Multiple sequence alignment - TraesCS4B01G053500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G053500 chr4B 100.000 4258 0 0 1 4258 42160234 42164491 0.000000e+00 7864.0
1 TraesCS4B01G053500 chr4B 88.371 1479 152 17 1822 3286 42026778 42025306 0.000000e+00 1760.0
2 TraesCS4B01G053500 chr4B 88.184 1481 148 16 1822 3301 41788936 41787482 0.000000e+00 1740.0
3 TraesCS4B01G053500 chr4B 84.921 1711 197 33 1426 3121 41830680 41829016 0.000000e+00 1674.0
4 TraesCS4B01G053500 chr4B 88.586 1358 134 11 1943 3299 42018970 42017633 0.000000e+00 1629.0
5 TraesCS4B01G053500 chr4B 87.289 1361 141 16 1958 3315 42136010 42134679 0.000000e+00 1526.0
6 TraesCS4B01G053500 chr4B 82.930 1365 109 47 663 1942 42137383 42136058 0.000000e+00 1116.0
7 TraesCS4B01G053500 chr4B 91.757 740 61 0 1085 1824 41789640 41788901 0.000000e+00 1029.0
8 TraesCS4B01G053500 chr4B 94.074 675 32 8 3587 4258 24692298 24691629 0.000000e+00 1018.0
9 TraesCS4B01G053500 chr4B 87.296 858 89 10 803 1654 42051667 42050824 0.000000e+00 963.0
10 TraesCS4B01G053500 chr4B 83.183 999 105 36 804 1779 42019975 42019017 0.000000e+00 856.0
11 TraesCS4B01G053500 chr4B 82.772 505 75 8 935 1430 41832610 41832109 1.410000e-119 440.0
12 TraesCS4B01G053500 chr4D 95.848 3637 131 8 640 4258 29680124 29683758 0.000000e+00 5862.0
13 TraesCS4B01G053500 chr4D 93.908 673 39 2 3588 4258 191237982 191237310 0.000000e+00 1014.0
14 TraesCS4B01G053500 chr4D 88.490 669 68 4 1205 1873 29674171 29673512 0.000000e+00 800.0
15 TraesCS4B01G053500 chr4A 89.307 1356 126 11 1945 3299 573878717 573880054 0.000000e+00 1683.0
16 TraesCS4B01G053500 chr4A 84.377 1421 172 26 1688 3104 573376705 573378079 0.000000e+00 1349.0
17 TraesCS4B01G053500 chr4A 87.039 949 105 13 863 1804 573877658 573878595 0.000000e+00 1055.0
18 TraesCS4B01G053500 chr4A 85.556 810 91 16 1943 2747 573874336 573875124 0.000000e+00 824.0
19 TraesCS4B01G053500 chr4A 84.074 653 63 22 804 1444 573873264 573873887 3.670000e-165 592.0
20 TraesCS4B01G053500 chr4A 87.842 329 40 0 1457 1785 573873930 573874258 1.860000e-103 387.0
21 TraesCS4B01G053500 chr7D 94.379 676 34 4 3586 4258 165538000 165538674 0.000000e+00 1035.0
22 TraesCS4B01G053500 chr6D 93.750 672 40 2 3589 4258 439546522 439547193 0.000000e+00 1007.0
23 TraesCS4B01G053500 chr6B 93.750 672 40 2 3589 4258 431792478 431793149 0.000000e+00 1007.0
24 TraesCS4B01G053500 chr5D 93.759 673 38 4 3589 4258 451142259 451141588 0.000000e+00 1007.0
25 TraesCS4B01G053500 chr5D 93.601 672 41 2 3589 4258 474738941 474738270 0.000000e+00 1002.0
26 TraesCS4B01G053500 chr5D 85.603 257 33 4 1 254 313375893 313376148 2.520000e-67 267.0
27 TraesCS4B01G053500 chr2B 93.759 673 39 3 3589 4258 756716887 756716215 0.000000e+00 1007.0
28 TraesCS4B01G053500 chr3B 75.043 577 124 17 2631 3194 736438591 736438022 2.540000e-62 250.0
29 TraesCS4B01G053500 chr3B 97.059 34 1 0 302 335 252330420 252330453 1.650000e-04 58.4
30 TraesCS4B01G053500 chr5B 75.889 506 108 13 2669 3167 63544529 63545027 3.290000e-61 246.0
31 TraesCS4B01G053500 chr2D 80.172 232 30 11 43 270 70620249 70620468 4.410000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G053500 chr4B 42160234 42164491 4257 False 7864.0 7864 100.0000 1 4258 1 chr4B.!!$F1 4257
1 TraesCS4B01G053500 chr4B 42025306 42026778 1472 True 1760.0 1760 88.3710 1822 3286 1 chr4B.!!$R2 1464
2 TraesCS4B01G053500 chr4B 41787482 41789640 2158 True 1384.5 1740 89.9705 1085 3301 2 chr4B.!!$R4 2216
3 TraesCS4B01G053500 chr4B 42134679 42137383 2704 True 1321.0 1526 85.1095 663 3315 2 chr4B.!!$R7 2652
4 TraesCS4B01G053500 chr4B 42017633 42019975 2342 True 1242.5 1629 85.8845 804 3299 2 chr4B.!!$R6 2495
5 TraesCS4B01G053500 chr4B 41829016 41832610 3594 True 1057.0 1674 83.8465 935 3121 2 chr4B.!!$R5 2186
6 TraesCS4B01G053500 chr4B 24691629 24692298 669 True 1018.0 1018 94.0740 3587 4258 1 chr4B.!!$R1 671
7 TraesCS4B01G053500 chr4B 42050824 42051667 843 True 963.0 963 87.2960 803 1654 1 chr4B.!!$R3 851
8 TraesCS4B01G053500 chr4D 29680124 29683758 3634 False 5862.0 5862 95.8480 640 4258 1 chr4D.!!$F1 3618
9 TraesCS4B01G053500 chr4D 191237310 191237982 672 True 1014.0 1014 93.9080 3588 4258 1 chr4D.!!$R2 670
10 TraesCS4B01G053500 chr4D 29673512 29674171 659 True 800.0 800 88.4900 1205 1873 1 chr4D.!!$R1 668
