Multiple sequence alignment - TraesCS4B01G055600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G055600 chr4B 100.000 5897 0 0 366 6262 44189556 44183660 0.000000e+00 10890.0
1 TraesCS4B01G055600 chr4B 100.000 48 0 0 1 48 44189921 44189874 8.650000e-14 89.8
2 TraesCS4B01G055600 chr4D 93.263 3711 177 36 382 4058 30961259 30957588 0.000000e+00 5400.0
3 TraesCS4B01G055600 chr4D 93.747 1855 85 15 4210 6048 30957370 30955531 0.000000e+00 2754.0
4 TraesCS4B01G055600 chr4D 94.152 171 9 1 6073 6242 93338038 93338208 6.230000e-65 259.0
5 TraesCS4B01G055600 chr4D 91.667 48 4 0 2739 2786 301756537 301756490 4.050000e-07 67.6
6 TraesCS4B01G055600 chr4A 93.240 2944 117 43 405 3311 571776701 571779599 0.000000e+00 4259.0
7 TraesCS4B01G055600 chr4A 91.405 2071 111 34 4048 6070 571780733 571782784 0.000000e+00 2776.0
8 TraesCS4B01G055600 chr4A 89.350 723 44 12 3363 4059 571779993 571780708 0.000000e+00 878.0
9 TraesCS4B01G055600 chr4A 87.500 64 8 0 2723 2786 179057214 179057277 2.420000e-09 75.0
10 TraesCS4B01G055600 chr5D 95.238 168 7 1 6074 6240 25039977 25040144 1.340000e-66 265.0
11 TraesCS4B01G055600 chr5A 94.706 170 7 2 6077 6244 651496986 651496817 4.810000e-66 263.0
12 TraesCS4B01G055600 chr5A 89.855 69 6 1 2717 2784 363848059 363848127 3.110000e-13 87.9
13 TraesCS4B01G055600 chr3A 94.152 171 8 2 6071 6240 744921116 744920947 6.230000e-65 259.0
14 TraesCS4B01G055600 chr3A 91.848 184 10 4 6061 6241 101895123 101895304 1.040000e-62 252.0
15 TraesCS4B01G055600 chr2D 94.643 168 8 1 6076 6242 24312358 24312191 6.230000e-65 259.0
16 TraesCS4B01G055600 chr2A 94.118 170 9 1 6072 6240 746756985 746757154 2.240000e-64 257.0
17 TraesCS4B01G055600 chr6D 91.848 184 11 4 6060 6240 206560256 206560438 2.900000e-63 254.0
18 TraesCS4B01G055600 chr2B 91.304 184 13 3 6077 6258 719520669 719520487 1.350000e-61 248.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G055600 chr4B 44183660 44189921 6261 True 5489.900000 10890 100.000000 1 6262 2 chr4B.!!$R1 6261
1 TraesCS4B01G055600 chr4D 30955531 30961259 5728 True 4077.000000 5400 93.505000 382 6048 2 chr4D.!!$R2 5666
2 TraesCS4B01G055600 chr4A 571776701 571782784 6083 False 2637.666667 4259 91.331667 405 6070 3 chr4A.!!$F2 5665

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
659 682 0.316689 GAGCGTGTGGTTTTCGGTTG 60.317 55.000 0.00 0.00 35.52 3.77 F
939 963 0.460987 GCACACTGTAGCCTAGCAGG 60.461 60.000 6.37 0.00 38.80 4.85 F
1758 1787 1.079750 GGACACCTTCCGTCAGCTC 60.080 63.158 0.00 0.00 33.46 4.09 F
2220 2258 0.597377 CAAGTTTGGCAAAGGTCGGC 60.597 55.000 13.94 0.03 0.00 5.54 F
2382 2420 1.735700 CGTGTCGCTAGGAAAGATGCA 60.736 52.381 0.00 0.00 0.00 3.96 F
3915 4303 0.615261 TGTACCATGCTACCCCGTCA 60.615 55.000 0.00 0.00 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1809 1838 0.179004 TTCCACCGGCAACACTTGAT 60.179 50.000 0.00 0.0 0.00 2.57 R
2058 2096 0.229247 CAATGCAAAACACAACGGCG 59.771 50.000 4.80 4.8 0.00 6.46 R
2891 2933 0.320596 ACATTGCCCATTTTGCACCG 60.321 50.000 0.00 0.0 38.72 4.94 R
3685 4070 0.983467 TGCACATCCCTGTAGCAGAA 59.017 50.000 0.00 0.0 35.74 3.02 R
4255 4730 1.278985 TCTACACAAGTGGCATCCAGG 59.721 52.381 5.08 0.0 32.34 4.45 R
5742 6240 0.538287 AGGTCTTTGAACTGGGCTGC 60.538 55.000 0.00 0.0 0.00 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.027419 GCTTGCTTGACTGGGAACT 57.973 52.632 0.00 0.00 0.00 3.01
19 20 0.595095 GCTTGCTTGACTGGGAACTG 59.405 55.000 0.00 0.00 0.00 3.16
20 21 1.815408 GCTTGCTTGACTGGGAACTGA 60.815 52.381 0.00 0.00 0.00 3.41
21 22 2.575532 CTTGCTTGACTGGGAACTGAA 58.424 47.619 0.00 0.00 0.00 3.02
22 23 2.727123 TGCTTGACTGGGAACTGAAA 57.273 45.000 0.00 0.00 0.00 2.69
23 24 2.297701 TGCTTGACTGGGAACTGAAAC 58.702 47.619 0.00 0.00 0.00 2.78
24 25 2.092429 TGCTTGACTGGGAACTGAAACT 60.092 45.455 0.00 0.00 0.00 2.66
25 26 2.291741 GCTTGACTGGGAACTGAAACTG 59.708 50.000 0.00 0.00 0.00 3.16
26 27 3.808728 CTTGACTGGGAACTGAAACTGA 58.191 45.455 0.00 0.00 0.00 3.41
27 28 3.924114 TGACTGGGAACTGAAACTGAA 57.076 42.857 0.00 0.00 0.00 3.02
28 29 4.229304 TGACTGGGAACTGAAACTGAAA 57.771 40.909 0.00 0.00 0.00 2.69
29 30 3.945285 TGACTGGGAACTGAAACTGAAAC 59.055 43.478 0.00 0.00 0.00 2.78
30 31 3.288092 ACTGGGAACTGAAACTGAAACC 58.712 45.455 0.00 0.00 0.00 3.27
31 32 2.290641 CTGGGAACTGAAACTGAAACCG 59.709 50.000 0.00 0.00 0.00 4.44
32 33 2.092861 TGGGAACTGAAACTGAAACCGA 60.093 45.455 0.00 0.00 0.00 4.69
33 34 2.946990 GGGAACTGAAACTGAAACCGAA 59.053 45.455 0.00 0.00 0.00 4.30
34 35 3.379057 GGGAACTGAAACTGAAACCGAAA 59.621 43.478 0.00 0.00 0.00 3.46
35 36 4.348656 GGAACTGAAACTGAAACCGAAAC 58.651 43.478 0.00 0.00 0.00 2.78
36 37 4.348656 GAACTGAAACTGAAACCGAAACC 58.651 43.478 0.00 0.00 0.00 3.27
37 38 2.353579 ACTGAAACTGAAACCGAAACCG 59.646 45.455 0.00 0.00 0.00 4.44
38 39 1.064357 TGAAACTGAAACCGAAACCGC 59.936 47.619 0.00 0.00 0.00 5.68
39 40 0.382873 AAACTGAAACCGAAACCGCC 59.617 50.000 0.00 0.00 0.00 6.13
40 41 0.748729 AACTGAAACCGAAACCGCCA 60.749 50.000 0.00 0.00 0.00 5.69
41 42 1.281656 CTGAAACCGAAACCGCCAC 59.718 57.895 0.00 0.00 0.00 5.01
42 43 2.125202 CTGAAACCGAAACCGCCACC 62.125 60.000 0.00 0.00 0.00 4.61
43 44 2.124236 AAACCGAAACCGCCACCA 60.124 55.556 0.00 0.00 0.00 4.17
44 45 2.125202 GAAACCGAAACCGCCACCAG 62.125 60.000 0.00 0.00 0.00 4.00
45 46 2.897172 AAACCGAAACCGCCACCAGT 62.897 55.000 0.00 0.00 0.00 4.00
46 47 3.047877 CCGAAACCGCCACCAGTC 61.048 66.667 0.00 0.00 0.00 3.51
47 48 3.411351 CGAAACCGCCACCAGTCG 61.411 66.667 0.00 0.00 0.00 4.18
532 541 3.554342 CTCTCCCATCTGCCCCGG 61.554 72.222 0.00 0.00 0.00 5.73
548 561 2.851588 GGCCCCATCTCTCCCCTC 60.852 72.222 0.00 0.00 0.00 4.30
549 562 2.851588 GCCCCATCTCTCCCCTCC 60.852 72.222 0.00 0.00 0.00 4.30
657 680 1.890510 GGAGCGTGTGGTTTTCGGT 60.891 57.895 0.00 0.00 37.98 4.69
