Multiple sequence alignment - TraesCS4B01G056900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G056900 chr4B 100.000 5571 0 0 1 5571 46628430 46622860 0.000000e+00 10288.0
1 TraesCS4B01G056900 chr4B 84.314 102 14 2 3812 3911 605276005 605275904 1.280000e-16 99.0
2 TraesCS4B01G056900 chr4B 95.652 46 2 0 3420 3465 28165855 28165900 2.150000e-09 75.0
3 TraesCS4B01G056900 chr4D 94.905 3690 112 28 153 3815 32242534 32238894 0.000000e+00 5703.0
4 TraesCS4B01G056900 chr4D 92.736 1005 27 15 3982 4960 32238824 32237840 0.000000e+00 1410.0
5 TraesCS4B01G056900 chr4D 85.294 102 13 2 3812 3911 478670928 478670827 2.750000e-18 104.0
6 TraesCS4B01G056900 chr4D 93.878 49 2 1 3422 3469 36837917 36837869 7.740000e-09 73.1
7 TraesCS4B01G056900 chr4A 93.356 3748 121 51 122 3813 570460550 570464225 0.000000e+00 5424.0
8 TraesCS4B01G056900 chr4A 89.283 1493 69 36 3982 5436 570464294 570465733 0.000000e+00 1786.0
9 TraesCS4B01G056900 chr4A 87.059 85 11 0 3816 3900 658397591 658397675 4.590000e-16 97.1
10 TraesCS4B01G056900 chr5A 88.298 94 11 0 3816 3909 442712457 442712364 4.560000e-21 113.0
11 TraesCS4B01G056900 chr1A 89.535 86 9 0 3816 3901 82722828 82722743 5.900000e-20 110.0
12 TraesCS4B01G056900 chr5B 85.714 91 13 0 3816 3906 419488999 419489089 4.590000e-16 97.1
13 TraesCS4B01G056900 chr5D 84.000 100 13 3 3811 3909 376272434 376272337 5.940000e-15 93.5
14 TraesCS4B01G056900 chr3B 94.828 58 3 0 6 63 116096500 116096557 2.140000e-14 91.6
15 TraesCS4B01G056900 chr2A 86.207 87 7 1 3815 3901 654916489 654916408 7.690000e-14 89.8
16 TraesCS4B01G056900 chr7B 82.292 96 17 0 3816 3911 724467276 724467371 3.580000e-12 84.2
17 TraesCS4B01G056900 chr3D 97.778 45 1 0 3421 3465 126957703 126957747 1.660000e-10 78.7
18 TraesCS4B01G056900 chr3D 90.000 60 5 1 3413 3471 182028480 182028421 5.980000e-10 76.8
19 TraesCS4B01G056900 chr2D 95.652 46 2 0 3423 3468 120106000 120105955 2.150000e-09 75.0
20 TraesCS4B01G056900 chr2B 97.674 43 1 0 3423 3465 87922741 87922783 2.150000e-09 75.0
21 TraesCS4B01G056900 chr1D 97.674 43 1 0 3423 3465 343363395 343363437 2.150000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G056900 chr4B 46622860 46628430 5570 True 10288.0 10288 100.0000 1 5571 1 chr4B.!!$R1 5570
1 TraesCS4B01G056900 chr4D 32237840 32242534 4694 True 3556.5 5703 93.8205 153 4960 2 chr4D.!!$R3 4807
2 TraesCS4B01G056900 chr4A 570460550 570465733 5183 False 3605.0 5424 91.3195 122 5436 2 chr4A.!!$F2 5314

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
30 31 0.107993 AGTCGTCCGGATCTGTCGTA 60.108 55.0 7.81 0.00 0.00 3.43 F
226 228 0.391661 GCGCCTCTTGTGGATCAGAA 60.392 55.0 0.00 0.00 0.00 3.02 F
1720 1755 0.107456 AAGACCTGTCCACAGTGCTG 59.893 55.0 5.99 0.00 42.27 4.41 F
1883 1923 0.109597 CGGGTCATTTTGCTGTGCTC 60.110 55.0 0.00 0.00 0.00 4.26 F
2165 2205 0.804364 TGATGCATGTTCGCACTTCC 59.196 50.0 2.46 0.00 46.56 3.46 F
2631 2693 1.730501 TGTCTGAAGCAGTAGCATGC 58.269 50.0 10.51 10.51 46.88 4.06 F
4125 4228 1.097547 CCATCAAGAAGGCGCCGATT 61.098 55.0 23.20 11.40 0.00 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1627 1662 0.106469 TGCACCCAAAGCCTGTACAA 60.106 50.000 0.00 0.0 0.00 2.41 R
1883 1923 1.059264 GACTTTGGAATCGAGCGAACG 59.941 52.381 0.00 0.0 0.00 3.95 R
3578 3662 0.249238 CCTGCAGTATCTCCGAGCAC 60.249 60.000 13.81 0.0 0.00 4.40 R
3820 3904 5.221342 ACGCTCTTATATTTCTCCACAGAGG 60.221 44.000 0.00 0.0 40.83 3.69 R
4125 4228 1.377229 GATGGTGAACCCCGTGGAA 59.623 57.895 0.00 0.0 34.81 3.53 R
4286 4401 0.312416 GCACACACGCCCAACATTTA 59.688 50.000 0.00 0.0 0.00 1.40 R
5486 5626 0.108898 GATCATCGCTCTCCATCCCG 60.109 60.000 0.00 0.0 0.00 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.496670 GACATCCAAGTCGTCCGG 57.503 61.111 0.00 0.00 0.00 5.14
21 22 1.888018 GACATCCAAGTCGTCCGGA 59.112 57.895 0.00 0.00 0.00 5.14
22 23 0.460311 GACATCCAAGTCGTCCGGAT 59.540 55.000 7.81 0.00 40.23 4.18
23 24 0.460311 ACATCCAAGTCGTCCGGATC 59.540 55.000 7.81 1.29 37.44 3.36
24 25 0.747255 CATCCAAGTCGTCCGGATCT 59.253 55.000 7.81 4.00 37.44 2.75
25 26 0.747255 ATCCAAGTCGTCCGGATCTG 59.253 55.000 7.81 0.31 34.31 2.90
26 27 0.611062 TCCAAGTCGTCCGGATCTGT 60.611 55.000 7.81 0.00 0.00 3.41
27 28 0.179134 CCAAGTCGTCCGGATCTGTC 60.179 60.000 7.81 0.00 0.00 3.51
28 29 0.523546 CAAGTCGTCCGGATCTGTCG 60.524 60.000 7.81 6.19 0.00 4.35
29 30 0.959372 AAGTCGTCCGGATCTGTCGT 60.959 55.000 7.81 0.00 0.00 4.34
30 31 0.107993 AGTCGTCCGGATCTGTCGTA 60.108 55.000 7.81 0.00 0.00 3.43
31 32 0.729116 GTCGTCCGGATCTGTCGTAA 59.271 55.000 7.81 0.00 0.00 3.18
32 33 1.131126 GTCGTCCGGATCTGTCGTAAA 59.869 52.381 7.81 0.00 0.00 2.01
33 34 1.131126 TCGTCCGGATCTGTCGTAAAC 59.869 52.381 7.81 0.00 0.00 2.01
34 35 1.542544 GTCCGGATCTGTCGTAAACG 58.457 55.000 7.81 0.00 41.45 3.60
50 51 4.910956 CGATCAGTCGGCAGGAAA 57.089 55.556 0.00 0.00 44.00 3.13
51 52 3.369381 CGATCAGTCGGCAGGAAAT 57.631 52.632 0.00 0.00 44.00 2.17
52 53 1.656652 CGATCAGTCGGCAGGAAATT 58.343 50.000 0.00 0.00 44.00 1.82
53 54 2.821546 CGATCAGTCGGCAGGAAATTA 58.178 47.619 0.00 0.00 44.00 1.40
54 55 2.797156 CGATCAGTCGGCAGGAAATTAG 59.203 50.000 0.00 0.00 44.00 1.73
55 56 2.024176 TCAGTCGGCAGGAAATTAGC 57.976 50.000 0.00 0.00 0.00 3.09
56 57 1.555075 TCAGTCGGCAGGAAATTAGCT 59.445 47.619 0.00 0.00 0.00 3.32
57 58 2.027192 TCAGTCGGCAGGAAATTAGCTT 60.027 45.455 0.00 0.00 0.00 3.74
58 59 2.749621 CAGTCGGCAGGAAATTAGCTTT 59.250 45.455 0.00 0.00 0.00 3.51
59 60 3.191371 CAGTCGGCAGGAAATTAGCTTTT 59.809 43.478 0.00 0.00 0.00 2.27
60 61 3.191371 AGTCGGCAGGAAATTAGCTTTTG 59.809 43.478 0.00 0.00 0.00 2.44
63 64 5.233326 CGGCAGGAAATTAGCTTTTGCCT 62.233 47.826 10.44 6.75 43.85 4.75
76 77 4.775664 GCTTTTGCCTGCTTTAAAATGTG 58.224 39.130 0.00 0.00 40.15 3.21
77 78 4.273235 GCTTTTGCCTGCTTTAAAATGTGT 59.727 37.500 0.00 0.00 40.15 3.72
78 79 5.220835 GCTTTTGCCTGCTTTAAAATGTGTT 60.221 36.000 0.00 0.00 40.15 3.32
79 80 6.677675 GCTTTTGCCTGCTTTAAAATGTGTTT 60.678 34.615 0.00 0.00 40.15 2.83
80 81 6.749923 TTTGCCTGCTTTAAAATGTGTTTT 57.250 29.167 0.00 0.00 40.48 2.43
81 82 6.749923 TTGCCTGCTTTAAAATGTGTTTTT 57.250 29.167 0.00 0.00 40.59 1.94
82 83 6.356757 TGCCTGCTTTAAAATGTGTTTTTC 57.643 33.333 0.00 0.00 38.47 2.29
83 84 6.112058 TGCCTGCTTTAAAATGTGTTTTTCT 58.888 32.000 0.00 0.00 38.47 2.52
84 85 6.597280 TGCCTGCTTTAAAATGTGTTTTTCTT 59.403 30.769 0.00 0.00 38.47 2.52
85 86 7.125755 GCCTGCTTTAAAATGTGTTTTTCTTC 58.874 34.615 0.00 0.00 38.47 2.87
86 87 7.011389 GCCTGCTTTAAAATGTGTTTTTCTTCT 59.989 33.333 0.00 0.00 38.47 2.85
87 88 8.542953 CCTGCTTTAAAATGTGTTTTTCTTCTC 58.457 33.333 0.00 0.00 38.47 2.87
88 89 9.305925 CTGCTTTAAAATGTGTTTTTCTTCTCT 57.694 29.630 0.00 0.00 38.47 3.10
89 90 9.086336 TGCTTTAAAATGTGTTTTTCTTCTCTG 57.914 29.630 0.00 0.00 38.47 3.35
90 91 9.087424 GCTTTAAAATGTGTTTTTCTTCTCTGT 57.913 29.630 0.00 0.00 38.47 3.41
95 96 7.497925 AATGTGTTTTTCTTCTCTGTAGTCC 57.502 36.000 0.00 0.00 0.00 3.85
96 97 5.984725 TGTGTTTTTCTTCTCTGTAGTCCA 58.015 37.500 0.00 0.00 0.00 4.02
97 98 6.049149 TGTGTTTTTCTTCTCTGTAGTCCAG 58.951 40.000 0.00 0.00 42.97 3.86
99 100 6.201234 GTGTTTTTCTTCTCTGTAGTCCAGAC 59.799 42.308 0.00 0.00 45.34 3.51
100 101 6.098409 TGTTTTTCTTCTCTGTAGTCCAGACT 59.902 38.462 5.50 5.50 45.34 3.24
101 102 6.732896 TTTTCTTCTCTGTAGTCCAGACTT 57.267 37.500 5.49 0.00 45.34 3.01
102 103 6.732896 TTTCTTCTCTGTAGTCCAGACTTT 57.267 37.500 5.49 0.00 45.34 2.66
103 104 6.732896 TTCTTCTCTGTAGTCCAGACTTTT 57.267 37.500 5.49 0.00 45.34 2.27
