Multiple sequence alignment - TraesCS4B01G056700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G056700 chr4B 100.000 4502 0 0 1 4502 46606160 46610661 0.000000e+00 8314.0
1 TraesCS4B01G056700 chr4B 98.571 70 1 0 1772 1841 46607862 46607931 1.700000e-24 124.0
2 TraesCS4B01G056700 chr4B 98.571 70 1 0 1703 1772 46607931 46608000 1.700000e-24 124.0
3 TraesCS4B01G056700 chr4D 94.078 1925 67 19 1772 3668 32220234 32222139 0.000000e+00 2880.0
4 TraesCS4B01G056700 chr4D 88.535 1666 114 41 143 1772 32218679 32220303 0.000000e+00 1947.0
5 TraesCS4B01G056700 chr4D 81.098 328 21 19 4207 4502 32222769 32223087 1.630000e-54 224.0
6 TraesCS4B01G056700 chr4D 81.333 300 20 17 3752 4030 32222239 32222523 1.270000e-50 211.0
7 TraesCS4B01G056700 chr4D 81.095 201 23 13 3998 4188 32222529 32222724 3.630000e-31 147.0
8 TraesCS4B01G056700 chr4D 84.946 93 14 0 1001 1093 405321655 405321747 1.330000e-15 95.3
9 TraesCS4B01G056700 chr4A 96.002 1626 56 5 1907 3526 570479649 570478027 0.000000e+00 2634.0
10 TraesCS4B01G056700 chr4A 88.683 1670 120 25 134 1772 570481397 570479766 0.000000e+00 1973.0
11 TraesCS4B01G056700 chr4A 91.878 197 13 1 1772 1968 570479835 570479642 5.740000e-69 272.0
12 TraesCS4B01G056700 chr4A 79.087 416 41 21 3520 3906 570477996 570477598 1.250000e-60 244.0
13 TraesCS4B01G056700 chr4A 79.443 287 38 12 3903 4187 570477564 570477297 2.770000e-42 183.0
14 TraesCS4B01G056700 chr1A 87.071 2011 180 40 1766 3724 535062756 535064738 0.000000e+00 2200.0
15 TraesCS4B01G056700 chr1A 76.797 612 87 38 757 1347 535061999 535062576 4.400000e-75 292.0
16 TraesCS4B01G056700 chr1B 88.630 1847 138 38 1950 3753 594138950 594140767 0.000000e+00 2182.0
17 TraesCS4B01G056700 chr1B 77.208 566 83 33 795 1346 594138038 594138571 5.700000e-74 289.0
18 TraesCS4B01G056700 chr1D 89.806 1697 122 23 1950 3620 438369284 438370955 0.000000e+00 2128.0
19 TraesCS4B01G056700 chr1D 78.772 570 68 34 800 1347 438368364 438368902 2.600000e-87 333.0
20 TraesCS4B01G056700 chr5A 87.500 648 81 0 2841 3488 598519358 598520005 0.000000e+00 749.0
21 TraesCS4B01G056700 chr5A 91.579 95 8 0 1001 1095 598517836 598517930 1.020000e-26 132.0
22 TraesCS4B01G056700 chr5B 87.346 648 82 0 2841 3488 587601351 587601998 0.000000e+00 743.0
23 TraesCS4B01G056700 chr5B 91.579 95 8 0 1001 1095 587599856 587599950 1.020000e-26 132.0
24 TraesCS4B01G056700 chr5D 86.728 648 86 0 2841 3488 479878741 479879388 0.000000e+00 721.0
25 TraesCS4B01G056700 chr5D 91.579 95 8 0 1001 1095 479877248 479877342 1.020000e-26 132.0
26 TraesCS4B01G056700 chr2D 83.801 321 48 4 2867 3185 154182155 154181837 7.320000e-78 302.0
27 TraesCS4B01G056700 chr2A 97.059 102 3 0 2079 2180 94389020 94388919 5.990000e-39 172.0
28 TraesCS4B01G056700 chr6B 96.078 102 4 0 2079 2180 302277662 302277763 2.790000e-37 167.0
29 TraesCS4B01G056700 chr3B 96.078 102 4 0 2079 2180 8671898 8671999 2.790000e-37 167.0
30 TraesCS4B01G056700 chr3B 90.909 77 5 2 49 124 581095875 581095950 7.970000e-18 102.0
31 TraesCS4B01G056700 chr6A 95.098 102 5 0 2079 2180 463742020 463742121 1.300000e-35 161.0
32 TraesCS4B01G056700 chr7B 91.463 82 5 2 48 128 714379966 714379886 1.320000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G056700 chr4B 46606160 46610661 4501 False 2854.0 8314 99.047333 1 4502 3 chr4B.!!$F1 4501
1 TraesCS4B01G056700 chr4D 32218679 32223087 4408 False 1081.8 2880 85.227800 143 4502 5 chr4D.!!$F2 4359
2 TraesCS4B01G056700 chr4A 570477297 570481397 4100 True 1061.2 2634 87.018600 134 4187 5 chr4A.!!$R1 4053
3 TraesCS4B01G056700 chr1A 535061999 535064738 2739 False 1246.0 2200 81.934000 757 3724 2 chr1A.!!$F1 2967
4 TraesCS4B01G056700 chr1B 594138038 594140767 2729 False 1235.5 2182 82.919000 795 3753 2 chr1B.!!$F1 2958
5 TraesCS4B01G056700 chr1D 438368364 438370955 2591 False 1230.5 2128 84.289000 800 3620 2 chr1D.!!$F1 2820
6 TraesCS4B01G056700 chr5A 598517836 598520005 2169 False 440.5 749 89.539500 1001 3488 2 chr5A.!!$F1 2487
7 TraesCS4B01G056700 chr5B 587599856 587601998 2142 False 437.5 743 89.462500 1001 3488 2 chr5B.!!$F1 2487
8 TraesCS4B01G056700 chr5D 479877248 479879388 2140 False 426.5 721 89.153500 1001 3488 2 chr5D.!!$F1 2487

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.024619 GCGAATAGACAACGCGGTTC 59.975 55.0 12.47 4.49 42.65 3.62 F
116 117 0.038618 GCCAACGCCCACTTTTTAGG 60.039 55.0 0.00 0.00 0.00 2.69 F
683 696 0.107654 CCAAGCCCCCTAAGACTTCG 60.108 60.0 0.00 0.00 0.00 3.79 F
1440 1534 0.040958 GCTGCAGTTCACCTGTTTCG 60.041 55.0 16.64 0.00 43.55 3.46 F
2500 3066 0.174617 GTTCTCTTCTCCTGGAGCGG 59.825 60.0 19.08 13.10 0.00 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1108 1161 0.034477 GATCAAGCGGGGAAAGGGAA 60.034 55.000 0.00 0.0 0.0 3.97 R
1220 1309 0.036388 TCCCCTTCTAGCAAACGCAG 60.036 55.000 0.00 0.0 0.0 5.18 R
2449 3015 0.179020 CAGTTCCACCTCCAACAGCA 60.179 55.000 0.00 0.0 0.0 4.41 R
3012 3636 2.456119 GGCGCTGTTGGTGATCTCG 61.456 63.158 7.64 0.0 0.0 4.04 R
3762 4493 0.247460 CTGATCGCTGTGACCCTTGA 59.753 55.000 0.00 0.0 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.266089 GCGACGCGAATAGACAACG 59.734 57.895 15.93 5.20 0.00 4.10
34 35 3.776656 GCGAATAGACAACGCGGT 58.223 55.556 12.47 0.00 42.65 5.68
35 36 2.075761 GCGAATAGACAACGCGGTT 58.924 52.632 12.47 0.00 42.65 4.44
36 37 0.024619 GCGAATAGACAACGCGGTTC 59.975 55.000 12.47 4.49 42.65 3.62
37 38 0.643820 CGAATAGACAACGCGGTTCC 59.356 55.000 12.47 0.00 0.00 3.62
38 39 1.734707 CGAATAGACAACGCGGTTCCT 60.735 52.381 12.47 5.57 0.00 3.36
39 40 1.659098 GAATAGACAACGCGGTTCCTG 59.341 52.381 12.47 1.75 0.00 3.86
40 41 0.108329 ATAGACAACGCGGTTCCTGG 60.108 55.000 12.47 0.00 0.00 4.45
41 42 1.466025 TAGACAACGCGGTTCCTGGT 61.466 55.000 12.47 0.00 0.00 4.00
42 43 2.590575 ACAACGCGGTTCCTGGTG 60.591 61.111 12.47 0.00 0.00 4.17
43 44 2.590575 CAACGCGGTTCCTGGTGT 60.591 61.111 12.47 0.00 0.00 4.16
44 45 1.301087 CAACGCGGTTCCTGGTGTA 60.301 57.895 12.47 0.00 0.00 2.90
45 46 1.301165 AACGCGGTTCCTGGTGTAC 60.301 57.895 12.47 0.00 0.00 2.90
