Multiple sequence alignment - TraesCS4B01G053700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G053700 chr4B 100.000 4187 0 0 1 4187 42393089 42397275 0.000000e+00 7733.0
1 TraesCS4B01G053700 chr4B 80.597 536 92 12 2310 2839 486284795 486284266 1.810000e-108 403.0
2 TraesCS4B01G053700 chr4B 75.000 184 33 11 2387 2562 471653037 471653215 5.810000e-09 73.1
3 TraesCS4B01G053700 chr4A 92.754 1932 105 14 1402 3310 573327983 573326064 0.000000e+00 2760.0
4 TraesCS4B01G053700 chr4A 90.768 899 38 14 3314 4187 573326003 573325125 0.000000e+00 1158.0
5 TraesCS4B01G053700 chr4A 90.160 437 24 7 925 1358 573328410 573327990 6.120000e-153 551.0
6 TraesCS4B01G053700 chr4A 86.686 353 17 12 349 684 573328884 573328545 8.550000e-97 364.0
7 TraesCS4B01G053700 chr4A 100.000 47 0 0 755 801 573328548 573328502 2.070000e-13 87.9
8 TraesCS4B01G053700 chr4A 86.957 69 9 0 2387 2455 66338811 66338879 1.250000e-10 78.7
9 TraesCS4B01G053700 chr4D 96.173 1437 52 2 1870 3305 29828024 29829458 0.000000e+00 2346.0
10 TraesCS4B01G053700 chr4D 88.434 1513 55 38 354 1830 29826594 29828022 0.000000e+00 1714.0
11 TraesCS4B01G053700 chr4D 91.067 806 35 20 3382 4187 29829719 29830487 0.000000e+00 1055.0
12 TraesCS4B01G053700 chr4D 78.293 949 188 17 1897 2839 395382920 395381984 2.790000e-166 595.0
13 TraesCS4B01G053700 chr4D 75.543 184 32 11 2387 2562 384670697 384670875 1.250000e-10 78.7
14 TraesCS4B01G053700 chrUn 76.846 298 49 15 2376 2660 194663653 194663943 2.610000e-32 150.0
15 TraesCS4B01G053700 chr3B 84.211 152 22 2 194 344 438921053 438920903 3.370000e-31 147.0
16 TraesCS4B01G053700 chr5A 83.444 151 21 4 190 339 327399898 327400045 2.030000e-28 137.0
17 TraesCS4B01G053700 chr7A 76.000 300 48 21 2376 2660 35628575 35628865 2.630000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G053700 chr4B 42393089 42397275 4186 False 7733.00 7733 100.000000 1 4187 1 chr4B.!!$F1 4186
1 TraesCS4B01G053700 chr4B 486284266 486284795 529 True 403.00 403 80.597000 2310 2839 1 chr4B.!!$R1 529
2 TraesCS4B01G053700 chr4A 573325125 573328884 3759 True 984.18 2760 92.073600 349 4187 5 chr4A.!!$R1 3838
3 TraesCS4B01G053700 chr4D 29826594 29830487 3893 False 1705.00 2346 91.891333 354 4187 3 chr4D.!!$F2 3833
4 TraesCS4B01G053700 chr4D 395381984 395382920 936 True 595.00 595 78.293000 1897 2839 1 chr4D.!!$R1 942

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
439 448 0.034616 GATCCTGAGCCGAATCCCTG 59.965 60.0 0.0 0.0 0.0 4.45 F
661 674 0.178861 TTGCTCCCTCTTTCTCCCCT 60.179 55.0 0.0 0.0 0.0 4.79 F
1473 1509 0.242825 TCACGTAGGTTCTTCAGCCG 59.757 55.0 0.0 0.0 0.0 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1865 1916 0.390603 ACAGCGTTAACGGCATGCTA 60.391 50.000 27.82 0.00 40.23 3.49 R
1868 1919 1.134487 CCACAGCGTTAACGGCATG 59.866 57.895 27.82 19.44 40.23 4.06 R
3310 3511 0.037697 TGTCAGTGTGTCCATACGCC 60.038 55.000 0.00 0.00 35.12 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.764679 CGAAGGTTTGATGTTGATTCCA 57.235 40.909 0.00 0.00 0.00 3.53
26 27 4.726416 CGAAGGTTTGATGTTGATTCCAG 58.274 43.478 0.00 0.00 0.00 3.86
27 28 4.455533 CGAAGGTTTGATGTTGATTCCAGA 59.544 41.667 0.00 0.00 0.00 3.86
28 29 5.048782 CGAAGGTTTGATGTTGATTCCAGAA 60.049 40.000 0.00 0.00 0.00 3.02
29 30 6.514870 CGAAGGTTTGATGTTGATTCCAGAAA 60.515 38.462 0.00 0.00 0.00 2.52
30 31 6.729690 AGGTTTGATGTTGATTCCAGAAAA 57.270 33.333 0.00 0.00 0.00 2.29
31 32 6.752168 AGGTTTGATGTTGATTCCAGAAAAG 58.248 36.000 0.00 0.00 0.00 2.27
32 33 6.550854 AGGTTTGATGTTGATTCCAGAAAAGA 59.449 34.615 0.00 0.00 0.00 2.52
33 34 6.642540 GGTTTGATGTTGATTCCAGAAAAGAC 59.357 38.462 0.00 0.00 0.00 3.01
34 35 5.964958 TGATGTTGATTCCAGAAAAGACC 57.035 39.130 0.00 0.00 0.00 3.85
35 36 4.766891 TGATGTTGATTCCAGAAAAGACCC 59.233 41.667 0.00 0.00 0.00 4.46
36 37 4.453480 TGTTGATTCCAGAAAAGACCCT 57.547 40.909 0.00 0.00 0.00 4.34
37 38 4.144297 TGTTGATTCCAGAAAAGACCCTG 58.856 43.478 0.00 0.00 0.00 4.45
38 39 4.141274 TGTTGATTCCAGAAAAGACCCTGA 60.141 41.667 0.00 0.00 32.37 3.86
39 40 4.021102 TGATTCCAGAAAAGACCCTGAC 57.979 45.455 0.00 0.00 32.37 3.51
40 41 3.652869 TGATTCCAGAAAAGACCCTGACT 59.347 43.478 0.00 0.00 32.37 3.41
41 42 4.104738 TGATTCCAGAAAAGACCCTGACTT 59.895 41.667 0.00 0.00 32.37 3.01
42 43 3.492102 TCCAGAAAAGACCCTGACTTG 57.508 47.619 0.00 0.00 32.37 3.16
43 44 2.777692 TCCAGAAAAGACCCTGACTTGT 59.222 45.455 0.00 0.00 32.37 3.16
44 45 3.202151 TCCAGAAAAGACCCTGACTTGTT 59.798 43.478 0.00 0.00 32.37 2.83
45 46 3.954258 CCAGAAAAGACCCTGACTTGTTT 59.046 43.478 0.00 0.00 32.37 2.83
46 47 4.402474 CCAGAAAAGACCCTGACTTGTTTT 59.598 41.667 0.00 0.00 32.37 2.43
47 48 5.105351 CCAGAAAAGACCCTGACTTGTTTTT 60.105 40.000 0.00 0.00 32.37 1.94
48 49 6.096282 CCAGAAAAGACCCTGACTTGTTTTTA 59.904 38.462 0.00 0.00 32.37 1.52
49 50 7.201911 CCAGAAAAGACCCTGACTTGTTTTTAT 60.202 37.037 0.00 0.00 32.37 1.40
50 51 7.649306 CAGAAAAGACCCTGACTTGTTTTTATG 59.351 37.037 0.00 0.00 32.37 1.90
51 52 5.453567 AAGACCCTGACTTGTTTTTATGC 57.546 39.130 0.00 0.00 0.00 3.14
52 53 3.502211 AGACCCTGACTTGTTTTTATGCG 59.498 43.478 0.00 0.00 0.00 4.73
53 54 3.219281 ACCCTGACTTGTTTTTATGCGT 58.781 40.909 0.00 0.00 0.00 5.24
54 55 4.391155 ACCCTGACTTGTTTTTATGCGTA 58.609 39.130 0.00 0.00 0.00 4.42
55 56 4.214758 ACCCTGACTTGTTTTTATGCGTAC 59.785 41.667 0.00 0.00 0.00 3.67
56 57 4.214545 CCCTGACTTGTTTTTATGCGTACA 59.785 41.667 0.00 0.00 0.00 2.90
57 58 5.278071 CCCTGACTTGTTTTTATGCGTACAA 60.278 40.000 0.00 0.00 0.00 2.41
61 62 5.729665 CTTGTTTTTATGCGTACAAGCTG 57.270 39.130 6.41 0.00 40.46 4.24
62 63 5.425577 TTGTTTTTATGCGTACAAGCTGA 57.574 34.783 0.00 0.00 38.13 4.26
63 64 5.621197 TGTTTTTATGCGTACAAGCTGAT 57.379 34.783 0.00 0.00 38.13 2.90
64 65 5.389778 TGTTTTTATGCGTACAAGCTGATG 58.610 37.500 0.00 0.00 38.13 3.07
65 66 4.614555 TTTTATGCGTACAAGCTGATGG 57.385 40.909 0.00 0.00 38.13 3.51
66 67 2.979814 TATGCGTACAAGCTGATGGT 57.020 45.000 0.00 0.00 38.13 3.55
67 68 2.979814 ATGCGTACAAGCTGATGGTA 57.020 45.000 0.00 0.00 38.13 3.25
68 69 2.293677 TGCGTACAAGCTGATGGTAG 57.706 50.000 0.00 0.00 38.13 3.18