104 105 6.732896 TCTTCTCTGTAGTCCAGACTTTTT 57.267 37.500 5.49 0.00 45.34 1.94
105 106 6.516718 TCTTCTCTGTAGTCCAGACTTTTTG 58.483 40.000 5.49 0.00 45.34 2.44
106 107 6.323996 TCTTCTCTGTAGTCCAGACTTTTTGA 59.676 38.462 5.49 0.06 45.34 2.69
107 108 6.479972 TCTCTGTAGTCCAGACTTTTTGAA 57.520 37.500 5.49 0.00 45.34 2.69
108 109 6.281405 TCTCTGTAGTCCAGACTTTTTGAAC 58.719 40.000 5.49 0.00 45.34 3.18
109 110 6.098409 TCTCTGTAGTCCAGACTTTTTGAACT 59.902 38.462 5.49 0.00 45.34 3.01
110 111 6.281405 TCTGTAGTCCAGACTTTTTGAACTC 58.719 40.000 5.49 0.00 45.34 3.01
111 112 6.098409 TCTGTAGTCCAGACTTTTTGAACTCT 59.902 38.462 5.49 0.00 45.34 3.24
112 113 6.650120 TGTAGTCCAGACTTTTTGAACTCTT 58.350 36.000 5.49 0.00 42.54 2.85
113 114 7.110155 TGTAGTCCAGACTTTTTGAACTCTTT 58.890 34.615 5.49 0.00 42.54 2.52
114 115 7.610305 TGTAGTCCAGACTTTTTGAACTCTTTT 59.390 33.333 5.49 0.00 42.54 2.27
115 116 7.468141 AGTCCAGACTTTTTGAACTCTTTTT 57.532 32.000 0.00 0.00 38.83 1.94
170 171 2.413453 GGAGTCAAGCACAGACGATTTC 59.587 50.000 0.00 0.00 40.84 2.17
216 218 2.813061 CCCATTAAATTGCGCCTCTTG 58.187 47.619 4.18 0.00 0.00 3.02
226 228 0.391661 GCGCCTCTTGTGGATCAGAA 60.392 55.000 0.00 0.00 0.00 3.02
296 308 0.679960 CGAAGAAACCACCATCCCCC 60.680 60.000 0.00 0.00 0.00 5.40
297 309 0.704664 GAAGAAACCACCATCCCCCT 59.295 55.000 0.00 0.00 0.00 4.79
298 310 0.704664 AAGAAACCACCATCCCCCTC 59.295 55.000 0.00 0.00 0.00 4.30
299 311 0.477597 AGAAACCACCATCCCCCTCA 60.478 55.000 0.00 0.00 0.00 3.86
544 563 3.414700 CGCTGACGACACCAAGGC 61.415 66.667 0.00 0.00 43.93 4.35
595 617 2.202311 CGCGCGATCGATCCGTAT 60.202 61.111 28.94 0.00 38.10 3.06
614 638 1.215647 GTCTCCCTCGCGTGTCATT 59.784 57.895 5.77 0.00 0.00 2.57
709 733 4.779733 ACCGACCGGCCTCTGGAT 62.780 66.667 8.55 0.00 39.32 3.41
710 734 3.470888 CCGACCGGCCTCTGGATT 61.471 66.667 0.00 0.00 0.00 3.01
825 850 6.211587 TGATCGGAAATCAAAATGCAATCT 57.788 33.333 0.00 0.00 0.00 2.40
909 934 4.397420 TGATTGATTAATCATCCGGTGGG 58.603 43.478 18.61 0.00 45.77 4.61
920 947 0.608035 TCCGGTGGGCTGAATGAAAC 60.608 55.000 0.00 0.00 0.00 2.78
1179 1210 0.395036 TCTCCTTCGAGAGGCTCCTG 60.395 60.000 11.71 3.87 45.87 3.86
1308 1339 6.409695 GGTCAAATTCCATCTCCCTCTGATTA 60.410 42.308 0.00 0.00 0.00 1.75
1312 1343 8.921205 CAAATTCCATCTCCCTCTGATTAATTT 58.079 33.333 0.00 0.00 32.74 1.82
1320 1351 7.217200 TCTCCCTCTGATTAATTTATGAACCG 58.783 38.462 0.00 0.00 0.00 4.44
1331 1362 4.592485 TTTATGAACCGCCATTGTTTGT 57.408 36.364 0.00 0.00 0.00 2.83
1335 1366 1.260297 GAACCGCCATTGTTTGTTTGC 59.740 47.619 0.00 0.00 0.00 3.68
1338 1369 1.261089 CCGCCATTGTTTGTTTGCTTG 59.739 47.619 0.00 0.00 0.00 4.01
1340 1371 2.033832 CGCCATTGTTTGTTTGCTTGTC 60.034 45.455 0.00 0.00 0.00 3.18
1341 1372 2.287644 GCCATTGTTTGTTTGCTTGTCC 59.712 45.455 0.00 0.00 0.00 4.02
1422 1454 3.433615 GCATACGCATCTTCTCCATAACC 59.566 47.826 0.00 0.00 38.36 2.85
1462 1494 2.633488 GAGTGCTCCCTGTGAATTACC 58.367 52.381 0.00 0.00 0.00 2.85
1484 1516 4.095590 CCAAGAAATGGCCCACGT 57.904 55.556 0.00 0.00 43.80 4.49
1561 1593 3.005554 TCAAGCAAGTAAGCTGCATCTC 58.994 45.455 1.02 0.00 45.89 2.75
1623 1658 4.025401 GACACGCGGCCCTTTGTG 62.025 66.667 12.47 3.26 38.28 3.33
1627 1662 2.415426 CGCGGCCCTTTGTGTTTT 59.585 55.556 0.00 0.00 0.00 2.43
1715 1750 2.632996 TCCAAGTAAGACCTGTCCACAG 59.367 50.000 0.00 0.00 43.40 3.66
1717 1752 3.393800 CAAGTAAGACCTGTCCACAGTG 58.606 50.000 5.99 0.00 42.27 3.66
1718 1753 1.344763 AGTAAGACCTGTCCACAGTGC 59.655 52.381 5.99 0.00 42.27 4.40
1719 1754 1.344763 GTAAGACCTGTCCACAGTGCT 59.655 52.381 5.99 0.14 42.27 4.40
1720 1755 0.107456 AAGACCTGTCCACAGTGCTG 59.893 55.000 5.99 0.00 42.27 4.41
1722 1757 0.601311 GACCTGTCCACAGTGCTGTC 60.601 60.000 1.31 2.68 42.83 3.51
1883 1923 0.109597 CGGGTCATTTTGCTGTGCTC 60.110 55.000 0.00 0.00 0.00 4.26
1919 1959 2.141535 AGTCACACAACGAGCTTCTC 57.858 50.000 0.00 0.00 0.00 2.87
2009 2049 4.287238 TCGAAAAGGAAAGTTGCAGAAC 57.713 40.909 0.00 0.00 0.00 3.01
2029 2069 5.241728 AGAACTTTGTGGTAAGAATTCTGCC 59.758 40.000 9.17 14.58 0.00 4.85
2165 2205 0.804364 TGATGCATGTTCGCACTTCC 59.196 50.000 2.46 0.00 46.56 3.46
2224 2264 6.737254 ATGTGTATGCACTACTTTTACACC 57.263 37.500 15.25 5.18 45.44 4.16
2381 2421 9.726232 GAAATTTGTAAGAGTAAAACTTTCGGT 57.274 29.630 0.00 0.00 0.00 4.69
2526 2566 2.633481 AGTAGTCGAGGCTCAAAAGGTT 59.367 45.455 15.95 0.00 0.00 3.50
2536 2576 3.424433 GGCTCAAAAGGTTATCGTTGTCG 60.424 47.826 0.00 0.00 38.55 4.35
2560 2600 9.947669 TCGCTTGATCTAGTTAAAACTACTATC 57.052 33.333 6.05 6.15 40.37 2.08
2630 2692 4.754372 TTTTGTCTGAAGCAGTAGCATG 57.246 40.909 0.00 0.00 45.49 4.06
2631 2693 1.730501 TGTCTGAAGCAGTAGCATGC 58.269 50.000 10.51 10.51 46.88 4.06
2643 2705 5.808042 CAGTAGCATGCTGTCATAAAACT 57.192 39.130 30.42 18.97 44.30 2.66
2644 2706 6.908870 CAGTAGCATGCTGTCATAAAACTA 57.091 37.500 30.42 1.95 44.30 2.24
2668 2730 4.620609 CGATTTCTATGCATTCTCTCCTCG 59.379 45.833 3.54 2.10 0.00 4.63
3071 3135 1.855213 TTTGCATGCAGCTGACGACC 61.855 55.000 21.50 0.00 45.94 4.79
3131 3195 5.536161 CCTGAAAGAAAGAATCCCTTGTTCA 59.464 40.000 0.00 0.00 34.07 3.18
3197 3261 2.267324 GTCCTGCTGCTGTCCCTC 59.733 66.667 0.00 0.00 0.00 4.30
3457 3541 4.579869 ACTGCGACACTTATTTTGGATCT 58.420 39.130 0.00 0.00 0.00 2.75
3465 3549 5.128919 CACTTATTTTGGATCTGAGGGAGG 58.871 45.833 0.00 0.00 0.00 4.30
3478 3562 6.044411 TCTGAGGGAGGACTAAGGATTAAT 57.956 41.667 0.00 0.00 0.00 1.40
3511 3595 3.129638 TGGGTTTGTTAACTGTGTGCTTC 59.870 43.478 7.22 0.00 34.59 3.86
3815 3899 4.038402 GTGTACCGCAACCAGGTATATACT 59.962 45.833 12.54 0.00 44.96 2.12
3816 3900 5.241506 GTGTACCGCAACCAGGTATATACTA 59.758 44.000 12.54 0.00 44.96 1.82
3817 3901 4.861102 ACCGCAACCAGGTATATACTAC 57.139 45.455 12.54 0.00 40.80 2.73
3818 3902 4.477249 ACCGCAACCAGGTATATACTACT 58.523 43.478 12.54 0.00 40.80 2.57
3819 3903 4.522022 ACCGCAACCAGGTATATACTACTC 59.478 45.833 12.54 0.00 40.80 2.59
3820 3904 4.082354 CCGCAACCAGGTATATACTACTCC 60.082 50.000 12.54 0.00 0.00 3.85
3821 3905 4.082354 CGCAACCAGGTATATACTACTCCC 60.082 50.000 12.54 0.00 0.00 4.30
3822 3906 5.085219 GCAACCAGGTATATACTACTCCCT 58.915 45.833 12.54 0.00 0.00 4.20
3823 3907 5.185442 GCAACCAGGTATATACTACTCCCTC 59.815 48.000 12.54 0.00 0.00 4.30
3824 3908 6.553857 CAACCAGGTATATACTACTCCCTCT 58.446 44.000 12.54 0.00 0.00 3.69
3825 3909 6.142259 ACCAGGTATATACTACTCCCTCTG 57.858 45.833 12.54 8.28 0.00 3.35
3826 3910 5.616122 ACCAGGTATATACTACTCCCTCTGT 59.384 44.000 12.54 0.00 0.00 3.41
3827 3911 5.946972 CCAGGTATATACTACTCCCTCTGTG 59.053 48.000 12.54 1.05 0.00 3.66
3828 3912 5.946972 CAGGTATATACTACTCCCTCTGTGG 59.053 48.000 12.54 0.00 0.00 4.17
3829 3913 5.856160 AGGTATATACTACTCCCTCTGTGGA 59.144 44.000 12.54 0.00 38.35 4.02
3841 3925 6.985653 TCCCTCTGTGGAGAAATATAAGAG 57.014 41.667 0.00 0.00 41.86 2.85
3842 3926 5.305644 TCCCTCTGTGGAGAAATATAAGAGC 59.694 44.000 0.00 0.00 41.86 4.09
3843 3927 5.226396 CCTCTGTGGAGAAATATAAGAGCG 58.774 45.833 0.00 0.00 41.86 5.03
3844 3928 5.221342 CCTCTGTGGAGAAATATAAGAGCGT 60.221 44.000 0.00 0.00 41.86 5.07
3845 3929 6.222038 TCTGTGGAGAAATATAAGAGCGTT 57.778 37.500 0.00 0.00 0.00 4.84
3846 3930 6.640518 TCTGTGGAGAAATATAAGAGCGTTT 58.359 36.000 0.00 0.00 0.00 3.60
3847 3931 7.778083 TCTGTGGAGAAATATAAGAGCGTTTA 58.222 34.615 0.00 0.00 0.00 2.01
3848 3932 7.705325 TCTGTGGAGAAATATAAGAGCGTTTAC 59.295 37.037 0.00 0.00 0.00 2.01
3849 3933 7.553334 TGTGGAGAAATATAAGAGCGTTTACT 58.447 34.615 0.00 0.00 0.00 2.24