46 47 2.030490 AACGCGGTTCCTGGTGTACA 62.030 55.000 12.47 0.00 0.00 2.90
47 48 2.025418 CGCGGTTCCTGGTGTACAC 61.025 63.158 18.01 18.01 0.00 2.90
48 49 2.025418 GCGGTTCCTGGTGTACACG 61.025 63.158 19.41 6.90 0.00 4.49
49 50 1.661480 CGGTTCCTGGTGTACACGA 59.339 57.895 19.41 14.99 0.00 4.35
50 51 0.245539 CGGTTCCTGGTGTACACGAT 59.754 55.000 19.41 0.00 0.00 3.73
51 52 1.722011 GGTTCCTGGTGTACACGATG 58.278 55.000 19.41 12.84 0.00 3.84
52 53 1.274167 GGTTCCTGGTGTACACGATGA 59.726 52.381 19.41 14.93 0.00 2.92
53 54 2.334838 GTTCCTGGTGTACACGATGAC 58.665 52.381 19.41 10.47 0.00 3.06
54 55 0.524414 TCCTGGTGTACACGATGACG 59.476 55.000 19.41 4.14 45.75 4.35
55 56 0.524414 CCTGGTGTACACGATGACGA 59.476 55.000 19.41 0.00 42.66 4.20
56 57 1.134367 CCTGGTGTACACGATGACGAT 59.866 52.381 19.41 0.00 42.66 3.73
57 58 2.451132 CTGGTGTACACGATGACGATC 58.549 52.381 19.41 3.26 42.66 3.69
58 59 1.133598 TGGTGTACACGATGACGATCC 59.866 52.381 19.41 2.52 42.66 3.36
59 60 1.463805 GTGTACACGATGACGATCCG 58.536 55.000 10.84 0.00 42.66 4.18
60 61 1.063027 GTGTACACGATGACGATCCGA 59.937 52.381 10.84 0.00 42.66 4.55
61 62 1.063027 TGTACACGATGACGATCCGAC 59.937 52.381 0.00 0.00 42.66 4.79
62 63 0.302589 TACACGATGACGATCCGACG 59.697 55.000 0.00 0.00 42.66 5.12
63 64 1.654440 CACGATGACGATCCGACGG 60.654 63.158 7.84 7.84 42.66 4.79
64 65 2.110967 ACGATGACGATCCGACGGT 61.111 57.895 14.79 0.67 42.66 4.83
65 66 1.654440 CGATGACGATCCGACGGTG 60.654 63.158 14.79 7.84 42.66 4.94
66 67 1.944676 GATGACGATCCGACGGTGC 60.945 63.158 14.79 6.23 37.61 5.01
67 68 2.607668 GATGACGATCCGACGGTGCA 62.608 60.000 14.79 6.57 37.61 4.57
68 69 2.579787 GACGATCCGACGGTGCAG 60.580 66.667 14.79 6.81 37.61 4.41
69 70 3.047718 GACGATCCGACGGTGCAGA 62.048 63.158 14.79 0.00 37.61 4.26
70 71 2.278206 CGATCCGACGGTGCAGAG 60.278 66.667 14.79 0.00 0.00 3.35
71 72 2.761195 CGATCCGACGGTGCAGAGA 61.761 63.158 14.79 0.00 0.00 3.10
72 73 1.226717 GATCCGACGGTGCAGAGAC 60.227 63.158 14.79 0.00 0.00 3.36
73 74 2.921538 GATCCGACGGTGCAGAGACG 62.922 65.000 14.79 6.31 0.00 4.18
76 77 4.702081 GACGGTGCAGAGACGCGT 62.702 66.667 13.85 13.85 33.35 6.01
79 80 3.406361 GGTGCAGAGACGCGTGTG 61.406 66.667 20.70 12.81 33.35 3.82
80 81 4.064491 GTGCAGAGACGCGTGTGC 62.064 66.667 20.70 22.84 36.42 4.57
81 82 4.284860 TGCAGAGACGCGTGTGCT 62.285 61.111 28.02 16.88 39.65 4.40
82 83 3.474034 GCAGAGACGCGTGTGCTC 61.474 66.667 20.70 17.92 39.65 4.26
83 84 2.256764 CAGAGACGCGTGTGCTCT 59.743 61.111 20.70 20.15 39.46 4.09
84 85 1.799519 CAGAGACGCGTGTGCTCTC 60.800 63.158 20.70 17.08 41.60 3.20
85 86 1.969064 AGAGACGCGTGTGCTCTCT 60.969 57.895 20.70 19.32 44.08 3.10
86 87 0.673956 AGAGACGCGTGTGCTCTCTA 60.674 55.000 20.70 0.00 45.52 2.43
87 88 0.168348 GAGACGCGTGTGCTCTCTAA 59.832 55.000 20.70 0.00 39.85 2.10
88 89 0.596577 AGACGCGTGTGCTCTCTAAA 59.403 50.000 20.70 0.00 39.65 1.85
89 90 1.000607 AGACGCGTGTGCTCTCTAAAA 60.001 47.619 20.70 0.00 39.65 1.52
90 91 1.124477 GACGCGTGTGCTCTCTAAAAC 59.876 52.381 20.70 0.00 39.65 2.43
91 92 1.136690 CGCGTGTGCTCTCTAAAACA 58.863 50.000 0.00 0.00 39.65 2.83
92 93 1.525197 CGCGTGTGCTCTCTAAAACAA 59.475 47.619 0.00 0.00 39.65 2.83
93 94 2.033236 CGCGTGTGCTCTCTAAAACAAA 60.033 45.455 0.00 0.00 39.65 2.83
94 95 3.289076 GCGTGTGCTCTCTAAAACAAAC 58.711 45.455 0.00 0.00 38.39 2.93
95 96 3.531982 CGTGTGCTCTCTAAAACAAACG 58.468 45.455 0.00 0.00 37.41 3.60
96 97 3.244345 CGTGTGCTCTCTAAAACAAACGA 59.756 43.478 0.00 0.00 44.53 3.85
97 98 4.606232 CGTGTGCTCTCTAAAACAAACGAG 60.606 45.833 0.00 0.00 44.53 4.18
98 99 3.247648 TGTGCTCTCTAAAACAAACGAGC 59.752 43.478 0.00 0.00 42.97 5.03
99 100 2.806244 TGCTCTCTAAAACAAACGAGCC 59.194 45.455 0.00 0.00 42.23 4.70
100 101 2.806244 GCTCTCTAAAACAAACGAGCCA 59.194 45.455 0.00 0.00 38.27 4.75
101 102 3.250040 GCTCTCTAAAACAAACGAGCCAA 59.750 43.478 0.00 0.00 38.27 4.52
102 103 4.773510 CTCTCTAAAACAAACGAGCCAAC 58.226 43.478 0.00 0.00 0.00 3.77
103 104 3.246699 TCTCTAAAACAAACGAGCCAACG 59.753 43.478 0.00 0.00 39.31 4.10
104 105 2.041244 CTAAAACAAACGAGCCAACGC 58.959 47.619 0.00 0.00 36.70 4.84
105 106 0.526739 AAAACAAACGAGCCAACGCC 60.527 50.000 0.00 0.00 36.70 5.68
106 107 2.344521 AAACAAACGAGCCAACGCCC 62.345 55.000 0.00 0.00 36.70 6.13
107 108 3.283684 CAAACGAGCCAACGCCCA 61.284 61.111 0.00 0.00 36.70 5.36
108 109 3.284449 AAACGAGCCAACGCCCAC 61.284 61.111 0.00 0.00 36.70 4.61
109 110 3.767630 AAACGAGCCAACGCCCACT 62.768 57.895 0.00 0.00 36.70 4.00
110 111 3.767630 AACGAGCCAACGCCCACTT 62.768 57.895 0.00 0.00 36.70 3.16
111 112 2.978010 CGAGCCAACGCCCACTTT 60.978 61.111 0.00 0.00 34.57 2.66
112 113 2.551912 CGAGCCAACGCCCACTTTT 61.552 57.895 0.00 0.00 34.57 2.27
113 114 1.739667 GAGCCAACGCCCACTTTTT 59.260 52.632 0.00 0.00 34.57 1.94
114 115 0.955905 GAGCCAACGCCCACTTTTTA 59.044 50.000 0.00 0.00 34.57 1.52
115 116 0.958822 AGCCAACGCCCACTTTTTAG 59.041 50.000 0.00 0.00 34.57 1.85
116 117 0.038618 GCCAACGCCCACTTTTTAGG 60.039 55.000 0.00 0.00 0.00 2.69
117 118 1.611519 CCAACGCCCACTTTTTAGGA 58.388 50.000 0.00 0.00 0.00 2.94
118 119 2.167662 CCAACGCCCACTTTTTAGGAT 58.832 47.619 0.00 0.00 0.00 3.24
119 120 2.560981 CCAACGCCCACTTTTTAGGATT 59.439 45.455 0.00 0.00 0.00 3.01
120 121 3.006430 CCAACGCCCACTTTTTAGGATTT 59.994 43.478 0.00 0.00 0.00 2.17
121 122 4.218852 CCAACGCCCACTTTTTAGGATTTA 59.781 41.667 0.00 0.00 0.00 1.40
122 123 5.399013 CAACGCCCACTTTTTAGGATTTAG 58.601 41.667 0.00 0.00 0.00 1.85
123 124 4.014406 ACGCCCACTTTTTAGGATTTAGG 58.986 43.478 0.00 0.00 0.00 2.69
124 125 4.014406 CGCCCACTTTTTAGGATTTAGGT 58.986 43.478 0.00 0.00 0.00 3.08
125 126 4.461431 CGCCCACTTTTTAGGATTTAGGTT 59.539 41.667 0.00 0.00 0.00 3.50
126 127 5.047590 CGCCCACTTTTTAGGATTTAGGTTT 60.048 40.000 0.00 0.00 0.00 3.27
127 128 6.517697 CGCCCACTTTTTAGGATTTAGGTTTT 60.518 38.462 0.00 0.00 0.00 2.43
128 129 7.221450 GCCCACTTTTTAGGATTTAGGTTTTT 58.779 34.615 0.00 0.00 0.00 1.94
323 324 1.378119 GGAACCGTCCATCCCAACC 60.378 63.158 0.00 0.00 44.26 3.77
324 325 1.377229 GAACCGTCCATCCCAACCA 59.623 57.895 0.00 0.00 0.00 3.67
327 328 2.753701 CGTCCATCCCAACCACCA 59.246 61.111 0.00 0.00 0.00 4.17