69 70 1.822371 TGCGTACAAGCTGATGGTAGA 59.178 47.619 0.00 0.00 38.13 2.59
70 71 2.232696 TGCGTACAAGCTGATGGTAGAA 59.767 45.455 0.00 0.00 38.13 2.10
71 72 3.118775 TGCGTACAAGCTGATGGTAGAAT 60.119 43.478 0.00 0.00 38.13 2.40
72 73 3.491267 GCGTACAAGCTGATGGTAGAATC 59.509 47.826 0.00 0.00 0.00 2.52
73 74 3.731216 CGTACAAGCTGATGGTAGAATCG 59.269 47.826 0.00 0.00 0.00 3.34
74 75 3.185246 ACAAGCTGATGGTAGAATCGG 57.815 47.619 0.00 0.00 36.23 4.18
75 76 2.501723 ACAAGCTGATGGTAGAATCGGT 59.498 45.455 0.00 0.00 35.67 4.69
76 77 3.704566 ACAAGCTGATGGTAGAATCGGTA 59.295 43.478 0.00 0.00 35.67 4.02
77 78 4.161565 ACAAGCTGATGGTAGAATCGGTAA 59.838 41.667 0.00 0.00 35.67 2.85
78 79 5.116180 CAAGCTGATGGTAGAATCGGTAAA 58.884 41.667 0.00 0.00 35.67 2.01
79 80 4.950050 AGCTGATGGTAGAATCGGTAAAG 58.050 43.478 0.00 0.00 35.67 1.85
80 81 4.058817 GCTGATGGTAGAATCGGTAAAGG 58.941 47.826 0.00 0.00 35.67 3.11
81 82 4.202223 GCTGATGGTAGAATCGGTAAAGGA 60.202 45.833 0.00 0.00 35.67 3.36
82 83 5.684030 GCTGATGGTAGAATCGGTAAAGGAA 60.684 44.000 0.00 0.00 35.67 3.36
83 84 6.302535 TGATGGTAGAATCGGTAAAGGAAA 57.697 37.500 0.00 0.00 0.00 3.13
84 85 6.713276 TGATGGTAGAATCGGTAAAGGAAAA 58.287 36.000 0.00 0.00 0.00 2.29
85 86 7.169591 TGATGGTAGAATCGGTAAAGGAAAAA 58.830 34.615 0.00 0.00 0.00 1.94
106 107 4.659111 AAACTTTTTGGTAGGGTTTCGG 57.341 40.909 0.00 0.00 0.00 4.30
107 108 3.301794 ACTTTTTGGTAGGGTTTCGGT 57.698 42.857 0.00 0.00 0.00 4.69
108 109 3.216800 ACTTTTTGGTAGGGTTTCGGTC 58.783 45.455 0.00 0.00 0.00 4.79
109 110 3.117776 ACTTTTTGGTAGGGTTTCGGTCT 60.118 43.478 0.00 0.00 0.00 3.85
110 111 4.102996 ACTTTTTGGTAGGGTTTCGGTCTA 59.897 41.667 0.00 0.00 0.00 2.59
111 112 4.914177 TTTTGGTAGGGTTTCGGTCTAT 57.086 40.909 0.00 0.00 0.00 1.98
112 113 4.914177 TTTGGTAGGGTTTCGGTCTATT 57.086 40.909 0.00 0.00 0.00 1.73
113 114 3.899052 TGGTAGGGTTTCGGTCTATTG 57.101 47.619 0.00 0.00 0.00 1.90
114 115 2.502538 TGGTAGGGTTTCGGTCTATTGG 59.497 50.000 0.00 0.00 0.00 3.16
115 116 2.158856 GGTAGGGTTTCGGTCTATTGGG 60.159 54.545 0.00 0.00 0.00 4.12
116 117 1.961133 AGGGTTTCGGTCTATTGGGA 58.039 50.000 0.00 0.00 0.00 4.37
117 118 1.838077 AGGGTTTCGGTCTATTGGGAG 59.162 52.381 0.00 0.00 0.00 4.30
118 119 1.664873 GGTTTCGGTCTATTGGGAGC 58.335 55.000 0.00 0.00 0.00 4.70
119 120 1.209747 GGTTTCGGTCTATTGGGAGCT 59.790 52.381 0.00 0.00 0.00 4.09
120 121 2.355818 GGTTTCGGTCTATTGGGAGCTT 60.356 50.000 0.00 0.00 0.00 3.74
121 122 3.344515 GTTTCGGTCTATTGGGAGCTTT 58.655 45.455 0.00 0.00 0.00 3.51
122 123 4.510571 GTTTCGGTCTATTGGGAGCTTTA 58.489 43.478 0.00 0.00 0.00 1.85
123 124 5.123936 GTTTCGGTCTATTGGGAGCTTTAT 58.876 41.667 0.00 0.00 0.00 1.40
124 125 4.602340 TCGGTCTATTGGGAGCTTTATC 57.398 45.455 0.00 0.00 0.00 1.75
125 126 4.223953 TCGGTCTATTGGGAGCTTTATCT 58.776 43.478 0.00 0.00 0.00 1.98
126 127 4.281182 TCGGTCTATTGGGAGCTTTATCTC 59.719 45.833 0.00 0.00 0.00 2.75
127 128 4.282195 CGGTCTATTGGGAGCTTTATCTCT 59.718 45.833 0.00 0.00 33.70 3.10
128 129 5.565834 CGGTCTATTGGGAGCTTTATCTCTC 60.566 48.000 0.00 0.00 34.18 3.20
129 130 5.465935 GTCTATTGGGAGCTTTATCTCTCG 58.534 45.833 0.00 0.00 36.36 4.04
130 131 5.241949 GTCTATTGGGAGCTTTATCTCTCGA 59.758 44.000 0.00 0.00 36.36 4.04
131 132 6.013379 TCTATTGGGAGCTTTATCTCTCGAT 58.987 40.000 0.00 0.00 40.10 3.59
132 133 7.121463 GTCTATTGGGAGCTTTATCTCTCGATA 59.879 40.741 0.00 0.00 38.37 2.92
133 134 6.865834 ATTGGGAGCTTTATCTCTCGATAT 57.134 37.500 0.00 0.00 36.22 1.63
134 135 7.962995 ATTGGGAGCTTTATCTCTCGATATA 57.037 36.000 0.00 0.00 36.22 0.86
135 136 7.776618 TTGGGAGCTTTATCTCTCGATATAA 57.223 36.000 0.00 0.00 36.36 0.98
136 137 7.776618 TGGGAGCTTTATCTCTCGATATAAA 57.223 36.000 0.00 0.00 36.36 1.40
137 138 8.367660 TGGGAGCTTTATCTCTCGATATAAAT 57.632 34.615 0.00 0.00 36.36 1.40
138 139 9.475620 TGGGAGCTTTATCTCTCGATATAAATA 57.524 33.333 0.00 0.00 36.36 1.40
262 263 9.626045 ATTCTTAGAAAAATCGACAATCAAACC 57.374 29.630 0.00 0.00 0.00 3.27
263 264 7.295201 TCTTAGAAAAATCGACAATCAAACCG 58.705 34.615 0.00 0.00 0.00 4.44
264 265 4.794169 AGAAAAATCGACAATCAAACCGG 58.206 39.130 0.00 0.00 0.00 5.28
265 266 4.277423 AGAAAAATCGACAATCAAACCGGT 59.723 37.500 0.00 0.00 0.00 5.28
266 267 3.552604 AAATCGACAATCAAACCGGTG 57.447 42.857 8.52 0.00 0.00 4.94
267 268 2.465860 ATCGACAATCAAACCGGTGA 57.534 45.000 8.52 1.36 0.00 4.02
268 269 2.242047 TCGACAATCAAACCGGTGAA 57.758 45.000 8.52 0.00 0.00 3.18
269 270 1.868498 TCGACAATCAAACCGGTGAAC 59.132 47.619 8.52 0.00 0.00 3.18
270 271 1.069500 CGACAATCAAACCGGTGAACC 60.069 52.381 8.52 0.00 0.00 3.62
280 281 2.422591 GGTGAACCGACGGTCCAA 59.577 61.111 22.00 6.05 33.12 3.53
281 282 1.957695 GGTGAACCGACGGTCCAAC 60.958 63.158 22.00 14.08 33.12 3.77
282 283 1.068585 GTGAACCGACGGTCCAACT 59.931 57.895 22.00 3.41 33.12 3.16
283 284 1.068417 TGAACCGACGGTCCAACTG 59.932 57.895 22.00 0.00 33.12 3.16
284 285 1.364901 GAACCGACGGTCCAACTGA 59.635 57.895 22.00 0.00 33.12 3.41
285 286 0.037605 GAACCGACGGTCCAACTGAT 60.038 55.000 22.00 0.73 33.12 2.90
286 287 1.203052 GAACCGACGGTCCAACTGATA 59.797 52.381 22.00 0.00 33.12 2.15
287 288 1.259609 ACCGACGGTCCAACTGATAA 58.740 50.000 15.37 0.00 0.00 1.75
288 289 1.619827 ACCGACGGTCCAACTGATAAA 59.380 47.619 15.37 0.00 0.00 1.40
289 290 2.037511 ACCGACGGTCCAACTGATAAAA 59.962 45.455 15.37 0.00 0.00 1.52
290 291 3.068560 CCGACGGTCCAACTGATAAAAA 58.931 45.455 5.48 0.00 0.00 1.94
291 292 3.120442 CCGACGGTCCAACTGATAAAAAC 60.120 47.826 5.48 0.00 0.00 2.43
292 293 3.120442 CGACGGTCCAACTGATAAAAACC 60.120 47.826 1.91 0.00 0.00 3.27
293 294 4.070009 GACGGTCCAACTGATAAAAACCT 58.930 43.478 0.00 0.00 0.00 3.50
294 295 3.818773 ACGGTCCAACTGATAAAAACCTG 59.181 43.478 0.00 0.00 0.00 4.00
295 296 4.069304 CGGTCCAACTGATAAAAACCTGA 58.931 43.478 0.00 0.00 0.00 3.86
296 297 4.517453 CGGTCCAACTGATAAAAACCTGAA 59.483 41.667 0.00 0.00 0.00 3.02
297 298 5.562113 CGGTCCAACTGATAAAAACCTGAAC 60.562 44.000 0.00 0.00 0.00 3.18
298 299 5.278808 GGTCCAACTGATAAAAACCTGAACC 60.279 44.000 0.00 0.00 0.00 3.62
299 300 4.517453 TCCAACTGATAAAAACCTGAACCG 59.483 41.667 0.00 0.00 0.00 4.44
