG | 60.732 | 50.000 | 0.00 | 0.00 | 0.00 | 4.49 |
2874 | 3029 | 1.401018 | GCATAAAGGAACACACGTGGC | 60.401 | 52.381 | 21.57 | 4.84 | 34.19 | 5.01 |
2875 | 3030 | 1.136085 | CATAAAGGAACACACGTGGCG | 60.136 | 52.381 | 21.57 | 13.07 | 34.19 | 5.69 |
2877 | 3032 | 0.179078 | AAAGGAACACACGTGGCGTA | 60.179 | 50.000 | 21.57 | 0.00 | 38.32 | 4.42 |
2878 | 3033 | 0.034337 | AAGGAACACACGTGGCGTAT | 59.966 | 50.000 | 21.57 | 7.50 | 38.32 | 3.06 |
2879 | 3034 | 0.889994 | AGGAACACACGTGGCGTATA | 59.110 | 50.000 | 21.57 | 0.00 | 38.32 | 1.47 |
2880 | 3035 | 1.273048 | AGGAACACACGTGGCGTATAA | 59.727 | 47.619 | 21.57 | 0.00 | 38.32 | 0.98 |
2881 | 3036 | 2.093869 | AGGAACACACGTGGCGTATAAT | 60.094 | 45.455 | 21.57 | 1.23 | 38.32 | 1.28 |
2882 | 3037 | 2.029970 | GGAACACACGTGGCGTATAATG | 59.970 | 50.000 | 21.57 | 8.73 | 38.32 | 1.90 |
2883 | 3038 | 2.658373 | ACACACGTGGCGTATAATGA | 57.342 | 45.000 | 21.57 | 0.00 | 38.32 | 2.57 |
2884 | 3039 | 2.264813 | ACACACGTGGCGTATAATGAC | 58.735 | 47.619 | 21.57 | 0.00 | 38.32 | 3.06 |
2885 | 3040 | 2.263945 | CACACGTGGCGTATAATGACA | 58.736 | 47.619 | 21.57 | 0.00 | 38.32 | 3.58 |
2886 | 3041 | 2.028763 | CACACGTGGCGTATAATGACAC | 59.971 | 50.000 | 21.57 | 2.72 | 39.75 | 3.67 |
2892 | 3047 | 5.246677 | GTGGCGTATAATGACACGATAAC | 57.753 | 43.478 | 0.00 | 0.00 | 40.56 | 1.89 |
2893 | 3048 | 4.980434 | GTGGCGTATAATGACACGATAACT | 59.020 | 41.667 | 0.00 | 0.00 | 40.56 | 2.24 |
2894 | 3049 | 5.116680 | GTGGCGTATAATGACACGATAACTC | 59.883 | 44.000 | 0.00 | 0.00 | 40.56 | 3.01 |
2895 | 3050 | 4.620184 | GGCGTATAATGACACGATAACTCC | 59.380 | 45.833 | 0.00 | 0.00 | 40.56 | 3.85 |
2896 | 3051 | 5.217393 | GCGTATAATGACACGATAACTCCA | 58.783 | 41.667 | 0.00 | 0.00 | 40.56 | 3.86 |
2897 | 3052 | 5.688621 | GCGTATAATGACACGATAACTCCAA | 59.311 | 40.000 | 0.00 | 0.00 | 40.56 | 3.53 |
2898 | 3053 | 6.129168 | GCGTATAATGACACGATAACTCCAAG | 60.129 | 42.308 | 0.00 | 0.00 | 40.56 | 3.61 |
2899 | 3054 | 7.136772 | CGTATAATGACACGATAACTCCAAGA | 58.863 | 38.462 | 0.00 | 0.00 | 40.56 | 3.02 |
2900 | 3055 | 7.646526 | CGTATAATGACACGATAACTCCAAGAA | 59.353 | 37.037 | 0.00 | 0.00 | 40.56 | 2.52 |
2901 | 3056 | 9.477484 | GTATAATGACACGATAACTCCAAGAAT | 57.523 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
2902 | 3057 | 6.910536 | AATGACACGATAACTCCAAGAATC | 57.089 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
2903 | 3058 | 4.755411 | TGACACGATAACTCCAAGAATCC | 58.245 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
2904 | 3059 | 4.221924 | TGACACGATAACTCCAAGAATCCA | 59.778 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
2905 | 3060 | 5.160607 | ACACGATAACTCCAAGAATCCAA | 57.839 | 39.130 | 0.00 | 0.00 | 0.00 | 3.53 |
2906 | 3061 | 5.556915 | ACACGATAACTCCAAGAATCCAAA | 58.443 | 37.500 | 0.00 | 0.00 | 0.00 | 3.28 |
2907 | 3062 | 5.411669 | ACACGATAACTCCAAGAATCCAAAC | 59.588 | 40.000 | 0.00 | 0.00 | 0.00 | 2.93 |
2908 | 3063 | 4.630069 | ACGATAACTCCAAGAATCCAAACG | 59.370 | 41.667 | 0.00 | 0.00 | 0.00 | 3.60 |
2909 | 3064 | 4.494199 | CGATAACTCCAAGAATCCAAACGC | 60.494 | 45.833 | 0.00 | 0.00 | 0.00 | 4.84 |
2910 | 3065 | 2.568623 | ACTCCAAGAATCCAAACGCT | 57.431 | 45.000 | 0.00 | 0.00 | 0.00 | 5.07 |
2911 | 3066 | 2.427506 | ACTCCAAGAATCCAAACGCTC | 58.572 | 47.619 | 0.00 | 0.00 | 0.00 | 5.03 |
2912 | 3067 | 1.740025 | CTCCAAGAATCCAAACGCTCC | 59.260 | 52.381 | 0.00 | 0.00 | 0.00 | 4.70 |
2913 | 3068 | 0.447801 | CCAAGAATCCAAACGCTCCG | 59.552 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
2914 | 3069 | 1.156736 | CAAGAATCCAAACGCTCCGT | 58.843 | 50.000 | 0.00 | 0.00 | 43.97 | 4.69 |
2945 | 3100 | 4.013050 | AGCTTGTTCCTCCTTTAATCAGC | 58.987 | 43.478 | 0.00 | 0.00 | 0.00 | 4.26 |
3034 | 3239 | 4.571580 | GGCTCTTTCTCTGATCATGTTCAG | 59.428 | 45.833 | 22.63 | 22.63 | 43.70 | 3.02 |
3041 | 3246 | 9.645059 | CTTTCTCTGATCATGTTCAGTTAGTTA | 57.355 | 33.333 | 25.78 | 10.62 | 43.02 | 2.24 |
3054 | 3259 | 7.813148 | TGTTCAGTTAGTTAGTTCAGACTATGC | 59.187 | 37.037 | 0.00 | 0.00 | 38.14 | 3.14 |
3277 | 3499 | 4.074970 | CCAATGTTCTTACTGCTTCTGGT | 58.925 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
3361 | 3597 | 8.437360 | TGGTATGTCATGAAGTTATGAATGTC | 57.563 | 34.615 | 0.00 | 0.00 | 38.69 | 3.06 |
3386 | 3622 | 3.451526 | GCAGGATTTGAATGCTTAAGGC | 58.548 | 45.455 | 4.29 | 0.00 | 34.64 | 4.35 |
3407 | 3644 | 5.475564 | AGGCGGCTTATTTTCTTTTCTGTTA | 59.524 | 36.000 | 5.25 | 0.00 | 0.00 | 2.41 |
3492 | 3734 | 9.289303 | CATGACTTAAATTAACACACTATTGGC | 57.711 | 33.333 | 0.00 | 0.00 | 0.00 | 4.52 |
3510 | 3752 | 2.193993 | GGCCCCTTAAAGACCTGACTA | 58.806 | 52.381 | 0.00 | 0.00 | 0.00 | 2.59 |
3512 | 3754 | 3.370633 | GGCCCCTTAAAGACCTGACTAAG | 60.371 | 52.174 | 0.00 | 0.00 | 0.00 | 2.18 |