11 TraesCS4B01G053500 chr4A 573376705 573378079 1374 False 1349.0 1349 84.3770 1688 3104 1 chr4A.!!$F1 1416
12 TraesCS4B01G053500 chr4A 573873264 573880054 6790 False 908.2 1683 86.7636 804 3299 5 chr4A.!!$F2 2495
13 TraesCS4B01G053500 chr7D 165538000 165538674 674 False 1035.0 1035 94.3790 3586 4258 1 chr7D.!!$F1 672
14 TraesCS4B01G053500 chr6D 439546522 439547193 671 False 1007.0 1007 93.7500 3589 4258 1 chr6D.!!$F1 669
15 TraesCS4B01G053500 chr6B 431792478 431793149 671 False 1007.0 1007 93.7500 3589 4258 1 chr6B.!!$F1 669
16 TraesCS4B01G053500 chr5D 451141588 451142259 671 True 1007.0 1007 93.7590 3589 4258 1 chr5D.!!$R1 669
17 TraesCS4B01G053500 chr5D 474738270 474738941 671 True 1002.0 1002 93.6010 3589 4258 1 chr5D.!!$R2 669
18 TraesCS4B01G053500 chr2B 756716215 756716887 672 True 1007.0 1007 93.7590 3589 4258 1 chr2B.!!$R1 669
19 TraesCS4B01G053500 chr3B 736438022 736438591 569 True 250.0 250 75.0430 2631 3194 1 chr3B.!!$R1 563

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
302 303 0.034863 GGATAGGCAAAACCGTCCCA 60.035 55.000 0.00 0.00 46.52 4.37 F
465 466 0.037447 GTGAGCTCCCTTTTGAGGCT 59.963 55.000 12.15 0.00 32.81 4.58 F
880 926 0.165944 GGTCGCATCGTTTGAACCAG 59.834 55.000 0.00 0.00 34.47 4.00 F
1267 1336 0.523546 CGAGGTGTTCGGTCTCATCG 60.524 60.000 0.00 3.67 45.54 3.84 F
1404 1473 1.201647 CTTCTCCGCTACTCCAACGAA 59.798 52.381 0.00 0.00 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1713 7595 0.108138 CGTAGCAGCTGTAGCCCTTT 60.108 55.000 16.64 0.0 43.38 3.11 R
2450 8406 1.069513 CCGTGGGGCATAAGATCGTAA 59.930 52.381 0.00 0.0 0.00 3.18 R
2870 8852 1.756430 AGACATCAGACTCAGCGCTA 58.244 50.000 10.99 0.0 0.00 4.26 R
3001 8989 1.299976 GCATCAAGGGTCCTTCCGT 59.700 57.895 0.00 0.0 37.00 4.69 R
3372 9360 1.725931 GCACGCAGTTGATTGCACTAC 60.726 52.381 0.00 0.0 41.61 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.970639 ACGTCGACCTCACCATGG 59.029 61.111 11.19 11.19 0.00 3.66
18 19 2.184322 CGTCGACCTCACCATGGG 59.816 66.667 18.09 5.22 0.00 4.00
19 20 2.125106 GTCGACCTCACCATGGGC 60.125 66.667 18.09 0.00 0.00 5.36
22 23 2.125106 GACCTCACCATGGGCGAC 60.125 66.667 18.09 0.00 0.00 5.19
23 24 4.082523 ACCTCACCATGGGCGACG 62.083 66.667 18.09 8.58 0.00 5.12
24 25 3.770040 CCTCACCATGGGCGACGA 61.770 66.667 18.09 3.41 0.00 4.20
25 26 2.509336 CTCACCATGGGCGACGAC 60.509 66.667 18.09 0.00 0.00 4.34
26 27 4.429212 TCACCATGGGCGACGACG 62.429 66.667 18.09 2.12 42.93 5.12
27 28 4.429212 CACCATGGGCGACGACGA 62.429 66.667 18.09 0.00 42.66 4.20
28 29 4.129737 ACCATGGGCGACGACGAG 62.130 66.667 18.09 0.00 42.66 4.18
29 30 4.873129 CCATGGGCGACGACGAGG 62.873 72.222 12.29 0.00 42.66 4.63
30 31 3.822192 CATGGGCGACGACGAGGA 61.822 66.667 12.29 0.00 42.66 3.71
31 32 3.518998 ATGGGCGACGACGAGGAG 61.519 66.667 12.29 0.00 42.66 3.69
35 36 3.210528 GCGACGACGAGGAGGGAT 61.211 66.667 12.29 0.00 42.66 3.85
36 37 2.716244 CGACGACGAGGAGGGATG 59.284 66.667 0.00 0.00 42.66 3.51
37 38 2.413765 GACGACGAGGAGGGATGC 59.586 66.667 0.00 0.00 0.00 3.91
38 39 3.471244 GACGACGAGGAGGGATGCG 62.471 68.421 0.00 0.00 0.00 4.73
39 40 4.933064 CGACGAGGAGGGATGCGC 62.933 72.222 0.00 0.00 0.00 6.09
40 41 4.933064 GACGAGGAGGGATGCGCG 62.933 72.222 0.00 0.00 0.00 6.86
43 44 3.838271 GAGGAGGGATGCGCGTGA 61.838 66.667 6.97 0.00 0.00 4.35
44 45 3.371097 GAGGAGGGATGCGCGTGAA 62.371 63.158 6.97 0.00 0.00 3.18
45 46 2.892425 GGAGGGATGCGCGTGAAG 60.892 66.667 6.97 0.00 0.00 3.02
46 47 2.184322 GAGGGATGCGCGTGAAGA 59.816 61.111 6.97 0.00 0.00 2.87
47 48 2.125512 AGGGATGCGCGTGAAGAC 60.126 61.111 6.97 0.00 0.00 3.01
57 58 4.907946 GTGAAGACGACGACGACA 57.092 55.556 15.32 5.81 42.66 4.35
58 59 3.379682 GTGAAGACGACGACGACAT 57.620 52.632 15.32 0.00 42.66 3.06
59 60 1.248721 GTGAAGACGACGACGACATC 58.751 55.000 15.32 10.96 42.66 3.06
60 61 0.167470 TGAAGACGACGACGACATCC 59.833 55.000 15.32 2.15 42.66 3.51
61 62 0.167470 GAAGACGACGACGACATCCA 59.833 55.000 15.32 0.00 42.66 3.41
62 63 0.594602 AAGACGACGACGACATCCAA 59.405 50.000 15.32 0.00 42.66 3.53
63 64 0.168348 AGACGACGACGACATCCAAG 59.832 55.000 15.32 0.00 42.66 3.61
64 65 0.167470 GACGACGACGACATCCAAGA 59.833 55.000 15.32 0.00 42.66 3.02
65 66 0.109873 ACGACGACGACATCCAAGAC 60.110 55.000 15.32 0.00 42.66 3.01
66 67 1.126421 CGACGACGACATCCAAGACG 61.126 60.000 0.00 0.00 42.66 4.18