3850 3934 8.038944 TGTGGAGAAATATAAGAGCGTTTACTT 58.961 33.333 0.00 0.00 0.00 2.24
3851 3935 8.541312 GTGGAGAAATATAAGAGCGTTTACTTC 58.459 37.037 0.00 0.00 0.00 3.01
3852 3936 8.255206 TGGAGAAATATAAGAGCGTTTACTTCA 58.745 33.333 0.00 0.00 0.00 3.02
3853 3937 8.541312 GGAGAAATATAAGAGCGTTTACTTCAC 58.459 37.037 0.00 0.00 0.00 3.18
3854 3938 9.303537 GAGAAATATAAGAGCGTTTACTTCACT 57.696 33.333 0.00 0.00 0.00 3.41
3861 3945 7.870588 AAGAGCGTTTACTTCACTACTTTAG 57.129 36.000 0.00 0.00 0.00 1.85
3862 3946 6.979465 AGAGCGTTTACTTCACTACTTTAGT 58.021 36.000 0.00 0.00 40.28 2.24
3877 3961 8.667592 ACTACTTTAGTGATCTAAACCCTCTT 57.332 34.615 0.00 0.00 40.05 2.85
3878 3962 9.765295 ACTACTTTAGTGATCTAAACCCTCTTA 57.235 33.333 0.00 0.00 40.05 2.10
3894 3978 7.996758 ACCCTCTTATATTTCTTTCCAGAGA 57.003 36.000 0.00 0.00 0.00 3.10
3895 3979 8.028652 ACCCTCTTATATTTCTTTCCAGAGAG 57.971 38.462 0.00 0.00 0.00 3.20
3898 3982 8.923270 CCTCTTATATTTCTTTCCAGAGAGAGT 58.077 37.037 0.00 0.00 32.02 3.24
3935 4019 9.903682 AACTTGATCAGTTTGTTGATTCATTAG 57.096 29.630 0.00 0.00 43.89 1.73
3936 4020 8.517878 ACTTGATCAGTTTGTTGATTCATTAGG 58.482 33.333 0.00 0.00 37.90 2.69
3937 4021 8.634335 TTGATCAGTTTGTTGATTCATTAGGA 57.366 30.769 0.00 0.00 37.90 2.94
3938 4022 8.272545 TGATCAGTTTGTTGATTCATTAGGAG 57.727 34.615 0.00 0.00 37.90 3.69
3939 4023 7.337689 TGATCAGTTTGTTGATTCATTAGGAGG 59.662 37.037 0.00 0.00 37.90 4.30
3940 4024 6.778821 TCAGTTTGTTGATTCATTAGGAGGA 58.221 36.000 0.00 0.00 0.00 3.71
3941 4025 7.405292 TCAGTTTGTTGATTCATTAGGAGGAT 58.595 34.615 0.00 0.00 0.00 3.24
3942 4026 7.554118 TCAGTTTGTTGATTCATTAGGAGGATC 59.446 37.037 0.00 0.00 0.00 3.36
3943 4027 7.555554 CAGTTTGTTGATTCATTAGGAGGATCT 59.444 37.037 0.00 0.00 33.73 2.75
3944 4028 8.112183 AGTTTGTTGATTCATTAGGAGGATCTT 58.888 33.333 0.00 0.00 33.73 2.40
3945 4029 8.401709 GTTTGTTGATTCATTAGGAGGATCTTC 58.598 37.037 0.00 0.00 33.73 2.87
3946 4030 6.595682 TGTTGATTCATTAGGAGGATCTTCC 58.404 40.000 15.96 15.96 37.52 3.46
3961 4045 3.543680 TCTTCCTTCCGTTCATCCATC 57.456 47.619 0.00 0.00 0.00 3.51
3965 4049 3.343617 TCCTTCCGTTCATCCATCAAAC 58.656 45.455 0.00 0.00 0.00 2.93
3970 4058 2.482336 CCGTTCATCCATCAAACGAACA 59.518 45.455 8.30 0.00 46.42 3.18
3971 4059 3.058570 CCGTTCATCCATCAAACGAACAA 60.059 43.478 8.30 0.00 46.42 2.83
3972 4060 4.379394 CCGTTCATCCATCAAACGAACAAT 60.379 41.667 8.30 0.00 46.42 2.71
3974 4062 5.390885 CGTTCATCCATCAAACGAACAATCT 60.391 40.000 0.89 0.00 46.42 2.40
3975 4063 6.381801 GTTCATCCATCAAACGAACAATCTT 58.618 36.000 0.00 0.00 36.75 2.40
3978 4066 7.083858 TCATCCATCAAACGAACAATCTTTTC 58.916 34.615 0.00 0.00 0.00 2.29
3980 4068 7.737972 TCCATCAAACGAACAATCTTTTCTA 57.262 32.000 0.00 0.00 0.00 2.10
4098 4201 2.107750 CAGATCATCGCGCTGGGT 59.892 61.111 10.42 0.00 0.00 4.51
4125 4228 1.097547 CCATCAAGAAGGCGCCGATT 61.098 55.000 23.20 11.40 0.00 3.34
4286 4401 9.500785 TTCTTTTCCTCTTTGAAAACAAAATGT 57.499 25.926 0.00 0.00 38.84 2.71
4339 4465 1.387539 TCATCGAGCTGGACAGAGAG 58.612 55.000 0.00 0.00 0.00 3.20
4612 4738 5.183140 TCTCTTTTATTTGTGCCTTGGCTAC 59.817 40.000 13.18 9.66 0.00 3.58
4614 4740 1.745232 TATTTGTGCCTTGGCTACCG 58.255 50.000 13.18 0.00 0.00 4.02
4697 4828 1.468736 GGTTAGCCCAAGTAGACGACG 60.469 57.143 0.00 0.00 0.00 5.12
4709 4840 2.672188 AGACGACGACGATGATGATC 57.328 50.000 15.32 0.00 42.66 2.92
4745 4876 3.914426 AACTGGCTTGTTCGATCCTAT 57.086 42.857 0.00 0.00 0.00 2.57
4746 4877 3.185246 ACTGGCTTGTTCGATCCTATG 57.815 47.619 0.00 0.00 0.00 2.23
4747 4878 2.501723 ACTGGCTTGTTCGATCCTATGT 59.498 45.455 0.00 0.00 0.00 2.29
4748 4879 3.704566 ACTGGCTTGTTCGATCCTATGTA 59.295 43.478 0.00 0.00 0.00 2.29
4749 4880 4.051922 CTGGCTTGTTCGATCCTATGTAC 58.948 47.826 0.00 0.00 0.00 2.90
4813 4945 6.763135 TGCTAACTGTGCAGATTAATTAGGAG 59.237 38.462 6.17 0.00 35.31 3.69
4814 4946 6.203723 GCTAACTGTGCAGATTAATTAGGAGG 59.796 42.308 6.17 0.00 0.00 4.30
4840 4972 3.751175 TGGCTTACGATTTCACCTTCTTG 59.249 43.478 0.00 0.00 0.00 3.02
4841 4973 4.000988 GGCTTACGATTTCACCTTCTTGA 58.999 43.478 0.00 0.00 0.00 3.02
4848 4980 6.053005 ACGATTTCACCTTCTTGAGTTAACA 58.947 36.000 8.61 0.00 0.00 2.41
4849 4981 6.018180 ACGATTTCACCTTCTTGAGTTAACAC 60.018 38.462 8.61 1.71 0.00 3.32
4850 4982 6.018262 CGATTTCACCTTCTTGAGTTAACACA 60.018 38.462 8.61 4.83 0.00 3.72
4853 4985 7.639113 TTCACCTTCTTGAGTTAACACAAAT 57.361 32.000 17.38 1.58 0.00 2.32
4854 4986 7.026631 TCACCTTCTTGAGTTAACACAAATG 57.973 36.000 17.38 8.74 0.00 2.32
4855 4987 6.826231 TCACCTTCTTGAGTTAACACAAATGA 59.174 34.615 17.38 10.62 0.00 2.57
4856 4988 7.338196 TCACCTTCTTGAGTTAACACAAATGAA 59.662 33.333 17.38 15.99 0.00 2.57
4860 4992 9.734620 CTTCTTGAGTTAACACAAATGAAATGA 57.265 29.630 17.38 8.24 0.00 2.57
4862 4994 9.681692 TCTTGAGTTAACACAAATGAAATGATG 57.318 29.630 17.38 4.55 0.00 3.07
4863 4995 8.815141 TTGAGTTAACACAAATGAAATGATGG 57.185 30.769 14.95 0.00 0.00 3.51
4864 4996 7.377398 TGAGTTAACACAAATGAAATGATGGG 58.623 34.615 8.61 0.00 0.00 4.00
4865 4997 7.232330 TGAGTTAACACAAATGAAATGATGGGA 59.768 33.333 8.61 0.00 0.00 4.37
4940 5075 5.304686 TCGCAAATATAGGGATGAAACCT 57.695 39.130 0.00 0.00 42.15 3.50
4952 5087 3.751175 GGATGAAACCTGTGTGAATTCGA 59.249 43.478 0.04 0.00 0.00 3.71
4956 5091 5.518812 TGAAACCTGTGTGAATTCGATTTG 58.481 37.500 0.04 0.00 0.00 2.32
4960 5095 4.695455 ACCTGTGTGAATTCGATTTGGTAG 59.305 41.667 9.50 0.00 0.00 3.18
4961 5096 4.437390 CCTGTGTGAATTCGATTTGGTAGC 60.437 45.833 0.04 0.00 0.00 3.58
4962 5097 4.068599 TGTGTGAATTCGATTTGGTAGCA 58.931 39.130 0.04 0.00 0.00 3.49
4964 5099 4.154195 GTGTGAATTCGATTTGGTAGCAGT 59.846 41.667 0.04 0.00 0.00 4.40
4965 5100 4.759693 TGTGAATTCGATTTGGTAGCAGTT 59.240 37.500 0.04 0.00 0.00 3.16
4966 5101 5.088739 GTGAATTCGATTTGGTAGCAGTTG 58.911 41.667 0.04 0.00 0.00 3.16
4969 5104 3.627395 TCGATTTGGTAGCAGTTGGAT 57.373 42.857 0.00 0.00 0.00 3.41
4970 5105 3.270027 TCGATTTGGTAGCAGTTGGATG 58.730 45.455 0.00 0.00 0.00 3.51
4979 5114 1.089481 GCAGTTGGATGCGGATTCGA 61.089 55.000 0.00 0.00 39.00 3.71
4982 5117 3.130633 CAGTTGGATGCGGATTCGAATA 58.869 45.455 11.38 0.00 34.18 1.75
4984 5119 4.214119 CAGTTGGATGCGGATTCGAATATT 59.786 41.667 11.38 0.00 34.18 1.28
5003 5143 1.803334 TGGTTTTGTCGGATTCGGAG 58.197 50.000 0.00 0.00 36.95 4.63
5026 5166 3.230976 TGAGTAACAGCCTCAAGTCAGA 58.769 45.455 0.00 0.00 36.07 3.27
5030 5170 1.871080 ACAGCCTCAAGTCAGAAACG 58.129 50.000 0.00 0.00 0.00 3.60
5037 5177 4.268884 GCCTCAAGTCAGAAACGACATATC 59.731 45.833 0.00 0.00 38.43 1.63
5066 5206 5.471257 TGCATACACGGCGAACATATTATA 58.529 37.500 16.62 0.00 0.00 0.98
5100 5240 1.877443 GGCACAACTTAACCGATGTGT 59.123 47.619 6.61 0.00 43.82 3.72
5101 5241 2.292292 GGCACAACTTAACCGATGTGTT 59.708 45.455 6.61 0.00 43.82 3.32
5105 5245 4.967575 CACAACTTAACCGATGTGTTCAAC 59.032 41.667 0.00 0.00 38.62 3.18
5107 5247 5.355910 ACAACTTAACCGATGTGTTCAACTT 59.644 36.000 0.00 0.00 0.00 2.66
5108 5248 5.668558 ACTTAACCGATGTGTTCAACTTC 57.331 39.130 0.00 0.00 0.00 3.01
5124 5264 7.335673 TGTTCAACTTCACATCTTACAAGACAA 59.664 33.333 0.00 0.00 37.98 3.18
5127 5267 5.680619 ACTTCACATCTTACAAGACAACCA 58.319 37.500 0.00 0.00 37.98 3.67
5141 5281 8.044060 ACAAGACAACCATTATGTACAGAATG 57.956 34.615 28.39 28.39 46.00 2.67
5147 5287 5.260424 ACCATTATGTACAGAATGCAACCA 58.740 37.500 29.45 0.00 42.53 3.67
5226 5366 4.858935 ACTTATGCACATTCAACACACAC 58.141 39.130 0.00 0.00 0.00 3.82
5258 5398 4.157840 GGAACATAGGAAGCAAAAATCCGT 59.842 41.667 0.00 0.00 40.78 4.69