3519 | 3761 | 6.071051 | CCTTAAAGACCTGACTAAGCTCTCTT | 60.071 | 42.308 | 0.00 | 0.00 | 36.35 | 2.85 |
3595 | 3837 | 0.681733 | AGTCGGCTATACATGGCAGG | 59.318 | 55.000 | 0.00 | 0.00 | 35.81 | 4.85 |
3643 | 3885 | 9.212641 | CATCATATTCGGTATTGTTCTTCTCAT | 57.787 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
3673 | 3915 | 7.493320 | CACTGAAAATTTACAATATGCAGCCAT | 59.507 | 33.333 | 0.00 | 0.00 | 35.44 | 4.40 |
3674 | 3916 | 7.707893 | ACTGAAAATTTACAATATGCAGCCATC | 59.292 | 33.333 | 0.00 | 0.00 | 32.85 | 3.51 |
3676 | 3918 | 8.259411 | TGAAAATTTACAATATGCAGCCATCTT | 58.741 | 29.630 | 0.00 | 0.00 | 32.85 | 2.40 |
3757 | 4028 | 9.915629 | CAGTTGTGAGGTACCTCTATATAAATC | 57.084 | 37.037 | 35.83 | 18.57 | 43.12 | 2.17 |
4018 | 4310 | 2.038557 | GAGCCTCCACCTCTGTAACAAA | 59.961 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
4103 | 4395 | 3.056607 | ACACCAACCTCAAATAATGCAGC | 60.057 | 43.478 | 0.00 | 0.00 | 0.00 | 5.25 |
4179 | 4471 | 6.715347 | ATAGGGTCAAATTTGTTATCTGCC | 57.285 | 37.500 | 17.47 | 9.28 | 0.00 | 4.85 |
4180 | 4472 | 3.769300 | AGGGTCAAATTTGTTATCTGCCC | 59.231 | 43.478 | 17.47 | 15.98 | 0.00 | 5.36 |
4229 | 4521 | 6.428159 | CCTACCAAGATACAACTATTGCATCC | 59.572 | 42.308 | 0.00 | 0.00 | 34.62 | 3.51 |
4282 | 4575 | 5.350365 | GCACATCTGACGGAACAATTAGTTA | 59.650 | 40.000 | 0.00 | 0.00 | 41.51 | 2.24 |
4283 | 4576 | 6.037172 | GCACATCTGACGGAACAATTAGTTAT | 59.963 | 38.462 | 0.00 | 0.00 | 41.51 | 1.89 |
4284 | 4577 | 7.223971 | GCACATCTGACGGAACAATTAGTTATA | 59.776 | 37.037 | 0.00 | 0.00 | 41.51 | 0.98 |
4428 | 4721 | 1.847818 | TGTGGTTTCTTCGTCAGACG | 58.152 | 50.000 | 17.33 | 17.33 | 44.19 | 4.18 |
4452 | 4745 | 3.247648 | GCGCAACAACATATAGGTACCAG | 59.752 | 47.826 | 15.94 | 0.69 | 0.00 | 4.00 |
4495 | 4788 | 1.546834 | AATCGTCGCGCTTTACTCTC | 58.453 | 50.000 | 5.56 | 0.00 | 0.00 | 3.20 |
4526 | 4819 | 0.252375 | AATGCCAACATTGCCTCCCT | 60.252 | 50.000 | 0.00 | 0.00 | 44.90 | 4.20 |
4527 | 4820 | 0.974010 | ATGCCAACATTGCCTCCCTG | 60.974 | 55.000 | 0.00 | 0.00 | 30.07 | 4.45 |
4528 | 4821 | 1.607467 | GCCAACATTGCCTCCCTGT | 60.607 | 57.895 | 0.00 | 0.00 | 0.00 | 4.00 |
4529 | 4822 | 1.187567 | GCCAACATTGCCTCCCTGTT | 61.188 | 55.000 | 0.00 | 0.00 | 33.55 | 3.16 |
4530 | 4823 | 0.604578 | CCAACATTGCCTCCCTGTTG | 59.395 | 55.000 | 7.49 | 7.49 | 45.84 | 3.33 |
4569 | 4862 | 2.433970 | CTCCCTCAACAAGATCCCTCTC | 59.566 | 54.545 | 0.00 | 0.00 | 0.00 | 3.20 |
4587 | 4880 | 0.181114 | TCTCCATTGCCGGAATCCTG | 59.819 | 55.000 | 5.05 | 0.00 | 33.65 | 3.86 |
4757 | 5051 | 1.542108 | GCAGGGCTATTAGCAGGAGTG | 60.542 | 57.143 | 17.11 | 7.57 | 44.75 | 3.51 |
4803 | 5097 | 2.409948 | AAACTCCCAGTCATAGCTGC | 57.590 | 50.000 | 0.00 | 0.00 | 35.28 | 5.25 |
4918 | 5263 | 0.102300 | GCCTGGTGCTTCGTTTTGTT | 59.898 | 50.000 | 0.00 | 0.00 | 36.87 | 2.83 |
5034 | 5404 | 3.496870 | GCAGTTGGGGGTATAGAAGATGG | 60.497 | 52.174 | 0.00 | 0.00 | 0.00 | 3.51 |
5079 | 5453 | 2.765689 | TTCATTGTTGGGTTGGAGGT | 57.234 | 45.000 | 0.00 | 0.00 | 0.00 | 3.85 |
5112 | 5486 | 1.030488 | CCAACTCAGCTGGGCAGATG | 61.030 | 60.000 | 15.27 | 8.79 | 45.52 | 2.90 |
5135 | 5509 | 5.242615 | TGAGATCGCTGCTGTATATTCTCTT | 59.757 | 40.000 | 0.00 | 0.00 | 31.78 | 2.85 |
5136 | 5510 | 5.708948 | AGATCGCTGCTGTATATTCTCTTC | 58.291 | 41.667 | 0.00 | 0.00 | 0.00 | 2.87 |
5140 | 5514 | 5.300539 | TCGCTGCTGTATATTCTCTTCTCTT | 59.699 | 40.000 | 0.00 | 0.00 | 0.00 | 2.85 |
5141 | 5515 | 6.486993 | TCGCTGCTGTATATTCTCTTCTCTTA | 59.513 | 38.462 | 0.00 | 0.00 | 0.00 | 2.10 |
5164 | 5538 | 2.761208 | CTCTTATCCTGGAGACACGGTT | 59.239 | 50.000 | 1.52 | 0.00 | 35.60 | 4.44 |
5180 | 5554 | 1.439679 | GGTTTCTGTTCTACCGGCTG | 58.560 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
5448 | 5933 | 8.414629 | AATGAAGAAGAAAAGGCAGAGTAAAT | 57.585 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
5449 | 5934 | 7.206981 | TGAAGAAGAAAAGGCAGAGTAAATG | 57.793 | 36.000 | 0.00 | 0.00 | 0.00 | 2.32 |
5451 | 5936 | 7.173907 | TGAAGAAGAAAAGGCAGAGTAAATGAG | 59.826 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
5453 | 5938 | 4.013050 | AGAAAAGGCAGAGTAAATGAGGC | 58.987 | 43.478 | 0.00 | 0.00 | 0.00 | 4.70 |
5454 | 5939 | 3.728385 | AAAGGCAGAGTAAATGAGGCT | 57.272 | 42.857 | 0.00 | 0.00 | 36.60 | 4.58 |
5463 | 5952 | 2.428890 | AGTAAATGAGGCTGAGGAGACG | 59.571 | 50.000 | 0.00 | 0.00 | 29.20 | 4.18 |
5595 | 6100 | 0.250467 | TTGGCTCAGCACTGTCCTTC | 60.250 | 55.000 | 0.00 | 0.00 | 0.00 | 3.46 |
5680 | 6190 | 3.192844 | TGCAGTTGCCAGTACTACTCTAC | 59.807 | 47.826 | 0.00 | 0.00 | 41.18 | 2.59 |
5681 | 6191 | 3.444388 | GCAGTTGCCAGTACTACTCTACT | 59.556 | 47.826 | 0.00 | 0.00 | 34.31 | 2.57 |