331 332 3.061848 CATCCCAACCACCACCGC 61.062 66.667 0.00 0.00 0.00 5.68
351 352 4.451150 GCACCGGACGGCTCATCA 62.451 66.667 9.46 0.00 39.32 3.07
496 497 1.538075 CGCTACCCACCGATTGTTTTT 59.462 47.619 0.00 0.00 0.00 1.94
499 504 3.610821 GCTACCCACCGATTGTTTTTCAC 60.611 47.826 0.00 0.00 0.00 3.18
553 561 3.515316 CTCGACCGCACCCACAAGT 62.515 63.158 0.00 0.00 0.00 3.16
614 627 2.516225 GCAGCGGGTGGGTAATCC 60.516 66.667 9.49 0.00 0.00 3.01
675 688 1.988539 TAATTCCACCAAGCCCCCTA 58.011 50.000 0.00 0.00 0.00 3.53
679 692 1.205460 TCCACCAAGCCCCCTAAGAC 61.205 60.000 0.00 0.00 0.00 3.01
683 696 0.107654 CCAAGCCCCCTAAGACTTCG 60.108 60.000 0.00 0.00 0.00 3.79
691 704 4.461198 CCCCCTAAGACTTCGCATATTTT 58.539 43.478 0.00 0.00 0.00 1.82
692 705 4.887655 CCCCCTAAGACTTCGCATATTTTT 59.112 41.667 0.00 0.00 0.00 1.94
694 707 5.357032 CCCCTAAGACTTCGCATATTTTTGT 59.643 40.000 0.00 0.00 0.00 2.83
700 713 4.408694 ACTTCGCATATTTTTGTAACGGC 58.591 39.130 0.00 0.00 0.00 5.68
710 723 0.871722 TTGTAACGGCACATGACAGC 59.128 50.000 0.00 0.00 0.00 4.40
784 797 1.732683 CGGATGCAAAAACGCCCAC 60.733 57.895 0.00 0.00 0.00 4.61
785 798 1.374125 GGATGCAAAAACGCCCACC 60.374 57.895 0.00 0.00 0.00 4.61
786 799 1.374125 GATGCAAAAACGCCCACCC 60.374 57.895 0.00 0.00 0.00 4.61
787 800 3.219645 ATGCAAAAACGCCCACCCG 62.220 57.895 0.00 0.00 0.00 5.28
927 949 3.414700 CGCGCTTCCGAGCTTTGT 61.415 61.111 5.56 0.00 46.96 2.83
948 976 3.951769 TTCGTCCTCCTCCCCCGAC 62.952 68.421 0.00 0.00 0.00 4.79
1035 1063 3.092511 ATCCACATCGGCCAGGCT 61.093 61.111 12.43 0.00 33.14 4.58
1220 1309 0.179124 GACTGCGACTGGTCTGATCC 60.179 60.000 0.00 0.00 0.00 3.36
1289 1382 1.230635 CGGTTGCTTCTGTGGGTCTG 61.231 60.000 0.00 0.00 0.00 3.51
1307 1400 4.262463 GGTCTGTCTGGTGTTGTGAAGATA 60.262 45.833 0.00 0.00 0.00 1.98
1314 1407 5.422012 TCTGGTGTTGTGAAGATAGCAGATA 59.578 40.000 0.00 0.00 39.92 1.98
1406 1500 9.124807 GTTCGAATTTGAATTTTAAGGTGTAGG 57.875 33.333 11.31 0.00 0.00 3.18
1416 1510 9.673454 GAATTTTAAGGTGTAGGTTTACTTGTG 57.327 33.333 0.00 0.00 0.00 3.33
1420 1514 4.891260 AGGTGTAGGTTTACTTGTGTAGC 58.109 43.478 0.00 0.00 0.00 3.58
1433 1527 1.667830 TGTAGCGCTGCAGTTCACC 60.668 57.895 24.92 1.78 0.00 4.02
1436 1530 2.099652 TAGCGCTGCAGTTCACCTGT 62.100 55.000 22.90 0.00 43.55 4.00
1438 1532 2.024918 CGCTGCAGTTCACCTGTTT 58.975 52.632 16.64 0.00 43.55 2.83
1440 1534 0.040958 GCTGCAGTTCACCTGTTTCG 60.041 55.000 16.64 0.00 43.55 3.46
1514 1618 1.297664 GTGGCAGATCTGATCAGTGC 58.702 55.000 27.04 22.33 0.00 4.40
1584 1699 6.879400 AGACATTGTAGAAGGACATAACCTC 58.121 40.000 0.00 0.00 39.62 3.85
1608 1723 9.817365 CTCTTCAATCTGTTACTTGTTACATTG 57.183 33.333 0.00 0.00 0.00 2.82
1671 1787 2.346766 TCACTGATTGGCACACACTT 57.653 45.000 0.00 0.00 39.29 3.16
1699 1816 1.702401 TGAAATGCCCTGTCCTGTACA 59.298 47.619 0.00 0.00 36.42 2.90
1730 1847 6.451064 TCTGTTCGAAATCTGCTAGATACA 57.549 37.500 0.00 0.00 32.89 2.29
1740 1858 9.571810 GAAATCTGCTAGATACAGTGATATCTG 57.428 37.037 18.08 0.00 41.17 2.90
1742 1860 8.648698 ATCTGCTAGATACAGTGATATCTGTT 57.351 34.615 18.08 0.00 44.92 3.16
1743 1861 9.746457 ATCTGCTAGATACAGTGATATCTGTTA 57.254 33.333 18.08 8.53 44.92 2.41
1744 1862 9.574516 TCTGCTAGATACAGTGATATCTGTTAA 57.425 33.333 18.08 5.05 44.92 2.01
1747 1865 9.081997 GCTAGATACAGTGATATCTGTTAATGC 57.918 37.037 18.08 11.70 44.92 3.56
1750 1868 9.433153 AGATACAGTGATATCTGTTAATGCATG 57.567 33.333 0.00 0.00 44.92 4.06
1751 1869 9.212641 GATACAGTGATATCTGTTAATGCATGT 57.787 33.333 0.00 0.00 44.92 3.21
1752 1870 7.488187 ACAGTGATATCTGTTAATGCATGTC 57.512 36.000 0.00 0.00 44.92 3.06
1753 1871 6.201615 ACAGTGATATCTGTTAATGCATGTCG 59.798 38.462 0.00 0.00 44.92 4.35
1754 1872 6.201615 CAGTGATATCTGTTAATGCATGTCGT 59.798 38.462 0.00 0.00 0.00 4.34
1755 1873 6.201615 AGTGATATCTGTTAATGCATGTCGTG 59.798 38.462 0.00 0.00 0.00 4.35
1756 1874 6.200854 GTGATATCTGTTAATGCATGTCGTGA 59.799 38.462 0.00 0.00 0.00 4.35
1757 1875 6.930722 TGATATCTGTTAATGCATGTCGTGAT 59.069 34.615 0.00 5.07 0.00 3.06
1758 1876 8.087750 TGATATCTGTTAATGCATGTCGTGATA 58.912 33.333 0.00 7.14 0.00 2.15
1759 1877 9.091784 GATATCTGTTAATGCATGTCGTGATAT 57.908 33.333 17.22 17.22 0.00 1.63
1762 1880 8.466086 TCTGTTAATGCATGTCGTGATATATC 57.534 34.615 0.00 5.73 0.00 1.63
1763 1881 7.545615 TCTGTTAATGCATGTCGTGATATATCC 59.454 37.037 10.25 1.27 0.00 2.59
1764 1882 7.386059 TGTTAATGCATGTCGTGATATATCCT 58.614 34.615 10.25 0.00 0.00 3.24
1765 1883 7.877612 TGTTAATGCATGTCGTGATATATCCTT 59.122 33.333 10.25 0.00 0.00 3.36
1766 1884 9.366216 GTTAATGCATGTCGTGATATATCCTTA 57.634 33.333 10.25 0.00 0.00 2.69
1767 1885 7.834068 AATGCATGTCGTGATATATCCTTAC 57.166 36.000 10.25 5.99 0.00 2.34
1768 1886 6.590234 TGCATGTCGTGATATATCCTTACT 57.410 37.500 10.25 0.00 0.00 2.24
1769 1887 6.389906 TGCATGTCGTGATATATCCTTACTG 58.610 40.000 10.25 2.88 0.00 2.74
1770 1888 5.807520 GCATGTCGTGATATATCCTTACTGG 59.192 44.000 10.25 3.88 37.10 4.00
1771 1889 6.572509 GCATGTCGTGATATATCCTTACTGGT 60.573 42.308 10.25 0.00 37.07 4.00
1772 1890 6.971726 TGTCGTGATATATCCTTACTGGTT 57.028 37.500 10.25 0.00 37.07 3.67
1773 1891 8.520351 CATGTCGTGATATATCCTTACTGGTTA 58.480 37.037 10.25 0.00 37.07 2.85
1774 1892 8.107399 TGTCGTGATATATCCTTACTGGTTAG 57.893 38.462 10.25 0.00 37.07 2.34
1775 1893 7.940688 TGTCGTGATATATCCTTACTGGTTAGA 59.059 37.037 10.25 0.00 37.07 2.10
1776 1894 8.958506 GTCGTGATATATCCTTACTGGTTAGAT 58.041 37.037 10.25 0.00 37.07 1.98
1777 1895 9.175312 TCGTGATATATCCTTACTGGTTAGATC 57.825 37.037 10.25 0.00 38.37 2.75
1778 1896 9.179909 CGTGATATATCCTTACTGGTTAGATCT 57.820 37.037 10.25 0.00 38.55 2.75
1783 1901 5.578005 TCCTTACTGGTTAGATCTGTTCG 57.422 43.478 5.18 0.00 37.07 3.95
1784 1902 5.258841 TCCTTACTGGTTAGATCTGTTCGA 58.741 41.667 5.18 0.00 37.07 3.71
1785 1903 5.713389 TCCTTACTGGTTAGATCTGTTCGAA 59.287 40.000 5.18 0.00 37.07 3.71
1786 1904 6.209986 TCCTTACTGGTTAGATCTGTTCGAAA 59.790 38.462 5.18 0.00 37.07 3.46
1787 1905 7.042335 CCTTACTGGTTAGATCTGTTCGAAAT 58.958 38.462 5.18 0.00 0.00 2.17