67 68 0.167470 GACGACGACATCCAAGACGA 59.833 55.000 0.00 0.00 0.00 4.20
68 69 0.109873 ACGACGACATCCAAGACGAC 60.110 55.000 0.00 0.00 0.00 4.34
69 70 0.797249 CGACGACATCCAAGACGACC 60.797 60.000 0.00 0.00 0.00 4.79
70 71 0.242825 GACGACATCCAAGACGACCA 59.757 55.000 0.00 0.00 0.00 4.02
71 72 0.895530 ACGACATCCAAGACGACCAT 59.104 50.000 0.00 0.00 0.00 3.55
72 73 1.280982 CGACATCCAAGACGACCATG 58.719 55.000 0.00 0.00 0.00 3.66
73 74 1.656652 GACATCCAAGACGACCATGG 58.343 55.000 11.19 11.19 35.49 3.66
74 75 0.392998 ACATCCAAGACGACCATGGC 60.393 55.000 13.04 3.65 34.13 4.40
75 76 1.153369 ATCCAAGACGACCATGGCG 60.153 57.895 21.83 21.83 34.13 5.69
76 77 2.593468 ATCCAAGACGACCATGGCGG 62.593 60.000 25.35 15.29 42.50 6.13
77 78 3.499737 CAAGACGACCATGGCGGC 61.500 66.667 25.35 23.84 39.03 6.53
90 91 4.266070 GCGGCGGCGTCTCATCTA 62.266 66.667 32.35 0.00 0.00 1.98
91 92 2.645567 CGGCGGCGTCTCATCTAT 59.354 61.111 24.74 0.00 0.00 1.98
92 93 1.442857 CGGCGGCGTCTCATCTATC 60.443 63.158 24.74 0.00 0.00 2.08
93 94 1.857318 CGGCGGCGTCTCATCTATCT 61.857 60.000 24.74 0.00 0.00 1.98
94 95 0.315568 GGCGGCGTCTCATCTATCTT 59.684 55.000 9.37 0.00 0.00 2.40
95 96 1.269831 GGCGGCGTCTCATCTATCTTT 60.270 52.381 9.37 0.00 0.00 2.52
96 97 2.474816 GCGGCGTCTCATCTATCTTTT 58.525 47.619 9.37 0.00 0.00 2.27
97 98 2.866762 GCGGCGTCTCATCTATCTTTTT 59.133 45.455 9.37 0.00 0.00 1.94
135 136 8.573885 AGTTTAAGTTAGGTTTAAATGTGCTCC 58.426 33.333 0.00 0.00 33.87 4.70
136 137 5.977489 AAGTTAGGTTTAAATGTGCTCCC 57.023 39.130 0.00 0.00 0.00 4.30
137 138 4.007659 AGTTAGGTTTAAATGTGCTCCCG 58.992 43.478 0.00 0.00 0.00 5.14
138 139 2.871096 AGGTTTAAATGTGCTCCCGA 57.129 45.000 0.00 0.00 0.00 5.14
139 140 2.711542 AGGTTTAAATGTGCTCCCGAG 58.288 47.619 0.00 0.00 0.00 4.63
140 141 2.304761 AGGTTTAAATGTGCTCCCGAGA 59.695 45.455 0.00 0.00 0.00 4.04
141 142 2.418976 GGTTTAAATGTGCTCCCGAGAC 59.581 50.000 0.00 0.00 0.00 3.36
142 143 3.335579 GTTTAAATGTGCTCCCGAGACT 58.664 45.455 0.00 0.00 0.00 3.24
143 144 4.501071 GTTTAAATGTGCTCCCGAGACTA 58.499 43.478 0.00 0.00 0.00 2.59
144 145 2.969628 AAATGTGCTCCCGAGACTAG 57.030 50.000 0.00 0.00 0.00 2.57
145 146 1.853963 AATGTGCTCCCGAGACTAGT 58.146 50.000 0.00 0.00 0.00 2.57
146 147 1.853963 ATGTGCTCCCGAGACTAGTT 58.146 50.000 0.00 0.00 0.00 2.24
147 148 1.629043 TGTGCTCCCGAGACTAGTTT 58.371 50.000 0.00 0.00 0.00 2.66
148 149 1.272490 TGTGCTCCCGAGACTAGTTTG 59.728 52.381 0.00 0.00 0.00 2.93
149 150 1.544691 GTGCTCCCGAGACTAGTTTGA 59.455 52.381 0.00 0.00 0.00 2.69
150 151 2.029290 GTGCTCCCGAGACTAGTTTGAA 60.029 50.000 0.00 0.00 0.00 2.69
151 152 2.029290 TGCTCCCGAGACTAGTTTGAAC 60.029 50.000 0.00 0.00 0.00 3.18
152 153 2.029290 GCTCCCGAGACTAGTTTGAACA 60.029 50.000 0.00 0.00 0.00 3.18
153 154 3.368531 GCTCCCGAGACTAGTTTGAACAT 60.369 47.826 0.00 0.00 0.00 2.71
154 155 4.822026 CTCCCGAGACTAGTTTGAACATT 58.178 43.478 0.00 0.00 0.00 2.71
155 156 5.223449 TCCCGAGACTAGTTTGAACATTT 57.777 39.130 0.00 0.00 0.00 2.32
156 157 5.617252 TCCCGAGACTAGTTTGAACATTTT 58.383 37.500 0.00 0.00 0.00 1.82
157 158 6.059484 TCCCGAGACTAGTTTGAACATTTTT 58.941 36.000 0.00 0.00 0.00 1.94
158 159 7.218614 TCCCGAGACTAGTTTGAACATTTTTA 58.781 34.615 0.00 0.00 0.00 1.52
159 160 7.716123 TCCCGAGACTAGTTTGAACATTTTTAA 59.284 33.333 0.00 0.00 0.00 1.52
160 161 8.347035 CCCGAGACTAGTTTGAACATTTTTAAA 58.653 33.333 0.00 0.00 0.00 1.52
161 162 9.893305 CCGAGACTAGTTTGAACATTTTTAAAT 57.107 29.630 0.00 0.00 0.00 1.40
243 244 6.693761 TTTTCAAAATGTTCAGATGCGATG 57.306 33.333 0.00 0.00 0.00 3.84
244 245 5.375417 TTCAAAATGTTCAGATGCGATGT 57.625 34.783 0.00 0.00 0.00 3.06
245 246 4.725359 TCAAAATGTTCAGATGCGATGTG 58.275 39.130 0.00 0.00 0.00 3.21
246 247 4.455190 TCAAAATGTTCAGATGCGATGTGA 59.545 37.500 0.00 0.00 0.00 3.58
247 248 5.048852 TCAAAATGTTCAGATGCGATGTGAA 60.049 36.000 5.14 5.14 39.83 3.18
252 253 3.044235 TCAGATGCGATGTGAACAAGT 57.956 42.857 0.00 0.00 28.66 3.16
253 254 3.402110 TCAGATGCGATGTGAACAAGTT 58.598 40.909 0.00 0.00 28.66 2.66
254 255 3.187022 TCAGATGCGATGTGAACAAGTTG 59.813 43.478 0.00 0.00 28.66 3.16
255 256 2.095567 AGATGCGATGTGAACAAGTTGC 60.096 45.455 1.81 0.00 0.00 4.17
256 257 0.310543 TGCGATGTGAACAAGTTGCC 59.689 50.000 1.81 0.00 0.00 4.52
257 258 0.310543 GCGATGTGAACAAGTTGCCA 59.689 50.000 1.81 0.00 0.00 4.92
258 259 1.925946 GCGATGTGAACAAGTTGCCAC 60.926 52.381 17.32 17.32 0.00 5.01