5682 | 6192 | 4.439016 | GCAGTTGCCAGTACTACTCTACTC | 60.439 | 50.000 | 0.00 | 0.00 | 34.31 | 2.59 |
5683 | 6193 | 4.700692 | CAGTTGCCAGTACTACTCTACTCA | 59.299 | 45.833 | 0.00 | 0.00 | 0.00 | 3.41 |
5684 | 6194 | 5.183331 | CAGTTGCCAGTACTACTCTACTCAA | 59.817 | 44.000 | 0.00 | 0.00 | 0.00 | 3.02 |
5685 | 6195 | 5.416326 | AGTTGCCAGTACTACTCTACTCAAG | 59.584 | 44.000 | 0.00 | 0.00 | 0.00 | 3.02 |
5686 | 6196 | 4.270834 | TGCCAGTACTACTCTACTCAAGG | 58.729 | 47.826 | 0.00 | 0.00 | 0.00 | 3.61 |
5687 | 6197 | 3.067040 | GCCAGTACTACTCTACTCAAGGC | 59.933 | 52.174 | 0.00 | 0.00 | 30.40 | 4.35 |
5688 | 6198 | 4.528920 | CCAGTACTACTCTACTCAAGGCT | 58.471 | 47.826 | 0.00 | 0.00 | 0.00 | 4.58 |
5689 | 6199 | 4.951094 | CCAGTACTACTCTACTCAAGGCTT | 59.049 | 45.833 | 0.00 | 0.00 | 0.00 | 4.35 |
5690 | 6200 | 5.163602 | CCAGTACTACTCTACTCAAGGCTTG | 60.164 | 48.000 | 21.17 | 21.17 | 0.00 | 4.01 |
5691 | 6201 | 5.648526 | CAGTACTACTCTACTCAAGGCTTGA | 59.351 | 44.000 | 27.01 | 27.01 | 38.17 | 3.02 |
5734 | 6244 | 0.949397 | CGAGTTAGCCATGCATGCAT | 59.051 | 50.000 | 27.46 | 27.46 | 37.08 | 3.96 |
5749 | 6259 | 1.869774 | TGCATGCGCAGGTTATAGAG | 58.130 | 50.000 | 24.27 | 1.92 | 45.36 | 2.43 |
5750 | 6260 | 1.151668 | GCATGCGCAGGTTATAGAGG | 58.848 | 55.000 | 24.27 | 0.00 | 38.36 | 3.69 |
5751 | 6261 | 1.151668 | CATGCGCAGGTTATAGAGGC | 58.848 | 55.000 | 18.32 | 0.00 | 0.00 | 4.70 |
5753 | 6263 | 4.655527 | CGCAGGTTATAGAGGCGG | 57.344 | 61.111 | 0.00 | 0.00 | 43.63 | 6.13 |
5754 | 6264 | 2.038690 | CGCAGGTTATAGAGGCGGA | 58.961 | 57.895 | 0.00 | 0.00 | 43.63 | 5.54 |
5755 | 6265 | 0.387929 | CGCAGGTTATAGAGGCGGAA | 59.612 | 55.000 | 0.00 | 0.00 | 43.63 | 4.30 |
5756 | 6266 | 1.867166 | GCAGGTTATAGAGGCGGAAC | 58.133 | 55.000 | 0.00 | 0.00 | 0.00 | 3.62 |
5757 | 6267 | 1.413077 | GCAGGTTATAGAGGCGGAACT | 59.587 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
5758 | 6268 | 2.158943 | GCAGGTTATAGAGGCGGAACTT | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 2.66 |
5759 | 6269 | 3.458189 | CAGGTTATAGAGGCGGAACTTG | 58.542 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
5760 | 6270 | 3.132289 | CAGGTTATAGAGGCGGAACTTGA | 59.868 | 47.826 | 0.00 | 0.00 | 32.35 | 3.02 |
5761 | 6271 | 3.385111 | AGGTTATAGAGGCGGAACTTGAG | 59.615 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
5762 | 6272 | 3.492829 | GGTTATAGAGGCGGAACTTGAGG | 60.493 | 52.174 | 0.00 | 0.00 | 0.00 | 3.86 |
5763 | 6273 | 1.123928 | ATAGAGGCGGAACTTGAGGG | 58.876 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
5764 | 6274 | 0.976073 | TAGAGGCGGAACTTGAGGGG | 60.976 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
5765 | 6275 | 3.330720 | AGGCGGAACTTGAGGGGG | 61.331 | 66.667 | 0.00 | 0.00 | 0.00 | 5.40 |
5768 | 6278 | 4.778143 | CGGAACTTGAGGGGGCGG | 62.778 | 72.222 | 0.00 | 0.00 | 0.00 | 6.13 |
5769 | 6279 | 4.426313 | GGAACTTGAGGGGGCGGG | 62.426 | 72.222 | 0.00 | 0.00 | 0.00 | 6.13 |
5770 | 6280 | 4.426313 | GAACTTGAGGGGGCGGGG | 62.426 | 72.222 | 0.00 | 0.00 | 0.00 | 5.73 |
5781 | 6291 | 4.475135 | GGCGGGGGCTTCTCTGAC | 62.475 | 72.222 | 0.00 | 0.00 | 0.00 | 3.51 |
5782 | 6292 | 3.394836 | GCGGGGGCTTCTCTGACT | 61.395 | 66.667 | 0.00 | 0.00 | 0.00 | 3.41 |
5783 | 6293 | 2.581354 | CGGGGGCTTCTCTGACTG | 59.419 | 66.667 | 0.00 | 0.00 | 0.00 | 3.51 |
5784 | 6294 | 1.984570 | CGGGGGCTTCTCTGACTGA | 60.985 | 63.158 | 0.00 | 0.00 | 0.00 | 3.41 |
5785 | 6295 | 1.544825 | CGGGGGCTTCTCTGACTGAA | 61.545 | 60.000 | 0.00 | 0.00 | 0.00 | 3.02 |
5786 | 6296 | 0.035915 | GGGGGCTTCTCTGACTGAAC | 60.036 | 60.000 | 0.00 | 0.00 | 0.00 | 3.18 |
5787 | 6297 | 0.980423 | GGGGCTTCTCTGACTGAACT | 59.020 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
5788 | 6298 | 1.349357 | GGGGCTTCTCTGACTGAACTT | 59.651 | 52.381 | 0.00 | 0.00 | 0.00 | 2.66 |
5789 | 6299 | 2.421619 | GGGCTTCTCTGACTGAACTTG | 58.578 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
5790 | 6300 | 2.037772 | GGGCTTCTCTGACTGAACTTGA | 59.962 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
5791 | 6301 | 3.495100 | GGGCTTCTCTGACTGAACTTGAA | 60.495 | 47.826 | 0.00 | 0.00 | 0.00 | 2.69 |
5792 | 6302 | 4.130118 | GGCTTCTCTGACTGAACTTGAAA | 58.870 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
5793 | 6303 | 4.759183 | GGCTTCTCTGACTGAACTTGAAAT | 59.241 | 41.667 | 0.00 | 0.00 | 0.00 | 2.17 |
5794 | 6304 | 5.240403 | GGCTTCTCTGACTGAACTTGAAATT | 59.760 | 40.000 | 0.00 | 0.00 | 0.00 | 1.82 |
5795 | 6305 | 6.369799 | GCTTCTCTGACTGAACTTGAAATTC | 58.630 | 40.000 | 0.00 | 0.00 | 0.00 | 2.17 |
5796 | 6306 | 6.204495 | GCTTCTCTGACTGAACTTGAAATTCT | 59.796 | 38.462 | 0.00 | 0.00 | 0.00 | 2.40 |
5797 | 6307 | 7.488187 | TTCTCTGACTGAACTTGAAATTCTG | 57.512 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