1788 1906 7.222999 CCTTACTGGTTAGATCTGTTCGAAATC 59.777 40.741 5.18 0.00 0.00 2.17
1789 1907 6.287589 ACTGGTTAGATCTGTTCGAAATCT 57.712 37.500 13.76 13.76 34.29 2.40
1790 1908 6.102663 ACTGGTTAGATCTGTTCGAAATCTG 58.897 40.000 17.31 6.22 32.25 2.90
1791 1909 4.870426 TGGTTAGATCTGTTCGAAATCTGC 59.130 41.667 17.31 11.32 32.25 4.26
1792 1910 5.112686 GGTTAGATCTGTTCGAAATCTGCT 58.887 41.667 17.31 8.22 32.25 4.24
1793 1911 6.127451 TGGTTAGATCTGTTCGAAATCTGCTA 60.127 38.462 17.31 7.41 32.25 3.49
1794 1912 6.419413 GGTTAGATCTGTTCGAAATCTGCTAG 59.581 42.308 17.31 2.24 32.25 3.42
1795 1913 5.843673 AGATCTGTTCGAAATCTGCTAGA 57.156 39.130 9.50 2.30 0.00 2.43
1796 1914 6.403866 AGATCTGTTCGAAATCTGCTAGAT 57.596 37.500 9.50 6.24 36.28 1.98
1797 1915 7.517614 AGATCTGTTCGAAATCTGCTAGATA 57.482 36.000 9.50 0.00 32.89 1.98
1798 1916 7.367285 AGATCTGTTCGAAATCTGCTAGATAC 58.633 38.462 9.50 0.00 32.89 2.24
1799 1917 6.451064 TCTGTTCGAAATCTGCTAGATACA 57.549 37.500 0.00 0.00 32.89 2.29
1800 1918 6.499172 TCTGTTCGAAATCTGCTAGATACAG 58.501 40.000 0.00 13.89 37.52 2.74
1801 1919 6.095580 TCTGTTCGAAATCTGCTAGATACAGT 59.904 38.462 0.00 0.00 37.48 3.55
1802 1920 6.036470 TGTTCGAAATCTGCTAGATACAGTG 58.964 40.000 0.00 0.00 32.89 3.66
1803 1921 6.127730 TGTTCGAAATCTGCTAGATACAGTGA 60.128 38.462 0.00 0.00 32.89 3.41
1804 1922 6.641169 TCGAAATCTGCTAGATACAGTGAT 57.359 37.500 0.00 0.00 32.89 3.06
1805 1923 7.745620 TCGAAATCTGCTAGATACAGTGATA 57.254 36.000 0.00 0.00 32.89 2.15
1806 1924 8.341892 TCGAAATCTGCTAGATACAGTGATAT 57.658 34.615 0.00 0.00 32.89 1.63
1807 1925 8.454894 TCGAAATCTGCTAGATACAGTGATATC 58.545 37.037 0.00 0.00 32.89 1.63
1808 1926 8.458052 CGAAATCTGCTAGATACAGTGATATCT 58.542 37.037 15.19 15.19 43.08 1.98
1925 2043 6.993902 TGCTGATGTTGCTATGAATTGATCTA 59.006 34.615 0.00 0.00 0.00 1.98
1974 2356 5.689383 TCCTGTTCTGTTGCTACAAAATC 57.311 39.130 1.93 0.00 32.92 2.17
1996 2378 9.853177 AAATCTAGTATATTTAGCTTTGCACCT 57.147 29.630 0.00 0.00 0.00 4.00
2008 2392 3.551485 GCTTTGCACCTTTTAACACTGTG 59.449 43.478 6.19 6.19 0.00 3.66
2055 2595 1.194781 AGATGCCCGGTGACAAGACT 61.195 55.000 0.00 0.00 0.00 3.24
2317 2858 6.058827 TGTGTGTAATGATGCCAATTATCG 57.941 37.500 0.00 0.00 0.00 2.92
2428 2994 1.959042 CAGACAACTGCACTGGTCTT 58.041 50.000 0.93 0.00 38.48 3.01
2440 3006 2.998316 CTGGTCTTCAGGGATTCCTC 57.002 55.000 2.01 0.00 42.67 3.71
2449 3015 3.107601 TCAGGGATTCCTCGTCTTCAAT 58.892 45.455 2.01 0.00 42.67 2.57
2500 3066 0.174617 GTTCTCTTCTCCTGGAGCGG 59.825 60.000 19.08 13.10 0.00 5.52
2772 3391 7.990917 TGCTTAGTACATGTTTTCTGTTTGAA 58.009 30.769 2.30 0.00 0.00 2.69
3512 4136 3.636153 TGAGTACTAGAGCAGCTGAGA 57.364 47.619 20.43 0.00 0.00 3.27
3551 4212 2.711542 CCCGAGTGGCTTTATCTGTTT 58.288 47.619 0.00 0.00 0.00 2.83
3566 4227 9.956720 CTTTATCTGTTTTCTGTCTGTTTGAAT 57.043 29.630 0.00 0.00 0.00 2.57
3568 4229 9.734620 TTATCTGTTTTCTGTCTGTTTGAATTG 57.265 29.630 0.00 0.00 0.00 2.32
3569 4230 7.389803 TCTGTTTTCTGTCTGTTTGAATTGA 57.610 32.000 0.00 0.00 0.00 2.57
3570 4231 7.825681 TCTGTTTTCTGTCTGTTTGAATTGAA 58.174 30.769 0.00 0.00 0.00 2.69
3651 4329 5.536161 ACCTTGGTCAATATGCATGTTATCC 59.464 40.000 10.16 14.25 0.00 2.59
3670 4349 1.208535 CCGGTTTGCCTACACCATAGA 59.791 52.381 0.00 0.00 31.84 1.98
3706 4391 5.009631 TCACCATTTCCCTGTTTCAGTATG 58.990 41.667 0.00 0.00 37.54 2.39
3732 4417 4.974368 TTGTTTCTTCGTGTGATTTGGT 57.026 36.364 0.00 0.00 0.00 3.67
3756 4442 1.037579 TGTCGTCGCCTGGATGATCT 61.038 55.000 0.00 0.00 42.45 2.75
3759 4445 1.202770 TCGTCGCCTGGATGATCTCTA 60.203 52.381 0.00 0.00 35.75 2.43
3762 4493 2.625790 GTCGCCTGGATGATCTCTACTT 59.374 50.000 0.00 0.00 0.00 2.24
3772 4503 5.452636 GGATGATCTCTACTTCAAGGGTCAC 60.453 48.000 0.00 0.00 0.00 3.67
3809 4540 4.002982 TCTTTGAAATGCGTCTGTGCTAT 58.997 39.130 0.00 0.00 35.36 2.97
3844 4587 4.628074 TGTAGCTTCCAGTCTGTAACAAC 58.372 43.478 0.00 0.00 0.00 3.32
3890 4633 0.326264 GTCCCTGCATCTGGTCTGTT 59.674 55.000 0.00 0.00 0.00 3.16
3891 4634 0.325933 TCCCTGCATCTGGTCTGTTG 59.674 55.000 0.00 0.00 0.00 3.33
3895 4638 2.551721 CCTGCATCTGGTCTGTTGAACT 60.552 50.000 0.00 0.00 0.00 3.01
3898 4641 3.316029 TGCATCTGGTCTGTTGAACTTTG 59.684 43.478 0.00 0.00 0.00 2.77
3906 4683 4.580580 GGTCTGTTGAACTTTGTCTCCAAT 59.419 41.667 0.00 0.00 0.00 3.16
3931 4708 0.178767 CATCGTCCCATCTCCAAGCA 59.821 55.000 0.00 0.00 0.00 3.91
3953 4730 0.245539 TACGTCTAGTGCCTGTTGCC 59.754 55.000 0.00 0.00 40.16 4.52
3976 4753 1.128692 CGCTGTCGGTTGAAATCTTCC 59.871 52.381 0.00 0.00 0.00 3.46
3986 4763 5.391310 CGGTTGAAATCTTCCTTGTCTGATG 60.391 44.000 0.00 0.00 0.00 3.07
3989 4766 4.456911 TGAAATCTTCCTTGTCTGATGCAC 59.543 41.667 0.00 0.00 0.00 4.57
3990 4767 2.479566 TCTTCCTTGTCTGATGCACC 57.520 50.000 0.00 0.00 0.00 5.01
4030 4819 0.174845 GTACTATGCGGACCTGTGCA 59.825 55.000 0.00 0.00 46.51 4.57
4071 4898 0.391228 AAACATGTGCCGTTTTCCCC 59.609 50.000 0.00 0.00 32.76 4.81
4076 4914 0.684805 TGTGCCGTTTTCCCCTGTTT 60.685 50.000 0.00 0.00 0.00 2.83
4099 4945 1.085715 AGTACTGAGACTGACCCCCT 58.914 55.000 0.00 0.00 0.00 4.79
4100 4946 1.433592 AGTACTGAGACTGACCCCCTT 59.566 52.381 0.00 0.00 0.00 3.95
4101 4947 1.826096 GTACTGAGACTGACCCCCTTC 59.174 57.143 0.00 0.00 0.00 3.46
4102 4948 0.545548 ACTGAGACTGACCCCCTTCC 60.546 60.000 0.00 0.00 0.00 3.46
4104 4950 0.119155 TGAGACTGACCCCCTTCCAT 59.881 55.000 0.00 0.00 0.00 3.41
4105 4951 1.364678 TGAGACTGACCCCCTTCCATA 59.635 52.381 0.00 0.00 0.00 2.74
4106 4952 2.225779 TGAGACTGACCCCCTTCCATAA 60.226 50.000 0.00 0.00 0.00 1.90
4107 4953 2.844348 GAGACTGACCCCCTTCCATAAA 59.156 50.000 0.00 0.00 0.00 1.40
4108 4954 3.459969 GAGACTGACCCCCTTCCATAAAT 59.540 47.826 0.00 0.00 0.00 1.40
4136 4982 1.070289 ACCACTCTTCTTTCACGTCCC 59.930 52.381 0.00 0.00 0.00 4.46
4157 5003 1.688735 TGCATTTCTCGAGATCCCGAT 59.311 47.619 17.44 3.20 37.96 4.18
4187 5033 3.248602 AGAAATATCAAAGATGCCGCGAC 59.751 43.478 8.23 0.00 0.00 5.19
4188 5034 2.238942 ATATCAAAGATGCCGCGACA 57.761 45.000 8.23 0.48 0.00 4.35
4189 5035 2.238942 TATCAAAGATGCCGCGACAT 57.761 45.000 7.91 7.91 0.00 3.06
4190 5036 2.238942 ATCAAAGATGCCGCGACATA 57.761 45.000 8.22 0.00 0.00 2.29