259 260 1.660052 CGATGTGAACAAGTTGCCACG 60.660 52.381 18.31 8.06 30.25 4.94
260 261 0.667993 ATGTGAACAAGTTGCCACGG 59.332 50.000 18.31 0.00 30.25 4.94
261 262 1.299089 GTGAACAAGTTGCCACGGC 60.299 57.895 1.81 0.00 42.35 5.68
262 263 2.335011 GAACAAGTTGCCACGGCC 59.665 61.111 5.42 0.00 41.09 6.13
263 264 3.536498 GAACAAGTTGCCACGGCCG 62.536 63.158 26.86 26.86 41.09 6.13
276 277 4.799824 GGCCGCGCGTTAGGTACA 62.800 66.667 29.95 0.00 0.00 2.90
277 278 3.548231 GCCGCGCGTTAGGTACAC 61.548 66.667 29.95 2.24 0.00 2.90
278 279 2.180017 CCGCGCGTTAGGTACACT 59.820 61.111 29.95 0.00 0.00 3.55
279 280 2.156446 CCGCGCGTTAGGTACACTG 61.156 63.158 29.95 4.27 0.00 3.66
280 281 1.154169 CGCGCGTTAGGTACACTGA 60.154 57.895 24.19 0.00 0.00 3.41
281 282 1.400990 CGCGCGTTAGGTACACTGAC 61.401 60.000 24.19 0.00 32.67 3.51
282 283 1.074872 GCGCGTTAGGTACACTGACC 61.075 60.000 8.43 0.00 40.08 4.02
283 284 0.795735 CGCGTTAGGTACACTGACCG 60.796 60.000 0.00 0.28 44.88 4.79
284 285 0.457337 GCGTTAGGTACACTGACCGG 60.457 60.000 0.00 0.00 44.88 5.28
285 286 1.167851 CGTTAGGTACACTGACCGGA 58.832 55.000 9.46 0.00 44.88 5.14
286 287 1.747355 CGTTAGGTACACTGACCGGAT 59.253 52.381 9.46 0.00 44.88 4.18
287 288 2.945008 CGTTAGGTACACTGACCGGATA 59.055 50.000 9.46 0.00 44.88 2.59
288 289 3.003068 CGTTAGGTACACTGACCGGATAG 59.997 52.174 9.46 8.47 44.88 2.08
289 290 2.068834 AGGTACACTGACCGGATAGG 57.931 55.000 9.46 2.77 44.88 2.57
290 291 0.388294 GGTACACTGACCGGATAGGC 59.612 60.000 9.46 0.00 46.52 3.93
291 292 1.108776 GTACACTGACCGGATAGGCA 58.891 55.000 9.46 0.00 46.52 4.75
292 293 1.479323 GTACACTGACCGGATAGGCAA 59.521 52.381 9.46 0.00 46.52 4.52
293 294 0.981183 ACACTGACCGGATAGGCAAA 59.019 50.000 9.46 0.00 46.52 3.68
294 295 1.349688 ACACTGACCGGATAGGCAAAA 59.650 47.619 9.46 0.00 46.52 2.44
295 296 1.737793 CACTGACCGGATAGGCAAAAC 59.262 52.381 9.46 0.00 46.52 2.43
296 297 1.339727 ACTGACCGGATAGGCAAAACC 60.340 52.381 9.46 0.00 46.52 3.27
297 298 0.391927 TGACCGGATAGGCAAAACCG 60.392 55.000 9.46 0.00 46.52 4.44
298 299 0.392060 GACCGGATAGGCAAAACCGT 60.392 55.000 9.46 0.00 46.52 4.83
299 300 0.392060 ACCGGATAGGCAAAACCGTC 60.392 55.000 9.46 0.00 46.52 4.79
300 301 1.093496 CCGGATAGGCAAAACCGTCC 61.093 60.000 0.00 0.00 46.52 4.79
301 302 1.093496 CGGATAGGCAAAACCGTCCC 61.093 60.000 0.00 0.00 46.52 4.46
302 303 0.034863 GGATAGGCAAAACCGTCCCA 60.035 55.000 0.00 0.00 46.52 4.37
303 304 1.614850 GGATAGGCAAAACCGTCCCAA 60.615 52.381 0.00 0.00 46.52 4.12
304 305 2.164338 GATAGGCAAAACCGTCCCAAA 58.836 47.619 0.00 0.00 46.52 3.28
305 306 2.296073 TAGGCAAAACCGTCCCAAAT 57.704 45.000 0.00 0.00 46.52 2.32
306 307 0.678950 AGGCAAAACCGTCCCAAATG 59.321 50.000 0.00 0.00 46.52 2.32
307 308 0.320334 GGCAAAACCGTCCCAAATGG 60.320 55.000 0.00 0.00 40.24 3.16
308 309 0.676736 GCAAAACCGTCCCAAATGGA 59.323 50.000 0.00 0.00 42.41 3.41
320 321 4.766375 TCCCAAATGGACGAAATCTAGAC 58.234 43.478 0.00 0.00 38.61 2.59
321 322 4.224147 TCCCAAATGGACGAAATCTAGACA 59.776 41.667 0.00 0.00 38.61 3.41
322 323 4.941263 CCCAAATGGACGAAATCTAGACAA 59.059 41.667 0.00 0.00 37.39 3.18
323 324 5.414454 CCCAAATGGACGAAATCTAGACAAA 59.586 40.000 0.00 0.00 37.39 2.83
324 325 6.072175 CCCAAATGGACGAAATCTAGACAAAA 60.072 38.462 0.00 0.00 37.39 2.44
325 326 6.801862 CCAAATGGACGAAATCTAGACAAAAC 59.198 38.462 0.00 0.00 37.39 2.43
326 327 5.779806 ATGGACGAAATCTAGACAAAACG 57.220 39.130 0.00 0.00 0.00 3.60
327 328 4.873817 TGGACGAAATCTAGACAAAACGA 58.126 39.130 0.00 0.00 0.00 3.85
328 329 5.291178 TGGACGAAATCTAGACAAAACGAA 58.709 37.500 0.00 0.00 0.00 3.85
329 330 5.176223 TGGACGAAATCTAGACAAAACGAAC 59.824 40.000 0.00 0.00 0.00 3.95
330 331 5.246677 ACGAAATCTAGACAAAACGAACG 57.753 39.130 0.00 0.00 0.00 3.95
331 332 4.741676 ACGAAATCTAGACAAAACGAACGT 59.258 37.500 0.00 0.00 0.00 3.99
332 333 5.108103 ACGAAATCTAGACAAAACGAACGTC 60.108 40.000 0.00 0.00 0.00 4.34
333 334 5.587033 AAATCTAGACAAAACGAACGTCC 57.413 39.130 0.00 0.00 0.00 4.79
334 335 2.653890 TCTAGACAAAACGAACGTCCG 58.346 47.619 0.00 0.00 0.00 4.79
335 336 2.033299 TCTAGACAAAACGAACGTCCGT 59.967 45.455 0.00 0.00 45.64 4.69
341 342 3.122850 ACGAACGTCCGTTGAGGT 58.877 55.556 10.13 2.62 40.17 3.85
342 343 1.008079 ACGAACGTCCGTTGAGGTC 60.008 57.895 10.13 0.00 40.17 3.85
343 344 1.008194 CGAACGTCCGTTGAGGTCA 60.008 57.895 10.13 0.00 38.59 4.02