5261 5401 7.404671 AACATAGGAAGCAAAAATCCGTAAT 57.595 32.000 0.00 0.00 40.78 1.89
5262 5402 6.795399 ACATAGGAAGCAAAAATCCGTAATG 58.205 36.000 0.00 0.00 40.78 1.90
5280 5420 6.348132 CCGTAATGAAACACTAACAAGCATGA 60.348 38.462 0.00 0.00 0.00 3.07
5283 5423 3.253188 TGAAACACTAACAAGCATGAGCC 59.747 43.478 0.00 0.00 43.56 4.70
5288 5428 3.311871 CACTAACAAGCATGAGCCATCTC 59.688 47.826 0.00 0.00 43.56 2.75
5438 5578 7.724305 ATAATACTGTAGCAAAATACCACCG 57.276 36.000 0.00 0.00 0.00 4.94
5439 5579 2.081462 ACTGTAGCAAAATACCACCGC 58.919 47.619 0.00 0.00 0.00 5.68
5440 5580 1.400494 CTGTAGCAAAATACCACCGCC 59.600 52.381 0.00 0.00 0.00 6.13
5441 5581 1.271434 TGTAGCAAAATACCACCGCCA 60.271 47.619 0.00 0.00 0.00 5.69
5442 5582 2.021457 GTAGCAAAATACCACCGCCAT 58.979 47.619 0.00 0.00 0.00 4.40
5443 5583 0.817013 AGCAAAATACCACCGCCATG 59.183 50.000 0.00 0.00 0.00 3.66
5444 5584 0.179113 GCAAAATACCACCGCCATGG 60.179 55.000 7.63 7.63 46.10 3.66
5445 5585 1.468985 CAAAATACCACCGCCATGGA 58.531 50.000 18.40 0.00 43.02 3.41
5446 5586 1.821753 CAAAATACCACCGCCATGGAA 59.178 47.619 18.40 0.00 43.02 3.53
5447 5587 1.762708 AAATACCACCGCCATGGAAG 58.237 50.000 18.40 8.04 43.02 3.46
5448 5588 0.751643 AATACCACCGCCATGGAAGC 60.752 55.000 18.40 0.00 43.02 3.86
5449 5589 1.635817 ATACCACCGCCATGGAAGCT 61.636 55.000 18.40 0.00 43.02 3.74
5450 5590 1.847798 TACCACCGCCATGGAAGCTT 61.848 55.000 18.40 0.00 43.02 3.74
5451 5591 1.077787 CCACCGCCATGGAAGCTTA 60.078 57.895 18.40 0.00 43.02 3.09
5452 5592 0.679640 CCACCGCCATGGAAGCTTAA 60.680 55.000 18.40 0.00 43.02 1.85
5453 5593 1.392589 CACCGCCATGGAAGCTTAAT 58.607 50.000 18.40 0.00 42.00 1.40
5454 5594 1.750778 CACCGCCATGGAAGCTTAATT 59.249 47.619 18.40 0.00 42.00 1.40
5455 5595 1.750778 ACCGCCATGGAAGCTTAATTG 59.249 47.619 18.40 0.00 42.00 2.32
5456 5596 2.023673 CCGCCATGGAAGCTTAATTGA 58.976 47.619 18.40 0.00 42.00 2.57
5457 5597 2.223572 CCGCCATGGAAGCTTAATTGAC 60.224 50.000 18.40 0.00 42.00 3.18
5458 5598 2.423185 CGCCATGGAAGCTTAATTGACA 59.577 45.455 18.40 0.00 0.00 3.58
5459 5599 3.731867 CGCCATGGAAGCTTAATTGACAC 60.732 47.826 18.40 0.00 0.00 3.67
5460 5600 3.193267 GCCATGGAAGCTTAATTGACACA 59.807 43.478 18.40 0.00 0.00 3.72
5461 5601 4.676196 GCCATGGAAGCTTAATTGACACAG 60.676 45.833 18.40 0.00 0.00 3.66
5462 5602 4.460382 CCATGGAAGCTTAATTGACACAGT 59.540 41.667 5.56 0.00 0.00 3.55
5463 5603 5.647658 CCATGGAAGCTTAATTGACACAGTA 59.352 40.000 5.56 0.00 0.00 2.74
5464 5604 6.183360 CCATGGAAGCTTAATTGACACAGTAG 60.183 42.308 5.56 0.00 0.00 2.57
5465 5605 5.865085 TGGAAGCTTAATTGACACAGTAGT 58.135 37.500 0.00 0.00 0.00 2.73
5478 5618 3.728845 CACAGTAGTGTTTACTGGTGCT 58.271 45.455 16.18 0.00 46.70 4.40
5479 5619 3.494626 CACAGTAGTGTTTACTGGTGCTG 59.505 47.826 16.18 4.46 46.70 4.41
5480 5620 2.480419 CAGTAGTGTTTACTGGTGCTGC 59.520 50.000 6.46 0.00 40.76 5.25
5481 5621 2.104111 AGTAGTGTTTACTGGTGCTGCA 59.896 45.455 0.00 0.00 37.78 4.41
5482 5622 2.276732 AGTGTTTACTGGTGCTGCAT 57.723 45.000 5.27 0.00 35.34 3.96
5483 5623 2.154462 AGTGTTTACTGGTGCTGCATC 58.846 47.619 5.27 5.56 35.34 3.91
5484 5624 1.200020 GTGTTTACTGGTGCTGCATCC 59.800 52.381 10.91 11.82 0.00 3.51
5485 5625 0.811281 GTTTACTGGTGCTGCATCCC 59.189 55.000 10.91 6.38 0.00 3.85
5486 5626 0.323360 TTTACTGGTGCTGCATCCCC 60.323 55.000 10.91 5.60 0.00 4.81
5487 5627 2.535485 TTACTGGTGCTGCATCCCCG 62.535 60.000 10.91 4.85 0.00 5.73
5491 5631 4.195334 GTGCTGCATCCCCGGGAT 62.195 66.667 26.32 13.83 44.21 3.85
5498 5638 2.527875 ATCCCCGGGATGGAGAGC 60.528 66.667 26.32 0.00 41.43 4.09
5501 5641 2.919856 CCCGGGATGGAGAGCGAT 60.920 66.667 18.48 0.00 42.00 4.58
5502 5642 2.341543 CCGGGATGGAGAGCGATG 59.658 66.667 0.00 0.00 42.00 3.84
5503 5643 2.203082 CCGGGATGGAGAGCGATGA 61.203 63.158 0.00 0.00 42.00 2.92
5504 5644 1.539560 CCGGGATGGAGAGCGATGAT 61.540 60.000 0.00 0.00 42.00 2.45
5505 5645 0.108898 CGGGATGGAGAGCGATGATC 60.109 60.000 0.00 0.00 0.00 2.92
5506 5646 0.108898 GGGATGGAGAGCGATGATCG 60.109 60.000 11.02 11.02 43.89 3.69
5507 5647 0.884514 GGATGGAGAGCGATGATCGA 59.115 55.000 20.25 0.00 43.74 3.59
5508 5648 1.270826 GGATGGAGAGCGATGATCGAA 59.729 52.381 20.25 0.00 43.74 3.71
5509 5649 2.094286 GGATGGAGAGCGATGATCGAAT 60.094 50.000 20.25 5.81 43.74 3.34
5510 5650 3.129462 GGATGGAGAGCGATGATCGAATA 59.871 47.826 20.25 0.00 43.74 1.75
5511 5651 4.202101 GGATGGAGAGCGATGATCGAATAT 60.202 45.833 20.25 2.97 43.74 1.28
5512 5652 4.102035 TGGAGAGCGATGATCGAATATG 57.898 45.455 20.25 0.00 43.74 1.78
5513 5653 3.119352 TGGAGAGCGATGATCGAATATGG 60.119 47.826 20.25 0.00 43.74 2.74
5514 5654 2.857152 GAGAGCGATGATCGAATATGGC 59.143 50.000 20.25 10.03 43.74 4.40
5515 5655 1.929836 GAGCGATGATCGAATATGGCC 59.070 52.381 20.25 0.00 43.74 5.36
5516 5656 1.552337 AGCGATGATCGAATATGGCCT 59.448 47.619 20.25 0.00 43.74 5.19
5517 5657 2.027745 AGCGATGATCGAATATGGCCTT 60.028 45.455 20.25 0.00 43.74 4.35
5518 5658 2.094894 GCGATGATCGAATATGGCCTTG 59.905 50.000 20.25 0.00 43.74 3.61
5519 5659 3.588955 CGATGATCGAATATGGCCTTGA 58.411 45.455 9.62 0.00 43.74 3.02
5520 5660 4.186926 CGATGATCGAATATGGCCTTGAT 58.813 43.478 9.62 0.00 43.74 2.57
5521 5661 4.269603 CGATGATCGAATATGGCCTTGATC 59.730 45.833 9.62 8.63 43.74 2.92
5522 5662 4.897509 TGATCGAATATGGCCTTGATCT 57.102 40.909 16.87 0.00 34.71 2.75
5523 5663 5.233083 TGATCGAATATGGCCTTGATCTT 57.767 39.130 16.87 0.00 34.71 2.40
5524 5664 5.240891 TGATCGAATATGGCCTTGATCTTC 58.759 41.667 16.87 5.82 34.71 2.87
5525 5665 4.963318 TCGAATATGGCCTTGATCTTCT 57.037 40.909 3.32 0.00 0.00 2.85
5526 5666 4.635223 TCGAATATGGCCTTGATCTTCTG 58.365 43.478 3.32 0.00 0.00 3.02
5527 5667 4.344968 TCGAATATGGCCTTGATCTTCTGA 59.655 41.667 3.32 0.00 0.00 3.27
5528 5668 5.059161 CGAATATGGCCTTGATCTTCTGAA 58.941 41.667 3.32 0.00 0.00 3.02
5529 5669 5.178996 CGAATATGGCCTTGATCTTCTGAAG 59.821 44.000 11.18 11.18 0.00 3.02
5530 5670 5.901413 ATATGGCCTTGATCTTCTGAAGA 57.099 39.130 21.32 21.32 42.69 2.87
5531 5671 4.581309 ATGGCCTTGATCTTCTGAAGAA 57.419 40.909 22.68 5.97 41.63 2.52
5532 5672 4.371624 TGGCCTTGATCTTCTGAAGAAA 57.628 40.909 22.68 13.04 41.63 2.52
5533 5673 4.330250 TGGCCTTGATCTTCTGAAGAAAG 58.670 43.478 22.68 20.27 41.63 2.62
5534 5674 3.693578 GGCCTTGATCTTCTGAAGAAAGG 59.306 47.826 29.85 29.85 43.63 3.11
5535 5675 4.566488 GGCCTTGATCTTCTGAAGAAAGGA 60.566 45.833 34.30 18.54 43.54 3.36
5536 5676 5.006386 GCCTTGATCTTCTGAAGAAAGGAA 58.994 41.667 34.30 20.36 43.54 3.36
5537 5677 5.651576 GCCTTGATCTTCTGAAGAAAGGAAT 59.348 40.000 34.30 17.63 43.54 3.01
5538 5678 6.152492 GCCTTGATCTTCTGAAGAAAGGAATT 59.848 38.462 34.30 17.06 43.54 2.17
5539 5679 7.337942 GCCTTGATCTTCTGAAGAAAGGAATTA 59.662 37.037 34.30 13.23 43.54 1.40
5540 5680 9.406113 CCTTGATCTTCTGAAGAAAGGAATTAT 57.594 33.333 30.16 12.57 43.54 1.28
5547 5687 9.282569 CTTCTGAAGAAAGGAATTATATGGAGG 57.717 37.037 12.01 0.00 33.07 4.30
5548 5688 8.567198 TCTGAAGAAAGGAATTATATGGAGGA 57.433 34.615 0.00 0.00 0.00 3.71
5549 5689 9.175577 TCTGAAGAAAGGAATTATATGGAGGAT 57.824 33.333 0.00 0.00 0.00 3.24
5552 5692 9.898152 GAAGAAAGGAATTATATGGAGGATAGG 57.102 37.037 0.00 0.00 0.00 2.57
5553 5693 9.635284 AAGAAAGGAATTATATGGAGGATAGGA 57.365 33.333 0.00 0.00 0.00 2.94
5554 5694 9.278011 AGAAAGGAATTATATGGAGGATAGGAG 57.722 37.037 0.00 0.00 0.00 3.69
5555 5695 9.273137 GAAAGGAATTATATGGAGGATAGGAGA 57.727 37.037 0.00 0.00 0.00 3.71
5556 5696 9.811208 AAAGGAATTATATGGAGGATAGGAGAT 57.189 33.333 0.00 0.00 0.00 2.75