659 682 0.316689 GAGCGTGTGGTTTTCGGTTG 60.317 55.000 0.00 0.00 35.52 3.77
710 733 4.394712 GCGTGGGGAGGTGAGGTG 62.395 72.222 0.00 0.00 0.00 4.00
711 734 3.706373 CGTGGGGAGGTGAGGTGG 61.706 72.222 0.00 0.00 0.00 4.61
712 735 2.203938 GTGGGGAGGTGAGGTGGA 60.204 66.667 0.00 0.00 0.00 4.02
770 793 2.723273 CAGTTGGGGGAGTGTAATTCC 58.277 52.381 0.00 0.00 42.98 3.01
814 837 1.002502 GGCAGTGGTTCCTGTACCC 60.003 63.158 0.00 0.00 37.39 3.69
933 957 2.973899 CGGAGCACACTGTAGCCT 59.026 61.111 1.37 0.00 0.00 4.58
939 963 0.460987 GCACACTGTAGCCTAGCAGG 60.461 60.000 6.37 0.00 38.80 4.85
1004 1033 2.125106 GGAGCGGGTGGTGATGAC 60.125 66.667 0.00 0.00 0.00 3.06
1443 1472 3.148279 GTCACGGGGGAGATCGCT 61.148 66.667 0.00 0.00 0.00 4.93
1497 1526 3.423154 CTCAACCTCGCCGGCAAC 61.423 66.667 28.98 0.00 35.61 4.17
1641 1670 1.698165 GCGTTCTCGATGTGTCTCAA 58.302 50.000 0.00 0.00 39.71 3.02
1644 1673 2.408704 CGTTCTCGATGTGTCTCAAACC 59.591 50.000 0.00 0.00 39.71 3.27
1758 1787 1.079750 GGACACCTTCCGTCAGCTC 60.080 63.158 0.00 0.00 33.46 4.09
1806 1835 4.026052 CTGGGAATTACTTTGAGGGCAAT 58.974 43.478 0.00 0.00 33.25 3.56
1809 1838 5.044476 TGGGAATTACTTTGAGGGCAATCTA 60.044 40.000 0.00 0.00 33.25 1.98
1878 1910 4.752879 GTTGCCGGGCAGCGTAGA 62.753 66.667 22.59 2.84 40.61 2.59
1902 1934 3.010420 GGAGGATTGCCAACAGTTCTAC 58.990 50.000 0.00 0.00 36.29 2.59
1977 2015 1.870055 CGCCTGTGCCTGCAGAAAAT 61.870 55.000 17.39 0.00 38.70 1.82
1983 2021 4.380233 CCTGTGCCTGCAGAAAATAAGAAG 60.380 45.833 17.39 0.00 38.70 2.85
1992 2030 4.142293 GCAGAAAATAAGAAGGGAAGGCAG 60.142 45.833 0.00 0.00 0.00 4.85
2058 2096 2.399356 GCTTCTAGCCGTGGTTGCC 61.399 63.158 0.00 0.00 34.48 4.52
2069 2107 3.894947 GGTTGCCGCCGTTGTGTT 61.895 61.111 0.00 0.00 0.00 3.32
2103 2141 1.851653 TCTAGGAGGGGTAGGAGTGAC 59.148 57.143 0.00 0.00 0.00 3.67
2152 2190 1.077930 CCAGGAGTGCATGGGAGTG 60.078 63.158 0.00 0.00 42.16 3.51
2220 2258 0.597377 CAAGTTTGGCAAAGGTCGGC 60.597 55.000 13.94 0.03 0.00 5.54
2360 2398 3.192844 GTGGTCGTGAAGAGGATCACTAA 59.807 47.826 5.96 0.00 45.98 2.24
2382 2420 1.735700 CGTGTCGCTAGGAAAGATGCA 60.736 52.381 0.00 0.00 0.00 3.96
2435 2473 3.368822 GCATGAAAGGCTGGTGCA 58.631 55.556 0.00 0.00 42.67 4.57
2442 2480 2.557924 TGAAAGGCTGGTGCACTTAATG 59.442 45.455 17.98 3.96 41.91 1.90
2690 2729 9.730420 GTATTGTTCGTAGATGCCAAATTTATT 57.270 29.630 0.00 0.00 35.04 1.40
2737 2776 4.814967 ACCCCCATTCCAAATTAATCGAT 58.185 39.130 0.00 0.00 0.00 3.59
2753 2792 4.744795 ATCGATGTTCTAGCTTTGTCCT 57.255 40.909 0.00 0.00 0.00 3.85
2855 2894 6.635030 AGAGTTGGTCAAATTTAGGACAAC 57.365 37.500 14.36 14.36 35.74 3.32
2862 2901 7.708998 TGGTCAAATTTAGGACAACACTAAAC 58.291 34.615 9.98 0.00 41.59 2.01
2961 3003 4.017683 AGGATCTTGGGCTCTTTTCTCAAT 60.018 41.667 0.00 0.00 0.00 2.57
2963 3005 2.821969 TCTTGGGCTCTTTTCTCAATGC 59.178 45.455 0.00 0.00 0.00 3.56
3004 3046 2.755469 CTGGCCCAACATTCCCCG 60.755 66.667 0.00 0.00 0.00 5.73
3213 3255 2.572556 TCCTGTACCTTGCCCGAATAAA 59.427 45.455 0.00 0.00 0.00 1.40
3307 3350 5.523916 GTCGTGTAGTGGCATCTCATTATTT 59.476 40.000 0.00 0.00 0.00 1.40
3308 3351 6.700081 GTCGTGTAGTGGCATCTCATTATTTA 59.300 38.462 0.00 0.00 0.00 1.40
3309 3352 6.923508 TCGTGTAGTGGCATCTCATTATTTAG 59.076 38.462 0.00 0.00 0.00 1.85
3310 3353 6.346919 CGTGTAGTGGCATCTCATTATTTAGC 60.347 42.308 0.00 0.00 0.00 3.09
3312 3355 7.173907 GTGTAGTGGCATCTCATTATTTAGCAT 59.826 37.037 0.00 0.00 0.00 3.79
3313 3356 8.374743 TGTAGTGGCATCTCATTATTTAGCATA 58.625 33.333 0.00 0.00 0.00 3.14
3316 3359 9.305555 AGTGGCATCTCATTATTTAGCATAATT 57.694 29.630 0.00 0.00 0.00 1.40
3334 3386 6.253512 GCATAATTTTAGCAGTTTTCCTTCCG 59.746 38.462 0.00 0.00 0.00 4.30
3402 3786 6.385176 TGATCTCCTGACCAACTATCAATCTT 59.615 38.462 0.00 0.00 0.00 2.40
3412 3796 4.124851 ACTATCAATCTTCACACGACCC 57.875 45.455 0.00 0.00 0.00 4.46
3497 3881 2.355197 TCATATGTTGCCGTCAGTTGG 58.645 47.619 1.90 0.00 0.00 3.77
3539 3924 9.921637 TTGTATTAAACTGTTGAAAATCATCCC 57.078 29.630 0.00 0.00 0.00 3.85
3562 3947 7.285172 TCCCACCACAATATCATCATACAAAAG 59.715 37.037 0.00 0.00 0.00 2.27
3574 3959 8.537728 TCATCATACAAAAGGATAGGCAATTT 57.462 30.769 0.00 0.00 0.00 1.82
3586 3971 8.773033 AGGATAGGCAATTTTATGATGTTCTT 57.227 30.769 0.00 0.00 0.00 2.52
3638 4023 5.012239 AGTATCAACCTGTCACATGCAATT 58.988 37.500 0.00 0.00 0.00 2.32
3651 4036 6.704937 GTCACATGCAATTAGATCATGAGAGA 59.295 38.462 0.09 1.68 38.07 3.10
3652 4037 7.226128 GTCACATGCAATTAGATCATGAGAGAA 59.774 37.037 0.09 0.00 38.07 2.87
3768 4153 4.370364 TGGAAGTTTGAGTGAAGTTTGC 57.630 40.909 0.00 0.00 0.00 3.68
3819 4204 6.312918 ACGTCATCACAAAGCTATTACGATTT 59.687 34.615 7.05 0.00 0.00 2.17
3848 4233 6.365247 TCGTAAGTTTCTGTTTCTATCACTGC 59.635 38.462 0.00 0.00 39.48 4.40
3864 4250 4.976864 TCACTGCATGATTGGCTATGTAT 58.023 39.130 0.00 0.00 29.99 2.29
3878 4264 7.734924 TGGCTATGTATCTTATTTGCTCAAG 57.265 36.000 0.00 0.00 0.00 3.02
3881 4267 5.679734 ATGTATCTTATTTGCTCAAGCGG 57.320 39.130 0.00 0.00 45.83 5.52
3904 4292 5.115480 GGTAATTGCCCATTTTGTACCATG 58.885 41.667 0.16 0.00 0.00 3.66
3910 4298 2.693074 CCCATTTTGTACCATGCTACCC 59.307 50.000 0.00 0.00 0.00 3.69
3915 4303 0.615261 TGTACCATGCTACCCCGTCA 60.615 55.000 0.00 0.00 0.00 4.35
3932 4321 4.758165 CCCGTCAGTTACAAACCTGTAAAT 59.242 41.667 0.00 0.00 46.91 1.40
3940 4329 6.722129 AGTTACAAACCTGTAAATTGCCCATA 59.278 34.615 0.00 0.00 46.91 2.74
3956 4345 4.141274 TGCCCATATTGCACCATACTACTT 60.141 41.667 0.00 0.00 32.85 2.24
3957 4346 4.827284 GCCCATATTGCACCATACTACTTT 59.173 41.667 0.00 0.00 0.00 2.66
4014 4422 7.790823 ATGCTTTTTAAAATTCAGTGCAAGT 57.209 28.000 0.55 0.00 0.00 3.16
4107 4552 8.830201 AGACTCAAAATCTCTATATCATGTGC 57.170 34.615 0.00 0.00 0.00 4.57
4113 4558 9.486497 CAAAATCTCTATATCATGTGCTACTGT 57.514 33.333 0.00 0.00 0.00 3.55
4127 4572 7.124573 TGTGCTACTGTATTTATCACCTGAT 57.875 36.000 0.00 0.00 38.51 2.90