300 301 4.517453 CCAACTGATAAAAACCTGAACCGA 59.483 41.667 0.00 0.00 0.00 4.69
301 302 5.183140 CCAACTGATAAAAACCTGAACCGAT 59.817 40.000 0.00 0.00 0.00 4.18
302 303 6.373216 CCAACTGATAAAAACCTGAACCGATA 59.627 38.462 0.00 0.00 0.00 2.92
303 304 7.414098 CCAACTGATAAAAACCTGAACCGATAG 60.414 40.741 0.00 0.00 0.00 2.08
304 305 6.708285 ACTGATAAAAACCTGAACCGATAGT 58.292 36.000 0.00 0.00 0.00 2.12
305 306 6.817140 ACTGATAAAAACCTGAACCGATAGTC 59.183 38.462 0.00 0.00 0.00 2.59
306 307 6.942976 TGATAAAAACCTGAACCGATAGTCT 58.057 36.000 0.00 0.00 0.00 3.24
307 308 7.391620 TGATAAAAACCTGAACCGATAGTCTT 58.608 34.615 0.00 0.00 0.00 3.01
308 309 5.941948 AAAAACCTGAACCGATAGTCTTG 57.058 39.130 0.00 0.00 0.00 3.02
309 310 2.674796 ACCTGAACCGATAGTCTTGC 57.325 50.000 0.00 0.00 0.00 4.01
310 311 1.207329 ACCTGAACCGATAGTCTTGCC 59.793 52.381 0.00 0.00 0.00 4.52
311 312 1.560923 CTGAACCGATAGTCTTGCCG 58.439 55.000 0.00 0.00 0.00 5.69
312 313 0.174845 TGAACCGATAGTCTTGCCGG 59.825 55.000 0.00 0.00 46.65 6.13
315 316 3.453559 CCGATAGTCTTGCCGGTTT 57.546 52.632 1.90 0.00 37.40 3.27
316 317 1.006832 CCGATAGTCTTGCCGGTTTG 58.993 55.000 1.90 0.00 37.40 2.93
317 318 1.404986 CCGATAGTCTTGCCGGTTTGA 60.405 52.381 1.90 0.00 37.40 2.69
318 319 2.550978 CGATAGTCTTGCCGGTTTGAT 58.449 47.619 1.90 0.00 0.00 2.57
319 320 2.936498 CGATAGTCTTGCCGGTTTGATT 59.064 45.455 1.90 0.00 0.00 2.57
320 321 4.116961 CGATAGTCTTGCCGGTTTGATTA 58.883 43.478 1.90 0.45 0.00 1.75
321 322 4.025979 CGATAGTCTTGCCGGTTTGATTAC 60.026 45.833 1.90 0.00 0.00 1.89
322 323 3.418684 AGTCTTGCCGGTTTGATTACT 57.581 42.857 1.90 0.00 0.00 2.24
323 324 3.074412 AGTCTTGCCGGTTTGATTACTG 58.926 45.455 1.90 0.00 0.00 2.74
324 325 2.161609 GTCTTGCCGGTTTGATTACTGG 59.838 50.000 1.90 0.00 45.65 4.00
325 326 2.159382 CTTGCCGGTTTGATTACTGGT 58.841 47.619 1.90 0.00 44.85 4.00
326 327 2.279935 TGCCGGTTTGATTACTGGTT 57.720 45.000 1.90 0.00 44.85 3.67
327 328 2.156098 TGCCGGTTTGATTACTGGTTC 58.844 47.619 1.90 0.00 44.85 3.62
328 329 1.129811 GCCGGTTTGATTACTGGTTCG 59.870 52.381 1.90 0.00 44.85 3.95
329 330 1.735571 CCGGTTTGATTACTGGTTCGG 59.264 52.381 0.00 0.00 39.33 4.30
330 331 2.419667 CGGTTTGATTACTGGTTCGGT 58.580 47.619 0.00 0.00 0.00 4.69
331 332 2.809696 CGGTTTGATTACTGGTTCGGTT 59.190 45.455 0.00 0.00 0.00 4.44
332 333 3.251487 CGGTTTGATTACTGGTTCGGTTT 59.749 43.478 0.00 0.00 0.00 3.27
333 334 4.261280 CGGTTTGATTACTGGTTCGGTTTT 60.261 41.667 0.00 0.00 0.00 2.43
334 335 5.593968 GGTTTGATTACTGGTTCGGTTTTT 58.406 37.500 0.00 0.00 0.00 1.94
362 363 0.468226 GGACAACACAGGACAGGACA 59.532 55.000 0.00 0.00 0.00 4.02
389 390 2.239400 TGGTCGCATCCAGGTAGATAG 58.761 52.381 0.00 0.00 33.19 2.08
431 440 2.415010 CACCTCGATCCTGAGCCG 59.585 66.667 0.00 0.00 34.56 5.52
432 441 2.121538 CACCTCGATCCTGAGCCGA 61.122 63.158 0.00 0.00 34.56 5.54
434 443 0.757188 ACCTCGATCCTGAGCCGAAT 60.757 55.000 0.00 0.00 34.56 3.34
437 446 1.005630 CGATCCTGAGCCGAATCCC 60.006 63.158 0.00 0.00 0.00 3.85
438 447 1.467678 CGATCCTGAGCCGAATCCCT 61.468 60.000 0.00 0.00 0.00 4.20
439 448 0.034616 GATCCTGAGCCGAATCCCTG 59.965 60.000 0.00 0.00 0.00 4.45
440 449 0.399091 ATCCTGAGCCGAATCCCTGA 60.399 55.000 0.00 0.00 0.00 3.86
455 467 1.524621 CTGATGATCCCACCCACGC 60.525 63.158 0.00 0.00 0.00 5.34
511 524 4.394712 CCACCTCACCCACTCGCC 62.395 72.222 0.00 0.00 0.00 5.54
512 525 3.625897 CACCTCACCCACTCGCCA 61.626 66.667 0.00 0.00 0.00 5.69
514 527 3.314331 CCTCACCCACTCGCCACT 61.314 66.667 0.00 0.00 0.00 4.00
515 528 1.982395 CCTCACCCACTCGCCACTA 60.982 63.158 0.00 0.00 0.00 2.74
557 570 0.615850 CGCCTCCTTTCTTCCTTCCT 59.384 55.000 0.00 0.00 0.00 3.36
558 571 1.003696 CGCCTCCTTTCTTCCTTCCTT 59.996 52.381 0.00 0.00 0.00 3.36
559 572 2.441410 GCCTCCTTTCTTCCTTCCTTG 58.559 52.381 0.00 0.00 0.00 3.61
560 573 2.881816 GCCTCCTTTCTTCCTTCCTTGG 60.882 54.545 0.00 0.00 0.00 3.61
647 660 1.005804 GCTTTCCGCTTTGCTTGCTC 61.006 55.000 0.00 0.00 35.14 4.26
660 673 0.254462 CTTGCTCCCTCTTTCTCCCC 59.746 60.000 0.00 0.00 0.00 4.81
661 674 0.178861 TTGCTCCCTCTTTCTCCCCT 60.179 55.000 0.00 0.00 0.00 4.79
692 708 8.038862 TCTCTCTTTCCAGCCTTATTATTGAT 57.961 34.615 0.00 0.00 0.00 2.57
693 709 8.153550 TCTCTCTTTCCAGCCTTATTATTGATC 58.846 37.037 0.00 0.00 0.00 2.92
694 710 7.227156 TCTCTTTCCAGCCTTATTATTGATCC 58.773 38.462 0.00 0.00 0.00 3.36
695 711 6.910191 TCTTTCCAGCCTTATTATTGATCCA 58.090 36.000 0.00 0.00 0.00 3.41
696 712 7.353525 TCTTTCCAGCCTTATTATTGATCCAA 58.646 34.615 0.00 0.00 0.00 3.53
698 714 6.514012 TCCAGCCTTATTATTGATCCAAGA 57.486 37.500 0.00 0.00 0.00 3.02
701 717 4.999950 AGCCTTATTATTGATCCAAGAGCG 59.000 41.667 0.00 0.00 0.00 5.03
702 718 4.378874 GCCTTATTATTGATCCAAGAGCGC 60.379 45.833 0.00 0.00 0.00 5.92
703 719 4.143030 CCTTATTATTGATCCAAGAGCGCG 60.143 45.833 0.00 0.00 0.00 6.86
704 720 0.937304 TTATTGATCCAAGAGCGCGC 59.063 50.000 26.66 26.66 0.00 6.86
705 721 1.215014 TATTGATCCAAGAGCGCGCG 61.215 55.000 28.44 28.44 0.00 6.86
737 753 3.844090 GAGCGAGAGAGCCCACCC 61.844 72.222 0.00 0.00 38.01 4.61
801 821 3.967332 TCAGCTCAACTCACATCATCA 57.033 42.857 0.00 0.00 0.00 3.07
802 822 4.482952 TCAGCTCAACTCACATCATCAT 57.517 40.909 0.00 0.00 0.00 2.45
803 823 4.439968 TCAGCTCAACTCACATCATCATC 58.560 43.478 0.00 0.00 0.00 2.92
804 824 3.560481 CAGCTCAACTCACATCATCATCC 59.440 47.826 0.00 0.00 0.00 3.51
805 825 2.543012 GCTCAACTCACATCATCATCCG 59.457 50.000 0.00 0.00 0.00 4.18
806 826 3.129109 CTCAACTCACATCATCATCCGG 58.871 50.000 0.00 0.00 0.00 5.14
807 827 2.501316 TCAACTCACATCATCATCCGGT 59.499 45.455 0.00 0.00 0.00 5.28
808 828 2.868583 CAACTCACATCATCATCCGGTC 59.131 50.000 0.00 0.00 0.00 4.79
809 829 1.414181 ACTCACATCATCATCCGGTCC 59.586 52.381 0.00 0.00 0.00 4.46
831 851 2.045242 TCGGAGCCGAGCACTAGT 60.045 61.111 7.66 0.00 44.01 2.57
832 852 2.103143 CGGAGCCGAGCACTAGTG 59.897 66.667 18.93 18.93 42.83 2.74
860 880 3.813166 CACACCACCACTAGTTAAACCAG 59.187 47.826 0.00 0.00 0.00 4.00
875 895 2.045131 CCAGCAGCCTTCTTCAGCC 61.045 63.158 0.00 0.00 0.00 4.85
892 912 3.646715 CGGTGGGAGGGAAGCCAA 61.647 66.667 0.00 0.00 0.00 4.52