5798 | 6308 | 6.586344 | TCTCTGACTGAACTTGAAATTCTGT | 58.414 | 36.000 | 0.00 | 0.00 | 39.91 | 3.41 |
5799 | 6309 | 7.726216 | TCTCTGACTGAACTTGAAATTCTGTA | 58.274 | 34.615 | 0.00 | 0.00 | 38.07 | 2.74 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
399 | 402 | 3.284449 | GGTCCAAGTTTGCGCCGT | 61.284 | 61.111 | 4.18 | 0.00 | 0.00 | 5.68 |
414 | 417 | 3.659089 | CTTTCGACCCATCCGCGGT | 62.659 | 63.158 | 27.15 | 10.00 | 35.88 | 5.68 |
548 | 554 | 1.556911 | AGGCAGATACTGGAGGTTGTG | 59.443 | 52.381 | 0.00 | 0.00 | 31.21 | 3.33 |
558 | 564 | 4.140900 | AGGTGTACCAGATAGGCAGATACT | 60.141 | 45.833 | 3.56 | 0.00 | 43.14 | 2.12 |
603 | 609 | 0.691413 | TCACCCCATACGCCCATACA | 60.691 | 55.000 | 0.00 | 0.00 | 0.00 | 2.29 |
607 | 613 | 2.915079 | CATCACCCCATACGCCCA | 59.085 | 61.111 | 0.00 | 0.00 | 0.00 | 5.36 |
608 | 614 | 2.594592 | GCATCACCCCATACGCCC | 60.595 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
622 | 628 | 1.662446 | GCAGCAAGCAAACACGCAT | 60.662 | 52.632 | 0.00 | 0.00 | 44.79 | 4.73 |
680 | 686 | 0.533978 | TAGGCTGTCGCAACTTGCAA | 60.534 | 50.000 | 14.10 | 0.00 | 45.36 | 4.08 |
687 | 693 | 1.406341 | GGTATTGGTAGGCTGTCGCAA | 60.406 | 52.381 | 0.00 | 0.00 | 38.10 | 4.85 |
698 | 704 | 2.942804 | TCCGGTCGTATGGTATTGGTA | 58.057 | 47.619 | 0.00 | 0.00 | 0.00 | 3.25 |
699 | 705 | 1.779221 | TCCGGTCGTATGGTATTGGT | 58.221 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
702 | 708 | 4.886579 | GGTTTATCCGGTCGTATGGTATT | 58.113 | 43.478 | 0.00 | 0.00 | 0.00 | 1.89 |
703 | 709 | 4.525912 | GGTTTATCCGGTCGTATGGTAT | 57.474 | 45.455 | 0.00 | 0.00 | 0.00 | 2.73 |
729 | 735 | 1.560860 | GCAGAAAACGCAGCGTCTCT | 61.561 | 55.000 | 23.22 | 22.00 | 39.99 | 3.10 |
730 | 736 | 1.154580 | GCAGAAAACGCAGCGTCTC | 60.155 | 57.895 | 23.22 | 20.09 | 39.99 | 3.36 |
731 | 737 | 2.939022 | GCAGAAAACGCAGCGTCT | 59.061 | 55.556 | 23.22 | 11.67 | 39.99 | 4.18 |
732 | 738 | 2.497628 | CGCAGAAAACGCAGCGTC | 60.498 | 61.111 | 23.22 | 9.17 | 44.67 | 5.19 |
736 | 742 | 1.439365 | GCTGTCGCAGAAAACGCAG | 60.439 | 57.895 | 10.46 | 0.00 | 39.69 | 5.18 |
738 | 744 | 2.127232 | GGCTGTCGCAGAAAACGC | 60.127 | 61.111 | 10.46 | 0.00 | 39.69 | 4.84 |
741 | 747 | 1.959226 | GACGGGCTGTCGCAGAAAA | 60.959 | 57.895 | 11.29 | 0.00 | 39.69 | 2.29 |
742 | 748 | 2.357034 | GACGGGCTGTCGCAGAAA | 60.357 | 61.111 | 11.29 | 0.00 | 39.69 | 2.52 |
757 | 763 | 3.053849 | GCGAGAGAGACCACGGGAC | 62.054 | 68.421 | 0.00 | 0.00 | 0.00 | 4.46 |
758 | 764 | 2.750637 | GCGAGAGAGACCACGGGA | 60.751 | 66.667 | 0.00 | 0.00 | 0.00 | 5.14 |
759 | 765 | 2.752238 | AGCGAGAGAGACCACGGG | 60.752 | 66.667 | 0.00 | 0.00 | 0.00 | 5.28 |
760 | 766 | 2.041115 | TCAGCGAGAGAGACCACGG | 61.041 | 63.158 | 0.00 | 0.00 | 0.00 | 4.94 |
761 | 767 | 1.135731 | GTCAGCGAGAGAGACCACG | 59.864 | 63.158 | 0.00 | 0.00 | 33.38 | 4.94 |
762 | 768 | 0.450184 | GAGTCAGCGAGAGAGACCAC | 59.550 | 60.000 | 0.00 | 0.00 | 38.09 | 4.16 |
763 | 769 | 1.021920 | CGAGTCAGCGAGAGAGACCA | 61.022 | 60.000 | 0.00 | 0.00 | 38.09 | 4.02 |
764 | 770 | 1.022451 | ACGAGTCAGCGAGAGAGACC | 61.022 | 60.000 | 0.00 | 0.00 | 38.09 | 3.85 |
765 | 771 | 0.372334 | GACGAGTCAGCGAGAGAGAC | 59.628 | 60.000 | 0.00 | 0.00 | 37.76 | 3.36 |
766 | 772 | 0.037232 | TGACGAGTCAGCGAGAGAGA | 60.037 | 55.000 | 1.24 | 0.00 | 34.14 | 3.10 |
767 | 773 | 0.799393 | TTGACGAGTCAGCGAGAGAG | 59.201 | 55.000 | 6.03 | 0.00 | 41.13 | 3.20 |
768 | 774 | 0.799393 | CTTGACGAGTCAGCGAGAGA | 59.201 | 55.000 | 6.03 | 0.00 | 41.13 | 3.10 |
769 | 775 | 0.796491 | GCTTGACGAGTCAGCGAGAG | 60.796 | 60.000 | 6.03 | 2.27 | 41.13 | 3.20 |
836 | 842 | 3.693572 | AGGGAGGAGGCTGGAGCT | 61.694 | 66.667 | 0.00 | 0.00 | 41.70 | 4.09 |
837 | 843 | 3.160748 | GAGGGAGGAGGCTGGAGC | 61.161 | 72.222 | 0.00 | 0.00 | 41.14 | 4.70 |
842 | 848 | 4.851214 | GAGGCGAGGGAGGAGGCT | 62.851 | 72.222 | 0.00 | 0.00 | 43.66 | 4.58 |
845 | 851 | 3.151022 | GTGGAGGCGAGGGAGGAG | 61.151 | 72.222 | 0.00 | 0.00 | 0.00 | 3.69 |
846 | 852 | 4.779733 | GGTGGAGGCGAGGGAGGA | 62.780 | 72.222 | 0.00 | 0.00 | 0.00 | 3.71 |
949 | 988 | 2.492090 | CGACGAGCTGGGGAGAAG | 59.508 | 66.667 | 0.00 | 0.00 | 0.00 | 2.85 |
950 | 989 | 3.760035 | GCGACGAGCTGGGGAGAA | 61.760 | 66.667 | 0.00 | 0.00 | 44.04 | 2.87 |
1005 | 1044 | 2.983907 | GGAACCCTTCCTGCTACTAC | 57.016 | 55.000 | 0.00 | 0.00 | 46.57 | 2.73 |
1067 | 1110 | 1.628846 | GCTAGTTGGGAGGAAACCAGA | 59.371 | 52.381 | 0.00 | 0.00 | 39.57 | 3.86 |
1128 | 1171 | 2.623239 | CCCCAAACCTACCCTCAAATCC | 60.623 | 54.545 | 0.00 | 0.00 | 0.00 | 3.01 |
1129 | 1172 | 2.735151 | CCCCAAACCTACCCTCAAATC | 58.265 | 52.381 | 0.00 | 0.00 | 0.00 | 2.17 |