4139 4584 3.708403 TCACCTGATTTGATCACAGCT 57.292 42.857 0.00 0.00 35.06 4.24
4187 4632 7.604164 AGGAAATATTAGATCATGTAACTGGCG 59.396 37.037 0.00 0.00 0.00 5.69
4204 4649 2.156098 GGCGACTTAACATGGGTCAAA 58.844 47.619 0.00 0.00 0.00 2.69
4206 4651 3.192633 GGCGACTTAACATGGGTCAAATT 59.807 43.478 0.00 0.00 0.00 1.82
4208 4653 5.067283 GGCGACTTAACATGGGTCAAATTAT 59.933 40.000 0.00 0.00 0.00 1.28
4228 4703 9.577110 AAATTATATGTGTTCAACTTGAGCATG 57.423 29.630 11.04 0.00 39.69 4.06
4229 4704 7.686438 TTATATGTGTTCAACTTGAGCATGT 57.314 32.000 11.04 8.70 39.69 3.21
4230 4705 8.785329 TTATATGTGTTCAACTTGAGCATGTA 57.215 30.769 11.04 8.01 39.69 2.29
4231 4706 5.618056 ATGTGTTCAACTTGAGCATGTAG 57.382 39.130 11.04 0.00 39.69 2.74
4232 4707 4.450976 TGTGTTCAACTTGAGCATGTAGT 58.549 39.130 11.04 0.00 39.69 2.73
4233 4708 4.881273 TGTGTTCAACTTGAGCATGTAGTT 59.119 37.500 11.04 0.00 39.69 2.24
4234 4709 5.356751 TGTGTTCAACTTGAGCATGTAGTTT 59.643 36.000 11.04 0.00 39.69 2.66
4235 4710 6.540551 TGTGTTCAACTTGAGCATGTAGTTTA 59.459 34.615 11.04 0.00 39.69 2.01
4236 4711 6.851330 GTGTTCAACTTGAGCATGTAGTTTAC 59.149 38.462 11.04 2.18 39.69 2.01
4269 4744 2.165030 GTCAATTCCTGGATGCCACTTG 59.835 50.000 0.00 0.00 0.00 3.16
4276 4751 2.290260 CCTGGATGCCACTTGTGTAGAA 60.290 50.000 0.00 0.00 0.00 2.10
4277 4752 3.411446 CTGGATGCCACTTGTGTAGAAA 58.589 45.455 0.00 0.00 0.00 2.52
4279 4754 3.758023 TGGATGCCACTTGTGTAGAAATG 59.242 43.478 0.00 0.00 0.00 2.32
4280 4755 3.428045 GGATGCCACTTGTGTAGAAATGC 60.428 47.826 0.00 0.00 0.00 3.56
4283 4758 3.004629 TGCCACTTGTGTAGAAATGCTTG 59.995 43.478 0.00 0.00 0.00 4.01
4286 4761 4.455533 CCACTTGTGTAGAAATGCTTGCTA 59.544 41.667 0.00 0.00 0.00 3.49
4287 4762 5.124457 CCACTTGTGTAGAAATGCTTGCTAT 59.876 40.000 0.00 0.00 0.00 2.97
4312 4795 0.322648 TGCCACTCACTGAGGATGTG 59.677 55.000 10.86 0.61 33.35 3.21
4314 4797 1.674221 GCCACTCACTGAGGATGTGTC 60.674 57.143 10.86 0.00 36.83 3.67
4322 4805 4.081807 TCACTGAGGATGTGTCAGATCAAG 60.082 45.833 11.74 8.21 43.65 3.02
4327 4810 5.129980 TGAGGATGTGTCAGATCAAGCTATT 59.870 40.000 11.74 0.00 0.00 1.73
4344 4827 9.267084 TCAAGCTATTTGAAACAAAAATTACCC 57.733 29.630 0.00 0.00 42.69 3.69
4353 4836 8.804688 TGAAACAAAAATTACCCGAATTAGTG 57.195 30.769 0.00 0.00 36.71 2.74
4362 4845 2.752903 ACCCGAATTAGTGGATGCAAAC 59.247 45.455 0.00 0.00 0.00 2.93
4367 4850 5.516339 CCGAATTAGTGGATGCAAACAATTC 59.484 40.000 14.36 14.36 0.00 2.17
4369 4852 6.252015 CGAATTAGTGGATGCAAACAATTCTG 59.748 38.462 18.60 12.49 31.75 3.02
4370 4853 6.594788 ATTAGTGGATGCAAACAATTCTGT 57.405 33.333 0.00 0.00 37.39 3.41
4371 4854 4.510038 AGTGGATGCAAACAATTCTGTC 57.490 40.909 0.00 0.00 33.45 3.51
4372 4855 4.147321 AGTGGATGCAAACAATTCTGTCT 58.853 39.130 0.00 0.00 33.45 3.41
4374 4857 4.682860 GTGGATGCAAACAATTCTGTCTTG 59.317 41.667 0.00 0.00 33.45 3.02
4375 4858 4.240096 GGATGCAAACAATTCTGTCTTGG 58.760 43.478 0.00 0.00 33.45 3.61
4376 4859 4.022068 GGATGCAAACAATTCTGTCTTGGA 60.022 41.667 0.00 0.00 33.45 3.53
4382 4866 6.703165 GCAAACAATTCTGTCTTGGATTCTTT 59.297 34.615 0.00 0.00 33.45 2.52
4384 4868 8.758715 CAAACAATTCTGTCTTGGATTCTTTTC 58.241 33.333 0.00 0.00 33.45 2.29
4397 4881 3.799281 TTCTTTTCTGTTGCTTGTGGG 57.201 42.857 0.00 0.00 0.00 4.61
4415 4899 6.959639 TGTGGGATCCTAATATTTTTCAGC 57.040 37.500 12.58 0.00 0.00 4.26
4416 4900 6.430864 TGTGGGATCCTAATATTTTTCAGCA 58.569 36.000 12.58 0.00 0.00 4.41
4421 4905 7.285401 GGGATCCTAATATTTTTCAGCAGTCAA 59.715 37.037 12.58 0.00 0.00 3.18
4587 5071 9.702726 CATTGATTTGAATCATTTCATTTCAGC 57.297 29.630 7.20 0.00 44.27 4.26
4589 5073 7.617225 TGATTTGAATCATTTCATTTCAGCCT 58.383 30.769 2.39 0.00 41.38 4.58
4590 5074 8.098286 TGATTTGAATCATTTCATTTCAGCCTT 58.902 29.630 2.39 0.00 41.38 4.35
4591 5075 7.661127 TTTGAATCATTTCATTTCAGCCTTG 57.339 32.000 0.00 0.00 41.38 3.61
4592 5076 5.726397 TGAATCATTTCATTTCAGCCTTGG 58.274 37.500 0.00 0.00 36.94 3.61
4593 5077 5.481122 TGAATCATTTCATTTCAGCCTTGGA 59.519 36.000 0.00 0.00 36.94 3.53
4715 5199 4.084171 CCATCTGCATCATGTTCATACGAC 60.084 45.833 0.00 0.00 0.00 4.34
4928 5412 1.530293 GCAATGGCAATTGTCGCAAAA 59.470 42.857 15.28 0.00 44.34 2.44
5036 5520 1.107538 ATAACGGCTCTAGCTCGGCA 61.108 55.000 14.39 5.12 41.70 5.69
5243 5727 2.190578 CCCGAGCCATCTGGTTCC 59.809 66.667 7.40 0.00 41.71 3.62
5260 5744 0.608130 TCCCGTGACACAGAGGATTG 59.392 55.000 6.37 0.00 0.00 2.67
5501 5985 0.038251 GTGCACTGTCTGGACGATGA 60.038 55.000 10.32 0.00 30.67 2.92
5527 6011 3.008049 GGAGTGGCTCTGGTTTCTCTTTA 59.992 47.826 0.00 0.00 0.00 1.85
5534 6018 5.712446 GGCTCTGGTTTCTCTTTATTTTCCT 59.288 40.000 0.00 0.00 0.00 3.36
5592 6081 5.180304 GTCGAGCTGATTCTTTTTCTCCTTT 59.820 40.000 0.00 0.00 0.00 3.11
5649 6138 4.799255 GCAAAAATGTTCGTTCCATCCCTT 60.799 41.667 0.00 0.00 0.00 3.95
5672 6169 4.700213 TGGCTTGGTTATTTCTGTTCTAGC 59.300 41.667 0.00 0.00 0.00 3.42
5740 6238 3.430333 TTTTTGGAGAGAAAACACCGC 57.570 42.857 0.00 0.00 0.00 5.68
5742 6240 0.882927 TTGGAGAGAAAACACCGCGG 60.883 55.000 26.86 26.86 0.00 6.46
5829 6327 1.066303 TGCAAATGTCCGTTTGTGGTC 59.934 47.619 12.23 0.00 40.38 4.02
5860 6358 2.713967 CCAAAAGATGCCAGCGGGG 61.714 63.158 4.64 0.00 40.85 5.73
6041 6549 2.207229 ATCCATACTGCGCGGGCTA 61.207 57.895 25.62 10.92 40.82 3.93
6055 6563 1.691195 GGGCTAGGGCTCCTCTTCAC 61.691 65.000 0.00 0.00 38.73 3.18
6057 6565 1.038130 GCTAGGGCTCCTCTTCACGA 61.038 60.000 0.00 0.00 34.61 4.35
6058 6566 1.028905 CTAGGGCTCCTCTTCACGAG 58.971 60.000 0.00 0.00 39.57 4.18
6070 6578 0.601057 TTCACGAGGTCAGCGATGAA 59.399 50.000 4.22 0.00 31.53 2.57
6071 6579 0.171231 TCACGAGGTCAGCGATGAAG 59.829 55.000 4.22 0.00 0.00 3.02
6072 6580 0.109086 CACGAGGTCAGCGATGAAGT 60.109 55.000 4.22 0.31 0.00 3.01
6073 6581 1.132453 CACGAGGTCAGCGATGAAGTA 59.868 52.381 4.22 0.00 0.00 2.24