893 913 2.035783 GGTGGGAGGGAAGCCAAC 59.964 66.667 0.00 0.00 0.00 3.77
902 922 1.315981 GGGAAGCCAACTAGCCAAGC 61.316 60.000 0.00 0.00 0.00 4.01
1263 1296 2.099756 CAGTCGAGCACATGTCCAGATA 59.900 50.000 0.00 0.00 0.00 1.98
1266 1299 4.122776 GTCGAGCACATGTCCAGATATTT 58.877 43.478 0.00 0.00 0.00 1.40
1275 1308 7.229306 GCACATGTCCAGATATTTGATTCCTTA 59.771 37.037 0.00 0.00 0.00 2.69
1473 1509 0.242825 TCACGTAGGTTCTTCAGCCG 59.757 55.000 0.00 0.00 0.00 5.52
1537 1573 0.606130 TTCCGTTTTTAGCCCGGGAC 60.606 55.000 29.31 16.50 41.98 4.46
1558 1594 4.430137 CAGAATGTGGGTGACAATGAAG 57.570 45.455 0.00 0.00 38.36 3.02
1578 1614 6.455647 TGAAGTGAACCTACTTACATCTGTG 58.544 40.000 0.00 0.00 40.78 3.66
1579 1615 5.407407 AGTGAACCTACTTACATCTGTGG 57.593 43.478 0.00 0.00 0.00 4.17
1580 1616 5.084519 AGTGAACCTACTTACATCTGTGGA 58.915 41.667 0.00 0.00 0.00 4.02
1620 1656 2.009774 GCTCTCAACCGTGCAACATAT 58.990 47.619 0.00 0.00 35.74 1.78
1621 1657 3.194861 GCTCTCAACCGTGCAACATATA 58.805 45.455 0.00 0.00 35.74 0.86
1622 1658 3.809832 GCTCTCAACCGTGCAACATATAT 59.190 43.478 0.00 0.00 35.74 0.86
1624 1660 5.639506 GCTCTCAACCGTGCAACATATATAT 59.360 40.000 0.00 0.00 35.74 0.86
1625 1661 6.811665 GCTCTCAACCGTGCAACATATATATA 59.188 38.462 0.00 0.00 35.74 0.86
1626 1662 7.009631 GCTCTCAACCGTGCAACATATATATAG 59.990 40.741 0.00 0.00 35.74 1.31
1627 1663 7.320399 TCTCAACCGTGCAACATATATATAGG 58.680 38.462 2.88 2.88 35.74 2.57
1628 1664 6.403049 TCAACCGTGCAACATATATATAGGG 58.597 40.000 9.10 1.73 35.74 3.53
1632 1671 6.877322 ACCGTGCAACATATATATAGGGAAAC 59.123 38.462 9.10 1.83 35.74 2.78
1741 1780 1.597663 CCGACCTGACACAGTTTGTTC 59.402 52.381 0.00 0.00 39.17 3.18
1762 1801 4.836825 TCTCCAAGTCTAGCCATTTGAAG 58.163 43.478 0.00 0.00 0.00 3.02
1764 1803 4.579869 TCCAAGTCTAGCCATTTGAAGTC 58.420 43.478 0.00 0.00 0.00 3.01
1765 1804 3.691609 CCAAGTCTAGCCATTTGAAGTCC 59.308 47.826 0.00 0.00 0.00 3.85
1766 1805 3.252974 AGTCTAGCCATTTGAAGTCCG 57.747 47.619 0.00 0.00 0.00 4.79
1767 1806 1.666189 GTCTAGCCATTTGAAGTCCGC 59.334 52.381 0.00 0.00 0.00 5.54
1806 1854 6.655062 TCTTCACAAGTTTATTTACTGTGCG 58.345 36.000 0.00 0.00 32.30 5.34
1837 1888 5.982890 ACTGCATTTTGCCAACTATACTT 57.017 34.783 0.00 0.00 44.23 2.24
1839 1890 7.088589 ACTGCATTTTGCCAACTATACTTAG 57.911 36.000 0.00 0.00 44.23 2.18
1840 1891 5.890334 TGCATTTTGCCAACTATACTTAGC 58.110 37.500 0.00 0.00 44.23 3.09
1841 1892 5.417266 TGCATTTTGCCAACTATACTTAGCA 59.583 36.000 0.00 0.00 44.23 3.49
1843 1894 7.284261 TGCATTTTGCCAACTATACTTAGCATA 59.716 33.333 0.00 0.00 44.23 3.14
1844 1895 7.591426 GCATTTTGCCAACTATACTTAGCATAC 59.409 37.037 0.00 0.00 37.42 2.39
1845 1896 7.562454 TTTTGCCAACTATACTTAGCATACC 57.438 36.000 0.00 0.00 0.00 2.73
1846 1897 5.223449 TGCCAACTATACTTAGCATACCC 57.777 43.478 0.00 0.00 0.00 3.69
1847 1898 4.905456 TGCCAACTATACTTAGCATACCCT 59.095 41.667 0.00 0.00 0.00 4.34
1849 1900 5.011738 GCCAACTATACTTAGCATACCCTCA 59.988 44.000 0.00 0.00 0.00 3.86
1881 1940 0.725117 ACTTAGCATGCCGTTAACGC 59.275 50.000 22.43 17.20 38.18 4.84
1884 1943 0.390603 TAGCATGCCGTTAACGCTGT 60.391 50.000 22.43 6.93 38.18 4.40
1886 1945 1.134487 CATGCCGTTAACGCTGTGG 59.866 57.895 22.43 9.50 38.18 4.17
2023 2082 1.000019 CCTCTACAGGACCGACCCA 60.000 63.158 0.00 0.00 43.65 4.51
2101 2160 2.107141 GACATCCCCTCCTTCGCG 59.893 66.667 0.00 0.00 0.00 5.87
2986 3045 1.000171 CCCTTGGCTCTTGTTTGCTTC 60.000 52.381 0.00 0.00 0.00 3.86
3178 3237 5.220931 GCTTGTTTCTTGTTCATGTCTCTGT 60.221 40.000 0.00 0.00 0.00 3.41
3197 3256 4.349636 TCTGTTGGTCTGACCTTCCATTTA 59.650 41.667 26.03 1.75 39.58 1.40
3213 3272 5.128205 TCCATTTATGTCTGCAATCTCTGG 58.872 41.667 0.00 0.00 0.00 3.86
3215 3274 5.238868 CCATTTATGTCTGCAATCTCTGGAG 59.761 44.000 0.00 0.00 44.59 3.86
3226 3285 2.890808 TCTCTGGAGTGTGTGTTGAC 57.109 50.000 0.00 0.00 0.00 3.18
3245 3304 2.193306 CGCAAGCAACTTGTGTTCTT 57.807 45.000 11.72 0.00 44.10 2.52
3248 3307 3.111098 GCAAGCAACTTGTGTTCTTCTG 58.889 45.455 8.95 0.00 42.77 3.02
3249 3308 3.428045 GCAAGCAACTTGTGTTCTTCTGT 60.428 43.478 8.95 0.00 42.77 3.41
3272 3332 7.436933 TGTTATGTGGTTTTGCATTGTCAATA 58.563 30.769 0.00 0.00 0.00 1.90
3301 3361 4.690748 ACTCAGATACGGTGTGAACAAATG 59.309 41.667 0.00 0.00 28.55 2.32
3325 3589 0.394938 TGTTGGCGTATGGACACACT 59.605 50.000 0.00 0.00 28.72 3.55
3377 3643 2.366590 AGATGATCAGCCGAAGCATACA 59.633 45.455 7.49 0.00 43.56 2.29
3378 3644 2.916702 TGATCAGCCGAAGCATACAT 57.083 45.000 0.00 0.00 43.56 2.29
3408 3674 6.814076 TTTGTTGGCGTACAAATAACAAAG 57.186 33.333 16.69 0.00 42.71 2.77
3438 3705 3.735746 GCAAGTGCAAGGAAAACATACAC 59.264 43.478 0.00 0.00 41.59 2.90
3439 3706 4.499696 GCAAGTGCAAGGAAAACATACACT 60.500 41.667 0.00 0.00 41.59 3.55
3440 3707 4.836125 AGTGCAAGGAAAACATACACTG 57.164 40.909 0.00 0.00 35.68 3.66
3441 3708 3.569701 AGTGCAAGGAAAACATACACTGG 59.430 43.478 0.00 0.00 35.68 4.00
3442 3709 2.890311 TGCAAGGAAAACATACACTGGG 59.110 45.455 0.00 0.00 0.00 4.45
3443 3710 2.352715 GCAAGGAAAACATACACTGGGC 60.353 50.000 0.00 0.00 0.00 5.36
3444 3711 2.890311 CAAGGAAAACATACACTGGGCA 59.110 45.455 0.00 0.00 0.00 5.36
3445 3712 3.237268 AGGAAAACATACACTGGGCAA 57.763 42.857 0.00 0.00 0.00 4.52
3446 3713 3.778265 AGGAAAACATACACTGGGCAAT 58.222 40.909 0.00 0.00 0.00 3.56
3451 3740 1.545582 ACATACACTGGGCAATGCAAC 59.454 47.619 7.79 0.00 0.00 4.17
3473 3762 2.694628 AGAAACAACAATCTGCAGGCAA 59.305 40.909 15.13 0.00 0.00 4.52
3477 3766 2.168106 ACAACAATCTGCAGGCAAAACA 59.832 40.909 15.13 0.00 0.00 2.83
3478 3767 3.196463 CAACAATCTGCAGGCAAAACAA 58.804 40.909 15.13 0.00 0.00 2.83
3479 3768 3.756933 ACAATCTGCAGGCAAAACAAT 57.243 38.095 15.13 0.00 0.00 2.71
3480 3769 3.395639 ACAATCTGCAGGCAAAACAATG 58.604 40.909 15.13 0.00 0.00 2.82
3531 3820 2.734079 GAGCTACAACAACTCTCAGCAC 59.266 50.000 0.00 0.00 0.00 4.40
3547 3836 3.005554 CAGCACACCACCATCTTAGAAG 58.994 50.000 0.00 0.00 0.00 2.85
3597 3886 1.615883 ACAAACAAACAGCCACACACA 59.384 42.857 0.00 0.00 0.00 3.72
3598 3887 1.991965 CAAACAAACAGCCACACACAC 59.008 47.619 0.00 0.00 0.00 3.82
3599 3888 1.252175 AACAAACAGCCACACACACA 58.748 45.000 0.00 0.00 0.00 3.72