1130 | 1173 | 1.273041 | GCCCCAAACCTACCCTCAAAT | 60.273 | 52.381 | 0.00 | 0.00 | 0.00 | 2.32 |
1131 | 1174 | 0.113580 | GCCCCAAACCTACCCTCAAA | 59.886 | 55.000 | 0.00 | 0.00 | 0.00 | 2.69 |
1132 | 1175 | 1.771646 | GCCCCAAACCTACCCTCAA | 59.228 | 57.895 | 0.00 | 0.00 | 0.00 | 3.02 |
1133 | 1176 | 2.235761 | GGCCCCAAACCTACCCTCA | 61.236 | 63.158 | 0.00 | 0.00 | 0.00 | 3.86 |
1134 | 1177 | 1.929088 | AGGCCCCAAACCTACCCTC | 60.929 | 63.158 | 0.00 | 0.00 | 35.10 | 4.30 |
1135 | 1178 | 2.213059 | AGGCCCCAAACCTACCCT | 59.787 | 61.111 | 0.00 | 0.00 | 35.10 | 4.34 |
1149 | 1192 | 8.517878 | ACTCAATATATACATGAAATTGCAGGC | 58.482 | 33.333 | 0.00 | 0.00 | 0.00 | 4.85 |
1169 | 1216 | 5.334569 | CGAATCCACGGTTAACAAACTCAAT | 60.335 | 40.000 | 8.10 | 0.00 | 0.00 | 2.57 |
1174 | 1221 | 3.191735 | CCGAATCCACGGTTAACAAAC | 57.808 | 47.619 | 8.10 | 0.00 | 46.70 | 2.93 |
1244 | 1291 | 3.308401 | AGAACAGGGCCAAACAGAAAAT | 58.692 | 40.909 | 6.18 | 0.00 | 0.00 | 1.82 |
1249 | 1296 | 1.826385 | CCTAGAACAGGGCCAAACAG | 58.174 | 55.000 | 6.18 | 0.00 | 41.26 | 3.16 |
1294 | 1346 | 6.459066 | GCTCCTAATCACTCATAGCACATAA | 58.541 | 40.000 | 0.00 | 0.00 | 0.00 | 1.90 |
1321 | 1374 | 2.126502 | GCATTCCGGCCACGTTTG | 60.127 | 61.111 | 2.24 | 0.00 | 38.78 | 2.93 |
1328 | 1381 | 4.133796 | GGTTGCAGCATTCCGGCC | 62.134 | 66.667 | 2.05 | 0.00 | 33.36 | 6.13 |
1331 | 1384 | 1.102154 | TTATGGGTTGCAGCATTCCG | 58.898 | 50.000 | 2.05 | 0.00 | 0.00 | 4.30 |
1334 | 1387 | 8.873144 | AGATATTTAATTATGGGTTGCAGCATT | 58.127 | 29.630 | 2.05 | 0.00 | 0.00 | 3.56 |
1381 | 1434 | 9.537192 | CGTGATAGTTACCCTGTGAAAATATTA | 57.463 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
1400 | 1453 | 4.728882 | GCCAAGTTTCAAGCATCGTGATAG | 60.729 | 45.833 | 0.00 | 0.00 | 0.00 | 2.08 |
1402 | 1455 | 2.095059 | GCCAAGTTTCAAGCATCGTGAT | 60.095 | 45.455 | 0.00 | 0.00 | 0.00 | 3.06 |
1485 | 1544 | 6.500684 | TCAGTTCCAATATTTGCTCAGAAC | 57.499 | 37.500 | 0.00 | 0.00 | 32.09 | 3.01 |
1553 | 1612 | 9.243105 | ACTATAAGCATTTACAGTTTCCACAAT | 57.757 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
1578 | 1695 | 0.387239 | GCATCGTGGTGGAGCAAAAC | 60.387 | 55.000 | 0.00 | 0.00 | 0.00 | 2.43 |
1590 | 1707 | 6.603237 | TCCTATACTTCAAAATGCATCGTG | 57.397 | 37.500 | 0.00 | 0.91 | 0.00 | 4.35 |
1612 | 1731 | 5.358160 | CCAAAAGAGTTTCCCTATGTCCATC | 59.642 | 44.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1622 | 1741 | 6.459670 | TTACAGTTTCCAAAAGAGTTTCCC | 57.540 | 37.500 | 0.00 | 0.00 | 0.00 | 3.97 |
1670 | 1790 | 8.239314 | CCATATGTCCATACTACAAAATGCATC | 58.761 | 37.037 | 0.00 | 0.00 | 0.00 | 3.91 |
1681 | 1801 | 9.613428 | CAAAAGAGTTTCCATATGTCCATACTA | 57.387 | 33.333 | 1.24 | 0.00 | 0.00 | 1.82 |
1704 | 1829 | 7.495901 | TGCATCAAGAATTAACAGTTTCCAAA | 58.504 | 30.769 | 0.00 | 0.00 | 0.00 | 3.28 |
1768 | 1893 | 1.606224 | GCAGGTCCCATTTTTGCACTG | 60.606 | 52.381 | 0.00 | 0.00 | 34.99 | 3.66 |
2085 | 2210 | 1.266178 | TTGAGGAGGCGACAATGAGA | 58.734 | 50.000 | 0.00 | 0.00 | 0.00 | 3.27 |
2173 | 2298 | 3.454082 | AGGACCTCATCAAAGATCTGGAC | 59.546 | 47.826 | 0.00 | 0.00 | 0.00 | 4.02 |
2242 | 2367 | 2.559381 | AGTGTGAGGGCCTATCTCTT | 57.441 | 50.000 | 5.73 | 0.00 | 32.78 | 2.85 |
2254 | 2379 | 0.248843 | GGAGCCTGAGGAAGTGTGAG | 59.751 | 60.000 | 0.65 | 0.00 | 0.00 | 3.51 |
2422 | 2547 | 8.019669 | CACAAGATTGCATAAGAAGTATATGGC | 58.980 | 37.037 | 0.00 | 0.00 | 32.54 | 4.40 |
2448 | 2573 | 4.322567 | GCAGGATATCCATGAGAAGGAAC | 58.677 | 47.826 | 23.81 | 1.22 | 38.93 | 3.62 |
2507 | 2636 | 3.436704 | CACCGATACAATGTTCTGCAGTT | 59.563 | 43.478 | 14.67 | 0.00 | 0.00 | 3.16 |
2551 | 2688 | 4.104086 | TCAGTTGGGATAACACCAGAGAT | 58.896 | 43.478 | 0.00 | 0.00 | 39.57 | 2.75 |
2588 | 2725 | 4.749598 | CAGGCAACCAAACTTTGATTAACC | 59.250 | 41.667 | 2.87 | 0.00 | 37.17 | 2.85 |
2738 | 2876 | 4.918810 | ATTCAATAAAAGATGCCCCGAC | 57.081 | 40.909 | 0.00 | 0.00 | 0.00 | 4.79 |
2870 | 3025 | 4.980434 | AGTTATCGTGTCATTATACGCCAC | 59.020 | 41.667 | 0.00 | 0.00 | 39.76 | 5.01 |
2874 | 3029 | 7.136772 | TCTTGGAGTTATCGTGTCATTATACG | 58.863 | 38.462 | 0.00 | 0.00 | 41.13 | 3.06 |
2875 | 3030 | 8.867112 | TTCTTGGAGTTATCGTGTCATTATAC | 57.133 | 34.615 | 0.00 | 0.00 | 0.00 | 1.47 |
2877 | 3032 | 7.657761 | GGATTCTTGGAGTTATCGTGTCATTAT | 59.342 | 37.037 | 0.00 | 0.00 | 0.00 | 1.28 |
2878 | 3033 | 6.984474 | GGATTCTTGGAGTTATCGTGTCATTA | 59.016 | 38.462 | 0.00 | 0.00 | 0.00 | 1.90 |
2879 | 3034 | 5.817816 | GGATTCTTGGAGTTATCGTGTCATT | 59.182 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2880 | 3035 | 5.104941 | TGGATTCTTGGAGTTATCGTGTCAT | 60.105 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
2881 | 3036 | 4.221924 | TGGATTCTTGGAGTTATCGTGTCA | 59.778 | 41.667 | 0.00 | 0.00 | 0.00 | 3.58 |