6074 6582 2.025155 ACGAGGTCAGCGATGAAGTAT 58.975 47.619 4.22 0.00 0.00 2.12
6075 6583 2.223595 ACGAGGTCAGCGATGAAGTATG 60.224 50.000 4.22 0.00 0.00 2.39
6076 6584 2.223595 CGAGGTCAGCGATGAAGTATGT 60.224 50.000 4.22 0.00 0.00 2.29
6077 6585 3.003378 CGAGGTCAGCGATGAAGTATGTA 59.997 47.826 4.22 0.00 0.00 2.29
6078 6586 4.291783 GAGGTCAGCGATGAAGTATGTAC 58.708 47.826 4.22 0.00 0.00 2.90
6079 6587 3.954904 AGGTCAGCGATGAAGTATGTACT 59.045 43.478 4.22 0.00 38.39 2.73
6080 6588 4.036971 AGGTCAGCGATGAAGTATGTACTC 59.963 45.833 4.22 0.00 34.99 2.59
6081 6589 4.291783 GTCAGCGATGAAGTATGTACTCC 58.708 47.826 4.22 0.00 34.99 3.85
6082 6590 3.318275 TCAGCGATGAAGTATGTACTCCC 59.682 47.826 0.00 0.00 34.99 4.30
6083 6591 3.319405 CAGCGATGAAGTATGTACTCCCT 59.681 47.826 0.00 0.00 34.99 4.20
6084 6592 3.570550 AGCGATGAAGTATGTACTCCCTC 59.429 47.826 0.00 0.00 34.99 4.30
6085 6593 3.305471 GCGATGAAGTATGTACTCCCTCC 60.305 52.174 0.00 0.00 34.99 4.30
6086 6594 3.058155 CGATGAAGTATGTACTCCCTCCG 60.058 52.174 0.00 0.00 34.99 4.63
6087 6595 3.377253 TGAAGTATGTACTCCCTCCGT 57.623 47.619 0.00 0.00 34.99 4.69
6088 6596 3.705051 TGAAGTATGTACTCCCTCCGTT 58.295 45.455 0.00 0.00 34.99 4.44
6089 6597 3.698040 TGAAGTATGTACTCCCTCCGTTC 59.302 47.826 0.00 0.00 34.99 3.95
6090 6598 2.664015 AGTATGTACTCCCTCCGTTCC 58.336 52.381 0.00 0.00 0.00 3.62
6091 6599 2.244252 AGTATGTACTCCCTCCGTTCCT 59.756 50.000 0.00 0.00 0.00 3.36
6092 6600 3.461085 AGTATGTACTCCCTCCGTTCCTA 59.539 47.826 0.00 0.00 0.00 2.94
6093 6601 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
6094 6602 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
6095 6603 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
6096 6604 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
6097 6605 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
6098 6606 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
6099 6607 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
6100 6608 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
6101 6609 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
6102 6610 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
6103 6611 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
6104 6612 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
6105 6613 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
6106 6614 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
6107 6615 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
6108 6616 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
6109 6617 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
6110 6618 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
6123 6631 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
6124 6632 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
6125 6633 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
6126 6634 8.707839 GTCTTTCTAGAGATTTCAACAAGTGAG 58.292 37.037 0.00 0.00 37.61 3.51
6127 6635 8.424918 TCTTTCTAGAGATTTCAACAAGTGAGT 58.575 33.333 0.00 0.00 37.61 3.41
6128 6636 9.698309 CTTTCTAGAGATTTCAACAAGTGAGTA 57.302 33.333 0.00 0.00 37.61 2.59
6129 6637 9.477484 TTTCTAGAGATTTCAACAAGTGAGTAC 57.523 33.333 0.00 0.00 37.61 2.73
6130 6638 8.178313 TCTAGAGATTTCAACAAGTGAGTACA 57.822 34.615 0.00 0.00 37.61 2.90
6131 6639 8.807118 TCTAGAGATTTCAACAAGTGAGTACAT 58.193 33.333 0.00 0.00 37.61 2.29
6133 6641 8.764524 AGAGATTTCAACAAGTGAGTACATAC 57.235 34.615 0.00 0.00 37.61 2.39
6134 6642 7.542477 AGAGATTTCAACAAGTGAGTACATACG 59.458 37.037 0.00 0.00 37.61 3.06
6135 6643 7.375834 AGATTTCAACAAGTGAGTACATACGA 58.624 34.615 0.00 0.00 37.61 3.43
6136 6644 7.870954 AGATTTCAACAAGTGAGTACATACGAA 59.129 33.333 0.00 0.00 37.61 3.85
6137 6645 7.402811 TTTCAACAAGTGAGTACATACGAAG 57.597 36.000 0.00 0.00 37.61 3.79
6138 6646 4.921515 TCAACAAGTGAGTACATACGAAGC 59.078 41.667 0.00 0.00 0.00 3.86
6139 6647 4.514781 ACAAGTGAGTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
6140 6648 4.878439 ACAAGTGAGTACATACGAAGCAA 58.122 39.130 0.00 0.00 0.00 3.91
6141 6649 5.294356 ACAAGTGAGTACATACGAAGCAAA 58.706 37.500 0.00 0.00 0.00 3.68
6142 6650 5.756347 ACAAGTGAGTACATACGAAGCAAAA 59.244 36.000 0.00 0.00 0.00 2.44
6143 6651 6.426937 ACAAGTGAGTACATACGAAGCAAAAT 59.573 34.615 0.00 0.00 0.00 1.82
6144 6652 6.408858 AGTGAGTACATACGAAGCAAAATG 57.591 37.500 0.00 0.00 0.00 2.32
6145 6653 6.163476 AGTGAGTACATACGAAGCAAAATGA 58.837 36.000 0.00 0.00 0.00 2.57
6146 6654 6.311445 AGTGAGTACATACGAAGCAAAATGAG 59.689 38.462 0.00 0.00 0.00 2.90
6147 6655 6.090898 GTGAGTACATACGAAGCAAAATGAGT 59.909 38.462 0.00 0.00 0.00 3.41
6148 6656 6.090763 TGAGTACATACGAAGCAAAATGAGTG 59.909 38.462 0.00 0.00 0.00 3.51
6149 6657 6.163476 AGTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
6150 6658 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
6151 6659 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
6152 6660 6.913170 ACATACGAAGCAAAATGAGTGAATT 58.087 32.000 0.00 0.00 0.00 2.17
6153 6661 7.370383 ACATACGAAGCAAAATGAGTGAATTT 58.630 30.769 0.00 0.00 0.00 1.82
6154 6662 8.511321 ACATACGAAGCAAAATGAGTGAATTTA 58.489 29.630 0.00 0.00 0.00 1.40
6155 6663 8.788813 CATACGAAGCAAAATGAGTGAATTTAC 58.211 33.333 0.00 0.00 0.00 2.01
6156 6664 6.734137 ACGAAGCAAAATGAGTGAATTTACA 58.266 32.000 2.93 0.00 0.00 2.41
6157 6665 6.636850 ACGAAGCAAAATGAGTGAATTTACAC 59.363 34.615 2.93 0.00 40.60 2.90
6234 6742 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
6235 6743 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
6236 6744 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
6237 6745 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
6238 6746 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
6239 6747 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
6240 6748 6.416631 AATATTTAGGAACGGAGGGAGTAC 57.583 41.667 0.00 0.00 0.00 2.73