5557 5697 8.795899 AGGAATTATATGGAGGATAGGAGATG 57.204 38.462 0.00 0.00 0.00 2.90
5558 5698 7.793709 AGGAATTATATGGAGGATAGGAGATGG 59.206 40.741 0.00 0.00 0.00 3.51
5559 5699 7.017056 GGAATTATATGGAGGATAGGAGATGGG 59.983 44.444 0.00 0.00 0.00 4.00
5560 5700 2.657355 ATGGAGGATAGGAGATGGGG 57.343 55.000 0.00 0.00 0.00 4.96
5561 5701 1.557681 TGGAGGATAGGAGATGGGGA 58.442 55.000 0.00 0.00 0.00 4.81
5562 5702 2.093343 TGGAGGATAGGAGATGGGGAT 58.907 52.381 0.00 0.00 0.00 3.85
5563 5703 3.287018 TGGAGGATAGGAGATGGGGATA 58.713 50.000 0.00 0.00 0.00 2.59
5564 5704 3.672645 TGGAGGATAGGAGATGGGGATAA 59.327 47.826 0.00 0.00 0.00 1.75
5565 5705 4.301486 TGGAGGATAGGAGATGGGGATAAT 59.699 45.833 0.00 0.00 0.00 1.28
5566 5706 4.657969 GGAGGATAGGAGATGGGGATAATG 59.342 50.000 0.00 0.00 0.00 1.90
5567 5707 5.284582 GAGGATAGGAGATGGGGATAATGT 58.715 45.833 0.00 0.00 0.00 2.71
5568 5708 5.035556 AGGATAGGAGATGGGGATAATGTG 58.964 45.833 0.00 0.00 0.00 3.21
5569 5709 4.384647 GGATAGGAGATGGGGATAATGTGC 60.385 50.000 0.00 0.00 0.00 4.57
5570 5710 1.349026 AGGAGATGGGGATAATGTGCG 59.651 52.381 0.00 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.460311 ATCCGGACGACTTGGATGTC 59.540 55.000 6.12 0.00 40.91 3.06
5 6 0.747255 AGATCCGGACGACTTGGATG 59.253 55.000 6.12 0.00 42.46 3.51
6 7 0.747255 CAGATCCGGACGACTTGGAT 59.253 55.000 6.12 10.67 45.02 3.41
7 8 0.611062 ACAGATCCGGACGACTTGGA 60.611 55.000 6.12 0.00 35.96 3.53
8 9 0.179134 GACAGATCCGGACGACTTGG 60.179 60.000 6.12 0.00 0.00 3.61
9 10 0.523546 CGACAGATCCGGACGACTTG 60.524 60.000 6.12 3.47 0.00 3.16
10 11 0.959372 ACGACAGATCCGGACGACTT 60.959 55.000 17.20 0.00 0.00 3.01
11 12 0.107993 TACGACAGATCCGGACGACT 60.108 55.000 17.20 9.73 0.00 4.18
12 13 0.729116 TTACGACAGATCCGGACGAC 59.271 55.000 17.20 7.61 0.00 4.34
13 14 1.131126 GTTTACGACAGATCCGGACGA 59.869 52.381 17.20 0.00 0.00 4.20
14 15 1.542544 GTTTACGACAGATCCGGACG 58.457 55.000 6.12 8.32 0.00 4.79
15 16 1.131126 TCGTTTACGACAGATCCGGAC 59.869 52.381 6.12 0.11 44.22 4.79
16 17 1.452110 TCGTTTACGACAGATCCGGA 58.548 50.000 6.61 6.61 44.22 5.14
34 35 2.545946 GCTAATTTCCTGCCGACTGATC 59.454 50.000 0.00 0.00 0.00 2.92
35 36 2.171448 AGCTAATTTCCTGCCGACTGAT 59.829 45.455 0.00 0.00 0.00 2.90
36 37 1.555075 AGCTAATTTCCTGCCGACTGA 59.445 47.619 0.00 0.00 0.00 3.41
37 38 2.029838 AGCTAATTTCCTGCCGACTG 57.970 50.000 0.00 0.00 0.00 3.51
38 39 2.789409 AAGCTAATTTCCTGCCGACT 57.211 45.000 0.00 0.00 0.00 4.18
39 40 3.501950 CAAAAGCTAATTTCCTGCCGAC 58.498 45.455 0.00 0.00 0.00 4.79
40 41 2.094752 GCAAAAGCTAATTTCCTGCCGA 60.095 45.455 0.00 0.00 31.26 5.54
41 42 2.262211 GCAAAAGCTAATTTCCTGCCG 58.738 47.619 0.00 0.00 31.26 5.69
42 43 2.621338 GGCAAAAGCTAATTTCCTGCC 58.379 47.619 0.00 0.00 43.84 4.85
43 44 3.256558 CAGGCAAAAGCTAATTTCCTGC 58.743 45.455 14.74 2.39 35.00 4.85
44 45 3.056322 AGCAGGCAAAAGCTAATTTCCTG 60.056 43.478 19.78 19.78 39.78 3.86
45 46 3.168292 AGCAGGCAAAAGCTAATTTCCT 58.832 40.909 0.00 0.00 39.78 3.36
46 47 3.599730 AGCAGGCAAAAGCTAATTTCC 57.400 42.857 0.00 0.00 39.78 3.13
47 48 7.420184 TTTAAAGCAGGCAAAAGCTAATTTC 57.580 32.000 0.00 0.00 40.90 2.17
48 49 7.800155 TTTTAAAGCAGGCAAAAGCTAATTT 57.200 28.000 0.00 0.00 40.90 1.82
49 50 7.445096 ACATTTTAAAGCAGGCAAAAGCTAATT 59.555 29.630 0.00 0.00 40.90 1.40
50 51 6.936335 ACATTTTAAAGCAGGCAAAAGCTAAT 59.064 30.769 0.00 0.00 40.90 1.73
51 52 6.202570 CACATTTTAAAGCAGGCAAAAGCTAA 59.797 34.615 0.00 0.00 40.90 3.09
52 53 5.695816 CACATTTTAAAGCAGGCAAAAGCTA 59.304 36.000 0.00 0.00 40.90 3.32
53 54 4.512571 CACATTTTAAAGCAGGCAAAAGCT 59.487 37.500 0.00 0.00 44.31 3.74
54 55 4.273235 ACACATTTTAAAGCAGGCAAAAGC 59.727 37.500 0.00 0.00 0.00 3.51
55 56 5.989551 ACACATTTTAAAGCAGGCAAAAG 57.010 34.783 0.00 0.00 0.00 2.27
56 57 6.749923 AAACACATTTTAAAGCAGGCAAAA 57.250 29.167 0.00 0.00 0.00 2.44
57 58 6.749923 AAAACACATTTTAAAGCAGGCAAA 57.250 29.167 0.00 0.00 36.22 3.68
58 59 6.597280 AGAAAAACACATTTTAAAGCAGGCAA 59.403 30.769 0.00 0.00 41.27 4.52
59 60 6.112058 AGAAAAACACATTTTAAAGCAGGCA 58.888 32.000 0.00 0.00 41.27 4.75
60 61 6.603237 AGAAAAACACATTTTAAAGCAGGC 57.397 33.333 0.00 0.00 41.27 4.85
61 62 8.424274 AGAAGAAAAACACATTTTAAAGCAGG 57.576 30.769 0.00 0.00 41.27 4.85
62 63 9.305925 AGAGAAGAAAAACACATTTTAAAGCAG 57.694 29.630 0.00 0.00 41.27 4.24
63 64 9.086336 CAGAGAAGAAAAACACATTTTAAAGCA 57.914 29.630 0.00 0.00 41.27 3.91
64 65 9.087424 ACAGAGAAGAAAAACACATTTTAAAGC 57.913 29.630 0.00 0.00 41.27 3.51
69 70 8.406297 GGACTACAGAGAAGAAAAACACATTTT 58.594 33.333 0.00 0.00 43.85 1.82
70 71 7.556275 TGGACTACAGAGAAGAAAAACACATTT 59.444 33.333 0.00 0.00 0.00 2.32
71 72 7.054124 TGGACTACAGAGAAGAAAAACACATT 58.946 34.615 0.00 0.00 0.00 2.71
72 73 6.591935 TGGACTACAGAGAAGAAAAACACAT 58.408 36.000 0.00 0.00 0.00 3.21
73 74 5.984725 TGGACTACAGAGAAGAAAAACACA 58.015 37.500 0.00 0.00 0.00 3.72
87 88 6.763610 AAGAGTTCAAAAAGTCTGGACTACAG 59.236 38.462 3.54 0.00 43.05 2.74
88 89 6.235231 AGAGTTCAAAAAGTCTGGACTACA 57.765 37.500 3.54 0.00 42.40 2.74
89 90 7.555306 AAAGAGTTCAAAAAGTCTGGACTAC 57.445 36.000 3.54 0.00 43.05 2.73
90 91 8.575649 AAAAAGAGTTCAAAAAGTCTGGACTA 57.424 30.769 3.54 0.00 43.05 2.59
91 92 7.468141 AAAAAGAGTTCAAAAAGTCTGGACT 57.532 32.000 0.00 0.00 43.05 3.85
113 114 4.175516 CAAGTGTGCTTTGCTGAGAAAAA 58.824 39.130 0.00 0.00 31.49 1.94
114 115 3.193267 ACAAGTGTGCTTTGCTGAGAAAA 59.807 39.130 0.00 0.00 31.49 2.29
115 116 2.754552 ACAAGTGTGCTTTGCTGAGAAA 59.245 40.909 0.00 0.00 31.49 2.52
116 117 2.097954 CACAAGTGTGCTTTGCTGAGAA 59.902 45.455 0.00 0.00 39.39 2.87
117 118 1.672363 CACAAGTGTGCTTTGCTGAGA 59.328 47.619 0.00 0.00 39.39 3.27
118 119 1.268896 CCACAAGTGTGCTTTGCTGAG 60.269 52.381 5.89 0.00 44.34 3.35
119 120 0.740149 CCACAAGTGTGCTTTGCTGA 59.260 50.000 5.89 0.00 44.34 4.26
120 121 0.740149 TCCACAAGTGTGCTTTGCTG 59.260 50.000 5.89 0.00 44.34 4.41
170 171 1.344763 CCATCTTCTACCTTAGGCCGG 59.655 57.143 0.00 0.00 0.00 6.13
176 177 1.768870 GCCAGCCCATCTTCTACCTTA 59.231 52.381 0.00 0.00 0.00 2.69
205 207 0.674581 CTGATCCACAAGAGGCGCAA 60.675 55.000 10.83 0.00 0.00 4.85
216 218 0.741221 GCCCGTCACTTCTGATCCAC 60.741 60.000 0.00 0.00 0.00 4.02
306 318 2.681848 TGGTTTCTTGGCGTCGTTTTTA 59.318 40.909 0.00 0.00 0.00 1.52
595 617 1.532604 AATGACACGCGAGGGAGACA 61.533 55.000 15.93 4.04 38.45 3.41
614 638 0.541863 GGAGCGAGGAGGGAATTGAA 59.458 55.000 0.00 0.00 0.00 2.69
696 720 4.115199 GGCAATCCAGAGGCCGGT 62.115 66.667 1.90 0.00 38.04 5.28
701 725 2.383245 ATACGGCGGCAATCCAGAGG 62.383 60.000 13.24 0.00 0.00 3.69
703 727 1.069090 GATACGGCGGCAATCCAGA 59.931 57.895 13.24 0.00 0.00 3.86
704 728 0.946221 GAGATACGGCGGCAATCCAG 60.946 60.000 13.24 0.00 0.00 3.86
706 730 0.249911 AAGAGATACGGCGGCAATCC 60.250 55.000 13.24 5.85 0.00 3.01
707 731 0.861837 CAAGAGATACGGCGGCAATC 59.138 55.000 13.24 11.40 0.00 2.67
708 732 1.160329 GCAAGAGATACGGCGGCAAT 61.160 55.000 13.24 0.83 0.00 3.56
709 733 1.813753 GCAAGAGATACGGCGGCAA 60.814 57.895 13.24 0.00 0.00 4.52
710 734 2.202878 GCAAGAGATACGGCGGCA 60.203 61.111 13.24 0.00 0.00 5.69
740 765 6.127366 ACACACTGCAATAAATAATTCCCCAG 60.127 38.462 0.00 0.00 0.00 4.45
825 850 2.867624 AGAATTCTGCTGTTCTTGGCA 58.132 42.857 7.30 0.00 36.94 4.92
905 930 2.393764 CAAACGTTTCATTCAGCCCAC 58.606 47.619 11.37 0.00 0.00 4.61
1308 1339 5.546526 ACAAACAATGGCGGTTCATAAATT 58.453 33.333 0.00 0.00 0.00 1.82
1312 1343 4.302455 CAAACAAACAATGGCGGTTCATA 58.698 39.130 0.00 0.00 0.00 2.15
1314 1345 2.544685 CAAACAAACAATGGCGGTTCA 58.455 42.857 0.00 0.00 0.00 3.18