3600 3889 0.525761 ACAAACAGCCACACACACAC 59.474 50.000 0.00 0.00 0.00 3.82
3601 3890 0.525311 CAAACAGCCACACACACACA 59.475 50.000 0.00 0.00 0.00 3.72
3602 3891 0.525761 AAACAGCCACACACACACAC 59.474 50.000 0.00 0.00 0.00 3.82
3677 3966 2.047179 GGTGAACTGCCCGTCCTC 60.047 66.667 0.00 0.00 0.00 3.71
3683 3972 0.602905 AACTGCCCGTCCTCGAAAAG 60.603 55.000 0.00 0.00 39.71 2.27
3974 4263 3.308595 TGTTGTCGATTGATATTGTCGGC 59.691 43.478 0.00 3.83 40.14 5.54
3978 4267 0.859232 GATTGATATTGTCGGCGCGT 59.141 50.000 8.43 0.00 0.00 6.01
3997 4286 2.677037 CGTTGCCCTACAGGTAAAGAGG 60.677 54.545 0.00 0.00 42.48 3.69
3998 4287 2.305052 GTTGCCCTACAGGTAAAGAGGT 59.695 50.000 0.00 0.00 42.48 3.85
3999 4288 1.906574 TGCCCTACAGGTAAAGAGGTG 59.093 52.381 0.00 0.00 38.26 4.00
4000 4289 2.185387 GCCCTACAGGTAAAGAGGTGA 58.815 52.381 0.00 0.00 38.26 4.02
4001 4290 2.772515 GCCCTACAGGTAAAGAGGTGAT 59.227 50.000 0.00 0.00 38.26 3.06
4007 4296 5.091261 ACAGGTAAAGAGGTGATGATGAC 57.909 43.478 0.00 0.00 0.00 3.06
4010 4299 5.814705 CAGGTAAAGAGGTGATGATGACTTC 59.185 44.000 0.00 0.00 0.00 3.01
4014 4303 4.734398 AGAGGTGATGATGACTTCAGTC 57.266 45.455 0.00 0.00 44.97 3.51
4022 4311 2.029020 TGATGACTTCAGTCCTTCACGG 60.029 50.000 4.48 0.00 44.15 4.94
4049 4338 3.638160 AGAAGCATGCCAAGTTCAAAAGA 59.362 39.130 15.66 0.00 0.00 2.52
4058 4347 4.746611 GCCAAGTTCAAAAGATTTGACCAG 59.253 41.667 5.09 0.00 0.00 4.00
4074 4363 5.590530 TGACCAGCATACAAACAAAAGTT 57.409 34.783 0.00 0.00 0.00 2.66
4170 4459 2.878406 GACAACCTCAAAAGCTGCTACA 59.122 45.455 0.90 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.506067 GGAATCAACATCAAACCTTCGGT 59.494 43.478 0.00 0.00 37.65 4.69
3 4 3.505680 TGGAATCAACATCAAACCTTCGG 59.494 43.478 0.00 0.00 0.00 4.30
4 5 4.455533 TCTGGAATCAACATCAAACCTTCG 59.544 41.667 0.00 0.00 0.00 3.79
5 6 5.964958 TCTGGAATCAACATCAAACCTTC 57.035 39.130 0.00 0.00 0.00 3.46
6 7 6.729690 TTTCTGGAATCAACATCAAACCTT 57.270 33.333 0.00 0.00 0.00 3.50
7 8 6.550854 TCTTTTCTGGAATCAACATCAAACCT 59.449 34.615 0.00 0.00 0.00 3.50
8 9 6.642540 GTCTTTTCTGGAATCAACATCAAACC 59.357 38.462 0.00 0.00 0.00 3.27
9 10 6.642540 GGTCTTTTCTGGAATCAACATCAAAC 59.357 38.462 0.00 0.00 0.00 2.93
10 11 6.239289 GGGTCTTTTCTGGAATCAACATCAAA 60.239 38.462 0.00 0.00 0.00 2.69
11 12 5.243730 GGGTCTTTTCTGGAATCAACATCAA 59.756 40.000 0.00 0.00 0.00 2.57
12 13 4.766891 GGGTCTTTTCTGGAATCAACATCA 59.233 41.667 0.00 0.00 0.00 3.07
13 14 5.012893 AGGGTCTTTTCTGGAATCAACATC 58.987 41.667 0.00 0.00 0.00 3.06
14 15 4.768968 CAGGGTCTTTTCTGGAATCAACAT 59.231 41.667 0.00 0.00 0.00 2.71
15 16 4.141274 TCAGGGTCTTTTCTGGAATCAACA 60.141 41.667 0.00 0.00 0.00 3.33
16 17 4.216472 GTCAGGGTCTTTTCTGGAATCAAC 59.784 45.833 0.00 0.00 0.00 3.18
17 18 4.104738 AGTCAGGGTCTTTTCTGGAATCAA 59.895 41.667 0.00 0.00 0.00 2.57
18 19 3.652869 AGTCAGGGTCTTTTCTGGAATCA 59.347 43.478 0.00 0.00 0.00 2.57
19 20 4.293662 AGTCAGGGTCTTTTCTGGAATC 57.706 45.455 0.00 0.00 0.00 2.52
20 21 4.141158 ACAAGTCAGGGTCTTTTCTGGAAT 60.141 41.667 0.00 0.00 0.00 3.01
21 22 3.202151 ACAAGTCAGGGTCTTTTCTGGAA 59.798 43.478 0.00 0.00 0.00 3.53
22 23 2.777692 ACAAGTCAGGGTCTTTTCTGGA 59.222 45.455 0.00 0.00 0.00 3.86
23 24 3.214696 ACAAGTCAGGGTCTTTTCTGG 57.785 47.619 0.00 0.00 0.00 3.86
24 25 5.582689 AAAACAAGTCAGGGTCTTTTCTG 57.417 39.130 0.00 0.00 0.00 3.02
25 26 7.684428 GCATAAAAACAAGTCAGGGTCTTTTCT 60.684 37.037 0.00 0.00 0.00 2.52
26 27 6.420903 GCATAAAAACAAGTCAGGGTCTTTTC 59.579 38.462 0.00 0.00 0.00 2.29
27 28 6.280643 GCATAAAAACAAGTCAGGGTCTTTT 58.719 36.000 0.00 0.00 0.00 2.27
28 29 5.507315 CGCATAAAAACAAGTCAGGGTCTTT 60.507 40.000 0.00 0.00 0.00 2.52
29 30 4.023193 CGCATAAAAACAAGTCAGGGTCTT 60.023 41.667 0.00 0.00 0.00 3.01
30 31 3.502211 CGCATAAAAACAAGTCAGGGTCT 59.498 43.478 0.00 0.00 0.00 3.85
31 32 3.252458 ACGCATAAAAACAAGTCAGGGTC 59.748 43.478 0.00 0.00 0.00 4.46
32 33 3.219281 ACGCATAAAAACAAGTCAGGGT 58.781 40.909 0.00 0.00 0.00 4.34
33 34 3.915437 ACGCATAAAAACAAGTCAGGG 57.085 42.857 0.00 0.00 0.00 4.45
34 35 5.351233 TGTACGCATAAAAACAAGTCAGG 57.649 39.130 0.00 0.00 0.00 3.86
35 36 5.339611 GCTTGTACGCATAAAAACAAGTCAG 59.660 40.000 13.69 0.00 46.68 3.51
36 37 5.008217 AGCTTGTACGCATAAAAACAAGTCA 59.992 36.000 13.69 0.00 46.68 3.41
37 38 5.339611 CAGCTTGTACGCATAAAAACAAGTC 59.660 40.000 13.69 7.71 46.68 3.01
38 39 5.008217 TCAGCTTGTACGCATAAAAACAAGT 59.992 36.000 13.69 1.33 46.68 3.16
40 41 5.425577 TCAGCTTGTACGCATAAAAACAA 57.574 34.783 0.00 0.00 0.00 2.83
41 42 5.389778 CATCAGCTTGTACGCATAAAAACA 58.610 37.500 0.00 0.00 0.00 2.83
42 43 4.793216 CCATCAGCTTGTACGCATAAAAAC 59.207 41.667 0.00 0.00 0.00 2.43
43 44 4.457603 ACCATCAGCTTGTACGCATAAAAA 59.542 37.500 0.00 0.00 0.00 1.94
44 45 4.006989 ACCATCAGCTTGTACGCATAAAA 58.993 39.130 0.00 0.00 0.00 1.52
45 46 3.605634 ACCATCAGCTTGTACGCATAAA 58.394 40.909 0.00 0.00 0.00 1.40
46 47 3.260475 ACCATCAGCTTGTACGCATAA 57.740 42.857 0.00 0.00 0.00 1.90
47 48 2.979814 ACCATCAGCTTGTACGCATA 57.020 45.000 0.00 0.00 0.00 3.14
48 49 2.430694 TCTACCATCAGCTTGTACGCAT 59.569 45.455 0.00 0.00 0.00 4.73
49 50 1.822371 TCTACCATCAGCTTGTACGCA 59.178 47.619 0.00 0.00 0.00 5.24
50 51 2.579207 TCTACCATCAGCTTGTACGC 57.421 50.000 0.00 0.00 0.00 4.42
51 52 3.731216 CGATTCTACCATCAGCTTGTACG 59.269 47.826 0.00 0.00 0.00 3.67
52 53 4.051922 CCGATTCTACCATCAGCTTGTAC 58.948 47.826 0.00 0.00 0.00 2.90
53 54 3.704566 ACCGATTCTACCATCAGCTTGTA 59.295 43.478 0.00 0.00 0.00 2.41
54 55 2.501723 ACCGATTCTACCATCAGCTTGT 59.498 45.455 0.00 0.00 0.00 3.16
55 56 3.185246 ACCGATTCTACCATCAGCTTG 57.815 47.619 0.00 0.00 0.00 4.01
56 57 5.353394 TTTACCGATTCTACCATCAGCTT 57.647 39.130 0.00 0.00 0.00 3.74
57 58 4.202264 CCTTTACCGATTCTACCATCAGCT 60.202 45.833 0.00 0.00 0.00 4.24
58 59 4.058817 CCTTTACCGATTCTACCATCAGC 58.941 47.826 0.00 0.00 0.00 4.26
59 60 5.531122 TCCTTTACCGATTCTACCATCAG 57.469 43.478 0.00 0.00 0.00 2.90
60 61 5.943349 TTCCTTTACCGATTCTACCATCA 57.057 39.130 0.00 0.00 0.00 3.07
61 62 7.619964 TTTTTCCTTTACCGATTCTACCATC 57.380 36.000 0.00 0.00 0.00 3.51
83 84 5.046448 ACCGAAACCCTACCAAAAAGTTTTT 60.046 36.000 7.79 7.79 31.14 1.94