4192 5038 2.135139 TCAAAGATGCCGCGACATATC 58.865 47.619 8.22 5.86 0.00 1.63
4193 5039 1.195448 CAAAGATGCCGCGACATATCC 59.805 52.381 8.22 0.00 0.00 2.59
4194 5040 0.320771 AAGATGCCGCGACATATCCC 60.321 55.000 8.22 0.00 0.00 3.85
4195 5041 1.188219 AGATGCCGCGACATATCCCT 61.188 55.000 8.22 0.00 0.00 4.20
4196 5042 1.004560 ATGCCGCGACATATCCCTG 60.005 57.895 5.97 0.00 0.00 4.45
4197 5043 1.758440 ATGCCGCGACATATCCCTGT 61.758 55.000 5.97 0.00 0.00 4.00
4198 5044 1.956170 GCCGCGACATATCCCTGTG 60.956 63.158 8.23 0.00 0.00 3.66
4199 5045 1.739667 CCGCGACATATCCCTGTGA 59.260 57.895 8.23 0.00 0.00 3.58
4202 5048 0.104855 GCGACATATCCCTGTGAGCA 59.895 55.000 0.00 0.00 32.68 4.26
4204 5050 1.539065 CGACATATCCCTGTGAGCACC 60.539 57.143 0.00 0.00 0.00 5.01
4226 5097 4.260784 CCAGCAAGCTTGTCGATAAATACC 60.261 45.833 26.55 6.28 0.00 2.73
4228 5099 5.065218 CAGCAAGCTTGTCGATAAATACCTT 59.935 40.000 26.55 0.00 0.00 3.50
4245 5116 2.568509 ACCTTTCATCTTTTGGCCATGG 59.431 45.455 6.09 7.63 0.00 3.66
4257 5128 4.247781 CCATGGGCACTGGTCATC 57.752 61.111 2.85 0.00 0.00 2.92
4258 5129 1.820906 CCATGGGCACTGGTCATCG 60.821 63.158 2.85 0.00 0.00 3.84
4259 5130 1.221566 CATGGGCACTGGTCATCGA 59.778 57.895 0.00 0.00 0.00 3.59
4260 5131 1.091771 CATGGGCACTGGTCATCGAC 61.092 60.000 0.00 0.00 0.00 4.20
4291 5162 0.392327 GGCAGCCTCTTCTGAAGGTC 60.392 60.000 16.83 6.90 36.19 3.85
4328 5210 5.175856 CAGCACACTACTGTTTCTGTTCTAC 59.824 44.000 0.00 0.00 0.00 2.59
4337 5219 3.057456 TGTTTCTGTTCTACGAGAGCTCC 60.057 47.826 10.93 0.68 0.00 4.70
4341 5223 0.456628 GTTCTACGAGAGCTCCACCC 59.543 60.000 10.93 0.00 0.00 4.61
4372 5261 0.472352 TACTCCCACGGTTGGTTCCT 60.472 55.000 0.00 0.00 42.10 3.36
4373 5262 1.350310 ACTCCCACGGTTGGTTCCTT 61.350 55.000 0.00 0.00 42.10 3.36
4374 5263 0.605589 CTCCCACGGTTGGTTCCTTC 60.606 60.000 0.00 0.00 42.10 3.46
4375 5264 1.602605 CCCACGGTTGGTTCCTTCC 60.603 63.158 0.00 0.00 42.10 3.46
4402 5291 8.205131 GCCATAGCTTAGAGAGTAGACTATAC 57.795 42.308 0.00 0.00 35.50 1.47
4418 5323 9.465985 GTAGACTATACTTCTTTAGCAATCACC 57.534 37.037 0.00 0.00 0.00 4.02
4433 5338 2.708216 TCACCAATCAGTGTGTGTGT 57.292 45.000 0.00 0.00 38.91 3.72
4434 5339 2.287769 TCACCAATCAGTGTGTGTGTG 58.712 47.619 0.00 1.58 38.91 3.82
4437 5342 2.092968 ACCAATCAGTGTGTGTGTGTCT 60.093 45.455 0.00 0.00 0.00 3.41
4438 5343 2.545526 CCAATCAGTGTGTGTGTGTCTC 59.454 50.000 0.00 0.00 0.00 3.36
4439 5344 2.140065 ATCAGTGTGTGTGTGTCTCG 57.860 50.000 0.00 0.00 0.00 4.04
4440 5345 0.102300 TCAGTGTGTGTGTGTCTCGG 59.898 55.000 0.00 0.00 0.00 4.63
4480 5385 3.932089 ACATGTTTGTTTTGCCACAGTTC 59.068 39.130 0.00 0.00 29.55 3.01
4483 5388 3.256879 TGTTTGTTTTGCCACAGTTCTCA 59.743 39.130 0.00 0.00 0.00 3.27
4497 5402 3.622163 CAGTTCTCATGCTCCTGATTGAC 59.378 47.826 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.266089 CGTTGTCTATTCGCGTCGC 59.734 57.895 7.29 7.29 0.00 5.19
13 14 1.266089 GCGTTGTCTATTCGCGTCG 59.734 57.895 5.77 0.00 40.51 5.12
17 18 0.024619 GAACCGCGTTGTCTATTCGC 59.975 55.000 4.92 0.00 45.28 4.70
18 19 0.643820 GGAACCGCGTTGTCTATTCG 59.356 55.000 4.92 0.00 0.00 3.34
19 20 1.659098 CAGGAACCGCGTTGTCTATTC 59.341 52.381 4.92 0.00 0.00 1.75
20 21 1.674817 CCAGGAACCGCGTTGTCTATT 60.675 52.381 4.92 0.00 0.00 1.73
21 22 0.108329 CCAGGAACCGCGTTGTCTAT 60.108 55.000 4.92 0.00 0.00 1.98
22 23 1.290955 CCAGGAACCGCGTTGTCTA 59.709 57.895 4.92 0.00 0.00 2.59
23 24 2.030562 CCAGGAACCGCGTTGTCT 59.969 61.111 4.92 0.00 0.00 3.41
24 25 2.280592 ACCAGGAACCGCGTTGTC 60.281 61.111 4.92 0.00 0.00 3.18
25 26 2.030490 TACACCAGGAACCGCGTTGT 62.030 55.000 4.92 0.00 0.00 3.32
26 27 1.301087 TACACCAGGAACCGCGTTG 60.301 57.895 4.92 0.00 0.00 4.10
27 28 1.301165 GTACACCAGGAACCGCGTT 60.301 57.895 4.92 0.00 0.00 4.84
28 29 2.341176 GTACACCAGGAACCGCGT 59.659 61.111 4.92 0.00 0.00 6.01
29 30 2.025418 GTGTACACCAGGAACCGCG 61.025 63.158 15.42 0.00 0.00 6.46
30 31 2.025418 CGTGTACACCAGGAACCGC 61.025 63.158 20.11 0.00 0.00 5.68
31 32 0.245539 ATCGTGTACACCAGGAACCG 59.754 55.000 20.11 6.18 41.01 4.44
32 33 1.274167 TCATCGTGTACACCAGGAACC 59.726 52.381 20.11 0.00 41.01 3.62
33 34 2.334838 GTCATCGTGTACACCAGGAAC 58.665 52.381 20.11 8.60 41.01 3.62
34 35 1.068125 CGTCATCGTGTACACCAGGAA 60.068 52.381 20.11 1.65 41.01 3.36
35 36 0.524414 CGTCATCGTGTACACCAGGA 59.476 55.000 20.11 12.18 41.81 3.86
36 37 0.524414 TCGTCATCGTGTACACCAGG 59.476 55.000 20.11 9.76 38.33 4.45
37 38 2.451132 GATCGTCATCGTGTACACCAG 58.549 52.381 20.11 10.13 38.33 4.00
38 39 1.133598 GGATCGTCATCGTGTACACCA 59.866 52.381 20.11 8.25 38.33 4.17
39 40 1.836383 GGATCGTCATCGTGTACACC 58.164 55.000 20.11 4.85 38.33 4.16
40 41 1.063027 TCGGATCGTCATCGTGTACAC 59.937 52.381 16.32 16.32 38.33 2.90
41 42 1.063027 GTCGGATCGTCATCGTGTACA 59.937 52.381 0.00 0.00 38.33 2.90
42 43 1.739618 GTCGGATCGTCATCGTGTAC 58.260 55.000 0.00 0.00 38.33 2.90
43 44 0.302589 CGTCGGATCGTCATCGTGTA 59.697 55.000 0.00 0.00 38.33 2.90
44 45 1.062047 CGTCGGATCGTCATCGTGT 59.938 57.895 0.00 0.00 38.33 4.49
45 46 1.654440 CCGTCGGATCGTCATCGTG 60.654 63.158 4.91 0.00 38.33 4.35
46 47 2.110967 ACCGTCGGATCGTCATCGT 61.111 57.895 20.51 0.00 38.33 3.73
47 48 1.654440 CACCGTCGGATCGTCATCG 60.654 63.158 20.51 0.00 38.55 3.84
48 49 1.944676 GCACCGTCGGATCGTCATC 60.945 63.158 20.51 0.00 0.00 2.92
49 50 2.104331 GCACCGTCGGATCGTCAT 59.896 61.111 20.51 0.00 0.00 3.06
50 51 3.336715 CTGCACCGTCGGATCGTCA 62.337 63.158 20.51 6.87 0.00 4.35
51 52 2.579787 CTGCACCGTCGGATCGTC 60.580 66.667 20.51 2.33 0.00 4.20
52 53 3.052620 CTCTGCACCGTCGGATCGT 62.053 63.158 20.51 0.00 0.00 3.73
53 54 2.278206 CTCTGCACCGTCGGATCG 60.278 66.667 20.51 7.02 0.00 3.69
54 55 1.226717 GTCTCTGCACCGTCGGATC 60.227 63.158 20.51 9.39 0.00 3.36
55 56 2.885861 GTCTCTGCACCGTCGGAT 59.114 61.111 20.51 0.00 0.00 4.18
56 57 3.733960 CGTCTCTGCACCGTCGGA 61.734 66.667 20.51 0.00 0.00 4.55
59 60 4.702081 ACGCGTCTCTGCACCGTC 62.702 66.667 5.58 0.00 34.15 4.79
62 63 3.406361 CACACGCGTCTCTGCACC 61.406 66.667 9.86 0.00 34.15 5.01
63 64 4.064491 GCACACGCGTCTCTGCAC 62.064 66.667 22.02 1.59 34.15 4.57