1320 1351 2.287644 GGACAAGCAAACAAACAATGGC 59.712 45.455 0.00 0.00 0.00 4.40
1331 1362 5.061920 AGTAAAACAAACGGACAAGCAAA 57.938 34.783 0.00 0.00 0.00 3.68
1335 1366 8.623310 AATTGTAAGTAAAACAAACGGACAAG 57.377 30.769 0.00 0.00 40.05 3.16
1338 1369 9.667989 ATGTAATTGTAAGTAAAACAAACGGAC 57.332 29.630 0.00 0.00 40.05 4.79
1340 1371 8.421701 GCATGTAATTGTAAGTAAAACAAACGG 58.578 33.333 0.00 0.00 40.05 4.44
1341 1372 9.176181 AGCATGTAATTGTAAGTAAAACAAACG 57.824 29.630 0.00 0.00 40.05 3.60
1422 1454 4.256920 CTCCAAAGACACAGATAAGGGTG 58.743 47.826 0.00 0.00 40.78 4.61
1509 1541 5.233957 TGAGATTTGCAATGGTGAATACG 57.766 39.130 0.00 0.00 0.00 3.06
1617 1652 5.063312 CCAAAGCCTGTACAAAAACACAAAG 59.937 40.000 0.00 0.00 0.00 2.77
1623 1658 3.453424 CACCCAAAGCCTGTACAAAAAC 58.547 45.455 0.00 0.00 0.00 2.43
1627 1662 0.106469 TGCACCCAAAGCCTGTACAA 60.106 50.000 0.00 0.00 0.00 2.41
1715 1750 3.282831 GGTAACAAACATGGACAGCAC 57.717 47.619 0.00 0.00 0.00 4.40
1776 1816 5.407691 ACATGAAGATGTATAATCAGCTGCG 59.592 40.000 9.47 0.00 41.27 5.18
1883 1923 1.059264 GACTTTGGAATCGAGCGAACG 59.941 52.381 0.00 0.00 0.00 3.95
1919 1959 6.676456 GAAAGAAATTCCTGATGGTGTCATCG 60.676 42.308 0.00 0.00 41.00 3.84
2009 2049 5.712152 AAGGCAGAATTCTTACCACAAAG 57.288 39.130 21.13 3.77 0.00 2.77
2097 2137 5.230942 AGAGAACATCAAAACCGTAGACTG 58.769 41.667 0.00 0.00 0.00 3.51
2128 2168 8.850452 CATGCATCATAGAAATTCGATCATTTG 58.150 33.333 0.00 0.00 0.00 2.32
2165 2205 4.950278 GCGAAATTGAATCGAACTAACTCG 59.050 41.667 2.27 0.00 42.76 4.18
2224 2264 2.030893 TCAAGCTGAATTTGAACGGCAG 60.031 45.455 0.00 0.00 40.39 4.85
2281 2321 9.634021 TGATCTCAAGTAGTCAGTACAAGATAT 57.366 33.333 0.00 0.00 32.25 1.63
2282 2322 9.634021 ATGATCTCAAGTAGTCAGTACAAGATA 57.366 33.333 0.00 0.00 32.25 1.98
2283 2323 7.946381 TGATCTCAAGTAGTCAGTACAAGAT 57.054 36.000 0.00 0.00 33.61 2.40
2284 2324 7.946381 ATGATCTCAAGTAGTCAGTACAAGA 57.054 36.000 0.00 0.00 33.55 3.02
2381 2421 1.270412 ACCGCACGTTCTGGTCAAATA 60.270 47.619 0.00 0.00 0.00 1.40
2395 2435 3.438297 TCTATTCAAGCTAGACCGCAC 57.562 47.619 0.00 0.00 0.00 5.34
2526 2566 4.895224 ACTAGATCAAGCGACAACGATA 57.105 40.909 0.00 0.00 42.66 2.92
2560 2600 6.149633 GGCCAAAACTTTAAGACATGTAGTG 58.850 40.000 0.00 0.00 0.00 2.74
2570 2610 3.451141 TGTGCTGGCCAAAACTTTAAG 57.549 42.857 7.01 0.00 0.00 1.85
2582 2622 0.744874 AGATCATGCAATGTGCTGGC 59.255 50.000 0.00 0.00 46.80 4.85
2620 2682 4.095483 AGTTTTATGACAGCATGCTACTGC 59.905 41.667 22.19 10.39 42.53 4.40
2621 2683 5.808042 AGTTTTATGACAGCATGCTACTG 57.192 39.130 22.19 12.15 42.53 2.74
2622 2684 5.520288 CGTAGTTTTATGACAGCATGCTACT 59.480 40.000 22.19 19.08 42.53 2.57
2623 2685 5.518847 TCGTAGTTTTATGACAGCATGCTAC 59.481 40.000 22.19 17.57 42.53 3.58
2624 2686 5.656480 TCGTAGTTTTATGACAGCATGCTA 58.344 37.500 22.19 5.30 42.53 3.49
2625 2687 4.503910 TCGTAGTTTTATGACAGCATGCT 58.496 39.130 16.30 16.30 42.53 3.79
2626 2688 4.857871 TCGTAGTTTTATGACAGCATGC 57.142 40.909 10.51 10.51 42.53 4.06
2627 2689 7.688372 AGAAATCGTAGTTTTATGACAGCATG 58.312 34.615 0.00 0.00 46.00 4.06
2628 2690 7.849804 AGAAATCGTAGTTTTATGACAGCAT 57.150 32.000 0.00 0.00 38.54 3.79
2629 2691 8.817100 CATAGAAATCGTAGTTTTATGACAGCA 58.183 33.333 0.00 0.00 0.00 4.41
2630 2692 7.794349 GCATAGAAATCGTAGTTTTATGACAGC 59.206 37.037 8.59 0.00 0.00 4.40
2631 2693 8.817100 TGCATAGAAATCGTAGTTTTATGACAG 58.183 33.333 8.59 0.00 0.00 3.51
2632 2694 8.710835 TGCATAGAAATCGTAGTTTTATGACA 57.289 30.769 8.59 0.00 0.00 3.58
2637 2699 9.817809 AGAGAATGCATAGAAATCGTAGTTTTA 57.182 29.630 0.00 0.00 0.00 1.52
2638 2700 8.723942 AGAGAATGCATAGAAATCGTAGTTTT 57.276 30.769 0.00 0.00 0.00 2.43
2639 2701 7.439655 GGAGAGAATGCATAGAAATCGTAGTTT 59.560 37.037 0.00 0.00 0.00 2.66
2640 2702 6.926272 GGAGAGAATGCATAGAAATCGTAGTT 59.074 38.462 0.00 0.00 0.00 2.24
2641 2703 6.266558 AGGAGAGAATGCATAGAAATCGTAGT 59.733 38.462 0.00 0.00 0.00 2.73
2642 2704 6.686630 AGGAGAGAATGCATAGAAATCGTAG 58.313 40.000 0.00 0.00 0.00 3.51
2643 2705 6.568653 CGAGGAGAGAATGCATAGAAATCGTA 60.569 42.308 0.00 0.00 0.00 3.43
2644 2706 5.537188 GAGGAGAGAATGCATAGAAATCGT 58.463 41.667 0.00 0.00 0.00 3.73
2668 2730 7.655490 TCGGCAGTAGGACTAGATTTATTTAC 58.345 38.462 0.00 0.00 0.00 2.01
2989 3051 4.999311 TCTACTACTTACGTCTTCAGTGCA 59.001 41.667 0.00 0.00 0.00 4.57
3071 3135 2.939782 GCATGATGCAACAAGCTCG 58.060 52.632 15.82 0.00 44.26 5.03
3197 3261 0.613853 TCAGGGGAGGAACGGTGTAG 60.614 60.000 0.00 0.00 0.00 2.74
3279 3343 6.822170 CAGATGTTGAAGATGAGAATCTTGGA 59.178 38.462 5.72 0.00 40.67 3.53
3457 3541 7.849904 AGTTAATTAATCCTTAGTCCTCCCTCA 59.150 37.037 0.31 0.00 0.00 3.86
3478 3562 7.504238 ACAGTTAACAAACCCATCATCAGTTAA 59.496 33.333 8.61 0.00 0.00 2.01
3511 3595 1.682451 CTGCCATGCCCATCCAAAGG 61.682 60.000 0.00 0.00 0.00 3.11
3578 3662 0.249238 CCTGCAGTATCTCCGAGCAC 60.249 60.000 13.81 0.00 0.00 4.40
3818 3902 5.305644 GCTCTTATATTTCTCCACAGAGGGA 59.694 44.000 0.00 0.00 40.83 4.20
3819 3903 5.546526 GCTCTTATATTTCTCCACAGAGGG 58.453 45.833 0.00 0.00 40.83 4.30
3820 3904 5.221342 ACGCTCTTATATTTCTCCACAGAGG 60.221 44.000 0.00 0.00 40.83 3.69
3821 3905 5.837437 ACGCTCTTATATTTCTCCACAGAG 58.163 41.667 0.00 0.00 41.93 3.35
3822 3906 5.854010 ACGCTCTTATATTTCTCCACAGA 57.146 39.130 0.00 0.00 0.00 3.41
3823 3907 6.910536 AAACGCTCTTATATTTCTCCACAG 57.089 37.500 0.00 0.00 0.00 3.66
3824 3908 7.553334 AGTAAACGCTCTTATATTTCTCCACA 58.447 34.615 0.00 0.00 0.00 4.17
3825 3909 8.421673 AAGTAAACGCTCTTATATTTCTCCAC 57.578 34.615 0.00 0.00 0.00 4.02
3826 3910 8.255206 TGAAGTAAACGCTCTTATATTTCTCCA 58.745 33.333 0.00 0.00 0.00 3.86
3827 3911 8.541312 GTGAAGTAAACGCTCTTATATTTCTCC 58.459 37.037 0.00 0.00 0.00 3.71
3828 3912 9.303537 AGTGAAGTAAACGCTCTTATATTTCTC 57.696 33.333 0.00 0.00 0.00 2.87
3835 3919 9.570488 CTAAAGTAGTGAAGTAAACGCTCTTAT 57.430 33.333 0.00 0.00 0.00 1.73
3836 3920 8.571336 ACTAAAGTAGTGAAGTAAACGCTCTTA 58.429 33.333 0.00 0.00 37.69 2.10
3837 3921 7.432059 ACTAAAGTAGTGAAGTAAACGCTCTT 58.568 34.615 0.00 0.00 37.69 2.85
3838 3922 6.979465 ACTAAAGTAGTGAAGTAAACGCTCT 58.021 36.000 0.00 0.00 37.69 4.09
3852 3936 8.667592 AAGAGGGTTTAGATCACTAAAGTAGT 57.332 34.615 0.00 0.00 45.42 2.73
3868 3952 8.836735 TCTCTGGAAAGAAATATAAGAGGGTTT 58.163 33.333 0.00 0.00 32.41 3.27
3869 3953 8.393959 TCTCTGGAAAGAAATATAAGAGGGTT 57.606 34.615 0.00 0.00 32.41 4.11
3870 3954 7.846823 TCTCTCTGGAAAGAAATATAAGAGGGT 59.153 37.037 0.00 0.00 33.44 4.34
3871 3955 8.256356 TCTCTCTGGAAAGAAATATAAGAGGG 57.744 38.462 0.00 0.00 33.05 4.30
3872 3956 8.923270 ACTCTCTCTGGAAAGAAATATAAGAGG 58.077 37.037 0.00 0.00 32.41 3.69
3919 4003 7.872113 AGATCCTCCTAATGAATCAACAAAC 57.128 36.000 0.00 0.00 0.00 2.93
3921 4005 7.056635 GGAAGATCCTCCTAATGAATCAACAA 58.943 38.462 2.83 0.00 32.53 2.83
3922 4006 6.388100 AGGAAGATCCTCCTAATGAATCAACA 59.612 38.462 11.42 0.00 45.66 3.33
3923 4007 6.836242 AGGAAGATCCTCCTAATGAATCAAC 58.164 40.000 11.42 0.00 45.66 3.18
3938 4022 2.170607 TGGATGAACGGAAGGAAGATCC 59.829 50.000 0.00 0.00 36.58 3.36
3939 4023 3.543680 TGGATGAACGGAAGGAAGATC 57.456 47.619 0.00 0.00 0.00 2.75
3940 4024 3.455910 TGATGGATGAACGGAAGGAAGAT 59.544 43.478 0.00 0.00 0.00 2.40
3941 4025 2.837591 TGATGGATGAACGGAAGGAAGA 59.162 45.455 0.00 0.00 0.00 2.87
3942 4026 3.266510 TGATGGATGAACGGAAGGAAG 57.733 47.619 0.00 0.00 0.00 3.46
3943 4027 3.712016 TTGATGGATGAACGGAAGGAA 57.288 42.857 0.00 0.00 0.00 3.36
3944 4028 3.343617 GTTTGATGGATGAACGGAAGGA 58.656 45.455 0.00 0.00 0.00 3.36
