Multiple sequence alignment - TraesCS4B01G055400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G055400 chr4B 100.000 3383 0 0 1 3383 43794019 43790637 0.000000e+00 6248.0
1 TraesCS4B01G055400 chr4B 86.543 1345 179 2 1033 2376 43786673 43788016 0.000000e+00 1480.0
2 TraesCS4B01G055400 chr4B 85.180 722 103 3 1658 2376 43772046 43771326 0.000000e+00 737.0
3 TraesCS4B01G055400 chr4B 81.952 543 55 21 2654 3160 427274839 427274304 1.450000e-113 420.0
4 TraesCS4B01G055400 chr4B 98.551 69 1 0 685 753 43793267 43793335 4.580000e-24 122.0
5 TraesCS4B01G055400 chr4D 92.319 2721 149 31 719 3383 30558323 30555607 0.000000e+00 3812.0
6 TraesCS4B01G055400 chr4D 88.646 1603 132 23 837 2389 30513620 30515222 0.000000e+00 1906.0
7 TraesCS4B01G055400 chr4D 87.270 1359 166 6 1033 2389 30523568 30524921 0.000000e+00 1544.0
8 TraesCS4B01G055400 chr4D 87.327 939 114 4 1033 1967 30518399 30519336 0.000000e+00 1070.0
9 TraesCS4B01G055400 chr4D 91.563 723 51 7 1 719 30559102 30558386 0.000000e+00 989.0
10 TraesCS4B01G055400 chr4D 84.991 533 51 11 2654 3161 463467992 463468520 6.470000e-142 514.0
11 TraesCS4B01G055400 chr4D 82.255 541 57 18 2654 3160 69481090 69481625 6.710000e-117 431.0
12 TraesCS4B01G055400 chr4D 82.070 541 60 19 2654 3160 427612081 427612618 8.670000e-116 427.0
13 TraesCS4B01G055400 chr4D 100.000 34 0 0 720 753 30558387 30558420 2.820000e-06 63.9
14 TraesCS4B01G055400 chr4A 90.130 1773 134 18 720 2464 572507231 572505472 0.000000e+00 2266.0
15 TraesCS4B01G055400 chr4A 88.452 1931 144 33 719 2618 572301982 572303864 0.000000e+00 2257.0
16 TraesCS4B01G055400 chr4A 84.969 958 124 14 1450 2403 572312642 572311701 0.000000e+00 953.0
17 TraesCS4B01G055400 chr4A 85.857 700 94 4 1033 1728 572307570 572308268 0.000000e+00 739.0
18 TraesCS4B01G055400 chr4A 77.347 1289 236 38 1111 2361 24855016 24853746 0.000000e+00 712.0
19 TraesCS4B01G055400 chr4A 87.934 605 69 3 1788 2389 572308269 572308872 0.000000e+00 710.0
20 TraesCS4B01G055400 chr4A 89.848 394 35 5 1 391 572300578 572300969 5.040000e-138 501.0
21 TraesCS4B01G055400 chr4A 92.116 241 12 2 470 703 572300970 572301210 1.950000e-87 333.0
22 TraesCS4B01G055400 chr4A 88.596 114 7 2 2509 2622 572505473 572505366 2.120000e-27 134.0
23 TraesCS4B01G055400 chr4A 97.059 34 1 0 685 718 572302016 572301983 1.310000e-04 58.4
24 TraesCS4B01G055400 chr4A 92.308 39 2 1 691 728 572507284 572507322 2.000000e-03 54.7
25 TraesCS4B01G055400 chr4A 100.000 28 0 0 720 747 572507311 572507284 6.000000e-03 52.8