64 65 4.284860 AGCACACGCGTCTCTGCA 62.285 61.111 26.29 0.00 45.49 4.41
65 66 3.474034 GAGCACACGCGTCTCTGC 61.474 66.667 20.25 20.25 45.49 4.26
66 67 1.799519 GAGAGCACACGCGTCTCTG 60.800 63.158 27.54 16.44 45.49 3.35
67 68 0.673956 TAGAGAGCACACGCGTCTCT 60.674 55.000 24.07 24.07 45.98 3.10
68 69 0.168348 TTAGAGAGCACACGCGTCTC 59.832 55.000 9.86 14.01 45.49 3.36
69 70 0.596577 TTTAGAGAGCACACGCGTCT 59.403 50.000 9.86 2.88 45.49 4.18
70 71 1.124477 GTTTTAGAGAGCACACGCGTC 59.876 52.381 9.86 0.00 45.49 5.19
71 72 1.137513 GTTTTAGAGAGCACACGCGT 58.862 50.000 5.58 5.58 45.49 6.01
72 73 1.136690 TGTTTTAGAGAGCACACGCG 58.863 50.000 3.53 3.53 45.49 6.01
73 74 3.289076 GTTTGTTTTAGAGAGCACACGC 58.711 45.455 0.00 0.00 38.99 5.34
74 75 3.244345 TCGTTTGTTTTAGAGAGCACACG 59.756 43.478 0.00 0.00 36.67 4.49
75 76 4.762809 CTCGTTTGTTTTAGAGAGCACAC 58.237 43.478 0.00 0.00 32.84 3.82
80 81 4.608445 CGTTGGCTCGTTTGTTTTAGAGAG 60.608 45.833 0.00 0.00 32.84 3.20
81 82 3.246699 CGTTGGCTCGTTTGTTTTAGAGA 59.753 43.478 0.00 0.00 32.84 3.10
82 83 3.541711 CGTTGGCTCGTTTGTTTTAGAG 58.458 45.455 0.00 0.00 0.00 2.43
83 84 2.286536 GCGTTGGCTCGTTTGTTTTAGA 60.287 45.455 4.88 0.00 35.83 2.10
84 85 2.041244 GCGTTGGCTCGTTTGTTTTAG 58.959 47.619 4.88 0.00 35.83 1.85
85 86 1.268640 GGCGTTGGCTCGTTTGTTTTA 60.269 47.619 4.88 0.00 39.81 1.52
86 87 0.526739 GGCGTTGGCTCGTTTGTTTT 60.527 50.000 4.88 0.00 39.81 2.43
87 88 1.065109 GGCGTTGGCTCGTTTGTTT 59.935 52.632 4.88 0.00 39.81 2.83
88 89 2.719354 GGCGTTGGCTCGTTTGTT 59.281 55.556 4.88 0.00 39.81 2.83
89 90 3.284449 GGGCGTTGGCTCGTTTGT 61.284 61.111 4.88 0.00 39.81 2.83
90 91 3.283684 TGGGCGTTGGCTCGTTTG 61.284 61.111 4.88 0.00 45.05 2.93
91 92 3.284449 GTGGGCGTTGGCTCGTTT 61.284 61.111 4.88 0.00 45.05 3.60
92 93 3.767630 AAGTGGGCGTTGGCTCGTT 62.768 57.895 4.88 0.00 45.05 3.85
93 94 3.767630 AAAGTGGGCGTTGGCTCGT 62.768 57.895 4.88 0.00 45.05 4.18
94 95 2.070654 AAAAAGTGGGCGTTGGCTCG 62.071 55.000 0.00 0.00 45.05 5.03
95 96 0.955905 TAAAAAGTGGGCGTTGGCTC 59.044 50.000 0.00 0.00 41.28 4.70
96 97 0.958822 CTAAAAAGTGGGCGTTGGCT 59.041 50.000 0.00 0.00 39.81 4.75
97 98 0.038618 CCTAAAAAGTGGGCGTTGGC 60.039 55.000 0.00 0.00 38.90 4.52
98 99 1.611519 TCCTAAAAAGTGGGCGTTGG 58.388 50.000 0.00 0.00 0.00 3.77
99 100 3.934457 AATCCTAAAAAGTGGGCGTTG 57.066 42.857 0.00 0.00 0.00 4.10
100 101 4.461431 CCTAAATCCTAAAAAGTGGGCGTT 59.539 41.667 0.00 0.00 0.00 4.84
101 102 4.014406 CCTAAATCCTAAAAAGTGGGCGT 58.986 43.478 0.00 0.00 0.00 5.68
102 103 4.014406 ACCTAAATCCTAAAAAGTGGGCG 58.986 43.478 0.00 0.00 0.00 6.13
103 104 5.995565 AACCTAAATCCTAAAAAGTGGGC 57.004 39.130 0.00 0.00 0.00 5.36
141 142 1.104630 CCGTGGAGGAGGAGTACTTC 58.895 60.000 0.00 0.00 45.00 3.01
150 151 3.691342 TGAACGGCCGTGGAGGAG 61.691 66.667 34.95 0.00 45.00 3.69
220 221 1.585006 GAGCGGGAGAACGAACTGA 59.415 57.895 0.00 0.00 35.47 3.41
222 223 2.647158 GGGAGCGGGAGAACGAACT 61.647 63.158 0.00 0.00 35.47 3.01
483 484 6.580963 TCAAAATGTGAAAAACAATCGGTG 57.419 33.333 0.00 0.00 43.61 4.94
521 526 1.471676 GGTCGAGCTGGGTTGATGTAG 60.472 57.143 7.51 0.00 0.00 2.74
553 561 3.935872 GTTGCGAGCGTGTGTGCA 61.936 61.111 0.00 0.00 37.31 4.57
614 627 1.078143 GTTAGCACCTGGCCAGAGG 60.078 63.158 34.91 24.63 46.50 3.69
624 637 1.128513 GCACGCTTTTTGTTAGCACC 58.871 50.000 0.00 0.00 38.55 5.01
675 688 6.311723 CCGTTACAAAAATATGCGAAGTCTT 58.688 36.000 0.00 0.00 0.00 3.01
679 692 4.262045 GTGCCGTTACAAAAATATGCGAAG 59.738 41.667 0.00 0.00 0.00 3.79
683 696 5.004345 GTCATGTGCCGTTACAAAAATATGC 59.996 40.000 0.00 0.00 33.69 3.14
691 704 0.871722 GCTGTCATGTGCCGTTACAA 59.128 50.000 0.00 0.00 33.69 2.41
692 705 0.953471 GGCTGTCATGTGCCGTTACA 60.953 55.000 10.30 0.00 39.71 2.41
694 707 4.294523 GGCTGTCATGTGCCGTTA 57.705 55.556 10.30 0.00 39.71 3.18
700 713 1.741706 GTTGGATCAGGCTGTCATGTG 59.258 52.381 15.27 0.00 0.00 3.21
710 723 0.611896 GGTGGTTGGGTTGGATCAGG 60.612 60.000 0.00 0.00 0.00 3.86
784 797 4.547367 GCGAAGGGATGGGACGGG 62.547 72.222 0.00 0.00 0.00 5.28
785 798 4.547367 GGCGAAGGGATGGGACGG 62.547 72.222 0.00 0.00 0.00 4.79
786 799 4.547367 GGGCGAAGGGATGGGACG 62.547 72.222 0.00 0.00 0.00 4.79
787 800 4.547367 CGGGCGAAGGGATGGGAC 62.547 72.222 0.00 0.00 0.00 4.46
927 949 2.363361 GGGGAGGAGGACGAAGGA 59.637 66.667 0.00 0.00 0.00 3.36
948 976 2.105930 GCTACGCTGCTGGAGAGG 59.894 66.667 0.00 0.00 0.00 3.69
1035 1063 1.324740 CGTTCCCGACCTGGATACCA 61.325 60.000 0.00 0.00 42.00 3.25
1108 1161 0.034477 GATCAAGCGGGGAAAGGGAA 60.034 55.000 0.00 0.00 0.00 3.97
1109 1162 0.914417 AGATCAAGCGGGGAAAGGGA 60.914 55.000 0.00 0.00 0.00 4.20
1220 1309 0.036388 TCCCCTTCTAGCAAACGCAG 60.036 55.000 0.00 0.00 0.00 5.18
1289 1382 3.664107 TGCTATCTTCACAACACCAGAC 58.336 45.455 0.00 0.00 0.00 3.51
1307 1400 9.994432 CTAAAATTCAAATTCGAACTATCTGCT 57.006 29.630 0.00 0.00 0.00 4.24
1314 1407 9.280174 TCTACACCTAAAATTCAAATTCGAACT 57.720 29.630 0.00 0.00 0.00 3.01
1344 1438 2.271800 GAACTGCAGCGCTATACAAGT 58.728 47.619 15.27 6.70 0.00 3.16
1406 1500 1.529438 TGCAGCGCTACACAAGTAAAC 59.471 47.619 10.99 0.00 0.00 2.01
1416 1510 3.169198 GGTGAACTGCAGCGCTAC 58.831 61.111 15.27 4.60 34.99 3.58
1433 1527 2.034558 ACAGAATTGCAACCCGAAACAG 59.965 45.455 0.00 0.00 0.00 3.16
1436 1530 3.366883 GCATACAGAATTGCAACCCGAAA 60.367 43.478 0.00 0.00 38.72 3.46
1438 1532 1.742831 GCATACAGAATTGCAACCCGA 59.257 47.619 0.00 0.00 38.72 5.14
1440 1534 1.742831 TCGCATACAGAATTGCAACCC 59.257 47.619 0.00 0.00 38.80 4.11
1563 1678 7.331026 TGAAGAGGTTATGTCCTTCTACAATG 58.669 38.462 0.00 0.00 38.02 2.82
1584 1699 8.783093 TCCAATGTAACAAGTAACAGATTGAAG 58.217 33.333 0.00 0.00 0.00 3.02
1608 1723 0.450583 TCTACGTCATGTGAGCGTCC 59.549 55.000 11.74 0.00 39.64 4.79
1671 1787 3.431486 GGACAGGGCATTTCAAACAAACA 60.431 43.478 0.00 0.00 0.00 2.83
1699 1816 7.856145 AGCAGATTTCGAACAGATCTAAATT 57.144 32.000 9.85 0.00 34.56 1.82
1730 1847 6.201615 CACGACATGCATTAACAGATATCACT 59.798 38.462 5.32 0.00 0.00 3.41
1740 1858 7.834068 AGGATATATCACGACATGCATTAAC 57.166 36.000 14.60 0.00 0.00 2.01