344 345 0.595567 CGAACGTCCGTTGAGGTCAA 60.596 55.000 10.13 0.00 38.59 3.18
345 346 1.792006 GAACGTCCGTTGAGGTCAAT 58.208 50.000 10.13 0.00 38.59 2.57
346 347 1.459592 GAACGTCCGTTGAGGTCAATG 59.540 52.381 10.13 5.12 38.59 2.82
354 355 3.926616 CGTTGAGGTCAATGGTTAGAGT 58.073 45.455 4.27 0.00 38.77 3.24
355 356 3.679980 CGTTGAGGTCAATGGTTAGAGTG 59.320 47.826 4.27 0.00 38.77 3.51
356 357 3.981071 TGAGGTCAATGGTTAGAGTGG 57.019 47.619 0.00 0.00 0.00 4.00
357 358 2.571653 TGAGGTCAATGGTTAGAGTGGG 59.428 50.000 0.00 0.00 0.00 4.61
358 359 1.282157 AGGTCAATGGTTAGAGTGGGC 59.718 52.381 0.00 0.00 0.00 5.36
359 360 1.682087 GGTCAATGGTTAGAGTGGGCC 60.682 57.143 0.00 0.00 0.00 5.80
360 361 1.282157 GTCAATGGTTAGAGTGGGCCT 59.718 52.381 4.53 0.00 0.00 5.19
361 362 1.992557 TCAATGGTTAGAGTGGGCCTT 59.007 47.619 4.53 0.00 0.00 4.35
362 363 3.054655 GTCAATGGTTAGAGTGGGCCTTA 60.055 47.826 4.53 0.00 0.00 2.69
363 364 3.785887 TCAATGGTTAGAGTGGGCCTTAT 59.214 43.478 4.53 0.00 0.00 1.73
364 365 4.229582 TCAATGGTTAGAGTGGGCCTTATT 59.770 41.667 4.53 0.00 0.00 1.40
365 366 3.926058 TGGTTAGAGTGGGCCTTATTC 57.074 47.619 4.53 0.00 0.00 1.75
366 367 2.508300 TGGTTAGAGTGGGCCTTATTCC 59.492 50.000 4.53 0.00 0.00 3.01
367 368 2.158652 GGTTAGAGTGGGCCTTATTCCC 60.159 54.545 4.53 0.00 44.17 3.97
368 369 1.815757 TAGAGTGGGCCTTATTCCCC 58.184 55.000 4.53 0.00 43.24 4.81
373 374 2.173126 TGGGCCTTATTCCCCATTTG 57.827 50.000 4.53 0.00 46.14 2.32
374 375 1.364328 TGGGCCTTATTCCCCATTTGT 59.636 47.619 4.53 0.00 46.14 2.83
375 376 2.587777 TGGGCCTTATTCCCCATTTGTA 59.412 45.455 4.53 0.00 46.14 2.41
376 377 2.963101 GGGCCTTATTCCCCATTTGTAC 59.037 50.000 0.84 0.00 41.13 2.90
377 378 3.628769 GGGCCTTATTCCCCATTTGTACA 60.629 47.826 0.84 0.00 41.13 2.90
378 379 3.636764 GGCCTTATTCCCCATTTGTACAG 59.363 47.826 0.00 0.00 0.00 2.74
379 380 4.278310 GCCTTATTCCCCATTTGTACAGT 58.722 43.478 0.00 0.00 0.00 3.55
380 381 4.097892 GCCTTATTCCCCATTTGTACAGTG 59.902 45.833 0.00 0.00 0.00 3.66
381 382 5.505780 CCTTATTCCCCATTTGTACAGTGA 58.494 41.667 10.82 0.00 0.00 3.41
382 383 6.129179 CCTTATTCCCCATTTGTACAGTGAT 58.871 40.000 10.82 0.00 0.00 3.06
383 384 6.039717 CCTTATTCCCCATTTGTACAGTGATG 59.960 42.308 10.82 9.47 0.00 3.07
384 385 4.649267 TTCCCCATTTGTACAGTGATGA 57.351 40.909 14.10 7.26 0.00 2.92
385 386 4.220693 TCCCCATTTGTACAGTGATGAG 57.779 45.455 14.10 4.73 0.00 2.90
386 387 3.054434 TCCCCATTTGTACAGTGATGAGG 60.054 47.826 14.10 11.54 0.00 3.86
387 388 2.684881 CCCATTTGTACAGTGATGAGGC 59.315 50.000 14.10 0.00 0.00 4.70
388 389 3.346315 CCATTTGTACAGTGATGAGGCA 58.654 45.455 14.10 0.00 0.00 4.75
389 390 3.376234 CCATTTGTACAGTGATGAGGCAG 59.624 47.826 14.10 0.00 0.00 4.85
390 391 2.099141 TTGTACAGTGATGAGGCAGC 57.901 50.000 0.00 0.00 0.00 5.25
391 392 0.250234 TGTACAGTGATGAGGCAGCC 59.750 55.000 1.84 1.84 0.00 4.85
392 393 0.462759 GTACAGTGATGAGGCAGCCC 60.463 60.000 8.22 0.00 0.00 5.19
393 394 0.618680 TACAGTGATGAGGCAGCCCT 60.619 55.000 8.22 0.00 46.74 5.19
409 410 3.775654 CTCGCAGGGGGTGAGTCC 61.776 72.222 0.00 0.00 46.73 3.85
410 411 4.316823 TCGCAGGGGGTGAGTCCT 62.317 66.667 0.00 0.00 36.25 3.85
411 412 3.775654 CGCAGGGGGTGAGTCCTC 61.776 72.222 0.00 0.00 36.25 3.71
412 413 3.775654 GCAGGGGGTGAGTCCTCG 61.776 72.222 0.00 0.00 37.63 4.63
413 414 2.037367 CAGGGGGTGAGTCCTCGA 59.963 66.667 0.00 0.00 37.63 4.04
414 415 1.381872 CAGGGGGTGAGTCCTCGAT 60.382 63.158 0.00 0.00 37.63 3.59
415 416 1.075896 AGGGGGTGAGTCCTCGATC 60.076 63.158 0.00 0.00 37.63 3.69
416 417 1.381327 GGGGGTGAGTCCTCGATCA 60.381 63.158 0.00 0.00 37.63 2.92
417 418 0.760945 GGGGGTGAGTCCTCGATCAT 60.761 60.000 0.00 0.00 37.63 2.45
418 419 1.480683 GGGGGTGAGTCCTCGATCATA 60.481 57.143 0.00 0.00 37.63 2.15
419 420 1.889829 GGGGTGAGTCCTCGATCATAG 59.110 57.143 0.00 0.00 36.25 2.23
420 421 2.588620 GGGTGAGTCCTCGATCATAGT 58.411 52.381 0.00 0.00 36.25 2.12
421 422 2.294791 GGGTGAGTCCTCGATCATAGTG 59.705 54.545 0.00 0.00 36.25 2.74
422 423 2.287909 GGTGAGTCCTCGATCATAGTGC 60.288 54.545 0.00 0.00 0.00 4.40
423 424 1.604278 TGAGTCCTCGATCATAGTGCG 59.396 52.381 0.00 0.00 0.00 5.34
424 425 1.604755 GAGTCCTCGATCATAGTGCGT 59.395 52.381 0.00 0.00 0.00 5.24
425 426 2.025155 AGTCCTCGATCATAGTGCGTT 58.975 47.619 0.00 0.00 0.00 4.84
426 427 2.033550 AGTCCTCGATCATAGTGCGTTC 59.966 50.000 0.00 0.00 0.00 3.95