26 TraesCS4B01G055400 chr3D 85.985 528 50 14 2654 3168 137020461 137019945 8.260000e-151 544.0
27 TraesCS4B01G055400 chr3D 79.039 458 54 16 2654 3075 306506210 306505759 3.330000e-70 276.0
28 TraesCS4B01G055400 chr1D 86.547 446 43 10 2735 3168 483684294 483683854 3.050000e-130 475.0
29 TraesCS4B01G055400 chr1D 82.674 531 62 14 2654 3161 90576880 90577403 8.610000e-121 444.0
30 TraesCS4B01G055400 chr1B 83.462 520 66 10 2654 3161 145344685 145345196 1.840000e-127 466.0
31 TraesCS4B01G055400 chr1B 84.817 382 52 4 2782 3161 289285165 289284788 2.460000e-101 379.0
32 TraesCS4B01G055400 chr1B 95.312 128 4 1 2654 2781 259798344 259798219 5.720000e-48 202.0
33 TraesCS4B01G055400 chr5D 81.967 549 59 17 2654 3168 230374654 230374112 2.410000e-116 429.0
34 TraesCS4B01G055400 chr3B 81.868 546 49 16 2654 3168 735968642 735968116 6.750000e-112 414.0
35 TraesCS4B01G055400 chr7B 80.917 545 63 15 2654 3163 736464892 736464354 3.160000e-105 392.0
36 TraesCS4B01G055400 chr6D 84.977 213 17 8 2654 2855 377538627 377538419 5.720000e-48 202.0
37 TraesCS4B01G055400 chr7A 93.182 44 2 1 2579 2622 533551375 533551333 2.820000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G055400 chr4B 43790637 43794019 3382 True 6248.0 6248 100.000000 1 3383 1 chr4B.!!$R2 3382
1 TraesCS4B01G055400 chr4B 43786673 43788016 1343 False 1480.0 1480 86.543000 1033 2376 1 chr4B.!!$F1 1343
2 TraesCS4B01G055400 chr4B 43771326 43772046 720 True 737.0 737 85.180000 1658 2376 1 chr4B.!!$R1 718
3 TraesCS4B01G055400 chr4B 427274304 427274839 535 True 420.0 420 81.952000 2654 3160 1 chr4B.!!$R3 506
4 TraesCS4B01G055400 chr4D 30555607 30559102 3495 True 2400.5 3812 91.941000 1 3383 2 chr4D.!!$R1 3382
5 TraesCS4B01G055400 chr4D 30523568 30524921 1353 False 1544.0 1544 87.270000 1033 2389 1 chr4D.!!$F1 1356
6 TraesCS4B01G055400 chr4D 30513620 30519336 5716 False 1488.0 1906 87.986500 837 2389 2 chr4D.!!$F6 1552
7 TraesCS4B01G055400 chr4D 463467992 463468520 528 False 514.0 514 84.991000 2654 3161 1 chr4D.!!$F5 507
8 TraesCS4B01G055400 chr4D 69481090 69481625 535 False 431.0 431 82.255000 2654 3160 1 chr4D.!!$F3 506
9 TraesCS4B01G055400 chr4D 427612081 427612618 537 False 427.0 427 82.070000 2654 3160 1 chr4D.!!$F4 506
10 TraesCS4B01G055400 chr4A 572311701 572312642 941 True 953.0 953 84.969000 1450 2403 1 chr4A.!!$R3 953
11 TraesCS4B01G055400 chr4A 572300578 572308872 8294 False 908.0 2257 88.841400 1 2618 5 chr4A.!!$F2 2617
12 TraesCS4B01G055400 chr4A 572505366 572507311 1945 True 817.6 2266 92.908667 720 2622 3 chr4A.!!$R4 1902