1741 1859 9.366216 GTAAGGATATATCACGACATGCATTAA 57.634 33.333 14.60 0.00 0.00 1.40
1742 1860 8.749354 AGTAAGGATATATCACGACATGCATTA 58.251 33.333 14.60 0.00 0.00 1.90
1743 1861 7.547019 CAGTAAGGATATATCACGACATGCATT 59.453 37.037 14.60 0.00 0.00 3.56
1744 1862 7.038048 CAGTAAGGATATATCACGACATGCAT 58.962 38.462 14.60 0.00 0.00 3.96
1745 1863 6.389906 CAGTAAGGATATATCACGACATGCA 58.610 40.000 14.60 0.00 0.00 3.96
1746 1864 5.807520 CCAGTAAGGATATATCACGACATGC 59.192 44.000 14.60 0.00 41.22 4.06
1747 1865 6.925211 ACCAGTAAGGATATATCACGACATG 58.075 40.000 14.60 5.77 41.22 3.21
1748 1866 7.540474 AACCAGTAAGGATATATCACGACAT 57.460 36.000 14.60 0.00 41.22 3.06
1749 1867 6.971726 AACCAGTAAGGATATATCACGACA 57.028 37.500 14.60 0.00 41.22 4.35
1750 1868 8.332996 TCTAACCAGTAAGGATATATCACGAC 57.667 38.462 14.60 8.21 41.22 4.34
1751 1869 9.175312 GATCTAACCAGTAAGGATATATCACGA 57.825 37.037 14.60 0.00 41.22 4.35
1752 1870 9.179909 AGATCTAACCAGTAAGGATATATCACG 57.820 37.037 14.60 2.07 41.22 4.35
1757 1875 9.011095 CGAACAGATCTAACCAGTAAGGATATA 57.989 37.037 0.00 0.00 41.22 0.86
1758 1876 7.724506 TCGAACAGATCTAACCAGTAAGGATAT 59.275 37.037 0.00 0.00 41.22 1.63
1759 1877 7.058525 TCGAACAGATCTAACCAGTAAGGATA 58.941 38.462 0.00 0.00 41.22 2.59
1760 1878 5.892119 TCGAACAGATCTAACCAGTAAGGAT 59.108 40.000 0.00 0.00 41.22 3.24
1761 1879 5.258841 TCGAACAGATCTAACCAGTAAGGA 58.741 41.667 0.00 0.00 41.22 3.36
1762 1880 5.578005 TCGAACAGATCTAACCAGTAAGG 57.422 43.478 0.00 0.00 45.67 2.69
1763 1881 7.976734 AGATTTCGAACAGATCTAACCAGTAAG 59.023 37.037 8.71 0.00 0.00 2.34
1764 1882 7.759886 CAGATTTCGAACAGATCTAACCAGTAA 59.240 37.037 9.85 0.00 0.00 2.24
1765 1883 7.258441 CAGATTTCGAACAGATCTAACCAGTA 58.742 38.462 9.85 0.00 0.00 2.74
1766 1884 6.102663 CAGATTTCGAACAGATCTAACCAGT 58.897 40.000 9.85 0.00 0.00 4.00
1767 1885 5.006165 GCAGATTTCGAACAGATCTAACCAG 59.994 44.000 9.85 0.98 0.00 4.00
1768 1886 4.870426 GCAGATTTCGAACAGATCTAACCA 59.130 41.667 9.85 0.00 0.00 3.67
1769 1887 5.112686 AGCAGATTTCGAACAGATCTAACC 58.887 41.667 9.85 3.71 0.00 2.85
1770 1888 7.197017 TCTAGCAGATTTCGAACAGATCTAAC 58.803 38.462 9.85 6.50 0.00 2.34
1771 1889 7.334844 TCTAGCAGATTTCGAACAGATCTAA 57.665 36.000 9.85 0.78 0.00 2.10
1772 1890 6.944234 TCTAGCAGATTTCGAACAGATCTA 57.056 37.500 9.85 3.80 0.00 1.98
1773 1891 5.843673 TCTAGCAGATTTCGAACAGATCT 57.156 39.130 0.00 0.55 0.00 2.75
1774 1892 7.142021 TGTATCTAGCAGATTTCGAACAGATC 58.858 38.462 0.00 0.00 36.20 2.75
1775 1893 7.043961 TGTATCTAGCAGATTTCGAACAGAT 57.956 36.000 0.00 0.86 36.20 2.90
1776 1894 6.095580 ACTGTATCTAGCAGATTTCGAACAGA 59.904 38.462 20.65 1.26 38.01 3.41
1777 1895 6.198029 CACTGTATCTAGCAGATTTCGAACAG 59.802 42.308 16.27 16.27 39.98 3.16
1778 1896 6.036470 CACTGTATCTAGCAGATTTCGAACA 58.964 40.000 0.00 0.00 36.20 3.18
1779 1897 6.266323 TCACTGTATCTAGCAGATTTCGAAC 58.734 40.000 0.00 0.00 36.20 3.95
1780 1898 6.451064 TCACTGTATCTAGCAGATTTCGAA 57.549 37.500 0.00 0.00 36.20 3.71
1781 1899 6.641169 ATCACTGTATCTAGCAGATTTCGA 57.359 37.500 3.21 0.00 36.20 3.71
1782 1900 8.458052 AGATATCACTGTATCTAGCAGATTTCG 58.542 37.037 5.32 0.00 39.13 3.46
1783 1901 9.571810 CAGATATCACTGTATCTAGCAGATTTC 57.428 37.037 5.32 0.00 38.93 2.17
1798 1916 5.333111 CGACATGCATGAACAGATATCACTG 60.333 44.000 32.75 2.21 42.78 3.66
1799 1917 4.748600 CGACATGCATGAACAGATATCACT 59.251 41.667 32.75 5.45 0.00 3.41
1800 1918 4.509230 ACGACATGCATGAACAGATATCAC 59.491 41.667 32.75 7.81 0.00 3.06
1801 1919 4.508861 CACGACATGCATGAACAGATATCA 59.491 41.667 32.75 0.00 0.00 2.15
1802 1920 4.746611 TCACGACATGCATGAACAGATATC 59.253 41.667 32.75 15.56 0.00 1.63
1803 1921 4.696455 TCACGACATGCATGAACAGATAT 58.304 39.130 32.75 7.85 0.00 1.63
1804 1922 4.122143 TCACGACATGCATGAACAGATA 57.878 40.909 32.75 8.97 0.00 1.98
1805 1923 2.976589 TCACGACATGCATGAACAGAT 58.023 42.857 32.75 9.47 0.00 2.90
1806 1924 2.453983 TCACGACATGCATGAACAGA 57.546 45.000 32.75 20.11 0.00 3.41
1807 1925 6.183360 GGATATATCACGACATGCATGAACAG 60.183 42.308 32.75 20.35 0.00 3.16
1808 1926 5.639082 GGATATATCACGACATGCATGAACA 59.361 40.000 32.75 11.71 0.00 3.18
1890 2008 8.344831 TCATAGCAACATCAGCATTGTAATAAC 58.655 33.333 0.00 0.00 0.00 1.89
1891 2009 8.449251 TCATAGCAACATCAGCATTGTAATAA 57.551 30.769 0.00 0.00 0.00 1.40
1892 2010 8.449251 TTCATAGCAACATCAGCATTGTAATA 57.551 30.769 0.00 0.00 0.00 0.98
1901 2019 6.315091 AGATCAATTCATAGCAACATCAGC 57.685 37.500 0.00 0.00 0.00 4.26
1925 2043 8.436046 AACATTCACAAAACAGTTTGCATTAT 57.564 26.923 0.00 0.00 46.84 1.28
1996 2378 5.327737 AGGGGGATTACACAGTGTTAAAA 57.672 39.130 12.53 0.03 0.00 1.52
2008 2392 1.037579 GGCTGCACAAGGGGGATTAC 61.038 60.000 0.50 0.00 0.00 1.89
2055 2595 0.625316 CATCATCACCTCCCCCAACA 59.375 55.000 0.00 0.00 0.00 3.33
2317 2858 0.179145 GCCACATGATCAGCAACAGC 60.179 55.000 0.00 0.00 0.00 4.40
2428 2994 2.231716 TGAAGACGAGGAATCCCTGA 57.768 50.000 0.00 0.00 44.53 3.86
2440 3006 1.466167 CCTCCAACAGCATTGAAGACG 59.534 52.381 2.46 0.00 0.00 4.18
2449 3015 0.179020 CAGTTCCACCTCCAACAGCA 60.179 55.000 0.00 0.00 0.00 4.41
2500 3066 5.078411 TCTTTCCATAGTCAACAGAGAGC 57.922 43.478 0.00 0.00 0.00 4.09
2772 3391 9.618890 ATTAGACAGTGCAACATATATCAAACT 57.381 29.630 0.00 0.00 41.43 2.66
2826 3450 4.065088 TGACCTGCAGATTAGTTGTTCAC 58.935 43.478 17.39 0.00 0.00 3.18
2937 3561 3.011032 AGGAGGAAAGCATGAAGTGGATT 59.989 43.478 0.00 0.00 0.00 3.01
3012 3636 2.456119 GGCGCTGTTGGTGATCTCG 61.456 63.158 7.64 0.00 0.00 4.04
3512 4136 1.590932 GCAGATCATCAGGTCGCAAT 58.409 50.000 0.00 0.00 0.00 3.56
3551 4212 7.010367 GCAAACATTCAATTCAAACAGACAGAA 59.990 33.333 0.00 0.00 0.00 3.02
3566 4227 2.495270 ACACCACACAGCAAACATTCAA 59.505 40.909 0.00 0.00 0.00 2.69
3567 4228 2.098614 ACACCACACAGCAAACATTCA 58.901 42.857 0.00 0.00 0.00 2.57
3568 4229 2.869233 ACACCACACAGCAAACATTC 57.131 45.000 0.00 0.00 0.00 2.67
3569 4230 3.260740 CAAACACCACACAGCAAACATT 58.739 40.909 0.00 0.00 0.00 2.71
3570 4231 2.418471 CCAAACACCACACAGCAAACAT 60.418 45.455 0.00 0.00 0.00 2.71
3651 4329 2.684001 TCTATGGTGTAGGCAAACCG 57.316 50.000 0.00 0.00 42.76 4.44