2882 | 3037 | 4.755411 | TGGATTCTTGGAGTTATCGTGTC | 58.245 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
2883 | 3038 | 4.819105 | TGGATTCTTGGAGTTATCGTGT | 57.181 | 40.909 | 0.00 | 0.00 | 0.00 | 4.49 |
2884 | 3039 | 5.445939 | CGTTTGGATTCTTGGAGTTATCGTG | 60.446 | 44.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2885 | 3040 | 4.630069 | CGTTTGGATTCTTGGAGTTATCGT | 59.370 | 41.667 | 0.00 | 0.00 | 0.00 | 3.73 |
2886 | 3041 | 4.494199 | GCGTTTGGATTCTTGGAGTTATCG | 60.494 | 45.833 | 0.00 | 0.00 | 0.00 | 2.92 |
2887 | 3042 | 4.636206 | AGCGTTTGGATTCTTGGAGTTATC | 59.364 | 41.667 | 0.00 | 0.00 | 0.00 | 1.75 |
2888 | 3043 | 4.589908 | AGCGTTTGGATTCTTGGAGTTAT | 58.410 | 39.130 | 0.00 | 0.00 | 0.00 | 1.89 |
2889 | 3044 | 4.000988 | GAGCGTTTGGATTCTTGGAGTTA | 58.999 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
2890 | 3045 | 2.814336 | GAGCGTTTGGATTCTTGGAGTT | 59.186 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
2891 | 3046 | 2.427506 | GAGCGTTTGGATTCTTGGAGT | 58.572 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
2892 | 3047 | 1.740025 | GGAGCGTTTGGATTCTTGGAG | 59.260 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
2893 | 3048 | 1.821216 | GGAGCGTTTGGATTCTTGGA | 58.179 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2894 | 3049 | 0.447801 | CGGAGCGTTTGGATTCTTGG | 59.552 | 55.000 | 0.00 | 0.00 | 0.00 | 3.61 |
2895 | 3050 | 1.156736 | ACGGAGCGTTTGGATTCTTG | 58.843 | 50.000 | 0.00 | 0.00 | 36.35 | 3.02 |
2896 | 3051 | 3.625745 | ACGGAGCGTTTGGATTCTT | 57.374 | 47.368 | 0.00 | 0.00 | 36.35 | 2.52 |
2906 | 3061 | 3.454371 | AGCTATCAATTAACGGAGCGT | 57.546 | 42.857 | 0.00 | 0.00 | 43.97 | 5.07 |
2907 | 3062 | 3.555956 | ACAAGCTATCAATTAACGGAGCG | 59.444 | 43.478 | 0.00 | 0.00 | 35.09 | 5.03 |
2908 | 3063 | 5.485662 | AACAAGCTATCAATTAACGGAGC | 57.514 | 39.130 | 0.00 | 0.00 | 0.00 | 4.70 |
2909 | 3064 | 5.817816 | AGGAACAAGCTATCAATTAACGGAG | 59.182 | 40.000 | 0.00 | 0.00 | 0.00 | 4.63 |
2910 | 3065 | 5.741011 | AGGAACAAGCTATCAATTAACGGA | 58.259 | 37.500 | 0.00 | 0.00 | 0.00 | 4.69 |
2911 | 3066 | 5.007724 | GGAGGAACAAGCTATCAATTAACGG | 59.992 | 44.000 | 0.00 | 0.00 | 0.00 | 4.44 |
2912 | 3067 | 5.817816 | AGGAGGAACAAGCTATCAATTAACG | 59.182 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2913 | 3068 | 7.631717 | AAGGAGGAACAAGCTATCAATTAAC | 57.368 | 36.000 | 0.00 | 0.00 | 0.00 | 2.01 |
2914 | 3069 | 9.747898 | TTAAAGGAGGAACAAGCTATCAATTAA | 57.252 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
2915 | 3070 | 9.920946 | ATTAAAGGAGGAACAAGCTATCAATTA | 57.079 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
2916 | 3071 | 8.829373 | ATTAAAGGAGGAACAAGCTATCAATT | 57.171 | 30.769 | 0.00 | 0.00 | 0.00 | 2.32 |
2917 | 3072 | 8.055181 | TGATTAAAGGAGGAACAAGCTATCAAT | 58.945 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
2918 | 3073 | 7.402054 | TGATTAAAGGAGGAACAAGCTATCAA | 58.598 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
2919 | 3074 | 6.957631 | TGATTAAAGGAGGAACAAGCTATCA | 58.042 | 36.000 | 0.00 | 0.00 | 0.00 | 2.15 |
2920 | 3075 | 6.017523 | GCTGATTAAAGGAGGAACAAGCTATC | 60.018 | 42.308 | 0.00 | 0.00 | 0.00 | 2.08 |
3004 | 3159 | 1.549620 | TCAGAGAAAGAGCCTCAGCAG | 59.450 | 52.381 | 0.00 | 0.00 | 43.56 | 4.24 |
3034 | 3239 | 7.603024 | AGGTTTGCATAGTCTGAACTAACTAAC | 59.397 | 37.037 | 0.00 | 0.00 | 41.25 | 2.34 |
3041 | 3246 | 4.623932 | TCAGGTTTGCATAGTCTGAACT | 57.376 | 40.909 | 7.38 | 0.00 | 39.66 | 3.01 |
3162 | 3370 | 6.500684 | AAATGTGCACGACTTATCAGAAAT | 57.499 | 33.333 | 13.13 | 0.00 | 0.00 | 2.17 |
3166 | 3374 | 6.598525 | TGTTAAAATGTGCACGACTTATCAG | 58.401 | 36.000 | 13.13 | 0.00 | 0.00 | 2.90 |
3176 | 3398 | 7.651704 | AGGTACAGAAAATGTTAAAATGTGCAC | 59.348 | 33.333 | 10.75 | 10.75 | 39.96 | 4.57 |
3361 | 3597 | 5.450137 | CCTTAAGCATTCAAATCCTGCTCAG | 60.450 | 44.000 | 0.00 | 0.00 | 45.10 | 3.35 |
3382 | 3618 | 4.280929 | ACAGAAAAGAAAATAAGCCGCCTT | 59.719 | 37.500 | 0.00 | 0.00 | 35.05 | 4.35 |
3386 | 3622 | 7.581476 | TCAGTAACAGAAAAGAAAATAAGCCG | 58.419 | 34.615 | 0.00 | 0.00 | 0.00 | 5.52 |
3407 | 3644 | 9.836864 | TGAATTGACTACATGCTATTATTCAGT | 57.163 | 29.630 | 0.00 | 0.00 | 0.00 | 3.41 |
3492 | 3734 | 3.519913 | AGCTTAGTCAGGTCTTTAAGGGG | 59.480 | 47.826 | 0.00 | 0.00 | 0.00 | 4.79 |
3510 | 3752 | 9.816354 | GAGATTATCTACAGAAAAAGAGAGCTT | 57.184 | 33.333 | 0.00 | 0.00 | 35.37 | 3.74 |
3512 | 3754 | 9.248291 | CTGAGATTATCTACAGAAAAAGAGAGC | 57.752 | 37.037 | 12.90 | 0.00 | 32.90 | 4.09 |
3519 | 3761 | 7.012704 | GCAATGGCTGAGATTATCTACAGAAAA | 59.987 | 37.037 | 18.75 | 8.58 | 36.96 | 2.29 |
3643 | 3885 | 7.157347 | TGCATATTGTAAATTTTCAGTGGCAA | 58.843 | 30.769 | 14.16 | 4.16 | 0.00 | 4.52 |