84 85 4.467082 ACCGAAACCCTACCAAAAAGTTTT 59.533 37.500 0.00 0.00 31.14 2.43
85 86 4.025360 ACCGAAACCCTACCAAAAAGTTT 58.975 39.130 0.00 0.00 33.55 2.66
86 87 3.633525 GACCGAAACCCTACCAAAAAGTT 59.366 43.478 0.00 0.00 0.00 2.66
87 88 3.117776 AGACCGAAACCCTACCAAAAAGT 60.118 43.478 0.00 0.00 0.00 2.66
88 89 3.483421 AGACCGAAACCCTACCAAAAAG 58.517 45.455 0.00 0.00 0.00 2.27
89 90 3.581265 AGACCGAAACCCTACCAAAAA 57.419 42.857 0.00 0.00 0.00 1.94
90 91 4.914177 ATAGACCGAAACCCTACCAAAA 57.086 40.909 0.00 0.00 0.00 2.44
91 92 4.566070 CCAATAGACCGAAACCCTACCAAA 60.566 45.833 0.00 0.00 0.00 3.28
92 93 3.054948 CCAATAGACCGAAACCCTACCAA 60.055 47.826 0.00 0.00 0.00 3.67
93 94 2.502538 CCAATAGACCGAAACCCTACCA 59.497 50.000 0.00 0.00 0.00 3.25
94 95 2.158856 CCCAATAGACCGAAACCCTACC 60.159 54.545 0.00 0.00 0.00 3.18
95 96 2.767960 TCCCAATAGACCGAAACCCTAC 59.232 50.000 0.00 0.00 0.00 3.18
96 97 3.036091 CTCCCAATAGACCGAAACCCTA 58.964 50.000 0.00 0.00 0.00 3.53
97 98 1.838077 CTCCCAATAGACCGAAACCCT 59.162 52.381 0.00 0.00 0.00 4.34
98 99 1.746171 GCTCCCAATAGACCGAAACCC 60.746 57.143 0.00 0.00 0.00 4.11
99 100 1.209747 AGCTCCCAATAGACCGAAACC 59.790 52.381 0.00 0.00 0.00 3.27
100 101 2.693267 AGCTCCCAATAGACCGAAAC 57.307 50.000 0.00 0.00 0.00 2.78
101 102 3.713826 AAAGCTCCCAATAGACCGAAA 57.286 42.857 0.00 0.00 0.00 3.46
102 103 4.654262 AGATAAAGCTCCCAATAGACCGAA 59.346 41.667 0.00 0.00 0.00 4.30
103 104 4.223953 AGATAAAGCTCCCAATAGACCGA 58.776 43.478 0.00 0.00 0.00 4.69
104 105 4.282195 AGAGATAAAGCTCCCAATAGACCG 59.718 45.833 0.00 0.00 35.49 4.79
105 106 5.565834 CGAGAGATAAAGCTCCCAATAGACC 60.566 48.000 0.00 0.00 35.49 3.85
106 107 5.241949 TCGAGAGATAAAGCTCCCAATAGAC 59.758 44.000 0.00 0.00 35.49 2.59
107 108 5.386060 TCGAGAGATAAAGCTCCCAATAGA 58.614 41.667 0.00 0.00 35.49 1.98
108 109 5.713792 TCGAGAGATAAAGCTCCCAATAG 57.286 43.478 0.00 0.00 35.49 1.73
236 237 9.626045 GGTTTGATTGTCGATTTTTCTAAGAAT 57.374 29.630 0.00 0.00 0.00 2.40
237 238 7.801315 CGGTTTGATTGTCGATTTTTCTAAGAA 59.199 33.333 0.00 0.00 0.00 2.52
238 239 7.295201 CGGTTTGATTGTCGATTTTTCTAAGA 58.705 34.615 0.00 0.00 0.00 2.10
239 240 6.523201 CCGGTTTGATTGTCGATTTTTCTAAG 59.477 38.462 0.00 0.00 0.00 2.18
240 241 6.016943 ACCGGTTTGATTGTCGATTTTTCTAA 60.017 34.615 0.00 0.00 0.00 2.10
241 242 5.470777 ACCGGTTTGATTGTCGATTTTTCTA 59.529 36.000 0.00 0.00 0.00 2.10
242 243 4.277423 ACCGGTTTGATTGTCGATTTTTCT 59.723 37.500 0.00 0.00 0.00 2.52
243 244 4.381566 CACCGGTTTGATTGTCGATTTTTC 59.618 41.667 2.97 0.00 0.00 2.29
244 245 4.036971 TCACCGGTTTGATTGTCGATTTTT 59.963 37.500 2.97 0.00 0.00 1.94
245 246 3.566322 TCACCGGTTTGATTGTCGATTTT 59.434 39.130 2.97 0.00 0.00 1.82
246 247 3.142951 TCACCGGTTTGATTGTCGATTT 58.857 40.909 2.97 0.00 0.00 2.17
247 248 2.773487 TCACCGGTTTGATTGTCGATT 58.227 42.857 2.97 0.00 0.00 3.34
248 249 2.465860 TCACCGGTTTGATTGTCGAT 57.534 45.000 2.97 0.00 0.00 3.59
249 250 1.868498 GTTCACCGGTTTGATTGTCGA 59.132 47.619 2.97 0.00 0.00 4.20
250 251 1.069500 GGTTCACCGGTTTGATTGTCG 60.069 52.381 2.97 0.00 0.00 4.35
251 252 2.699251 GGTTCACCGGTTTGATTGTC 57.301 50.000 2.97 0.00 0.00 3.18
263 264 1.957695 GTTGGACCGTCGGTTCACC 60.958 63.158 25.39 15.20 41.52 4.02
264 265 1.068585 AGTTGGACCGTCGGTTCAC 59.931 57.895 25.39 18.73 41.52 3.18
265 266 1.068417 CAGTTGGACCGTCGGTTCA 59.932 57.895 21.92 21.92 39.83 3.18
266 267 0.037605 ATCAGTTGGACCGTCGGTTC 60.038 55.000 19.95 18.11 35.25 3.62
267 268 1.259609 TATCAGTTGGACCGTCGGTT 58.740 50.000 19.95 1.93 35.25 4.44
268 269 1.259609 TTATCAGTTGGACCGTCGGT 58.740 50.000 18.94 18.94 39.44 4.69
269 270 2.373540 TTTATCAGTTGGACCGTCGG 57.626 50.000 10.48 10.48 0.00 4.79
270 271 3.120442 GGTTTTTATCAGTTGGACCGTCG 60.120 47.826 0.00 0.00 0.00 5.12
271 272 4.070009 AGGTTTTTATCAGTTGGACCGTC 58.930 43.478 0.00 0.00 0.00 4.79
272 273 3.818773 CAGGTTTTTATCAGTTGGACCGT 59.181 43.478 0.00 0.00 0.00 4.83
273 274 4.069304 TCAGGTTTTTATCAGTTGGACCG 58.931 43.478 0.00 0.00 0.00 4.79
274 275 5.278808 GGTTCAGGTTTTTATCAGTTGGACC 60.279 44.000 0.00 0.00 0.00 4.46
275 276 5.562113 CGGTTCAGGTTTTTATCAGTTGGAC 60.562 44.000 0.00 0.00 0.00 4.02
276 277 4.517453 CGGTTCAGGTTTTTATCAGTTGGA 59.483 41.667 0.00 0.00 0.00 3.53
277 278 4.517453 TCGGTTCAGGTTTTTATCAGTTGG 59.483 41.667 0.00 0.00 0.00 3.77
278 279 5.682943 TCGGTTCAGGTTTTTATCAGTTG 57.317 39.130 0.00 0.00 0.00 3.16
279 280 7.166167 ACTATCGGTTCAGGTTTTTATCAGTT 58.834 34.615 0.00 0.00 0.00 3.16
280 281 6.708285 ACTATCGGTTCAGGTTTTTATCAGT 58.292 36.000 0.00 0.00 0.00 3.41
281 282 7.042335 AGACTATCGGTTCAGGTTTTTATCAG 58.958 38.462 0.00 0.00 0.00 2.90
282 283 6.942976 AGACTATCGGTTCAGGTTTTTATCA 58.057 36.000 0.00 0.00 0.00 2.15
283 284 7.676572 GCAAGACTATCGGTTCAGGTTTTTATC 60.677 40.741 0.00 0.00 0.00 1.75
284 285 6.093633 GCAAGACTATCGGTTCAGGTTTTTAT 59.906 38.462 0.00 0.00 0.00 1.40
285 286 5.410439 GCAAGACTATCGGTTCAGGTTTTTA 59.590 40.000 0.00 0.00 0.00 1.52
286 287 4.215613 GCAAGACTATCGGTTCAGGTTTTT 59.784 41.667 0.00 0.00 0.00 1.94
287 288 3.751698 GCAAGACTATCGGTTCAGGTTTT 59.248 43.478 0.00 0.00 0.00 2.43
288 289 3.335579 GCAAGACTATCGGTTCAGGTTT 58.664 45.455 0.00 0.00 0.00 3.27
289 290 2.354805 GGCAAGACTATCGGTTCAGGTT 60.355 50.000 0.00 0.00 0.00 3.50
290 291 1.207329 GGCAAGACTATCGGTTCAGGT 59.793 52.381 0.00 0.00 0.00 4.00
291 292 1.802880 CGGCAAGACTATCGGTTCAGG 60.803 57.143 0.00 0.00 0.00 3.86
292 293 1.560923 CGGCAAGACTATCGGTTCAG 58.439 55.000 0.00 0.00 0.00 3.02
293 294 0.174845 CCGGCAAGACTATCGGTTCA 59.825 55.000 0.00 0.00 37.92 3.18
294 295 2.973420 CCGGCAAGACTATCGGTTC 58.027 57.895 0.00 0.00 37.92 3.62
297 298 1.006832 CAAACCGGCAAGACTATCGG 58.993 55.000 0.00 8.81 46.95 4.18
298 299 2.004583 TCAAACCGGCAAGACTATCG 57.995 50.000 0.00 0.00 0.00 2.92
299 300 5.006746 CAGTAATCAAACCGGCAAGACTATC 59.993 44.000 0.00 0.00 0.00 2.08
300 301 4.876107 CAGTAATCAAACCGGCAAGACTAT 59.124 41.667 0.00 0.00 0.00 2.12
301 302 4.250464 CAGTAATCAAACCGGCAAGACTA 58.750 43.478 0.00 0.00 0.00 2.59
302 303 3.074412 CAGTAATCAAACCGGCAAGACT 58.926 45.455 0.00 0.00 0.00 3.24