6241 6749 2.905415 TTAGGAACGGAGGGAGTACA 57.095 50.000 0.00 0.00 0.00 2.90
6242 6750 2.134789 TAGGAACGGAGGGAGTACAC 57.865 55.000 0.00 0.00 0.00 2.90
6243 6751 0.408700 AGGAACGGAGGGAGTACACT 59.591 55.000 0.00 0.00 0.00 3.55
6244 6752 0.531200 GGAACGGAGGGAGTACACTG 59.469 60.000 0.00 0.00 0.00 3.66
6245 6753 1.254954 GAACGGAGGGAGTACACTGT 58.745 55.000 0.00 0.00 0.00 3.55
6246 6754 2.440409 GAACGGAGGGAGTACACTGTA 58.560 52.381 0.00 0.00 0.00 2.74
6247 6755 2.592102 ACGGAGGGAGTACACTGTAA 57.408 50.000 0.00 0.00 0.00 2.41
6248 6756 2.444421 ACGGAGGGAGTACACTGTAAG 58.556 52.381 0.00 0.00 42.29 2.34
6249 6757 2.040813 ACGGAGGGAGTACACTGTAAGA 59.959 50.000 0.00 0.00 37.43 2.10
6250 6758 3.087031 CGGAGGGAGTACACTGTAAGAA 58.913 50.000 0.00 0.00 37.43 2.52
6251 6759 3.700038 CGGAGGGAGTACACTGTAAGAAT 59.300 47.826 0.00 0.00 37.43 2.40
6252 6760 4.885907 CGGAGGGAGTACACTGTAAGAATA 59.114 45.833 0.00 0.00 37.43 1.75
6253 6761 5.221009 CGGAGGGAGTACACTGTAAGAATAC 60.221 48.000 0.00 0.00 37.43 1.89
6254 6762 5.655532 GGAGGGAGTACACTGTAAGAATACA 59.344 44.000 0.00 0.00 39.70 2.29
6255 6763 6.324254 GGAGGGAGTACACTGTAAGAATACAT 59.676 42.308 0.00 0.00 41.09 2.29
6256 6764 7.504911 GGAGGGAGTACACTGTAAGAATACATA 59.495 40.741 0.00 0.00 41.09 2.29
6257 6765 8.235359 AGGGAGTACACTGTAAGAATACATAC 57.765 38.462 0.00 0.00 41.09 2.39
6258 6766 7.287235 AGGGAGTACACTGTAAGAATACATACC 59.713 40.741 0.00 0.00 41.09 2.73
6259 6767 7.069085 GGGAGTACACTGTAAGAATACATACCA 59.931 40.741 0.00 0.00 41.09 3.25
6260 6768 8.472413 GGAGTACACTGTAAGAATACATACCAA 58.528 37.037 0.00 0.00 41.09 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.595095 CAGTTCCCAGTCAAGCAAGC 59.405 55.000 0.00 0.00 0.00 4.01
1 2 2.260844 TCAGTTCCCAGTCAAGCAAG 57.739 50.000 0.00 0.00 0.00 4.01
2 3 2.687935 GTTTCAGTTCCCAGTCAAGCAA 59.312 45.455 0.00 0.00 0.00 3.91
3 4 2.092429 AGTTTCAGTTCCCAGTCAAGCA 60.092 45.455 0.00 0.00 0.00 3.91
4 5 2.291741 CAGTTTCAGTTCCCAGTCAAGC 59.708 50.000 0.00 0.00 0.00 4.01
6 7 3.924114 TCAGTTTCAGTTCCCAGTCAA 57.076 42.857 0.00 0.00 0.00 3.18
7 8 3.924114 TTCAGTTTCAGTTCCCAGTCA 57.076 42.857 0.00 0.00 0.00 3.41
8 9 3.315470 GGTTTCAGTTTCAGTTCCCAGTC 59.685 47.826 0.00 0.00 0.00 3.51
9 10 3.288092 GGTTTCAGTTTCAGTTCCCAGT 58.712 45.455 0.00 0.00 0.00 4.00
10 11 2.290641 CGGTTTCAGTTTCAGTTCCCAG 59.709 50.000 0.00 0.00 0.00 4.45
11 12 2.092861 TCGGTTTCAGTTTCAGTTCCCA 60.093 45.455 0.00 0.00 0.00 4.37
12 13 2.567985 TCGGTTTCAGTTTCAGTTCCC 58.432 47.619 0.00 0.00 0.00 3.97
13 14 4.348656 GTTTCGGTTTCAGTTTCAGTTCC 58.651 43.478 0.00 0.00 0.00 3.62
14 15 4.348656 GGTTTCGGTTTCAGTTTCAGTTC 58.651 43.478 0.00 0.00 0.00 3.01
15 16 3.181504 CGGTTTCGGTTTCAGTTTCAGTT 60.182 43.478 0.00 0.00 0.00 3.16
16 17 2.353579 CGGTTTCGGTTTCAGTTTCAGT 59.646 45.455 0.00 0.00 0.00 3.41
17 18 2.853281 GCGGTTTCGGTTTCAGTTTCAG 60.853 50.000 0.00 0.00 36.79 3.02
18 19 1.064357 GCGGTTTCGGTTTCAGTTTCA 59.936 47.619 0.00 0.00 36.79 2.69
19 20 1.598676 GGCGGTTTCGGTTTCAGTTTC 60.599 52.381 0.00 0.00 36.79 2.78
20 21 0.382873 GGCGGTTTCGGTTTCAGTTT 59.617 50.000 0.00 0.00 36.79 2.66
21 22 0.748729 TGGCGGTTTCGGTTTCAGTT 60.749 50.000 0.00 0.00 36.79 3.16
22 23 1.153127 TGGCGGTTTCGGTTTCAGT 60.153 52.632 0.00 0.00 36.79 3.41
23 24 1.281656 GTGGCGGTTTCGGTTTCAG 59.718 57.895 0.00 0.00 36.79 3.02
24 25 2.188161 GGTGGCGGTTTCGGTTTCA 61.188 57.895 0.00 0.00 36.79 2.69
25 26 2.125202 CTGGTGGCGGTTTCGGTTTC 62.125 60.000 0.00 0.00 36.79 2.78
26 27 2.124236 TGGTGGCGGTTTCGGTTT 60.124 55.556 0.00 0.00 36.79 3.27
27 28 2.593436 CTGGTGGCGGTTTCGGTT 60.593 61.111 0.00 0.00 36.79 4.44
28 29 3.819877 GACTGGTGGCGGTTTCGGT 62.820 63.158 0.00 0.00 36.79 4.69
29 30 3.047877 GACTGGTGGCGGTTTCGG 61.048 66.667 0.00 0.00 36.79 4.30
30 31 3.411351 CGACTGGTGGCGGTTTCG 61.411 66.667 0.00 0.00 39.81 3.46
367 368 4.323477 TCCGCTGGGTTCGGGTTG 62.323 66.667 1.41 0.00 46.43 3.77
368 369 4.016706 CTCCGCTGGGTTCGGGTT 62.017 66.667 1.41 0.00 46.43 4.11
373 374 3.706373 TCTGGCTCCGCTGGGTTC 61.706 66.667 0.00 0.00 33.83 3.62
374 375 4.021925 GTCTGGCTCCGCTGGGTT 62.022 66.667 0.00 0.00 33.83 4.11
386 387 2.594303 TTGCCTTGCCACGTCTGG 60.594 61.111 0.00 0.00 41.13 3.86
387 388 2.121564 CTGTTGCCTTGCCACGTCTG 62.122 60.000 0.00 0.00 0.00 3.51
424 425 0.323360 CCTCCGGGCTCAATTGGAAA 60.323 55.000 5.42 0.00 0.00 3.13
444 453 4.092821 GGCGTTTAATGCTTTTGAATTCCC 59.907 41.667 9.13 0.00 0.00 3.97
532 541 2.851588 GGAGGGGAGAGATGGGGC 60.852 72.222 0.00 0.00 0.00 5.80
542 555 2.647949 GGAAGAGGGAGGGAGGGGA 61.648 68.421 0.00 0.00 0.00 4.81
544 557 2.040359 GGGAAGAGGGAGGGAGGG 60.040 72.222 0.00 0.00 0.00 4.30
548 561 2.764547 GACGGGGAAGAGGGAGGG 60.765 72.222 0.00 0.00 0.00 4.30
549 562 1.758906 GAGACGGGGAAGAGGGAGG 60.759 68.421 0.00 0.00 0.00 4.30
620 643 1.153628 CTTCTTCCCCCGCTGTACG 60.154 63.158 0.00 0.00 43.15 3.67
621 644 1.221021 CCTTCTTCCCCCGCTGTAC 59.779 63.158 0.00 0.00 0.00 2.90
622 645 1.993391 CCCTTCTTCCCCCGCTGTA 60.993 63.158 0.00 0.00 0.00 2.74
623 646 3.330720 CCCTTCTTCCCCCGCTGT 61.331 66.667 0.00 0.00 0.00 4.40
624 647 3.009115 TCCCTTCTTCCCCCGCTG 61.009 66.667 0.00 0.00 0.00 5.18
628 651 3.009714 ACGCTCCCTTCTTCCCCC 61.010 66.667 0.00 0.00 0.00 5.40
632 655 0.250338 AACCACACGCTCCCTTCTTC 60.250 55.000 0.00 0.00 0.00 2.87
770 793 3.282157 CTCCGCCATCAATGCCCG 61.282 66.667 0.00 0.00 0.00 6.13
798 821 1.375523 GCGGGTACAGGAACCACTG 60.376 63.158 0.00 0.00 41.67 3.66
917 941 0.179097 GCTAGGCTACAGTGTGCTCC 60.179 60.000 5.88 4.14 0.00 4.70
919 943 0.534412 CTGCTAGGCTACAGTGTGCT 59.466 55.000 5.88 1.43 0.00 4.40
920 944 0.460987 CCTGCTAGGCTACAGTGTGC 60.461 60.000 5.88 7.56 31.76 4.57
921 945 3.748863 CCTGCTAGGCTACAGTGTG 57.251 57.895 5.88 0.00 31.76 3.82
1403 1432 3.729489 AGGCGGAGAGGTCGAGGA 61.729 66.667 0.00 0.00 0.00 3.71