3673 | 3915 | 7.996644 | ACATTTGGGAAGAGTAACAGTTTAAGA | 59.003 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
3674 | 3916 | 8.166422 | ACATTTGGGAAGAGTAACAGTTTAAG | 57.834 | 34.615 | 0.00 | 0.00 | 0.00 | 1.85 |
3676 | 3918 | 8.528044 | AAACATTTGGGAAGAGTAACAGTTTA | 57.472 | 30.769 | 0.00 | 0.00 | 0.00 | 2.01 |
3714 | 3958 | 6.438741 | TCACAACTGAAGAGATAGGAACTGAT | 59.561 | 38.462 | 0.00 | 0.00 | 41.52 | 2.90 |
3725 | 3969 | 3.827302 | GAGGTACCTCACAACTGAAGAGA | 59.173 | 47.826 | 32.91 | 0.00 | 42.31 | 3.10 |
3726 | 3970 | 3.829601 | AGAGGTACCTCACAACTGAAGAG | 59.170 | 47.826 | 37.27 | 0.00 | 44.99 | 2.85 |
3757 | 4028 | 8.514136 | TGGAAGCAAATAATTCGTTTGTTAAG | 57.486 | 30.769 | 14.22 | 0.00 | 38.49 | 1.85 |
3882 | 4153 | 1.141053 | ACGAGGATAACTCCCAATGGC | 59.859 | 52.381 | 0.00 | 0.00 | 43.21 | 4.40 |
4053 | 4345 | 2.424956 | GGAACTGAGTTGGAATGCCATC | 59.575 | 50.000 | 0.90 | 0.00 | 45.46 | 3.51 |
4089 | 4381 | 6.096001 | AGGTTCTTTAGGCTGCATTATTTGAG | 59.904 | 38.462 | 0.50 | 0.00 | 0.00 | 3.02 |
4103 | 4395 | 2.289819 | TGGCCGTAACAGGTTCTTTAGG | 60.290 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
4198 | 4490 | 3.452627 | AGTTGTATCTTGGTAGGAGCCTG | 59.547 | 47.826 | 0.00 | 0.00 | 0.00 | 4.85 |
4282 | 4575 | 8.906867 | AGACACAAGTAGCATTTGCAATTATAT | 58.093 | 29.630 | 0.00 | 0.00 | 45.16 | 0.86 |
4283 | 4576 | 8.279970 | AGACACAAGTAGCATTTGCAATTATA | 57.720 | 30.769 | 0.00 | 0.00 | 45.16 | 0.98 |
4284 | 4577 | 7.161773 | AGACACAAGTAGCATTTGCAATTAT | 57.838 | 32.000 | 0.00 | 0.00 | 45.16 | 1.28 |
4428 | 4721 | 3.493503 | GGTACCTATATGTTGTTGCGCTC | 59.506 | 47.826 | 9.73 | 2.14 | 0.00 | 5.03 |
4452 | 4745 | 4.877378 | AGAGAGGCTGATCAGATTCATC | 57.123 | 45.455 | 27.04 | 15.08 | 0.00 | 2.92 |
4495 | 4788 | 6.270815 | CAATGTTGGCATTAGAAGATCAAGG | 58.729 | 40.000 | 0.00 | 0.00 | 42.91 | 3.61 |
4526 | 4819 | 0.173029 | CACAAGGCTGCAACACAACA | 59.827 | 50.000 | 0.50 | 0.00 | 0.00 | 3.33 |
4527 | 4820 | 0.528249 | CCACAAGGCTGCAACACAAC | 60.528 | 55.000 | 0.50 | 0.00 | 0.00 | 3.32 |
4528 | 4821 | 1.674764 | CCCACAAGGCTGCAACACAA | 61.675 | 55.000 | 0.50 | 0.00 | 0.00 | 3.33 |
4529 | 4822 | 2.126596 | CCCACAAGGCTGCAACACA | 61.127 | 57.895 | 0.50 | 0.00 | 0.00 | 3.72 |
4530 | 4823 | 2.730094 | CCCACAAGGCTGCAACAC | 59.270 | 61.111 | 0.50 | 0.00 | 0.00 | 3.32 |
4569 | 4862 | 1.450531 | GCAGGATTCCGGCAATGGAG | 61.451 | 60.000 | 21.09 | 0.00 | 43.90 | 3.86 |
4587 | 4880 | 0.944311 | TCGTGCGGACTTTGAAGAGC | 60.944 | 55.000 | 5.27 | 1.54 | 0.00 | 4.09 |
4724 | 5018 | 2.037136 | CCCTGCAGAGTGAAAGGCG | 61.037 | 63.158 | 17.39 | 0.00 | 0.00 | 5.52 |
4841 | 5155 | 0.030101 | GAGGTCTGATTCGAGGAGCG | 59.970 | 60.000 | 0.00 | 0.00 | 42.69 | 5.03 |
4849 | 5164 | 3.990959 | AGTTTCCCAGAGGTCTGATTC | 57.009 | 47.619 | 8.64 | 0.00 | 46.59 | 2.52 |
5079 | 5453 | 4.708177 | CTGAGTTGGTTTCAGAGGAGAAA | 58.292 | 43.478 | 0.00 | 0.00 | 43.75 | 2.52 |
5112 | 5486 | 5.309323 | AGAGAATATACAGCAGCGATCTC | 57.691 | 43.478 | 0.00 | 0.00 | 33.87 | 2.75 |
5135 | 5509 | 7.001674 | GTGTCTCCAGGATAAGAGATAAGAGA | 58.998 | 42.308 | 0.00 | 0.00 | 41.03 | 3.10 |
5136 | 5510 | 6.072728 | CGTGTCTCCAGGATAAGAGATAAGAG | 60.073 | 46.154 | 0.00 | 0.00 | 41.03 | 2.85 |
5140 | 5514 | 4.141228 | ACCGTGTCTCCAGGATAAGAGATA | 60.141 | 45.833 | 0.00 | 0.00 | 41.03 | 1.98 |
5141 | 5515 | 3.226777 | CCGTGTCTCCAGGATAAGAGAT | 58.773 | 50.000 | 0.00 | 0.00 | 41.03 | 2.75 |
5164 | 5538 | 0.246635 | GAGCAGCCGGTAGAACAGAA | 59.753 | 55.000 | 1.90 | 0.00 | 0.00 | 3.02 |
5180 | 5554 | 2.611224 | CCATGGCCAAGTTTTTCAGAGC | 60.611 | 50.000 | 10.96 | 0.00 | 0.00 | 4.09 |
5240 | 5614 | 3.614616 | GTGAATGCAGTAGAGAGAAACCG | 59.385 | 47.826 | 0.00 | 0.00 | 0.00 | 4.44 |
5332 | 5815 | 1.204467 | CAGCAAGAGAGAGACCAGACC | 59.796 | 57.143 | 0.00 | 0.00 | 0.00 | 3.85 |
5337 | 5820 | 3.258228 | GCTTAACAGCAAGAGAGAGACC | 58.742 | 50.000 | 0.00 | 0.00 | 46.49 | 3.85 |
5396 | 5880 | 4.463879 | CAGGGAGAGCGGCCACAG | 62.464 | 72.222 | 2.24 | 0.00 | 0.00 | 3.66 |
5424 | 5908 | 7.667219 | TCATTTACTCTGCCTTTTCTTCTTCAT | 59.333 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
5425 | 5909 | 6.998074 | TCATTTACTCTGCCTTTTCTTCTTCA | 59.002 | 34.615 | 0.00 | 0.00 | 0.00 | 3.02 |
5426 | 5910 | 7.361628 | CCTCATTTACTCTGCCTTTTCTTCTTC | 60.362 | 40.741 | 0.00 | 0.00 | 0.00 | 2.87 |
5428 | 5912 | 5.942826 | CCTCATTTACTCTGCCTTTTCTTCT | 59.057 | 40.000 | 0.00 | 0.00 | 0.00 | 2.85 |
5429 | 5913 | 5.392487 | GCCTCATTTACTCTGCCTTTTCTTC | 60.392 | 44.000 | 0.00 | 0.00 | 0.00 | 2.87 |
5439 | 5924 | 3.703556 | TCTCCTCAGCCTCATTTACTCTG | 59.296 | 47.826 | 0.00 | 0.00 | 0.00 | 3.35 |
5448 | 5933 | 1.679305 | GTCCGTCTCCTCAGCCTCA | 60.679 | 63.158 | 0.00 | 0.00 | 0.00 | 3.86 |