303 304 2.161609 CCAGTAATCAAACCGGCAAGAC 59.838 50.000 0.00 0.00 0.00 3.01
304 305 2.224670 ACCAGTAATCAAACCGGCAAGA 60.225 45.455 0.00 0.00 0.00 3.02
305 306 2.159382 ACCAGTAATCAAACCGGCAAG 58.841 47.619 0.00 0.00 0.00 4.01
306 307 2.279935 ACCAGTAATCAAACCGGCAA 57.720 45.000 0.00 0.00 0.00 4.52
307 308 2.156098 GAACCAGTAATCAAACCGGCA 58.844 47.619 0.00 0.00 0.00 5.69
308 309 1.129811 CGAACCAGTAATCAAACCGGC 59.870 52.381 0.00 0.00 0.00 6.13
309 310 1.735571 CCGAACCAGTAATCAAACCGG 59.264 52.381 0.00 0.00 0.00 5.28
310 311 2.419667 ACCGAACCAGTAATCAAACCG 58.580 47.619 0.00 0.00 0.00 4.44
311 312 4.841443 AAACCGAACCAGTAATCAAACC 57.159 40.909 0.00 0.00 0.00 3.27
331 332 7.339721 TGTCCTGTGTTGTCCATAGTTTAAAAA 59.660 33.333 0.00 0.00 30.74 1.94
332 333 6.829298 TGTCCTGTGTTGTCCATAGTTTAAAA 59.171 34.615 0.00 0.00 30.74 1.52
333 334 6.358178 TGTCCTGTGTTGTCCATAGTTTAAA 58.642 36.000 0.00 0.00 30.74 1.52
334 335 5.931294 TGTCCTGTGTTGTCCATAGTTTAA 58.069 37.500 0.00 0.00 30.74 1.52
335 336 5.512404 CCTGTCCTGTGTTGTCCATAGTTTA 60.512 44.000 0.00 0.00 30.74 2.01
336 337 4.389374 CTGTCCTGTGTTGTCCATAGTTT 58.611 43.478 0.00 0.00 30.74 2.66
337 338 3.244561 CCTGTCCTGTGTTGTCCATAGTT 60.245 47.826 0.00 0.00 30.74 2.24
338 339 2.303022 CCTGTCCTGTGTTGTCCATAGT 59.697 50.000 0.00 0.00 30.74 2.12
339 340 2.567169 TCCTGTCCTGTGTTGTCCATAG 59.433 50.000 0.00 0.00 32.41 2.23
340 341 2.301870 GTCCTGTCCTGTGTTGTCCATA 59.698 50.000 0.00 0.00 0.00 2.74
341 342 1.072331 GTCCTGTCCTGTGTTGTCCAT 59.928 52.381 0.00 0.00 0.00 3.41
342 343 0.468226 GTCCTGTCCTGTGTTGTCCA 59.532 55.000 0.00 0.00 0.00 4.02
343 344 0.468226 TGTCCTGTCCTGTGTTGTCC 59.532 55.000 0.00 0.00 0.00 4.02
344 345 2.213499 CTTGTCCTGTCCTGTGTTGTC 58.787 52.381 0.00 0.00 0.00 3.18
345 346 1.134098 CCTTGTCCTGTCCTGTGTTGT 60.134 52.381 0.00 0.00 0.00 3.32
346 347 1.140852 TCCTTGTCCTGTCCTGTGTTG 59.859 52.381 0.00 0.00 0.00 3.33
347 348 1.417890 CTCCTTGTCCTGTCCTGTGTT 59.582 52.381 0.00 0.00 0.00 3.32
351 352 1.271054 CCAACTCCTTGTCCTGTCCTG 60.271 57.143 0.00 0.00 0.00 3.86
362 363 0.036010 CTGGATGCGACCAACTCCTT 60.036 55.000 3.41 0.00 39.59 3.36
389 390 1.808390 GTGCCCGTACGTGGTGATC 60.808 63.158 15.21 3.32 0.00 2.92
431 440 1.074566 GGGTGGGATCATCAGGGATTC 59.925 57.143 0.00 0.00 0.00 2.52
432 441 1.152649 GGGTGGGATCATCAGGGATT 58.847 55.000 0.00 0.00 0.00 3.01
434 443 0.988145 GTGGGTGGGATCATCAGGGA 60.988 60.000 0.00 0.00 0.00 4.20
437 446 1.524621 GCGTGGGTGGGATCATCAG 60.525 63.158 0.00 0.00 0.00 2.90
438 447 2.256072 CTGCGTGGGTGGGATCATCA 62.256 60.000 0.00 0.00 0.00 3.07
439 448 1.524621 CTGCGTGGGTGGGATCATC 60.525 63.158 0.00 0.00 0.00 2.92
440 449 2.591753 CTGCGTGGGTGGGATCAT 59.408 61.111 0.00 0.00 0.00 2.45
511 524 3.347216 CCTGATTTGAACCACCCTAGTG 58.653 50.000 0.00 0.00 44.12 2.74
512 525 2.290960 GCCTGATTTGAACCACCCTAGT 60.291 50.000 0.00 0.00 0.00 2.57
514 527 1.339631 CGCCTGATTTGAACCACCCTA 60.340 52.381 0.00 0.00 0.00 3.53
515 528 0.609131 CGCCTGATTTGAACCACCCT 60.609 55.000 0.00 0.00 0.00 4.34
520 533 1.803289 GAGCCGCCTGATTTGAACC 59.197 57.895 0.00 0.00 0.00 3.62
540 553 2.881816 GCCAAGGAAGGAAGAAAGGAGG 60.882 54.545 0.00 0.00 0.00 4.30
547 560 0.836400 AGACGGCCAAGGAAGGAAGA 60.836 55.000 2.24 0.00 0.00 2.87
557 570 0.889186 GAAAGCTTCCAGACGGCCAA 60.889 55.000 2.24 0.00 0.00 4.52
558 571 1.302511 GAAAGCTTCCAGACGGCCA 60.303 57.895 2.24 0.00 0.00 5.36
559 572 3.579685 GAAAGCTTCCAGACGGCC 58.420 61.111 0.00 0.00 0.00 6.13
647 660 0.692756 GAGGGAGGGGAGAAAGAGGG 60.693 65.000 0.00 0.00 0.00 4.30
660 673 1.756538 GCTGGAAAGAGAGAGAGGGAG 59.243 57.143 0.00 0.00 0.00 4.30
661 674 1.621072 GGCTGGAAAGAGAGAGAGGGA 60.621 57.143 0.00 0.00 0.00 4.20
703 719 3.251043 CTCTCTTTCTCGCCGCGC 61.251 66.667 8.21 0.00 0.00 6.86
704 720 1.585002 CTCTCTCTTTCTCGCCGCG 60.585 63.158 6.39 6.39 0.00 6.46
705 721 1.876263 GCTCTCTCTTTCTCGCCGC 60.876 63.158 0.00 0.00 0.00 6.53
706 722 1.585002 CGCTCTCTCTTTCTCGCCG 60.585 63.158 0.00 0.00 0.00 6.46
707 723 0.248458 CTCGCTCTCTCTTTCTCGCC 60.248 60.000 0.00 0.00 0.00 5.54
815 835 2.103143 CACTAGTGCTCGGCTCCG 59.897 66.667 10.54 1.14 41.35 4.63
825 845 1.302511 GGTGTGGGTGGCACTAGTG 60.303 63.158 18.93 18.93 37.07 2.74
826 846 1.768482 TGGTGTGGGTGGCACTAGT 60.768 57.895 18.45 0.00 37.07 2.57
827 847 1.302511 GTGGTGTGGGTGGCACTAG 60.303 63.158 18.45 0.00 37.07 2.57
828 848 2.824880 GGTGGTGTGGGTGGCACTA 61.825 63.158 18.45 4.22 37.07 2.74
829 849 4.204028 GGTGGTGTGGGTGGCACT 62.204 66.667 18.45 0.00 37.07 4.40
830 850 4.514585 TGGTGGTGTGGGTGGCAC 62.515 66.667 9.70 9.70 36.22 5.01
831 851 4.514585 GTGGTGGTGTGGGTGGCA 62.515 66.667 0.00 0.00 0.00 4.92
832 852 2.748058 CTAGTGGTGGTGTGGGTGGC 62.748 65.000 0.00 0.00 0.00 5.01
833 853 1.374947 CTAGTGGTGGTGTGGGTGG 59.625 63.158 0.00 0.00 0.00 4.61
834 854 0.472471 AACTAGTGGTGGTGTGGGTG 59.528 55.000 0.00 0.00 0.00 4.61
835 855 2.106187 TAACTAGTGGTGGTGTGGGT 57.894 50.000 0.00 0.00 0.00 4.51
836 856 3.143728 GTTTAACTAGTGGTGGTGTGGG 58.856 50.000 0.00 0.00 0.00 4.61
875 895 3.646715 TTGGCTTCCCTCCCACCG 61.647 66.667 0.00 0.00 0.00 4.94
892 912 0.244994 CACTCACTCGCTTGGCTAGT 59.755 55.000 0.00 0.00 34.94 2.57
893 913 1.080995 GCACTCACTCGCTTGGCTAG 61.081 60.000 0.00 0.00 0.00 3.42
1019 1051 1.761667 CCCAGGAGGAGGAGAGCAG 60.762 68.421 0.00 0.00 38.24 4.24
1263 1296 5.760131 CAGGGAGGAAGTAAGGAATCAAAT 58.240 41.667 0.00 0.00 0.00 2.32
1266 1299 2.505819 GCAGGGAGGAAGTAAGGAATCA 59.494 50.000 0.00 0.00 0.00 2.57
1275 1308 2.227036 CCAGTGGCAGGGAGGAAGT 61.227 63.158 0.00 0.00 0.00 3.01
1384 1420 7.287061 TCTACTCCAGGATTCTGTTTCAAAAA 58.713 34.615 0.00 0.00 39.31 1.94
1385 1421 6.837312 TCTACTCCAGGATTCTGTTTCAAAA 58.163 36.000 0.00 0.00 39.31 2.44
1473 1509 4.421058 GTTGAAGAACCAACACCACTTTC 58.579 43.478 0.00 0.00 44.22 2.62
1537 1573 3.822735 ACTTCATTGTCACCCACATTCTG 59.177 43.478 0.00 0.00 33.90 3.02
1558 1594 5.401531 TCCACAGATGTAAGTAGGTTCAC 57.598 43.478 0.00 0.00 0.00 3.18
1578 1614 2.540973 GCAGACACCGTTGTTTTCTTCC 60.541 50.000 0.00 0.00 35.47 3.46
1579 1615 2.716398 GCAGACACCGTTGTTTTCTTC 58.284 47.619 0.00 0.00 35.47 2.87