427 428 2.021457 TCCTCGATCATAGTGCGTTCA 58.979 47.619 0.00 0.00 0.00 3.18
428 429 2.623416 TCCTCGATCATAGTGCGTTCAT 59.377 45.455 0.00 0.00 0.00 2.57
429 430 2.983136 CCTCGATCATAGTGCGTTCATC 59.017 50.000 0.00 0.00 0.00 2.92
430 431 2.650608 TCGATCATAGTGCGTTCATCG 58.349 47.619 0.00 0.00 43.12 3.84
431 432 2.289547 TCGATCATAGTGCGTTCATCGA 59.710 45.455 0.00 0.00 42.86 3.59
432 433 3.058224 TCGATCATAGTGCGTTCATCGAT 60.058 43.478 0.00 0.00 42.86 3.59
433 434 3.670523 CGATCATAGTGCGTTCATCGATT 59.329 43.478 0.00 0.00 42.86 3.34
434 435 4.148871 CGATCATAGTGCGTTCATCGATTT 59.851 41.667 0.00 0.00 42.86 2.17
435 436 5.332581 CGATCATAGTGCGTTCATCGATTTT 60.333 40.000 0.00 0.00 42.86 1.82
436 437 6.129194 CGATCATAGTGCGTTCATCGATTTTA 60.129 38.462 0.00 0.00 42.86 1.52
437 438 6.510746 TCATAGTGCGTTCATCGATTTTAG 57.489 37.500 0.00 0.00 42.86 1.85
438 439 5.462068 TCATAGTGCGTTCATCGATTTTAGG 59.538 40.000 0.00 0.00 42.86 2.69
439 440 3.596214 AGTGCGTTCATCGATTTTAGGT 58.404 40.909 0.00 0.00 42.86 3.08
440 441 4.000988 AGTGCGTTCATCGATTTTAGGTT 58.999 39.130 0.00 0.00 42.86 3.50
441 442 4.092968 AGTGCGTTCATCGATTTTAGGTTC 59.907 41.667 0.00 0.00 42.86 3.62
442 443 4.092968 GTGCGTTCATCGATTTTAGGTTCT 59.907 41.667 0.00 0.00 42.86 3.01
443 444 4.328983 TGCGTTCATCGATTTTAGGTTCTC 59.671 41.667 0.00 0.00 42.86 2.87
444 445 4.328983 GCGTTCATCGATTTTAGGTTCTCA 59.671 41.667 0.00 0.00 42.86 3.27
445 446 5.006746 GCGTTCATCGATTTTAGGTTCTCAT 59.993 40.000 0.00 0.00 42.86 2.90
446 447 6.414079 CGTTCATCGATTTTAGGTTCTCATG 58.586 40.000 0.00 0.00 42.86 3.07
447 448 6.036083 CGTTCATCGATTTTAGGTTCTCATGT 59.964 38.462 0.00 0.00 42.86 3.21
448 449 6.908870 TCATCGATTTTAGGTTCTCATGTG 57.091 37.500 0.00 0.00 0.00 3.21
449 450 6.639563 TCATCGATTTTAGGTTCTCATGTGA 58.360 36.000 0.00 0.00 0.00 3.58
450 451 6.758416 TCATCGATTTTAGGTTCTCATGTGAG 59.242 38.462 0.00 3.61 43.36 3.51
451 452 4.870426 TCGATTTTAGGTTCTCATGTGAGC 59.130 41.667 5.14 3.29 41.80 4.26
452 453 4.872691 CGATTTTAGGTTCTCATGTGAGCT 59.127 41.667 10.78 7.01 41.80 4.09
453 454 5.006165 CGATTTTAGGTTCTCATGTGAGCTC 59.994 44.000 6.82 6.82 41.80 4.09
454 455 3.895232 TTAGGTTCTCATGTGAGCTCC 57.105 47.619 12.15 3.09 41.80 4.70
455 456 0.908198 AGGTTCTCATGTGAGCTCCC 59.092 55.000 12.15 0.00 41.80 4.30
456 457 0.908198 GGTTCTCATGTGAGCTCCCT 59.092 55.000 12.15 0.00 41.80 4.20
457 458 1.280421 GGTTCTCATGTGAGCTCCCTT 59.720 52.381 12.15 0.00 41.80 3.95
458 459 2.290577 GGTTCTCATGTGAGCTCCCTTT 60.291 50.000 12.15 0.00 41.80 3.11
459 460 3.416156 GTTCTCATGTGAGCTCCCTTTT 58.584 45.455 12.15 0.00 41.80 2.27
460 461 3.063510 TCTCATGTGAGCTCCCTTTTG 57.936 47.619 12.15 2.23 41.80 2.44
461 462 2.639347 TCTCATGTGAGCTCCCTTTTGA 59.361 45.455 12.15 6.52 41.80 2.69
462 463 3.008330 CTCATGTGAGCTCCCTTTTGAG 58.992 50.000 12.15 12.09 35.13 3.02
463 464 2.089980 CATGTGAGCTCCCTTTTGAGG 58.910 52.381 12.15 0.00 32.81 3.86
464 465 0.250901 TGTGAGCTCCCTTTTGAGGC 60.251 55.000 12.15 0.00 32.81 4.70
465 466 0.037447 GTGAGCTCCCTTTTGAGGCT 59.963 55.000 12.15 0.00 32.81 4.58
466 467 1.279271 GTGAGCTCCCTTTTGAGGCTA 59.721 52.381 12.15 0.00 32.81 3.93
467 468 1.556911 TGAGCTCCCTTTTGAGGCTAG 59.443 52.381 12.15 0.00 32.81 3.42
468 469 1.557371 GAGCTCCCTTTTGAGGCTAGT 59.443 52.381 0.87 0.00 32.81 2.57
469 470 1.557371 AGCTCCCTTTTGAGGCTAGTC 59.443 52.381 0.00 0.00 32.81 2.59
470 471 1.279271 GCTCCCTTTTGAGGCTAGTCA 59.721 52.381 0.00 0.00 32.81 3.41
471 472 2.290323 GCTCCCTTTTGAGGCTAGTCAA 60.290 50.000 0.00 0.00 34.56 3.18
472 473 3.604582 CTCCCTTTTGAGGCTAGTCAAG 58.395 50.000 0.00 0.00 37.72 3.02
473 474 2.979678 TCCCTTTTGAGGCTAGTCAAGT 59.020 45.455 0.00 0.00 37.72 3.16
474 475 3.077359 CCCTTTTGAGGCTAGTCAAGTG 58.923 50.000 0.00 0.00 37.72 3.16
475 476 2.485814 CCTTTTGAGGCTAGTCAAGTGC 59.514 50.000 0.00 0.00 37.72 4.40
476 477 3.406764 CTTTTGAGGCTAGTCAAGTGCT 58.593 45.455 0.00 0.00 37.72 4.40
477 478 3.492102 TTTGAGGCTAGTCAAGTGCTT 57.508 42.857 0.00 0.00 37.72 3.91
478 479 2.462456 TGAGGCTAGTCAAGTGCTTG 57.538 50.000 5.63 5.63 41.71 4.01
479 480 1.082690 GAGGCTAGTCAAGTGCTTGC 58.917 55.000 7.03 3.32 40.24 4.01
480 481 0.397941 AGGCTAGTCAAGTGCTTGCA 59.602 50.000 7.03 0.00 40.24 4.08
481 482 1.004044 AGGCTAGTCAAGTGCTTGCAT 59.996 47.619 7.03 1.47 40.24 3.96
482 483 1.131883 GGCTAGTCAAGTGCTTGCATG 59.868 52.381 7.03 0.00 40.24 4.06