3945 4029 2.095853 CGTTTGATGGATGAACGGAAGG 59.904 50.000 0.00 0.00 41.59 3.46
3946 4030 3.000041 TCGTTTGATGGATGAACGGAAG 59.000 45.455 7.83 0.00 44.40 3.46
3947 4031 3.046968 TCGTTTGATGGATGAACGGAA 57.953 42.857 7.83 0.00 44.40 4.30
3948 4032 2.739913 GTTCGTTTGATGGATGAACGGA 59.260 45.455 7.83 0.00 44.40 4.69
3949 4033 2.482336 TGTTCGTTTGATGGATGAACGG 59.518 45.455 7.83 0.00 44.40 4.44
3950 4034 3.804518 TGTTCGTTTGATGGATGAACG 57.195 42.857 1.81 1.81 42.94 3.95
3951 4035 5.942872 AGATTGTTCGTTTGATGGATGAAC 58.057 37.500 3.01 3.01 41.29 3.18
3952 4036 6.573664 AAGATTGTTCGTTTGATGGATGAA 57.426 33.333 0.00 0.00 0.00 2.57
3953 4037 6.573664 AAAGATTGTTCGTTTGATGGATGA 57.426 33.333 0.00 0.00 0.00 2.92
3961 4045 7.858052 AGCATTAGAAAAGATTGTTCGTTTG 57.142 32.000 0.00 0.00 34.33 2.93
3965 4049 5.858049 TGCAAGCATTAGAAAAGATTGTTCG 59.142 36.000 0.00 0.00 0.00 3.95
3970 4058 7.974501 CAGAATCTGCAAGCATTAGAAAAGATT 59.025 33.333 0.00 0.00 36.20 2.40
3971 4059 7.338703 TCAGAATCTGCAAGCATTAGAAAAGAT 59.661 33.333 5.18 0.00 0.00 2.40
3972 4060 6.656270 TCAGAATCTGCAAGCATTAGAAAAGA 59.344 34.615 5.18 0.00 0.00 2.52
3974 4062 6.822667 TCAGAATCTGCAAGCATTAGAAAA 57.177 33.333 5.18 0.00 0.00 2.29
3975 4063 6.615088 GTTCAGAATCTGCAAGCATTAGAAA 58.385 36.000 5.18 0.00 0.00 2.52
3978 4066 4.093998 ACGTTCAGAATCTGCAAGCATTAG 59.906 41.667 5.18 0.00 0.00 1.73
3980 4068 2.816087 ACGTTCAGAATCTGCAAGCATT 59.184 40.909 5.18 0.00 0.00 3.56
4098 4201 2.783135 GCCTTCTTGATGGTGAAGACA 58.217 47.619 0.00 0.00 41.38 3.41
4125 4228 1.377229 GATGGTGAACCCCGTGGAA 59.623 57.895 0.00 0.00 34.81 3.53
4286 4401 0.312416 GCACACACGCCCAACATTTA 59.688 50.000 0.00 0.00 0.00 1.40
4307 4430 1.737735 CGATGAAGTCCTGCGCACA 60.738 57.895 5.66 1.21 0.00 4.57
4492 4618 4.643387 GCCACCTCCTGCACCGTT 62.643 66.667 0.00 0.00 0.00 4.44
4510 4636 1.759881 CTCCTGGATGATGGAGCCC 59.240 63.158 0.00 0.00 42.62 5.19
4697 4828 3.679025 GCTCCATCTTGATCATCATCGTC 59.321 47.826 0.00 0.00 0.00 4.20
4709 4840 3.873952 GCCAGTTAGTTAGCTCCATCTTG 59.126 47.826 0.00 0.00 0.00 3.02
4745 4876 6.012113 ACCTGTACCTACAACATACAGTACA 58.988 40.000 9.18 0.00 42.79 2.90
4746 4877 6.521151 ACCTGTACCTACAACATACAGTAC 57.479 41.667 9.18 0.00 42.79 2.73
4747 4878 7.015487 ACAAACCTGTACCTACAACATACAGTA 59.985 37.037 9.18 0.00 42.79 2.74
4748 4879 6.183361 ACAAACCTGTACCTACAACATACAGT 60.183 38.462 9.18 0.00 42.79 3.55
4749 4880 6.228258 ACAAACCTGTACCTACAACATACAG 58.772 40.000 4.07 4.07 43.57 2.74
4813 4945 4.196971 AGGTGAAATCGTAAGCCATTACC 58.803 43.478 0.00 0.00 38.46 2.85
4814 4946 5.585047 AGAAGGTGAAATCGTAAGCCATTAC 59.415 40.000 0.00 0.00 38.34 1.89
4840 4972 7.601856 TCCCATCATTTCATTTGTGTTAACTC 58.398 34.615 7.22 3.79 0.00 3.01
4841 4973 7.537596 TCCCATCATTTCATTTGTGTTAACT 57.462 32.000 7.22 0.00 0.00 2.24
4848 4980 5.085920 TCAGGTTCCCATCATTTCATTTGT 58.914 37.500 0.00 0.00 0.00 2.83
4849 4981 5.664294 TCAGGTTCCCATCATTTCATTTG 57.336 39.130 0.00 0.00 0.00 2.32
4850 4982 6.896860 TGTATCAGGTTCCCATCATTTCATTT 59.103 34.615 0.00 0.00 0.00 2.32
4853 4985 5.449297 TGTATCAGGTTCCCATCATTTCA 57.551 39.130 0.00 0.00 0.00 2.69
4854 4986 6.966534 AATGTATCAGGTTCCCATCATTTC 57.033 37.500 0.00 0.00 0.00 2.17
4855 4987 6.669154 ACAAATGTATCAGGTTCCCATCATTT 59.331 34.615 0.00 0.00 35.56 2.32
4856 4988 6.197168 ACAAATGTATCAGGTTCCCATCATT 58.803 36.000 0.00 0.00 0.00 2.57
4860 4992 5.588648 CGTTACAAATGTATCAGGTTCCCAT 59.411 40.000 0.00 0.00 0.00 4.00
4862 4994 5.180271 TCGTTACAAATGTATCAGGTTCCC 58.820 41.667 0.00 0.00 0.00 3.97
4863 4995 5.220605 GCTCGTTACAAATGTATCAGGTTCC 60.221 44.000 0.00 0.00 0.00 3.62
4864 4996 5.581085 AGCTCGTTACAAATGTATCAGGTTC 59.419 40.000 0.00 0.00 0.00 3.62
4865 4997 5.488341 AGCTCGTTACAAATGTATCAGGTT 58.512 37.500 0.00 0.00 0.00 3.50
4899 5034 7.624360 TTGCGATTACTTGAAGTGGAAATAT 57.376 32.000 8.33 0.00 0.00 1.28
4940 5075 4.068599 TGCTACCAAATCGAATTCACACA 58.931 39.130 6.22 0.00 0.00 3.72
4952 5087 1.745087 CGCATCCAACTGCTACCAAAT 59.255 47.619 0.00 0.00 40.06 2.32
4956 5091 0.179045 ATCCGCATCCAACTGCTACC 60.179 55.000 0.00 0.00 40.06 3.18
4960 5095 1.089481 TCGAATCCGCATCCAACTGC 61.089 55.000 0.00 0.00 38.81 4.40
4961 5096 1.368641 TTCGAATCCGCATCCAACTG 58.631 50.000 0.00 0.00 35.37 3.16
4962 5097 2.332063 ATTCGAATCCGCATCCAACT 57.668 45.000 4.39 0.00 35.37 3.16
4964 5099 3.501828 CCAATATTCGAATCCGCATCCAA 59.498 43.478 15.25 0.00 35.37 3.53
4965 5100 3.073678 CCAATATTCGAATCCGCATCCA 58.926 45.455 15.25 0.00 35.37 3.41
4966 5101 3.074412 ACCAATATTCGAATCCGCATCC 58.926 45.455 15.25 0.00 35.37 3.51
4969 5104 4.156922 ACAAAACCAATATTCGAATCCGCA 59.843 37.500 15.25 0.00 35.37 5.69
4970 5105 4.668289 ACAAAACCAATATTCGAATCCGC 58.332 39.130 15.25 0.00 35.37 5.54
4972 5107 5.065474 TCCGACAAAACCAATATTCGAATCC 59.935 40.000 15.25 0.00 0.00 3.01
4973 5108 6.114221 TCCGACAAAACCAATATTCGAATC 57.886 37.500 15.25 0.00 0.00 2.52
4974 5109 6.693315 ATCCGACAAAACCAATATTCGAAT 57.307 33.333 16.15 16.15 0.00 3.34
4976 5111 5.220510 CGAATCCGACAAAACCAATATTCGA 60.221 40.000 8.05 0.00 44.24 3.71
4979 5114 4.944930 TCCGAATCCGACAAAACCAATATT 59.055 37.500 0.00 0.00 38.22 1.28
4982 5117 2.747446 CTCCGAATCCGACAAAACCAAT 59.253 45.455 0.00 0.00 38.22 3.16
4984 5119 1.345089 TCTCCGAATCCGACAAAACCA 59.655 47.619 0.00 0.00 38.22 3.67
5003 5143 4.081972 TCTGACTTGAGGCTGTTACTCATC 60.082 45.833 0.00 0.00 43.82 2.92
5030 5170 3.422214 CGTGTATGCATGTGCGATATGTC 60.422 47.826 10.16 0.00 45.83 3.06
5037 5177 2.023181 GCCGTGTATGCATGTGCG 59.977 61.111 10.16 10.26 45.83 5.34
5066 5206 3.317993 AGTTGTGCCGCAGTTTTCTATTT 59.682 39.130 0.00 0.00 0.00 1.40
5071 5211 2.766970 TAAGTTGTGCCGCAGTTTTC 57.233 45.000 0.00 0.00 0.00 2.29
5080 5220 1.877443 ACACATCGGTTAAGTTGTGCC 59.123 47.619 7.76 0.00 42.46 5.01
5100 5240 7.201696 GGTTGTCTTGTAAGATGTGAAGTTGAA 60.202 37.037 0.00 0.00 37.39 2.69
5101 5241 6.260050 GGTTGTCTTGTAAGATGTGAAGTTGA 59.740 38.462 0.00 0.00 37.39 3.18
5105 5245 6.808008 ATGGTTGTCTTGTAAGATGTGAAG 57.192 37.500 0.00 0.00 37.39 3.02
5107 5247 7.882791 ACATAATGGTTGTCTTGTAAGATGTGA 59.117 33.333 0.00 0.00 37.39 3.58
5108 5248 8.044060 ACATAATGGTTGTCTTGTAAGATGTG 57.956 34.615 0.00 0.00 37.39 3.21
5116 5256 7.362056 GCATTCTGTACATAATGGTTGTCTTGT 60.362 37.037 26.27 0.00 34.37 3.16
5124 5264 5.260424 TGGTTGCATTCTGTACATAATGGT 58.740 37.500 26.27 0.00 34.37 3.55
5127 5267 5.945784 ACACTGGTTGCATTCTGTACATAAT 59.054 36.000 0.00 0.00 0.00 1.28
5187 5327 9.046296 GTGCATAAGTATTACTACTTGCTCATT 57.954 33.333 14.06 0.00 45.61 2.57
5226 5366 4.278170 TGCTTCCTATGTTCCACTGTTTTG 59.722 41.667 0.00 0.00 0.00 2.44
5258 5398 6.349280 GGCTCATGCTTGTTAGTGTTTCATTA 60.349 38.462 0.00 0.00 39.59 1.90
5261 5401 3.253188 GGCTCATGCTTGTTAGTGTTTCA 59.747 43.478 0.00 0.00 39.59 2.69
5262 5402 3.253188 TGGCTCATGCTTGTTAGTGTTTC 59.747 43.478 0.00 0.00 39.59 2.78
5283 5423 7.270779 TGAGTGTTATCTTTCTCCATGAGATG 58.729 38.462 0.00 0.00 38.56 2.90
5288 5428 6.820152 TCACATGAGTGTTATCTTTCTCCATG 59.180 38.462 0.00 0.00 46.01 3.66
5289 5429 6.950842 TCACATGAGTGTTATCTTTCTCCAT 58.049 36.000 0.00 0.00 46.01 3.41
5290 5430 6.358974 TCACATGAGTGTTATCTTTCTCCA 57.641 37.500 0.00 0.00 46.01 3.86
5291 5431 7.981789 TGTATCACATGAGTGTTATCTTTCTCC 59.018 37.037 0.00 0.00 46.01 3.71
5292 5432 8.932945 TGTATCACATGAGTGTTATCTTTCTC 57.067 34.615 0.00 0.00 46.01 2.87
5293 5433 9.376075 CTTGTATCACATGAGTGTTATCTTTCT 57.624 33.333 0.00 0.00 46.01 2.52
5294 5434 9.155975 ACTTGTATCACATGAGTGTTATCTTTC 57.844 33.333 0.00 0.00 46.01 2.62