3670 4349 1.781786 ATGGTGACGGAGCAGTAGAT 58.218 50.000 0.00 0.00 34.93 1.98
3706 4391 6.359617 CCAAATCACACGAAGAAACAATACAC 59.640 38.462 0.00 0.00 0.00 2.90
3732 4417 2.107041 ATCCAGGCGACGACACCAAA 62.107 55.000 2.19 0.00 0.00 3.28
3756 4442 1.272490 CGCTGTGACCCTTGAAGTAGA 59.728 52.381 0.00 0.00 0.00 2.59
3759 4445 0.687354 ATCGCTGTGACCCTTGAAGT 59.313 50.000 0.00 0.00 0.00 3.01
3762 4493 0.247460 CTGATCGCTGTGACCCTTGA 59.753 55.000 0.00 0.00 0.00 3.02
3772 4503 1.016130 AAAGACACCGCTGATCGCTG 61.016 55.000 7.71 4.28 36.73 5.18
3782 4513 1.531149 AGACGCATTTCAAAGACACCG 59.469 47.619 0.00 0.00 0.00 4.94
3789 4520 3.670359 GCATAGCACAGACGCATTTCAAA 60.670 43.478 0.00 0.00 0.00 2.69
3809 4540 3.399330 GAAGCTACAACAGTTACAGGCA 58.601 45.455 0.00 0.00 0.00 4.75
3844 4587 1.297664 GGCTATGCAGTTCAGCTCAG 58.702 55.000 10.90 0.00 35.60 3.35
3898 4641 3.491104 GGGACGATGACTGTATTGGAGAC 60.491 52.174 0.00 0.00 0.00 3.36
3906 4683 2.307768 GGAGATGGGACGATGACTGTA 58.692 52.381 0.00 0.00 0.00 2.74
3931 4708 3.978687 GCAACAGGCACTAGACGTATAT 58.021 45.455 0.00 0.00 43.97 0.86
3953 4730 2.069273 AGATTTCAACCGACAGCGAAG 58.931 47.619 0.00 0.00 40.82 3.79
3986 4763 2.031333 CACAAGAGAGAAAGCAAGGTGC 60.031 50.000 0.00 0.00 45.46 5.01
3989 4766 2.502295 AGCACAAGAGAGAAAGCAAGG 58.498 47.619 0.00 0.00 0.00 3.61
3990 4767 3.314635 ACAAGCACAAGAGAGAAAGCAAG 59.685 43.478 0.00 0.00 0.00 4.01
4030 4819 0.460311 CGCTACCACTTTCCTCCGAT 59.540 55.000 0.00 0.00 0.00 4.18
4071 4898 5.463724 GGTCAGTCTCAGTACTTGAAAACAG 59.536 44.000 0.00 0.00 34.81 3.16
4076 4914 2.897969 GGGGTCAGTCTCAGTACTTGAA 59.102 50.000 0.00 0.00 34.81 2.69
4099 4945 9.396022 GAAGAGTGGTAGAAATGATTTATGGAA 57.604 33.333 0.00 0.00 0.00 3.53
4100 4946 8.772250 AGAAGAGTGGTAGAAATGATTTATGGA 58.228 33.333 0.00 0.00 0.00 3.41
4101 4947 8.970859 AGAAGAGTGGTAGAAATGATTTATGG 57.029 34.615 0.00 0.00 0.00 2.74
4105 4951 8.787852 GTGAAAGAAGAGTGGTAGAAATGATTT 58.212 33.333 0.00 0.00 0.00 2.17
4106 4952 7.118390 CGTGAAAGAAGAGTGGTAGAAATGATT 59.882 37.037 0.00 0.00 0.00 2.57
4107 4953 6.591834 CGTGAAAGAAGAGTGGTAGAAATGAT 59.408 38.462 0.00 0.00 0.00 2.45
4108 4954 5.926542 CGTGAAAGAAGAGTGGTAGAAATGA 59.073 40.000 0.00 0.00 0.00 2.57
4136 4982 1.067669 TCGGGATCTCGAGAAATGCAG 59.932 52.381 20.91 10.19 34.82 4.41
4157 5003 7.439356 CGGCATCTTTGATATTTCTCTGAACTA 59.561 37.037 0.00 0.00 0.00 2.24
4187 5033 1.813092 GCTGGTGCTCACAGGGATATG 60.813 57.143 2.21 0.00 36.48 1.78
4188 5034 0.471617 GCTGGTGCTCACAGGGATAT 59.528 55.000 2.21 0.00 36.48 1.63
4189 5035 0.909133 TGCTGGTGCTCACAGGGATA 60.909 55.000 2.21 0.00 40.48 2.59
4190 5036 1.782201 TTGCTGGTGCTCACAGGGAT 61.782 55.000 2.21 0.00 40.48 3.85
4192 5038 1.970114 CTTGCTGGTGCTCACAGGG 60.970 63.158 2.21 0.00 40.48 4.45
4193 5039 2.623915 GCTTGCTGGTGCTCACAGG 61.624 63.158 2.21 0.00 40.48 4.00
4194 5040 1.170919 AAGCTTGCTGGTGCTCACAG 61.171 55.000 0.00 0.00 38.75 3.66
4195 5041 1.152902 AAGCTTGCTGGTGCTCACA 60.153 52.632 0.00 0.00 38.75 3.58
4196 5042 1.285023 CAAGCTTGCTGGTGCTCAC 59.715 57.895 14.65 0.00 38.75 3.51
4197 5043 1.152902 ACAAGCTTGCTGGTGCTCA 60.153 52.632 26.27 0.00 38.75 4.26
4198 5044 1.578423 GACAAGCTTGCTGGTGCTC 59.422 57.895 26.27 10.58 38.75 4.26
4199 5045 2.256591 CGACAAGCTTGCTGGTGCT 61.257 57.895 26.27 4.64 41.82 4.40
4202 5048 2.472695 TTATCGACAAGCTTGCTGGT 57.527 45.000 26.27 16.90 0.00 4.00
4204 5050 4.572389 AGGTATTTATCGACAAGCTTGCTG 59.428 41.667 26.27 18.15 0.00 4.41
4226 5097 2.678769 GCCCATGGCCAAAAGATGAAAG 60.679 50.000 10.96 0.00 44.06 2.62
4228 5099 0.903942 GCCCATGGCCAAAAGATGAA 59.096 50.000 10.96 0.00 44.06 2.57
4245 5116 2.408050 GATATGTCGATGACCAGTGCC 58.592 52.381 0.00 0.00 0.00 5.01
4248 5119 2.630098 CAGGGATATGTCGATGACCAGT 59.370 50.000 0.00 0.00 0.00 4.00
4249 5120 2.611473 GCAGGGATATGTCGATGACCAG 60.611 54.545 0.00 0.00 0.00 4.00
4251 5122 1.344438 TGCAGGGATATGTCGATGACC 59.656 52.381 0.00 0.00 0.00 4.02
4253 5124 1.620323 CCTGCAGGGATATGTCGATGA 59.380 52.381 26.14 0.00 37.23 2.92
4255 5126 0.322975 GCCTGCAGGGATATGTCGAT 59.677 55.000 33.46 0.00 37.23 3.59
4256 5127 1.048160 TGCCTGCAGGGATATGTCGA 61.048 55.000 33.46 3.93 37.23 4.20
4257 5128 0.602106 CTGCCTGCAGGGATATGTCG 60.602 60.000 33.46 14.54 40.17 4.35
4258 5129 0.888285 GCTGCCTGCAGGGATATGTC 60.888 60.000 33.46 15.59 43.77 3.06
4259 5130 1.150081 GCTGCCTGCAGGGATATGT 59.850 57.895 33.46 0.00 43.77 2.29
4260 5131 1.602888 GGCTGCCTGCAGGGATATG 60.603 63.158 33.46 20.22 45.15 1.78
4291 5162 2.435410 TGCTGCTGATCGCTGTGG 60.435 61.111 0.00 4.38 39.51 4.17
4328 5210 4.154347 GCCTGGGTGGAGCTCTCG 62.154 72.222 14.64 0.00 38.35 4.04
4337 5219 2.420129 GGAGTACAATACTGCCTGGGTG 60.420 54.545 0.00 0.00 40.75 4.61
4396 5285 9.331282 GATTGGTGATTGCTAAAGAAGTATAGT 57.669 33.333 0.00 0.00 0.00 2.12
4397 5286 9.330063 TGATTGGTGATTGCTAAAGAAGTATAG 57.670 33.333 0.00 0.00 0.00 1.31
4399 5288 7.831193 ACTGATTGGTGATTGCTAAAGAAGTAT 59.169 33.333 0.00 0.00 0.00 2.12
4401 5290 6.006449 ACTGATTGGTGATTGCTAAAGAAGT 58.994 36.000 0.00 0.00 0.00 3.01
4402 5291 6.072286 ACACTGATTGGTGATTGCTAAAGAAG 60.072 38.462 1.52 0.00 40.13 2.85
4411 5316 3.316029 ACACACACACTGATTGGTGATTG 59.684 43.478 0.00 0.00 40.13 2.67
4418 5323 2.219445 CGAGACACACACACACTGATTG 59.781 50.000 0.00 0.00 0.00 2.67
4433 5338 3.603158 TGCTTAAACTATGCCGAGACA 57.397 42.857 0.00 0.00 0.00 3.41
4434 5339 4.181578 TCTTGCTTAAACTATGCCGAGAC 58.818 43.478 0.00 0.00 0.00 3.36
4437 5342 4.757657 TGTTTCTTGCTTAAACTATGCCGA 59.242 37.500 9.46 0.00 37.64 5.54
4438 5343 5.041951 TGTTTCTTGCTTAAACTATGCCG 57.958 39.130 9.46 0.00 37.64 5.69
4439 5344 6.389906 ACATGTTTCTTGCTTAAACTATGCC 58.610 36.000 0.00 0.00 37.64 4.40
4440 5345 7.873739 AACATGTTTCTTGCTTAAACTATGC 57.126 32.000 4.92 0.00 37.64 3.14
4474 5379 3.262660 TCAATCAGGAGCATGAGAACTGT 59.737 43.478 0.00 0.00 31.44 3.55
4480 5385 1.476471 GGGGTCAATCAGGAGCATGAG 60.476 57.143 0.00 0.00 37.03 2.90
4483 5388 1.925888 GGGGGTCAATCAGGAGCAT 59.074 57.895 0.00 0.00 37.03 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.