13 TraesCS4B01G055400 chr4A 24853746 24855016 1270 True 712.0 712 77.347000 1111 2361 1 chr4A.!!$R1 1250
14 TraesCS4B01G055400 chr3D 137019945 137020461 516 True 544.0 544 85.985000 2654 3168 1 chr3D.!!$R1 514
15 TraesCS4B01G055400 chr1D 90576880 90577403 523 False 444.0 444 82.674000 2654 3161 1 chr1D.!!$F1 507
16 TraesCS4B01G055400 chr1B 145344685 145345196 511 False 466.0 466 83.462000 2654 3161 1 chr1B.!!$F1 507
17 TraesCS4B01G055400 chr5D 230374112 230374654 542 True 429.0 429 81.967000 2654 3168 1 chr5D.!!$R1 514
18 TraesCS4B01G055400 chr3B 735968116 735968642 526 True 414.0 414 81.868000 2654 3168 1 chr3B.!!$R1 514
19 TraesCS4B01G055400 chr7B 736464354 736464892 538 True 392.0 392 80.917000 2654 3163 1 chr7B.!!$R1 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
903 1790 1.288127 GGTACGTTGCCGTCAGAGT 59.712 57.895 0.0 0.0 46.28 3.24 F
1677 2618 0.250684 TCTTCGTCAAAGCCATGCCA 60.251 50.000 0.0 0.0 34.76 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1728 2670 0.232303 CTTTGGTCAGCGTGAACGTC 59.768 55.0 4.59 0.0 36.73 4.34 R
3336 8403 0.171007 CAGCCGGCGAAAACATCATT 59.829 50.0 23.20 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
139 140 5.355910 CCAATGGTATTTAGCGGTAACACTT 59.644 40.000 6.56 0.00 0.00 3.16
142 143 6.484818 TGGTATTTAGCGGTAACACTTTTC 57.515 37.500 6.56 0.00 0.00 2.29
187 189 8.835467 TTCAACAAAAGATAAAACTCTCAACG 57.165 30.769 0.00 0.00 0.00 4.10
252 254 1.590610 ATGTTGCCCGCGCATTTACA 61.591 50.000 8.75 4.95 46.67 2.41
274 276 1.541588 GGGCCAGTTTGCTAGTTTCTG 59.458 52.381 4.39 0.00 0.00 3.02
283 285 6.037610 CAGTTTGCTAGTTTCTGAGAACAACT 59.962 38.462 5.05 5.05 31.94 3.16
286 288 6.156748 TGCTAGTTTCTGAGAACAACTACA 57.843 37.500 0.00 0.89 31.94 2.74
288 290 7.045416 TGCTAGTTTCTGAGAACAACTACAAA 58.955 34.615 0.00 0.00 31.94 2.83
289 291 7.224753 TGCTAGTTTCTGAGAACAACTACAAAG 59.775 37.037 0.00 0.00 31.94 2.77
297 301 8.612619 TCTGAGAACAACTACAAAGAAAATGTC 58.387 33.333 0.00 0.00 32.27 3.06
329 333 6.345096 AGGTAAACTTGTCATTCCAAATGG 57.655 37.500 0.00 0.00 0.00 3.16
340 344 4.099881 TCATTCCAAATGGCTTATCCTTGC 59.900 41.667 0.00 0.00 35.26 4.01
414 418 6.832520 TGTTATGATGTTTATGTGGCTTGT 57.167 33.333 0.00 0.00 0.00 3.16
417 421 8.147058 TGTTATGATGTTTATGTGGCTTGTTTT 58.853 29.630 0.00 0.00 0.00 2.43
422 426 6.412362 TGTTTATGTGGCTTGTTTTATGGT 57.588 33.333 0.00 0.00 0.00 3.55
427 431 6.709018 ATGTGGCTTGTTTTATGGTATACC 57.291 37.500 15.50 15.50 0.00 2.73
613 622 4.715520 TCATTTAATCGCTGAGATTCGC 57.284 40.909 9.93 0.00 45.95 4.70
683 694 2.120232 CTATGAAACGCCGACAGCTAG 58.880 52.381 0.00 0.00 40.39 3.42