1458 1487 2.743928 GTGAGGTTGCTGAGGCCG 60.744 66.667 0.00 0.00 37.74 6.13
1461 1490 1.302832 GGTGGTGAGGTTGCTGAGG 60.303 63.158 0.00 0.00 0.00 3.86
1497 1526 2.359169 TAGTTGCCCGGAGAGCAGG 61.359 63.158 0.73 0.00 45.93 4.85
1554 1583 0.745845 CATTGCCGGAGAGGTTGAGG 60.746 60.000 5.05 0.00 43.70 3.86
1620 1649 1.134530 GAGACACATCGAGAACGCGG 61.135 60.000 12.47 0.00 39.58 6.46
1641 1670 2.594592 GCGCCAGTGAGGTTGGTT 60.595 61.111 0.00 0.00 40.61 3.67
1644 1673 2.281070 AGTGCGCCAGTGAGGTTG 60.281 61.111 4.18 0.00 40.61 3.77
1758 1787 2.046285 GGCCATCACCCGGTTGAAG 61.046 63.158 5.53 0.44 0.00 3.02
1806 1835 1.338674 CCACCGGCAACACTTGATAGA 60.339 52.381 0.00 0.00 0.00 1.98
1809 1838 0.179004 TTCCACCGGCAACACTTGAT 60.179 50.000 0.00 0.00 0.00 2.57
1878 1910 1.002134 CTGTTGGCAATCCTCCGGT 60.002 57.895 1.92 0.00 0.00 5.28
1964 2002 3.091545 CCCTTCTTATTTTCTGCAGGCA 58.908 45.455 15.13 0.00 0.00 4.75
1977 2015 5.520748 AATTCTTCTGCCTTCCCTTCTTA 57.479 39.130 0.00 0.00 0.00 2.10
1983 2021 3.829026 ACTTCAAATTCTTCTGCCTTCCC 59.171 43.478 0.00 0.00 0.00 3.97
2058 2096 0.229247 CAATGCAAAACACAACGGCG 59.771 50.000 4.80 4.80 0.00 6.46
2069 2107 2.483877 CTCCTAGAACGCACAATGCAAA 59.516 45.455 0.00 0.00 45.36 3.68
2134 2172 1.077930 CACTCCCATGCACTCCTGG 60.078 63.158 0.00 0.00 0.00 4.45
2163 2201 0.608640 GTGTGGTACCAGTAGCTGCT 59.391 55.000 16.93 7.57 34.84 4.24
2176 2214 2.113986 GGCAGAAGGCTGTGTGGT 59.886 61.111 0.00 0.00 44.17 4.16
2220 2258 4.036027 AGCTGGTCATAAGCAAATGAATCG 59.964 41.667 2.87 0.00 43.37 3.34
2360 2398 1.135083 CATCTTTCCTAGCGACACGGT 60.135 52.381 0.00 0.00 41.50 4.83
2435 2473 7.716799 TTATCAAAGCAATGACCCATTAAGT 57.283 32.000 0.00 0.00 32.35 2.24
2442 2480 4.949856 TCCTCTTTATCAAAGCAATGACCC 59.050 41.667 0.00 0.00 38.39 4.46
2478 2516 4.505191 CCATTACGGACAAACCTATACACG 59.495 45.833 0.00 0.00 36.56 4.49
2598 2636 4.082523 TAGCACAGTGCCTCCGCC 62.083 66.667 22.41 0.00 46.52 6.13
2737 2776 5.801531 TGACTTAGGACAAAGCTAGAACA 57.198 39.130 0.00 0.00 0.00 3.18
2753 2792 9.031537 TGGTCAGATATAGACAAGTTTGACTTA 57.968 33.333 9.30 0.00 36.03 2.24
2891 2933 0.320596 ACATTGCCCATTTTGCACCG 60.321 50.000 0.00 0.00 38.72 4.94
2943 2985 2.415090 CGCATTGAGAAAAGAGCCCAAG 60.415 50.000 0.00 0.00 0.00 3.61
2961 3003 4.640364 TCAATGCCAGTATAATCATCGCA 58.360 39.130 0.00 0.00 0.00 5.10
2963 3005 6.161911 CACTCAATGCCAGTATAATCATCG 57.838 41.667 0.00 0.00 0.00 3.84
3004 3046 2.613691 CCACAATGAAATGCAGAAGGC 58.386 47.619 0.00 0.00 45.13 4.35
3138 3180 6.017605 CAGCAATATCCAGTCCATTAAGTGTC 60.018 42.308 0.00 0.00 0.00 3.67
3191 3233 1.213296 ATTCGGGCAAGGTACAGGAT 58.787 50.000 0.00 0.00 0.00 3.24
3264 3307 4.876107 ACGACAGCGAAAATTATCTCCAAT 59.124 37.500 0.00 0.00 41.64 3.16
3270 3313 5.481472 CACTACACGACAGCGAAAATTATC 58.519 41.667 0.00 0.00 41.64 1.75
3307 3350 8.466798 GGAAGGAAAACTGCTAAAATTATGCTA 58.533 33.333 0.00 0.00 0.00 3.49
3308 3351 7.323420 GGAAGGAAAACTGCTAAAATTATGCT 58.677 34.615 0.00 0.00 0.00 3.79
3309 3352 6.253512 CGGAAGGAAAACTGCTAAAATTATGC 59.746 38.462 0.00 0.00 0.00 3.14
3310 3353 7.312899 ACGGAAGGAAAACTGCTAAAATTATG 58.687 34.615 0.00 0.00 0.00 1.90
3312 3355 6.887626 ACGGAAGGAAAACTGCTAAAATTA 57.112 33.333 0.00 0.00 0.00 1.40
3313 3356 5.784578 ACGGAAGGAAAACTGCTAAAATT 57.215 34.783 0.00 0.00 0.00 1.82
3316 3359 6.696441 TTTTACGGAAGGAAAACTGCTAAA 57.304 33.333 0.00 0.00 46.38 1.85
3334 3386 9.634163 ACGGATAAGAATGGAATTTGTTTTTAC 57.366 29.630 0.00 0.00 36.07 2.01
3402 3786 1.369692 GTGGTGATGGGTCGTGTGA 59.630 57.895 0.00 0.00 0.00 3.58
3467 3851 4.883585 ACGGCAACATATGATCTCACAAAT 59.116 37.500 10.38 0.00 0.00 2.32
3539 3924 8.224389 TCCTTTTGTATGATGATATTGTGGTG 57.776 34.615 0.00 0.00 0.00 4.17
3616 4001 4.970662 ATTGCATGTGACAGGTTGATAC 57.029 40.909 0.00 0.00 0.00 2.24
3664 4049 8.566260 GCAGAATATTCATGAAGTTAGCTCAAT 58.434 33.333 17.56 0.00 0.00 2.57
3684 4069 1.561076 TGCACATCCCTGTAGCAGAAT 59.439 47.619 0.00 0.00 35.74 2.40
3685 4070 0.983467 TGCACATCCCTGTAGCAGAA 59.017 50.000 0.00 0.00 35.74 3.02
3819 4204 8.922676 GTGATAGAAACAGAAACTTACGATGAA 58.077 33.333 0.00 0.00 0.00 2.57
3848 4233 8.737175 AGCAAATAAGATACATAGCCAATCATG 58.263 33.333 0.00 0.00 0.00 3.07
3864 4250 2.489938 ACCCGCTTGAGCAAATAAGA 57.510 45.000 3.65 0.00 42.21 2.10
3881 4267 4.810191 TGGTACAAAATGGGCAATTACC 57.190 40.909 0.00 0.00 31.92 2.85
3904 4292 2.071540 GTTTGTAACTGACGGGGTAGC 58.928 52.381 0.00 0.00 0.00 3.58
3910 4298 5.934935 ATTTACAGGTTTGTAACTGACGG 57.065 39.130 0.00 0.00 46.53 4.79
3915 4303 4.896482 TGGGCAATTTACAGGTTTGTAACT 59.104 37.500 0.00 0.00 46.53 2.24
3932 4321 3.311167 AGTATGGTGCAATATGGGCAA 57.689 42.857 4.07 0.00 43.91 4.52
3940 4329 3.938963 CGGACAAAGTAGTATGGTGCAAT 59.061 43.478 0.00 0.00 0.00 3.56
3956 4345 3.132160 TGAGCGATTTTGTAACGGACAA 58.868 40.909 1.38 1.38 46.56 3.18
3957 4346 2.756829 TGAGCGATTTTGTAACGGACA 58.243 42.857 0.00 0.00 35.78 4.02
4003 4411 2.351418 CACGTGAAAGACTTGCACTGAA 59.649 45.455 21.56 0.00 0.00 3.02
4010 4418 5.462068 TCATAAGTGACACGTGAAAGACTTG 59.538 40.000 25.01 12.77 0.00 3.16
4038 4446 2.684881 CGGGTTGCAATAATGAGAGCTT 59.315 45.455 0.59 0.00 0.00 3.74
4072 4517 7.531857 AGAGATTTTGAGTCTAGACAAGTGA 57.468 36.000 24.44 8.03 0.00 3.41
4104 4549 8.338259 CAAATCAGGTGATAAATACAGTAGCAC 58.662 37.037 0.00 0.00 37.18 4.40
4113 4558 7.994911 AGCTGTGATCAAATCAGGTGATAAATA 59.005 33.333 13.81 0.00 40.53 1.40
4116 4561 5.748402 AGCTGTGATCAAATCAGGTGATAA 58.252 37.500 13.81 0.00 40.53 1.75
4187 4632 9.950680 CACATATAATTTGACCCATGTTAAGTC 57.049 33.333 0.00 0.00 0.00 3.01
4204 4649 8.284945 ACATGCTCAAGTTGAACACATATAAT 57.715 30.769 11.04 0.00 0.00 1.28
4206 4651 8.040727 ACTACATGCTCAAGTTGAACACATATA 58.959 33.333 11.04 6.17 0.00 0.86
4208 4653 6.230472 ACTACATGCTCAAGTTGAACACATA 58.770 36.000 11.04 6.22 0.00 2.29