483 484 1.808945 GCTAGTCAAGTGCTTGCATGT 59.191 47.619 7.03 0.00 40.24 3.21
484 485 2.227388 GCTAGTCAAGTGCTTGCATGTT 59.773 45.455 7.03 0.00 40.24 2.71
485 486 3.304928 GCTAGTCAAGTGCTTGCATGTTT 60.305 43.478 7.03 0.00 40.24 2.83
486 487 3.088194 AGTCAAGTGCTTGCATGTTTG 57.912 42.857 7.03 5.11 40.24 2.93
487 488 2.129607 GTCAAGTGCTTGCATGTTTGG 58.870 47.619 7.03 0.00 40.24 3.28
488 489 1.755959 TCAAGTGCTTGCATGTTTGGT 59.244 42.857 7.03 0.00 40.24 3.67
489 490 2.129607 CAAGTGCTTGCATGTTTGGTC 58.870 47.619 0.00 0.00 33.45 4.02
490 491 1.696063 AGTGCTTGCATGTTTGGTCT 58.304 45.000 0.00 0.00 0.00 3.85
491 492 2.034124 AGTGCTTGCATGTTTGGTCTT 58.966 42.857 0.00 0.00 0.00 3.01
492 493 2.035066 AGTGCTTGCATGTTTGGTCTTC 59.965 45.455 0.00 0.00 0.00 2.87
493 494 2.035066 GTGCTTGCATGTTTGGTCTTCT 59.965 45.455 0.00 0.00 0.00 2.85
494 495 3.253188 GTGCTTGCATGTTTGGTCTTCTA 59.747 43.478 0.00 0.00 0.00 2.10
495 496 3.253188 TGCTTGCATGTTTGGTCTTCTAC 59.747 43.478 1.14 0.00 0.00 2.59
496 497 3.667960 GCTTGCATGTTTGGTCTTCTACG 60.668 47.826 1.14 0.00 0.00 3.51
497 498 3.394674 TGCATGTTTGGTCTTCTACGA 57.605 42.857 0.00 0.00 0.00 3.43
498 499 3.064207 TGCATGTTTGGTCTTCTACGAC 58.936 45.455 0.00 0.00 0.00 4.34
499 500 3.244078 TGCATGTTTGGTCTTCTACGACT 60.244 43.478 0.00 0.00 34.38 4.18
500 501 3.746492 GCATGTTTGGTCTTCTACGACTT 59.254 43.478 0.00 0.00 34.38 3.01
501 502 4.143094 GCATGTTTGGTCTTCTACGACTTC 60.143 45.833 0.00 0.00 34.38 3.01
502 503 4.931661 TGTTTGGTCTTCTACGACTTCT 57.068 40.909 0.00 0.00 34.38 2.85
503 504 5.272283 TGTTTGGTCTTCTACGACTTCTT 57.728 39.130 0.00 0.00 34.38 2.52
504 505 5.287226 TGTTTGGTCTTCTACGACTTCTTC 58.713 41.667 0.00 0.00 34.38 2.87
505 506 5.163488 TGTTTGGTCTTCTACGACTTCTTCA 60.163 40.000 0.00 0.00 34.38 3.02
506 507 4.500603 TGGTCTTCTACGACTTCTTCAC 57.499 45.455 0.00 0.00 34.38 3.18
507 508 4.142790 TGGTCTTCTACGACTTCTTCACT 58.857 43.478 0.00 0.00 34.38 3.41
508 509 5.311265 TGGTCTTCTACGACTTCTTCACTA 58.689 41.667 0.00 0.00 34.38 2.74
509 510 5.411977 TGGTCTTCTACGACTTCTTCACTAG 59.588 44.000 0.00 0.00 34.38 2.57
510 511 5.412286 GGTCTTCTACGACTTCTTCACTAGT 59.588 44.000 0.00 0.00 34.38 2.57
511 512 6.072563 GGTCTTCTACGACTTCTTCACTAGTT 60.073 42.308 0.00 0.00 34.38 2.24
512 513 6.797995 GTCTTCTACGACTTCTTCACTAGTTG 59.202 42.308 0.00 0.00 32.98 3.16
513 514 6.485984 TCTTCTACGACTTCTTCACTAGTTGT 59.514 38.462 0.00 0.00 40.96 3.32
514 515 6.238610 TCTACGACTTCTTCACTAGTTGTC 57.761 41.667 0.00 0.00 39.24 3.18
515 516 5.996513 TCTACGACTTCTTCACTAGTTGTCT 59.003 40.000 0.00 0.00 39.24 3.41
516 517 4.861210 ACGACTTCTTCACTAGTTGTCTG 58.139 43.478 0.00 0.00 34.64 3.51
517 518 4.230657 CGACTTCTTCACTAGTTGTCTGG 58.769 47.826 0.00 0.00 0.00 3.86
518 519 4.023107 CGACTTCTTCACTAGTTGTCTGGA 60.023 45.833 0.00 0.00 0.00 3.86
519 520 5.461032 ACTTCTTCACTAGTTGTCTGGAG 57.539 43.478 0.00 0.00 0.00 3.86
520 521 5.141182 ACTTCTTCACTAGTTGTCTGGAGA 58.859 41.667 0.00 0.00 0.00 3.71
521 522 5.598830 ACTTCTTCACTAGTTGTCTGGAGAA 59.401 40.000 0.00 0.00 32.97 2.87
522 523 6.098409 ACTTCTTCACTAGTTGTCTGGAGAAA 59.902 38.462 0.00 0.00 33.39 2.52
523 524 6.479972 TCTTCACTAGTTGTCTGGAGAAAA 57.520 37.500 0.00 0.00 33.39 2.29
524 525 6.516718 TCTTCACTAGTTGTCTGGAGAAAAG 58.483 40.000 0.00 0.00 33.39 2.27
525 526 5.871396 TCACTAGTTGTCTGGAGAAAAGT 57.129 39.130 0.00 0.00 0.00 2.66
526 527 5.844004 TCACTAGTTGTCTGGAGAAAAGTC 58.156 41.667 0.00 0.00 0.00 3.01
527 528 4.681942 CACTAGTTGTCTGGAGAAAAGTCG 59.318 45.833 0.00 0.00 0.00 4.18
528 529 4.583489 ACTAGTTGTCTGGAGAAAAGTCGA 59.417 41.667 0.00 0.00 0.00 4.20
529 530 3.983741 AGTTGTCTGGAGAAAAGTCGAG 58.016 45.455 0.00 0.00 0.00 4.04
530 531 3.637229 AGTTGTCTGGAGAAAAGTCGAGA 59.363 43.478 0.00 0.00 0.00 4.04
531 532 4.282195 AGTTGTCTGGAGAAAAGTCGAGAT 59.718 41.667 0.00 0.00 34.30 2.75
532 533 5.477291 AGTTGTCTGGAGAAAAGTCGAGATA 59.523 40.000 0.00 0.00 34.30 1.98
533 534 6.153680 AGTTGTCTGGAGAAAAGTCGAGATAT 59.846 38.462 0.00 0.00 34.30 1.63
534 535 7.339721 AGTTGTCTGGAGAAAAGTCGAGATATA 59.660 37.037 0.00 0.00 34.30 0.86
535 536 7.640597 TGTCTGGAGAAAAGTCGAGATATAA 57.359 36.000 0.00 0.00 34.30 0.98
536 537 7.708051 TGTCTGGAGAAAAGTCGAGATATAAG 58.292 38.462 0.00 0.00 34.30 1.73
537 538 7.556635 TGTCTGGAGAAAAGTCGAGATATAAGA 59.443 37.037 0.00 0.00 34.30 2.10
538 539 8.573035 GTCTGGAGAAAAGTCGAGATATAAGAT 58.427 37.037 0.00 0.00 34.30 2.40