869 1753 2.812011 CCACGGGAAAACTCGAAATCTT 59.188 45.455 0.00 0.00 0.00 2.40
903 1790 1.288127 GGTACGTTGCCGTCAGAGT 59.712 57.895 0.00 0.00 46.28 3.24
933 1834 2.810852 GCAAGCCATACAGCCTTCTATC 59.189 50.000 0.00 0.00 0.00 2.08
966 1869 2.027377 CCTCTGCTTCATCACCAAGTCT 60.027 50.000 0.00 0.00 0.00 3.24
1029 1961 4.929198 CAGCAAGTGCAAGTTCCG 57.071 55.556 6.00 0.00 45.16 4.30
1037 1969 3.432186 GCAAGTTCCGGTGCAAGT 58.568 55.556 9.73 0.00 40.58 3.16
1158 2090 2.179517 GACGTCCTCTGGCTCACG 59.820 66.667 3.51 0.00 38.24 4.35
1261 2193 1.303074 CTGGCCAAAGCTCTCAGCA 60.303 57.895 7.01 0.00 45.56 4.41
1267 2199 1.677217 CCAAAGCTCTCAGCACCTACC 60.677 57.143 0.00 0.00 45.56 3.18
1378 2313 2.256158 CCAAGTACCGCGACGACA 59.744 61.111 8.23 0.00 0.00 4.35
1620 2561 1.407936 CCTCACCTCCTGTCATCGAT 58.592 55.000 0.00 0.00 0.00 3.59
1647 2588 2.775032 TAGTGAAGGACGCAACGGGC 62.775 60.000 0.00 0.00 39.90 6.13
1677 2618 0.250684 TCTTCGTCAAAGCCATGCCA 60.251 50.000 0.00 0.00 34.76 4.92
1887 2855 2.040813 AGCCAGAGATGAAGGAAGCAAA 59.959 45.455 0.00 0.00 0.00 3.68
1888 2856 2.821969 GCCAGAGATGAAGGAAGCAAAA 59.178 45.455 0.00 0.00 0.00 2.44
1898 2869 2.903547 GAAGCAAAAGCGGCGACCA 61.904 57.895 12.98 0.00 36.08 4.02
1926 2897 1.002990 GGTTTTCCCCGTCGACCAT 60.003 57.895 10.58 0.00 0.00 3.55
2529 3707 4.643334 CACAATGGTCACTGAATCCATCAT 59.357 41.667 2.42 0.00 40.52 2.45
2530 3708 4.643334 ACAATGGTCACTGAATCCATCATG 59.357 41.667 2.42 1.85 40.52 3.07
2531 3709 2.646930 TGGTCACTGAATCCATCATGC 58.353 47.619 0.00 0.00 37.44 4.06
2532 3710 2.026075 TGGTCACTGAATCCATCATGCA 60.026 45.455 0.00 0.00 37.44 3.96
2533 3711 3.220110 GGTCACTGAATCCATCATGCAT 58.780 45.455 0.00 0.00 37.44 3.96
2534 3712 4.141436 TGGTCACTGAATCCATCATGCATA 60.141 41.667 0.00 0.00 37.44 3.14
2577 3761 5.697473 TGTTGGCACATTAATTTTCTCGA 57.303 34.783 0.00 0.00 39.30 4.04
2627 3811 5.644188 TCCAAATTTTCTTCCATGAGGAGT 58.356 37.500 0.00 0.00 46.74 3.85
2628 3812 6.789268 TCCAAATTTTCTTCCATGAGGAGTA 58.211 36.000 0.00 0.00 46.74 2.59
2630 3814 6.096001 CCAAATTTTCTTCCATGAGGAGTAGG 59.904 42.308 0.00 0.00 46.74 3.18
2631 3815 6.394345 AATTTTCTTCCATGAGGAGTAGGT 57.606 37.500 0.00 0.00 46.74 3.08
2637 3821 1.573108 CATGAGGAGTAGGTGGTGGT 58.427 55.000 0.00 0.00 0.00 4.16
2638 3822 1.208052 CATGAGGAGTAGGTGGTGGTG 59.792 57.143 0.00 0.00 0.00 4.17
2824 4210 3.458857 TGGAATTGCCATGGCCAAAATAT 59.541 39.130 33.44 15.93 43.33 1.28
3207 8127 3.288092 GGAAGTGGGGTGATGGTTTATC 58.712 50.000 0.00 0.00 36.29 1.75
3213 8133 3.332187 TGGGGTGATGGTTTATCTGTTGA 59.668 43.478 0.00 0.00 36.71 3.18