4233 4708 8.902806 CCAGGAATTGACTGCAATAATTAGTAA 58.097 33.333 0.00 0.00 43.71 2.24
4234 4709 8.271458 TCCAGGAATTGACTGCAATAATTAGTA 58.729 33.333 0.00 0.00 43.71 1.82
4235 4710 7.118723 TCCAGGAATTGACTGCAATAATTAGT 58.881 34.615 0.00 0.00 43.71 2.24
4236 4711 7.572523 TCCAGGAATTGACTGCAATAATTAG 57.427 36.000 0.00 0.00 43.71 1.73
4255 4730 1.278985 TCTACACAAGTGGCATCCAGG 59.721 52.381 5.08 0.00 32.34 4.45
4269 4744 7.625553 CAAGAGTATAGCAAGCATTTCTACAC 58.374 38.462 0.00 0.00 0.00 2.90
4276 4751 3.629398 GTGGCAAGAGTATAGCAAGCATT 59.371 43.478 0.00 0.00 0.00 3.56
4277 4752 3.118112 AGTGGCAAGAGTATAGCAAGCAT 60.118 43.478 0.00 0.00 0.00 3.79
4279 4754 2.869192 GAGTGGCAAGAGTATAGCAAGC 59.131 50.000 0.00 0.00 0.00 4.01
4280 4755 3.868077 GTGAGTGGCAAGAGTATAGCAAG 59.132 47.826 0.00 0.00 0.00 4.01
4283 4758 3.131223 TCAGTGAGTGGCAAGAGTATAGC 59.869 47.826 0.00 0.00 0.00 2.97
4286 4761 2.499289 CCTCAGTGAGTGGCAAGAGTAT 59.501 50.000 18.74 0.00 32.12 2.12
4287 4762 1.895798 CCTCAGTGAGTGGCAAGAGTA 59.104 52.381 18.74 0.00 32.12 2.59
4312 4795 8.801715 TTTTGTTTCAAATAGCTTGATCTGAC 57.198 30.769 0.00 0.00 43.64 3.51
4322 4805 7.876896 TCGGGTAATTTTTGTTTCAAATAGC 57.123 32.000 0.00 0.00 0.00 2.97
4327 4810 9.250624 CACTAATTCGGGTAATTTTTGTTTCAA 57.749 29.630 0.00 0.00 38.71 2.69
4333 4816 6.475402 GCATCCACTAATTCGGGTAATTTTTG 59.525 38.462 0.00 0.00 38.71 2.44
4334 4817 6.153680 TGCATCCACTAATTCGGGTAATTTTT 59.846 34.615 0.00 0.00 38.71 1.94
4344 4827 6.252015 CAGAATTGTTTGCATCCACTAATTCG 59.748 38.462 0.00 0.00 37.83 3.34
4353 4836 4.022068 TCCAAGACAGAATTGTTTGCATCC 60.022 41.667 0.00 0.00 37.76 3.51
4362 4845 7.655490 ACAGAAAAGAATCCAAGACAGAATTG 58.345 34.615 0.00 0.00 0.00 2.32
4367 4850 5.009410 AGCAACAGAAAAGAATCCAAGACAG 59.991 40.000 0.00 0.00 0.00 3.51
4369 4852 5.444663 AGCAACAGAAAAGAATCCAAGAC 57.555 39.130 0.00 0.00 0.00 3.01
4370 4853 5.360714 ACAAGCAACAGAAAAGAATCCAAGA 59.639 36.000 0.00 0.00 0.00 3.02
4371 4854 5.461078 CACAAGCAACAGAAAAGAATCCAAG 59.539 40.000 0.00 0.00 0.00 3.61
4372 4855 5.350633 CACAAGCAACAGAAAAGAATCCAA 58.649 37.500 0.00 0.00 0.00 3.53
4374 4857 4.301628 CCACAAGCAACAGAAAAGAATCC 58.698 43.478 0.00 0.00 0.00 3.01
4375 4858 4.037923 TCCCACAAGCAACAGAAAAGAATC 59.962 41.667 0.00 0.00 0.00 2.52
4376 4859 3.960102 TCCCACAAGCAACAGAAAAGAAT 59.040 39.130 0.00 0.00 0.00 2.40
4382 4866 1.425066 AGGATCCCACAAGCAACAGAA 59.575 47.619 8.55 0.00 0.00 3.02
4384 4868 2.787473 TAGGATCCCACAAGCAACAG 57.213 50.000 8.55 0.00 0.00 3.16
4397 4881 8.677300 TGTTGACTGCTGAAAAATATTAGGATC 58.323 33.333 0.00 0.00 0.00 3.36
4415 4899 7.529880 AAAAAGAGCAGAAATTTGTTGACTG 57.470 32.000 0.00 0.00 0.00 3.51
4416 4900 9.305925 CTTAAAAAGAGCAGAAATTTGTTGACT 57.694 29.630 0.00 0.00 0.00 3.41
4480 4964 7.485277 CAGAAAACAATACAACGTTAAACACCA 59.515 33.333 0.00 0.00 0.00 4.17
4573 5057 5.804944 TTTCCAAGGCTGAAATGAAATGA 57.195 34.783 0.00 0.00 0.00 2.57
4581 5065 7.154191 AGAGGATATATTTCCAAGGCTGAAA 57.846 36.000 13.88 2.89 38.32 2.69
4582 5066 6.770286 AGAGGATATATTTCCAAGGCTGAA 57.230 37.500 13.88 0.00 38.32 3.02
4583 5067 7.019388 ACTAGAGGATATATTTCCAAGGCTGA 58.981 38.462 13.88 0.00 38.32 4.26
4584 5068 7.251321 ACTAGAGGATATATTTCCAAGGCTG 57.749 40.000 13.88 2.84 38.32 4.85
4585 5069 7.880265 AACTAGAGGATATATTTCCAAGGCT 57.120 36.000 13.88 8.05 38.32 4.58
4589 5073 8.603304 GGCCTAAACTAGAGGATATATTTCCAA 58.397 37.037 13.88 0.00 38.32 3.53
4590 5074 7.182206 GGGCCTAAACTAGAGGATATATTTCCA 59.818 40.741 13.88 0.00 38.32 3.53
4591 5075 7.182206 TGGGCCTAAACTAGAGGATATATTTCC 59.818 40.741 4.53 4.12 35.99 3.13
4592 5076 8.147244 TGGGCCTAAACTAGAGGATATATTTC 57.853 38.462 4.53 0.00 35.99 2.17
4593 5077 8.701643 ATGGGCCTAAACTAGAGGATATATTT 57.298 34.615 4.53 0.00 35.99 1.40
4640 5124 6.701400 GTCAGTTTACTTGCAACCATGAAAAT 59.299 34.615 0.00 0.00 0.00 1.82
4715 5199 6.307155 CAATACTTTTCCAAAGCAGTAGACG 58.693 40.000 0.00 0.00 0.00 4.18
4928 5412 5.679601 GAAGACCTAGGATTCAAGCAAGAT 58.320 41.667 17.98 0.00 0.00 2.40
5114 5598 3.118408 TGTTATCATCCCTTGAAGGACCG 60.118 47.826 13.97 0.00 39.24 4.79
5243 5727 1.404717 CCTCAATCCTCTGTGTCACGG 60.405 57.143 5.35 5.35 0.00 4.94
5286 5770 4.407365 CACCTCTGTTAACCCAAAGGATT 58.593 43.478 15.53 0.00 36.73 3.01
5501 5985 1.696097 AAACCAGAGCCACTCCACGT 61.696 55.000 0.00 0.00 0.00 4.49
5592 6081 7.660112 ACAATGAAACAATCAATTACAGCAGA 58.340 30.769 0.00 0.00 42.54 4.26
5649 6138 4.700213 GCTAGAACAGAAATAACCAAGCCA 59.300 41.667 0.00 0.00 0.00 4.75
5720 6218 2.223386 CGCGGTGTTTTCTCTCCAAAAA 60.223 45.455 0.00 0.00 0.00 1.94
5721 6219 1.332375 CGCGGTGTTTTCTCTCCAAAA 59.668 47.619 0.00 0.00 0.00 2.44
5722 6220 0.941542 CGCGGTGTTTTCTCTCCAAA 59.058 50.000 0.00 0.00 0.00 3.28
5723 6221 0.882927 CCGCGGTGTTTTCTCTCCAA 60.883 55.000 19.50 0.00 0.00 3.53
5740 6238 1.600636 TCTTTGAACTGGGCTGCCG 60.601 57.895 13.40 1.87 0.00 5.69
5742 6240 0.538287 AGGTCTTTGAACTGGGCTGC 60.538 55.000 0.00 0.00 0.00 5.25
5754 6252 3.312736 TTGGCCTTTTCTCAGGTCTTT 57.687 42.857 3.32 0.00 39.57 2.52
5865 6363 2.034842 GCTACAAGCGCTGTACATTACG 60.035 50.000 12.58 2.17 39.64 3.18
5977 6478 0.823356 GTTCTTTGCCCAGTGCCAGA 60.823 55.000 0.00 0.00 40.16 3.86
6041 6549 4.026300 CTCGTGAAGAGGAGCCCT 57.974 61.111 0.00 0.00 43.20 5.19
6055 6563 2.223595 ACATACTTCATCGCTGACCTCG 60.224 50.000 0.00 0.00 0.00 4.63
6057 6565 3.954904 AGTACATACTTCATCGCTGACCT 59.045 43.478 0.00 0.00 31.13 3.85
6058 6566 4.291783 GAGTACATACTTCATCGCTGACC 58.708 47.826 0.00 0.00 36.50 4.02
6070 6578 2.244252 AGGAACGGAGGGAGTACATACT 59.756 50.000 0.00 0.00 39.71 2.12
6071 6579 2.664015 AGGAACGGAGGGAGTACATAC 58.336 52.381 0.00 0.00 0.00 2.39
6072 6580 4.524802 TTAGGAACGGAGGGAGTACATA 57.475 45.455 0.00 0.00 0.00 2.29
6073 6581 3.393426 TTAGGAACGGAGGGAGTACAT 57.607 47.619 0.00 0.00 0.00 2.29
6074 6582 2.905415 TTAGGAACGGAGGGAGTACA 57.095 50.000 0.00 0.00 0.00 2.90