5295 5435 9.507329 AACTTGTATCACATGAGTGTTATCTTT 57.493 29.630 0.00 0.00 46.01 2.52
5301 5441 9.944376 ACTATTAACTTGTATCACATGAGTGTT 57.056 29.630 0.00 0.00 46.01 3.32
5302 5442 9.944376 AACTATTAACTTGTATCACATGAGTGT 57.056 29.630 0.00 0.00 46.01 3.55
5422 5562 1.455248 TGGCGGTGGTATTTTGCTAC 58.545 50.000 0.00 0.00 0.00 3.58
5428 5568 1.762708 CTTCCATGGCGGTGGTATTT 58.237 50.000 6.96 0.00 40.27 1.40
5430 5570 1.152963 GCTTCCATGGCGGTGGTAT 60.153 57.895 6.96 0.00 40.27 2.73
5431 5571 1.847798 AAGCTTCCATGGCGGTGGTA 61.848 55.000 6.96 0.00 40.27 3.25
5432 5572 1.847798 TAAGCTTCCATGGCGGTGGT 61.848 55.000 6.96 0.00 40.27 4.16
5434 5574 1.392589 ATTAAGCTTCCATGGCGGTG 58.607 50.000 6.96 0.00 35.57 4.94
5435 5575 1.750778 CAATTAAGCTTCCATGGCGGT 59.249 47.619 6.96 3.06 35.57 5.68
5436 5576 2.023673 TCAATTAAGCTTCCATGGCGG 58.976 47.619 6.96 2.94 34.52 6.13
5437 5577 2.423185 TGTCAATTAAGCTTCCATGGCG 59.577 45.455 6.96 1.19 34.52 5.69
5438 5578 3.193267 TGTGTCAATTAAGCTTCCATGGC 59.807 43.478 6.96 2.35 0.00 4.40
5439 5579 4.460382 ACTGTGTCAATTAAGCTTCCATGG 59.540 41.667 4.97 4.97 0.00 3.66
5440 5580 5.633830 ACTGTGTCAATTAAGCTTCCATG 57.366 39.130 0.00 0.08 0.00 3.66
5441 5581 6.372659 CACTACTGTGTCAATTAAGCTTCCAT 59.627 38.462 0.00 0.00 39.24 3.41
5442 5582 5.700832 CACTACTGTGTCAATTAAGCTTCCA 59.299 40.000 0.00 0.00 39.24 3.53
5443 5583 6.170675 CACTACTGTGTCAATTAAGCTTCC 57.829 41.667 0.00 0.00 39.24 3.46
5458 5598 3.728845 CAGCACCAGTAAACACTACTGT 58.271 45.455 10.22 0.00 42.37 3.55
5459 5599 2.480419 GCAGCACCAGTAAACACTACTG 59.520 50.000 5.16 5.16 43.26 2.74
5460 5600 2.104111 TGCAGCACCAGTAAACACTACT 59.896 45.455 0.00 0.00 0.00 2.57
5461 5601 2.489971 TGCAGCACCAGTAAACACTAC 58.510 47.619 0.00 0.00 0.00 2.73
5462 5602 2.920724 TGCAGCACCAGTAAACACTA 57.079 45.000 0.00 0.00 0.00 2.74
5463 5603 2.154462 GATGCAGCACCAGTAAACACT 58.846 47.619 0.00 0.00 0.00 3.55
5464 5604 1.200020 GGATGCAGCACCAGTAAACAC 59.800 52.381 3.51 0.00 0.00 3.32
5465 5605 1.533625 GGATGCAGCACCAGTAAACA 58.466 50.000 3.51 0.00 0.00 2.83
5466 5606 0.811281 GGGATGCAGCACCAGTAAAC 59.189 55.000 3.51 0.00 0.00 2.01
5467 5607 0.323360 GGGGATGCAGCACCAGTAAA 60.323 55.000 20.83 0.00 0.00 2.01
5468 5608 1.302949 GGGGATGCAGCACCAGTAA 59.697 57.895 20.83 0.00 0.00 2.24
5469 5609 2.998097 GGGGATGCAGCACCAGTA 59.002 61.111 20.83 0.00 0.00 2.74
5470 5610 4.415150 CGGGGATGCAGCACCAGT 62.415 66.667 25.41 0.00 0.00 4.00
5474 5614 4.195334 ATCCCGGGGATGCAGCAC 62.195 66.667 27.71 0.00 41.43 4.40
5481 5621 2.527875 GCTCTCCATCCCGGGGAT 60.528 66.667 23.21 23.21 46.09 3.85
5484 5624 2.919856 ATCGCTCTCCATCCCGGG 60.920 66.667 16.85 16.85 34.36 5.73
5485 5625 1.539560 ATCATCGCTCTCCATCCCGG 61.540 60.000 0.00 0.00 0.00 5.73
5486 5626 0.108898 GATCATCGCTCTCCATCCCG 60.109 60.000 0.00 0.00 0.00 5.14
5487 5627 0.108898 CGATCATCGCTCTCCATCCC 60.109 60.000 0.00 0.00 31.14 3.85
5488 5628 0.884514 TCGATCATCGCTCTCCATCC 59.115 55.000 0.80 0.00 40.21 3.51
5489 5629 2.713895 TTCGATCATCGCTCTCCATC 57.286 50.000 0.80 0.00 40.21 3.51
5490 5630 4.441217 CCATATTCGATCATCGCTCTCCAT 60.441 45.833 0.80 0.00 40.21 3.41
5491 5631 3.119352 CCATATTCGATCATCGCTCTCCA 60.119 47.826 0.80 0.00 40.21 3.86
5492 5632 3.443037 CCATATTCGATCATCGCTCTCC 58.557 50.000 0.80 0.00 40.21 3.71
5493 5633 2.857152 GCCATATTCGATCATCGCTCTC 59.143 50.000 0.80 0.00 40.21 3.20
5494 5634 2.417924 GGCCATATTCGATCATCGCTCT 60.418 50.000 0.80 0.00 40.21 4.09
5495 5635 1.929836 GGCCATATTCGATCATCGCTC 59.070 52.381 0.80 0.00 40.21 5.03
5496 5636 1.552337 AGGCCATATTCGATCATCGCT 59.448 47.619 5.01 0.00 40.21 4.93
5497 5637 2.015736 AGGCCATATTCGATCATCGC 57.984 50.000 5.01 0.00 40.21 4.58
5498 5638 3.588955 TCAAGGCCATATTCGATCATCG 58.411 45.455 5.01 0.00 42.10 3.84
5499 5639 5.426504 AGATCAAGGCCATATTCGATCATC 58.573 41.667 5.01 0.00 33.33 2.92
5500 5640 5.432680 AGATCAAGGCCATATTCGATCAT 57.567 39.130 5.01 0.00 33.33 2.45
5501 5641 4.897509 AGATCAAGGCCATATTCGATCA 57.102 40.909 5.01 0.00 33.33 2.92
5502 5642 5.350914 CAGAAGATCAAGGCCATATTCGATC 59.649 44.000 5.01 6.73 0.00 3.69
5503 5643 5.012458 TCAGAAGATCAAGGCCATATTCGAT 59.988 40.000 5.01 0.00 0.00 3.59
5504 5644 4.344968 TCAGAAGATCAAGGCCATATTCGA 59.655 41.667 5.01 2.88 0.00 3.71
5505 5645 4.635223 TCAGAAGATCAAGGCCATATTCG 58.365 43.478 5.01 0.56 0.00 3.34
5506 5646 6.294473 TCTTCAGAAGATCAAGGCCATATTC 58.706 40.000 8.95 2.87 31.20 1.75
5507 5647 6.257994 TCTTCAGAAGATCAAGGCCATATT 57.742 37.500 8.95 0.00 31.20 1.28
5508 5648 5.901413 TCTTCAGAAGATCAAGGCCATAT 57.099 39.130 8.95 0.00 31.20 1.78
5509 5649 5.698741 TTCTTCAGAAGATCAAGGCCATA 57.301 39.130 13.86 0.00 37.38 2.74
5510 5650 4.581309 TTCTTCAGAAGATCAAGGCCAT 57.419 40.909 13.86 0.00 37.38 4.40
5511 5651 4.330250 CTTTCTTCAGAAGATCAAGGCCA 58.670 43.478 13.86 0.00 37.38 5.36
5512 5652 3.693578 CCTTTCTTCAGAAGATCAAGGCC 59.306 47.826 22.66 0.00 38.19 5.19
5513 5653 4.583871 TCCTTTCTTCAGAAGATCAAGGC 58.416 43.478 26.53 0.00 41.87 4.35
5514 5654 7.700022 AATTCCTTTCTTCAGAAGATCAAGG 57.300 36.000 25.88 25.88 42.79 3.61
5521 5661 9.282569 CCTCCATATAATTCCTTTCTTCAGAAG 57.717 37.037 3.45 3.45 35.21 2.85
5522 5662 9.003145 TCCTCCATATAATTCCTTTCTTCAGAA 57.997 33.333 0.00 0.00 0.00 3.02
5523 5663 8.567198 TCCTCCATATAATTCCTTTCTTCAGA 57.433 34.615 0.00 0.00 0.00 3.27
5526 5666 9.898152 CCTATCCTCCATATAATTCCTTTCTTC 57.102 37.037 0.00 0.00 0.00 2.87
5527 5667 9.635284 TCCTATCCTCCATATAATTCCTTTCTT 57.365 33.333 0.00 0.00 0.00 2.52
5528 5668 9.278011 CTCCTATCCTCCATATAATTCCTTTCT 57.722 37.037 0.00 0.00 0.00 2.52
5529 5669 9.273137 TCTCCTATCCTCCATATAATTCCTTTC 57.727 37.037 0.00 0.00 0.00 2.62
5530 5670 9.811208 ATCTCCTATCCTCCATATAATTCCTTT 57.189 33.333 0.00 0.00 0.00 3.11
5531 5671 9.223291 CATCTCCTATCCTCCATATAATTCCTT 57.777 37.037 0.00 0.00 0.00 3.36
5532 5672 7.793709 CCATCTCCTATCCTCCATATAATTCCT 59.206 40.741 0.00 0.00 0.00 3.36
5533 5673 7.017056 CCCATCTCCTATCCTCCATATAATTCC 59.983 44.444 0.00 0.00 0.00 3.01
5534 5674 7.017056 CCCCATCTCCTATCCTCCATATAATTC 59.983 44.444 0.00 0.00 0.00 2.17
5535 5675 6.853983 CCCCATCTCCTATCCTCCATATAATT 59.146 42.308 0.00 0.00 0.00 1.40
5536 5676 6.166595 TCCCCATCTCCTATCCTCCATATAAT 59.833 42.308 0.00 0.00 0.00 1.28
5537 5677 5.503575 TCCCCATCTCCTATCCTCCATATAA 59.496 44.000 0.00 0.00 0.00 0.98
5538 5678 5.060509 TCCCCATCTCCTATCCTCCATATA 58.939 45.833 0.00 0.00 0.00 0.86
5539 5679 3.873476 TCCCCATCTCCTATCCTCCATAT 59.127 47.826 0.00 0.00 0.00 1.78
5540 5680 3.287018 TCCCCATCTCCTATCCTCCATA 58.713 50.000 0.00 0.00 0.00 2.74
5541 5681 2.093343 TCCCCATCTCCTATCCTCCAT 58.907 52.381 0.00 0.00 0.00 3.41
5542 5682 1.557681 TCCCCATCTCCTATCCTCCA 58.442 55.000 0.00 0.00 0.00 3.86
5543 5683 2.959421 ATCCCCATCTCCTATCCTCC 57.041 55.000 0.00 0.00 0.00 4.30
5544 5684 5.130145 CACATTATCCCCATCTCCTATCCTC 59.870 48.000 0.00 0.00 0.00 3.71
5545 5685 5.035556 CACATTATCCCCATCTCCTATCCT 58.964 45.833 0.00 0.00 0.00 3.24
5546 5686 4.384647 GCACATTATCCCCATCTCCTATCC 60.385 50.000 0.00 0.00 0.00 2.59
5547 5687 4.681781 CGCACATTATCCCCATCTCCTATC 60.682 50.000 0.00 0.00 0.00 2.08
5548 5688 3.198635 CGCACATTATCCCCATCTCCTAT 59.801 47.826 0.00 0.00 0.00 2.57
5549 5689 2.567169 CGCACATTATCCCCATCTCCTA 59.433 50.000 0.00 0.00 0.00 2.94
5550 5690 1.349026 CGCACATTATCCCCATCTCCT 59.651 52.381 0.00 0.00 0.00 3.69
5551 5691 1.813513 CGCACATTATCCCCATCTCC 58.186 55.000 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.