3225 8145 3.350909 CTGTTGATCGACCGCCGGA 62.351 63.158 11.71 0.00 39.14 5.14
3277 8343 0.842467 CTTCCCCTCACCCTCACCTT 60.842 60.000 0.00 0.00 0.00 3.50
3293 8359 1.746991 CTTCCCTCCCGCTTCTTGC 60.747 63.158 0.00 0.00 38.57 4.01
3310 8377 2.636462 CGATGGCAACGCACACAA 59.364 55.556 3.71 0.00 42.51 3.33
3336 8403 0.889994 GTGTTGCATTGAGGATGGCA 59.110 50.000 0.00 0.00 36.21 4.92
3354 9502 0.171007 CAATGATGTTTTCGCCGGCT 59.829 50.000 26.68 2.51 0.00 5.52
3378 9526 0.734889 GCCGTCACCATCATGAAAGG 59.265 55.000 14.22 14.22 33.85 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
139 140 7.984050 TGAATGATTTTTAGTTGCACCAAGAAA 59.016 29.630 0.00 0.00 0.00 2.52
142 143 7.224362 TGTTGAATGATTTTTAGTTGCACCAAG 59.776 33.333 0.00 0.00 0.00 3.61
225 227 0.802494 CGCGGGCAACATCTTTAGTT 59.198 50.000 0.00 0.00 39.74 2.24
252 254 0.179001 AAACTAGCAAACTGGCCCGT 60.179 50.000 0.00 0.00 0.00 5.28
274 276 9.226345 CAAGACATTTTCTTTGTAGTTGTTCTC 57.774 33.333 0.00 0.00 42.37 2.87
297 301 9.626045 GGAATGACAAGTTTACCTAATTTCAAG 57.374 33.333 0.00 0.00 0.00 3.02
313 317 5.361857 AGGATAAGCCATTTGGAATGACAAG 59.638 40.000 0.00 0.00 40.02 3.16
329 333 4.746611 GCATTACATTTGGCAAGGATAAGC 59.253 41.667 0.00 0.00 0.00 3.09
387 391 8.986847 CAAGCCACATAAACATCATAACAAAAA 58.013 29.630 0.00 0.00 0.00 1.94
388 392 8.147058 ACAAGCCACATAAACATCATAACAAAA 58.853 29.630 0.00 0.00 0.00 2.44
392 396 8.532977 AAAACAAGCCACATAAACATCATAAC 57.467 30.769 0.00 0.00 0.00 1.89
403 407 7.347252 TGGTATACCATAAAACAAGCCACATA 58.653 34.615 21.05 0.00 42.01 2.29
683 694 3.004106 GCATGCAGGATCCTTTCACATAC 59.996 47.826 13.00 5.03 0.00 2.39
796 1659 3.242316 GCGAACACGTTCTTGACTTCTTT 60.242 43.478 8.21 0.00 37.44 2.52
869 1753 2.676121 CCAATTCTGGTGGCGCCA 60.676 61.111 29.03 29.03 46.95 5.69
903 1790 3.378112 GCTGTATGGCTTGCTTACATCAA 59.622 43.478 8.51 0.00 0.00 2.57
966 1869 4.584638 ATTTGGTGGGAGTATGCACTTA 57.415 40.909 0.00 0.00 34.21 2.24
1029 1961 3.050275 GGTGGCGAGACTTGCACC 61.050 66.667 16.61 16.24 0.00 5.01
1037 1969 3.467226 GAATCGGGGGTGGCGAGA 61.467 66.667 0.00 0.00 0.00 4.04
1217 2149 3.009584 GGTCTTGAGGTTGGAGAGGATTT 59.990 47.826 0.00 0.00 0.00 2.17
1218 2150 2.573915 GGTCTTGAGGTTGGAGAGGATT 59.426 50.000 0.00 0.00 0.00 3.01
1598 2539 1.229625 ATGACAGGAGGTGAGGGCA 60.230 57.895 0.00 0.00 0.00 5.36
1602 2543 3.481453 TCTATCGATGACAGGAGGTGAG 58.519 50.000 8.54 0.00 0.00 3.51
1620 2561 3.682696 TGCGTCCTTCACTAGAGTTCTA 58.317 45.455 0.00 0.00 0.00 2.10
1629 2570 2.030562 CCCGTTGCGTCCTTCACT 59.969 61.111 0.00 0.00 0.00 3.41