6075 6583 6.416631 AATATTTAGGAACGGAGGGAGTAC 57.583 41.667 0.00 0.00 0.00 2.73
6076 6584 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
6077 6585 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
6078 6586 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
6079 6587 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
6080 6588 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
6081 6589 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
6082 6590 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
6083 6591 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
6084 6592 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
6097 6605 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
6098 6606 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
6099 6607 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
6100 6608 8.594881 TCACTTGTTGAAATCTCTAGAAAGAC 57.405 34.615 0.00 0.00 0.00 3.01
6101 6609 8.424918 ACTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 32.21 2.52
6102 6610 8.600449 ACTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 32.21 2.62
6103 6611 9.477484 GTACTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 32.21 2.52
6104 6612 8.638873 TGTACTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 32.21 2.10
6105 6613 8.178313 TGTACTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 32.21 2.43
6106 6614 8.994429 ATGTACTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 32.21 2.43
6107 6615 9.856488 GTATGTACTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 32.21 2.43
6108 6616 7.542477 CGTATGTACTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 32.21 3.10
6109 6617 7.541091 TCGTATGTACTCACTTGTTGAAATCTC 59.459 37.037 0.00 0.00 32.21 2.75
6110 6618 7.375834 TCGTATGTACTCACTTGTTGAAATCT 58.624 34.615 0.00 0.00 32.21 2.40
6111 6619 7.576750 TCGTATGTACTCACTTGTTGAAATC 57.423 36.000 0.00 0.00 32.21 2.17
6112 6620 7.360101 GCTTCGTATGTACTCACTTGTTGAAAT 60.360 37.037 0.00 0.00 32.21 2.17
6113 6621 6.073980 GCTTCGTATGTACTCACTTGTTGAAA 60.074 38.462 0.00 0.00 32.21 2.69
6114 6622 5.404366 GCTTCGTATGTACTCACTTGTTGAA 59.596 40.000 0.00 0.00 32.21 2.69
6115 6623 4.921515 GCTTCGTATGTACTCACTTGTTGA 59.078 41.667 0.00 0.00 0.00 3.18
6116 6624 4.684242 TGCTTCGTATGTACTCACTTGTTG 59.316 41.667 0.00 0.00 0.00 3.33
6117 6625 4.878439 TGCTTCGTATGTACTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
6118 6626 4.514781 TGCTTCGTATGTACTCACTTGT 57.485 40.909 0.00 0.00 0.00 3.16
6119 6627 5.839262 TTTGCTTCGTATGTACTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
6120 6628 6.649141 TCATTTTGCTTCGTATGTACTCACTT 59.351 34.615 0.00 0.00 0.00 3.16
6121 6629 6.163476 TCATTTTGCTTCGTATGTACTCACT 58.837 36.000 0.00 0.00 0.00 3.41
6122 6630 6.090898 ACTCATTTTGCTTCGTATGTACTCAC 59.909 38.462 0.00 0.00 0.00 3.51
6123 6631 6.090763 CACTCATTTTGCTTCGTATGTACTCA 59.909 38.462 0.00 0.00 0.00 3.41
6124 6632 6.310467 TCACTCATTTTGCTTCGTATGTACTC 59.690 38.462 0.00 0.00 0.00 2.59
6125 6633 6.163476 TCACTCATTTTGCTTCGTATGTACT 58.837 36.000 0.00 0.00 0.00 2.73
6126 6634 6.403333 TCACTCATTTTGCTTCGTATGTAC 57.597 37.500 0.00 0.00 0.00 2.90
6127 6635 7.609760 ATTCACTCATTTTGCTTCGTATGTA 57.390 32.000 0.00 0.00 0.00 2.29
6128 6636 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
6129 6637 7.801547 AAATTCACTCATTTTGCTTCGTATG 57.198 32.000 0.00 0.00 0.00 2.39
6130 6638 8.511321 TGTAAATTCACTCATTTTGCTTCGTAT 58.489 29.630 0.00 0.00 0.00 3.06
6131 6639 7.801315 GTGTAAATTCACTCATTTTGCTTCGTA 59.199 33.333 0.00 0.00 35.68 3.43
6132 6640 6.636850 GTGTAAATTCACTCATTTTGCTTCGT 59.363 34.615 0.00 0.00 35.68 3.85
6133 6641 6.857964 AGTGTAAATTCACTCATTTTGCTTCG 59.142 34.615 0.00 0.00 44.07 3.79
6208 6716 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
6209 6717 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
6210 6718 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
6211 6719 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
6212 6720 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
6213 6721 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
6214 6722 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
6215 6723 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
6216 6724 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
6217 6725 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
6218 6726 5.303845 GTGTACTCCCTCCGTTCCTAAATAT 59.696 44.000 0.00 0.00 0.00 1.28
6219 6727 4.646492 GTGTACTCCCTCCGTTCCTAAATA 59.354 45.833 0.00 0.00 0.00 1.40
6220 6728 3.450096 GTGTACTCCCTCCGTTCCTAAAT 59.550 47.826 0.00 0.00 0.00 1.40
6221 6729 2.827921 GTGTACTCCCTCCGTTCCTAAA 59.172 50.000 0.00 0.00 0.00 1.85
6222 6730 2.042162 AGTGTACTCCCTCCGTTCCTAA 59.958 50.000 0.00 0.00 0.00 2.69
6223 6731 1.637553 AGTGTACTCCCTCCGTTCCTA 59.362 52.381 0.00 0.00 0.00 2.94
6224 6732 0.408700 AGTGTACTCCCTCCGTTCCT 59.591 55.000 0.00 0.00 0.00 3.36
6225 6733 0.531200 CAGTGTACTCCCTCCGTTCC 59.469 60.000 0.00 0.00 0.00 3.62
6226 6734 1.254954 ACAGTGTACTCCCTCCGTTC 58.745 55.000 0.00 0.00 0.00 3.95
6227 6735 2.592102 TACAGTGTACTCCCTCCGTT 57.408 50.000 0.00 0.00 0.00 4.44
6228 6736 2.040813 TCTTACAGTGTACTCCCTCCGT 59.959 50.000 1.43 0.00 0.00 4.69
6229 6737 2.719739 TCTTACAGTGTACTCCCTCCG 58.280 52.381 1.43 0.00 0.00 4.63
6230 6738 5.655532 TGTATTCTTACAGTGTACTCCCTCC 59.344 44.000 1.43 0.00 33.37 4.30
6231 6739 6.770746 TGTATTCTTACAGTGTACTCCCTC 57.229 41.667 1.43 0.00 33.37 4.30
6232 6740 7.287235 GGTATGTATTCTTACAGTGTACTCCCT 59.713 40.741 1.43 0.00 41.49 4.20
6233 6741 7.069085 TGGTATGTATTCTTACAGTGTACTCCC 59.931 40.741 1.43 0.00 41.49 4.30
6234 6742 8.004087 TGGTATGTATTCTTACAGTGTACTCC 57.996 38.462 1.43 0.00 41.49 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.