5449 | 5934 | 2.766400 | CGTCCGTCTCCTCAGCCTC | 61.766 | 68.421 | 0.00 | 0.00 | 0.00 | 4.70 |
5451 | 5936 | 4.500116 | GCGTCCGTCTCCTCAGCC | 62.500 | 72.222 | 0.00 | 0.00 | 0.00 | 4.85 |
5453 | 5938 | 1.153939 | CAAGCGTCCGTCTCCTCAG | 60.154 | 63.158 | 0.00 | 0.00 | 0.00 | 3.35 |
5454 | 5939 | 1.176619 | TTCAAGCGTCCGTCTCCTCA | 61.177 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
5463 | 5952 | 1.508088 | CAAGGGCATTCAAGCGTCC | 59.492 | 57.895 | 0.00 | 0.00 | 34.64 | 4.79 |
5530 | 6031 | 1.727022 | GAATGTGTGTGCGCAGTGC | 60.727 | 57.895 | 12.22 | 4.58 | 46.70 | 4.40 |
5541 | 6042 | 1.417517 | TGCTCCAGTGAGTGAATGTGT | 59.582 | 47.619 | 0.00 | 0.00 | 40.95 | 3.72 |
5595 | 6100 | 0.888619 | TACCAACCTGAGTGCGAGAG | 59.111 | 55.000 | 0.00 | 0.00 | 0.00 | 3.20 |
5681 | 6191 | 5.562298 | AAGGTTACTAACTCAAGCCTTGA | 57.438 | 39.130 | 7.00 | 7.00 | 38.17 | 3.02 |
5682 | 6192 | 5.562890 | GCAAAGGTTACTAACTCAAGCCTTG | 60.563 | 44.000 | 0.00 | 0.00 | 35.35 | 3.61 |
5683 | 6193 | 4.519350 | GCAAAGGTTACTAACTCAAGCCTT | 59.481 | 41.667 | 0.00 | 0.00 | 36.53 | 4.35 |
5684 | 6194 | 4.072839 | GCAAAGGTTACTAACTCAAGCCT | 58.927 | 43.478 | 0.00 | 0.00 | 0.00 | 4.58 |
5685 | 6195 | 4.072839 | AGCAAAGGTTACTAACTCAAGCC | 58.927 | 43.478 | 0.00 | 0.00 | 0.00 | 4.35 |
5686 | 6196 | 4.755123 | TGAGCAAAGGTTACTAACTCAAGC | 59.245 | 41.667 | 0.00 | 0.40 | 31.24 | 4.01 |
5687 | 6197 | 6.861065 | TTGAGCAAAGGTTACTAACTCAAG | 57.139 | 37.500 | 0.00 | 0.00 | 36.21 | 3.02 |
5688 | 6198 | 6.861065 | CTTGAGCAAAGGTTACTAACTCAA | 57.139 | 37.500 | 0.00 | 0.00 | 37.53 | 3.02 |
5715 | 6225 | 0.949397 | ATGCATGCATGGCTAACTCG | 59.051 | 50.000 | 31.74 | 0.00 | 35.03 | 4.18 |
5734 | 6244 | 1.067416 | CGCCTCTATAACCTGCGCA | 59.933 | 57.895 | 10.98 | 10.98 | 38.69 | 6.09 |
5735 | 6245 | 1.664965 | CCGCCTCTATAACCTGCGC | 60.665 | 63.158 | 0.00 | 0.00 | 43.59 | 6.09 |
5736 | 6246 | 0.387929 | TTCCGCCTCTATAACCTGCG | 59.612 | 55.000 | 0.00 | 0.00 | 44.47 | 5.18 |
5737 | 6247 | 1.413077 | AGTTCCGCCTCTATAACCTGC | 59.587 | 52.381 | 0.00 | 0.00 | 0.00 | 4.85 |
5738 | 6248 | 3.132289 | TCAAGTTCCGCCTCTATAACCTG | 59.868 | 47.826 | 0.00 | 0.00 | 0.00 | 4.00 |
5739 | 6249 | 3.371965 | TCAAGTTCCGCCTCTATAACCT | 58.628 | 45.455 | 0.00 | 0.00 | 0.00 | 3.50 |
5740 | 6250 | 3.492829 | CCTCAAGTTCCGCCTCTATAACC | 60.493 | 52.174 | 0.00 | 0.00 | 0.00 | 2.85 |
5741 | 6251 | 3.492829 | CCCTCAAGTTCCGCCTCTATAAC | 60.493 | 52.174 | 0.00 | 0.00 | 0.00 | 1.89 |
5742 | 6252 | 2.698797 | CCCTCAAGTTCCGCCTCTATAA | 59.301 | 50.000 | 0.00 | 0.00 | 0.00 | 0.98 |
5743 | 6253 | 2.317040 | CCCTCAAGTTCCGCCTCTATA | 58.683 | 52.381 | 0.00 | 0.00 | 0.00 | 1.31 |
5744 | 6254 | 1.123928 | CCCTCAAGTTCCGCCTCTAT | 58.876 | 55.000 | 0.00 | 0.00 | 0.00 | 1.98 |
5745 | 6255 | 0.976073 | CCCCTCAAGTTCCGCCTCTA | 60.976 | 60.000 | 0.00 | 0.00 | 0.00 | 2.43 |
5746 | 6256 | 2.294078 | CCCCTCAAGTTCCGCCTCT | 61.294 | 63.158 | 0.00 | 0.00 | 0.00 | 3.69 |
5747 | 6257 | 2.269241 | CCCCTCAAGTTCCGCCTC | 59.731 | 66.667 | 0.00 | 0.00 | 0.00 | 4.70 |
5748 | 6258 | 3.330720 | CCCCCTCAAGTTCCGCCT | 61.331 | 66.667 | 0.00 | 0.00 | 0.00 | 5.52 |
5751 | 6261 | 4.778143 | CCGCCCCCTCAAGTTCCG | 62.778 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
5752 | 6262 | 4.426313 | CCCGCCCCCTCAAGTTCC | 62.426 | 72.222 | 0.00 | 0.00 | 0.00 | 3.62 |
5753 | 6263 | 4.426313 | CCCCGCCCCCTCAAGTTC | 62.426 | 72.222 | 0.00 | 0.00 | 0.00 | 3.01 |
5764 | 6274 | 4.475135 | GTCAGAGAAGCCCCCGCC | 62.475 | 72.222 | 0.00 | 0.00 | 34.57 | 6.13 |
5765 | 6275 | 3.394836 | AGTCAGAGAAGCCCCCGC | 61.395 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
5766 | 6276 | 1.544825 | TTCAGTCAGAGAAGCCCCCG | 61.545 | 60.000 | 0.00 | 0.00 | 0.00 | 5.73 |
5767 | 6277 | 0.035915 | GTTCAGTCAGAGAAGCCCCC | 60.036 | 60.000 | 0.00 | 0.00 | 0.00 | 5.40 |
5768 | 6278 | 0.980423 | AGTTCAGTCAGAGAAGCCCC | 59.020 | 55.000 | 0.00 | 0.00 | 0.00 | 5.80 |
5769 | 6279 | 2.037772 | TCAAGTTCAGTCAGAGAAGCCC | 59.962 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
5770 | 6280 | 3.393089 | TCAAGTTCAGTCAGAGAAGCC | 57.607 | 47.619 | 0.00 | 0.00 | 0.00 | 4.35 |
5771 | 6281 | 5.938438 | ATTTCAAGTTCAGTCAGAGAAGC | 57.062 | 39.130 | 0.00 | 0.00 | 0.00 | 3.86 |
5772 | 6282 | 7.226325 | ACAGAATTTCAAGTTCAGTCAGAGAAG | 59.774 | 37.037 | 0.00 | 0.00 | 0.00 | 2.85 |
5773 | 6283 | 7.050377 | ACAGAATTTCAAGTTCAGTCAGAGAA | 58.950 | 34.615 | 0.00 | 0.00 | 0.00 | 2.87 |
5774 | 6284 | 6.586344 | ACAGAATTTCAAGTTCAGTCAGAGA | 58.414 | 36.000 | 0.00 | 0.00 | 0.00 | 3.10 |
5775 | 6285 | 6.857777 | ACAGAATTTCAAGTTCAGTCAGAG | 57.142 | 37.500 | 0.00 | 0.00 | 0.00 | 3.35 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.