1632 2573 4.699522 AGGCCCGTTGCGTCCTTC 62.700 66.667 0.00 0.00 42.61 3.46
1677 2618 2.518587 TCCATCTCGTCGGCCGAT 60.519 61.111 33.58 12.60 46.23 4.18
1728 2670 0.232303 CTTTGGTCAGCGTGAACGTC 59.768 55.000 4.59 0.00 36.73 4.34
1741 2683 3.067106 CACGCTGTATGTCTTCTTTGGT 58.933 45.455 0.00 0.00 0.00 3.67
1887 2855 2.221906 AATACGTCTGGTCGCCGCTT 62.222 55.000 0.00 0.00 0.00 4.68
1888 2856 2.221906 AAATACGTCTGGTCGCCGCT 62.222 55.000 0.00 0.00 0.00 5.52
1898 2869 2.224597 ACGGGGAAAACCAAATACGTCT 60.225 45.455 0.00 0.00 42.91 4.18
1905 2876 0.818852 GGTCGACGGGGAAAACCAAA 60.819 55.000 9.92 0.00 42.91 3.28
1911 2882 2.574929 CGATGGTCGACGGGGAAA 59.425 61.111 9.92 0.00 43.74 3.13
1939 2910 3.775654 GTCCGGGACTGGAGGCTG 61.776 72.222 19.92 0.00 39.14 4.85
1947 2921 3.085223 AGGTACTCGTCCGGGACT 58.915 61.111 23.86 8.99 0.00 3.85
2035 3009 3.172575 CGTGCACGCGACGAAGAT 61.173 61.111 28.16 0.00 39.21 2.40
2064 3038 3.449227 ACCGCTTCCTCGATCGCA 61.449 61.111 11.09 0.00 0.00 5.10
2219 3199 0.895530 GGACACGATCTCCACCTTGA 59.104 55.000 0.00 0.00 0.00 3.02
2268 3248 4.704833 GTGCTGCTCCGCCCTTCA 62.705 66.667 0.00 0.00 0.00 3.02
2530 3708 6.519382 TCACTAGCTATGGATATGCATATGC 58.481 40.000 26.32 26.32 42.50 3.14
2531 3709 8.148999 ACATCACTAGCTATGGATATGCATATG 58.851 37.037 23.76 12.44 0.00 1.78
2532 3710 8.260099 ACATCACTAGCTATGGATATGCATAT 57.740 34.615 19.17 19.17 0.00 1.78
2533 3711 7.666063 ACATCACTAGCTATGGATATGCATA 57.334 36.000 15.27 15.27 0.00 3.14
2534 3712 6.556974 ACATCACTAGCTATGGATATGCAT 57.443 37.500 14.59 14.59 0.00 3.96
2627 3811 2.611505 CCATGGCCACCACCACCTA 61.612 63.158 8.16 0.00 44.17 3.08
2628 3812 3.983420 CCATGGCCACCACCACCT 61.983 66.667 8.16 0.00 44.17 4.00
2630 3814 4.992740 TGCCATGGCCACCACCAC 62.993 66.667 33.44 3.62 44.17 4.16
2631 3815 4.682334 CTGCCATGGCCACCACCA 62.682 66.667 33.44 12.43 45.82 4.17
2637 3821 4.657408 TTGTCGCTGCCATGGCCA 62.657 61.111 33.44 20.58 41.09 5.36
2638 3822 3.818787 CTTGTCGCTGCCATGGCC 61.819 66.667 33.44 18.20 41.09 5.36
2651 3839 5.622914 GCTGAAACATATCATGGCAACTTGT 60.623 40.000 0.00 0.00 42.16 3.16
3207 8127 2.829043 TTCCGGCGGTCGATCAACAG 62.829 60.000 27.32 0.00 42.43 3.16
3213 8133 0.529992 GAGAAATTCCGGCGGTCGAT 60.530 55.000 27.32 15.42 42.43 3.59
3225 8145 3.119319 GAGGGGAAGAGGGAGAGAAATT 58.881 50.000 0.00 0.00 0.00 1.82
3293 8359 1.066656 CATTGTGTGCGTTGCCATCG 61.067 55.000 0.00 0.00 0.00 3.84
3329 8396 2.195922 GCGAAAACATCATTGCCATCC 58.804 47.619 0.00 0.00 0.00 3.51
3336 8403 0.171007 CAGCCGGCGAAAACATCATT 59.829 50.000 23.20 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.