1580 1616 1.063469 CGCAGACACCGTTGTTTTCTT 59.937 47.619 0.00 0.00 35.47 2.52
1620 1656 8.849168 CATGATTGCAACTTGTTTCCCTATATA 58.151 33.333 0.00 0.00 0.00 0.86
1621 1657 7.719483 CATGATTGCAACTTGTTTCCCTATAT 58.281 34.615 0.00 0.00 0.00 0.86
1622 1658 7.099266 CATGATTGCAACTTGTTTCCCTATA 57.901 36.000 0.00 0.00 0.00 1.31
1624 1660 5.389859 CATGATTGCAACTTGTTTCCCTA 57.610 39.130 0.00 0.00 0.00 3.53
1625 1661 4.261578 CATGATTGCAACTTGTTTCCCT 57.738 40.909 0.00 0.00 0.00 4.20
1741 1780 4.583871 ACTTCAAATGGCTAGACTTGGAG 58.416 43.478 4.62 4.62 31.73 3.86
1762 1801 1.696832 GCACGAGAAATCCTGCGGAC 61.697 60.000 0.00 0.00 32.98 4.79
1764 1803 1.424493 GAGCACGAGAAATCCTGCGG 61.424 60.000 0.00 0.00 34.69 5.69
1765 1804 0.459237 AGAGCACGAGAAATCCTGCG 60.459 55.000 0.00 0.00 34.69 5.18
1766 1805 1.663135 GAAGAGCACGAGAAATCCTGC 59.337 52.381 0.00 0.00 0.00 4.85
1767 1806 2.670414 GTGAAGAGCACGAGAAATCCTG 59.330 50.000 0.00 0.00 37.83 3.86
1806 1854 2.858839 GCAAAATGCAGTACGGTTACC 58.141 47.619 0.00 0.00 44.26 2.85
1861 1912 1.928503 GCGTTAACGGCATGCTAAGTA 59.071 47.619 27.82 2.32 40.23 2.24
1862 1913 0.725117 GCGTTAACGGCATGCTAAGT 59.275 50.000 27.82 12.56 40.23 2.24
1864 1915 0.724549 CAGCGTTAACGGCATGCTAA 59.275 50.000 27.82 5.68 40.23 3.09
1865 1916 0.390603 ACAGCGTTAACGGCATGCTA 60.391 50.000 27.82 0.00 40.23 3.49
1866 1917 1.671054 ACAGCGTTAACGGCATGCT 60.671 52.632 27.82 13.89 40.23 3.79
1867 1918 1.511887 CACAGCGTTAACGGCATGC 60.512 57.895 27.82 9.90 40.23 4.06
1868 1919 1.134487 CCACAGCGTTAACGGCATG 59.866 57.895 27.82 19.44 40.23 4.06
1881 1940 3.705638 CTGCGACACGTGCCACAG 61.706 66.667 17.22 15.98 0.00 3.66
2996 3055 2.673833 CTCCACCGTAAGTTCACAGTC 58.326 52.381 0.00 0.00 0.00 3.51
2997 3056 1.270147 GCTCCACCGTAAGTTCACAGT 60.270 52.381 0.00 0.00 0.00 3.55
2998 3057 1.000955 AGCTCCACCGTAAGTTCACAG 59.999 52.381 0.00 0.00 0.00 3.66
3138 3197 2.126346 GCAAACACATGGAGCGCC 60.126 61.111 2.29 0.00 0.00 6.53
3178 3237 5.014123 AGACATAAATGGAAGGTCAGACCAA 59.986 40.000 22.31 4.63 41.95 3.67
3197 3256 2.570752 ACACTCCAGAGATTGCAGACAT 59.429 45.455 0.70 0.00 0.00 3.06
3213 3272 0.316196 GCTTGCGTCAACACACACTC 60.316 55.000 0.00 0.00 0.00 3.51
3215 3274 0.179176 TTGCTTGCGTCAACACACAC 60.179 50.000 0.00 0.00 0.00 3.82
3226 3285 2.111756 GAAGAACACAAGTTGCTTGCG 58.888 47.619 1.81 2.48 44.43 4.85
3245 3304 5.068329 TGACAATGCAAAACCACATAACAGA 59.932 36.000 0.00 0.00 0.00 3.41
3248 3307 6.783892 ATTGACAATGCAAAACCACATAAC 57.216 33.333 0.00 0.00 0.00 1.89
3249 3308 7.598118 CACTATTGACAATGCAAAACCACATAA 59.402 33.333 11.05 0.00 0.00 1.90
3272 3332 1.618837 ACACCGTATCTGAGTTGCACT 59.381 47.619 0.00 0.00 0.00 4.40
3301 3361 3.437395 TGTGTCCATACGCCAACAAATAC 59.563 43.478 0.00 0.00 35.12 1.89
3310 3511 0.037697 TGTCAGTGTGTCCATACGCC 60.038 55.000 0.00 0.00 35.12 5.68
3311 3512 1.336887 ACTGTCAGTGTGTCCATACGC 60.337 52.381 4.21 0.00 36.62 4.42
3312 3513 2.030274 TGACTGTCAGTGTGTCCATACG 60.030 50.000 11.04 0.00 0.00 3.06
3316 3579 2.038659 TGATGACTGTCAGTGTGTCCA 58.961 47.619 16.46 1.71 0.00 4.02
3352 3618 2.547430 TGCTTCGGCTGATCATCTGATC 60.547 50.000 8.84 12.30 43.55 2.92
3357 3623 2.759191 TGTATGCTTCGGCTGATCATC 58.241 47.619 12.43 0.00 42.37 2.92
3358 3624 2.916702 TGTATGCTTCGGCTGATCAT 57.083 45.000 13.30 13.30 42.37 2.45
3359 3625 2.916702 ATGTATGCTTCGGCTGATCA 57.083 45.000 0.00 0.00 42.37 2.92
3360 3626 4.310769 ACTTATGTATGCTTCGGCTGATC 58.689 43.478 0.00 0.00 42.37 2.92
3361 3627 4.342862 ACTTATGTATGCTTCGGCTGAT 57.657 40.909 0.00 0.00 42.37 2.90
3363 3629 6.545504 AAATACTTATGTATGCTTCGGCTG 57.454 37.500 2.26 0.00 39.16 4.85
3364 3630 6.542370 ACAAAATACTTATGTATGCTTCGGCT 59.458 34.615 2.26 0.00 39.16 5.52
3365 3631 6.725246 ACAAAATACTTATGTATGCTTCGGC 58.275 36.000 2.26 0.00 39.16 5.54
3408 3674 2.436417 TCCTTGCACTTGCTTGGTATC 58.564 47.619 2.33 0.00 42.66 2.24
3438 3705 1.068895 TGTTTCTGTTGCATTGCCCAG 59.931 47.619 15.58 15.58 0.00 4.45
3439 3706 1.117994 TGTTTCTGTTGCATTGCCCA 58.882 45.000 6.12 2.12 0.00 5.36
3440 3707 1.866601 GTTGTTTCTGTTGCATTGCCC 59.133 47.619 6.12 0.00 0.00 5.36
3441 3708 2.548875 TGTTGTTTCTGTTGCATTGCC 58.451 42.857 6.12 0.00 0.00 4.52
3442 3709 4.508861 AGATTGTTGTTTCTGTTGCATTGC 59.491 37.500 0.46 0.46 0.00 3.56
3443 3710 5.557514 GCAGATTGTTGTTTCTGTTGCATTG 60.558 40.000 0.00 0.00 41.16 2.82
3444 3711 4.508861 GCAGATTGTTGTTTCTGTTGCATT 59.491 37.500 0.00 0.00 41.16 3.56
3445 3712 4.053295 GCAGATTGTTGTTTCTGTTGCAT 58.947 39.130 0.00 0.00 41.16 3.96
3446 3713 3.119209 TGCAGATTGTTGTTTCTGTTGCA 60.119 39.130 2.30 0.00 41.16 4.08
3451 3740 2.034939 TGCCTGCAGATTGTTGTTTCTG 59.965 45.455 17.39 0.00 41.84 3.02
3473 3762 4.861102 CTTCTTCTGAAGCCCATTGTTT 57.139 40.909 12.54 0.00 42.50 2.83
3677 3966 3.242543 GCAGCAGTACATCCATCTTTTCG 60.243 47.826 0.00 0.00 0.00 3.46
3683 3972 1.502163 GCCGCAGCAGTACATCCATC 61.502 60.000 0.00 0.00 39.53 3.51
3974 4263 0.671163 TTTACCTGTAGGGCAACGCG 60.671 55.000 3.53 3.53 40.27 6.01
3978 4267 2.304761 CACCTCTTTACCTGTAGGGCAA 59.695 50.000 2.53 0.00 40.27 4.52
3997 4286 4.629200 GTGAAGGACTGAAGTCATCATCAC 59.371 45.833 16.43 14.18 46.47 3.06
3998 4287 4.619160 CGTGAAGGACTGAAGTCATCATCA 60.619 45.833 16.43 7.96 46.47 3.07
3999 4288 3.862267 CGTGAAGGACTGAAGTCATCATC 59.138 47.826 16.43 5.90 46.47 2.92
4000 4289 3.368843 CCGTGAAGGACTGAAGTCATCAT 60.369 47.826 16.43 0.00 46.47 2.45
4001 4290 2.029020 CCGTGAAGGACTGAAGTCATCA 60.029 50.000 12.32 12.04 46.47 3.07
4007 4296 0.034059 AGTGCCGTGAAGGACTGAAG 59.966 55.000 0.00 0.00 45.00 3.02
4010 4299 0.888619 TCTAGTGCCGTGAAGGACTG 59.111 55.000 0.00 0.00 45.00 3.51
4014 4303 0.037326 TGCTTCTAGTGCCGTGAAGG 60.037 55.000 0.00 0.00 44.97 3.46
4022 4311 1.457346 ACTTGGCATGCTTCTAGTGC 58.543 50.000 18.92 0.00 38.12 4.40
4049 4338 6.581712 ACTTTTGTTTGTATGCTGGTCAAAT 58.418 32.000 0.00 0.00 34.41 2.32
4074 4363 3.181464 TGTGTCATCGGTCCAAAAGTGTA 60.181 43.478 0.00 0.00 0.00 2.90
4083 4372 2.811431 TGTGAATTTGTGTCATCGGTCC 59.189 45.455 0.00 0.00 0.00 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.