539 540 9.794719 TCTGGAGAAAAGTCGAGATATAAGATA 57.205 33.333 0.00 0.00 0.00 1.98
542 543 9.796120 GGAGAAAAGTCGAGATATAAGATATGG 57.204 37.037 0.00 0.00 0.00 2.74
547 548 9.707957 AAAGTCGAGATATAAGATATGGATCCT 57.292 33.333 14.23 0.89 31.81 3.24
548 549 8.918202 AGTCGAGATATAAGATATGGATCCTC 57.082 38.462 14.23 1.93 31.81 3.71
549 550 8.723365 AGTCGAGATATAAGATATGGATCCTCT 58.277 37.037 14.23 4.61 31.81 3.69
552 553 9.785982 CGAGATATAAGATATGGATCCTCTACA 57.214 37.037 14.23 0.17 31.81 2.74
580 581 8.480133 AAAAATCCTATACGACCTCATCTACT 57.520 34.615 0.00 0.00 0.00 2.57
581 582 9.584008 AAAAATCCTATACGACCTCATCTACTA 57.416 33.333 0.00 0.00 0.00 1.82
582 583 8.564509 AAATCCTATACGACCTCATCTACTAC 57.435 38.462 0.00 0.00 0.00 2.73
583 584 5.718146 TCCTATACGACCTCATCTACTACG 58.282 45.833 0.00 0.00 0.00 3.51
584 585 4.869297 CCTATACGACCTCATCTACTACGG 59.131 50.000 0.00 0.00 0.00 4.02
585 586 2.996249 ACGACCTCATCTACTACGGA 57.004 50.000 0.00 0.00 0.00 4.69
586 587 2.836262 ACGACCTCATCTACTACGGAG 58.164 52.381 0.00 0.00 0.00 4.63
596 597 8.749841 CTCATCTACTACGGAGGATTTTAATG 57.250 38.462 0.00 0.00 0.00 1.90
597 598 7.152645 TCATCTACTACGGAGGATTTTAATGC 58.847 38.462 0.00 0.00 0.00 3.56
598 599 6.474140 TCTACTACGGAGGATTTTAATGCA 57.526 37.500 0.00 0.00 0.00 3.96
599 600 7.062749 TCTACTACGGAGGATTTTAATGCAT 57.937 36.000 0.00 0.00 0.00 3.96
600 601 7.152645 TCTACTACGGAGGATTTTAATGCATC 58.847 38.462 0.00 0.00 0.00 3.91
601 602 5.930135 ACTACGGAGGATTTTAATGCATCT 58.070 37.500 0.00 0.00 0.00 2.90
602 603 6.357367 ACTACGGAGGATTTTAATGCATCTT 58.643 36.000 0.00 0.00 0.00 2.40
603 604 6.828785 ACTACGGAGGATTTTAATGCATCTTT 59.171 34.615 0.00 0.00 0.00 2.52
604 605 6.530019 ACGGAGGATTTTAATGCATCTTTT 57.470 33.333 0.00 0.00 0.00 2.27
605 606 7.639113 ACGGAGGATTTTAATGCATCTTTTA 57.361 32.000 0.00 0.00 0.00 1.52
606 607 8.062065 ACGGAGGATTTTAATGCATCTTTTAA 57.938 30.769 0.00 0.00 0.00 1.52
607 608 8.527810 ACGGAGGATTTTAATGCATCTTTTAAA 58.472 29.630 0.00 0.00 0.00 1.52
608 609 8.807581 CGGAGGATTTTAATGCATCTTTTAAAC 58.192 33.333 0.00 0.00 29.53 2.01
609 610 9.875691 GGAGGATTTTAATGCATCTTTTAAACT 57.124 29.630 0.00 0.00 29.53 2.66
620 621 8.477984 TGCATCTTTTAAACTTTTATCATGGC 57.522 30.769 0.00 0.00 0.00 4.40
621 622 7.548780 TGCATCTTTTAAACTTTTATCATGGCC 59.451 33.333 0.00 0.00 0.00 5.36
622 623 7.011389 GCATCTTTTAAACTTTTATCATGGCCC 59.989 37.037 0.00 0.00 0.00 5.80
623 624 7.790782 TCTTTTAAACTTTTATCATGGCCCT 57.209 32.000 0.00 0.00 0.00 5.19
624 625 8.201242 TCTTTTAAACTTTTATCATGGCCCTT 57.799 30.769 0.00 0.00 0.00 3.95
625 626 8.655901 TCTTTTAAACTTTTATCATGGCCCTTT 58.344 29.630 0.00 0.00 0.00 3.11
626 627 9.936759 CTTTTAAACTTTTATCATGGCCCTTTA 57.063 29.630 0.00 0.00 0.00 1.85
631 632 9.806448 AAACTTTTATCATGGCCCTTTATTTTT 57.194 25.926 0.00 0.00 0.00 1.94
632 633 9.448438 AACTTTTATCATGGCCCTTTATTTTTC 57.552 29.630 0.00 0.00 0.00 2.29
633 634 8.825774 ACTTTTATCATGGCCCTTTATTTTTCT 58.174 29.630 0.00 0.00 0.00 2.52
638 639 8.788238 ATCATGGCCCTTTATTTTTCTATTCT 57.212 30.769 0.00 0.00 0.00 2.40
639 640 8.608185 TCATGGCCCTTTATTTTTCTATTCTT 57.392 30.769 0.00 0.00 0.00 2.52
640 641 8.477256 TCATGGCCCTTTATTTTTCTATTCTTG 58.523 33.333 0.00 0.00 0.00 3.02
641 642 8.477256 CATGGCCCTTTATTTTTCTATTCTTGA 58.523 33.333 0.00 0.00 0.00 3.02
790 814 8.620116 TCTGAATTGATTTGTGATGTTGTCTA 57.380 30.769 0.00 0.00 0.00 2.59
797 843 6.818142 TGATTTGTGATGTTGTCTATGACGAT 59.182 34.615 0.00 0.00 34.95 3.73
849 895 6.611642 ACACATGTGTAGACTTGGTATATCCT 59.388 38.462 29.66 0.00 42.90 3.24
880 926 0.165944 GGTCGCATCGTTTGAACCAG 59.834 55.000 0.00 0.00 34.47 4.00
881 927 0.865769 GTCGCATCGTTTGAACCAGT 59.134 50.000 0.00 0.00 0.00 4.00
1209 1278 3.864686 GCGCGTGCCATCGACAAT 61.865 61.111 10.56 0.00 33.98 2.71
1212 1281 2.321060 CGTGCCATCGACAATCGC 59.679 61.111 0.00 0.00 40.21 4.58
1267 1336 0.523546 CGAGGTGTTCGGTCTCATCG 60.524 60.000 0.00 3.67 45.54 3.84
1404 1473 1.201647 CTTCTCCGCTACTCCAACGAA 59.798 52.381 0.00 0.00 0.00 3.85
1713 7595 2.642154 ACAACACCGGTGGTTTGATA 57.358 45.000 36.47 0.00 31.02 2.15
1867 7773 1.268283 ACCAGGAGCAGGAGGTTAGC 61.268 60.000 0.00 0.00 0.00 3.09
1895 7806 5.526115 TCGGTGCTATTATTACTTCCTTCG 58.474 41.667 0.00 0.00 0.00 3.79
1930 7848 2.125350 CTGCTCTCTCGCCCCAAC 60.125 66.667 0.00 0.00 0.00 3.77
2144 8097 6.043411 GGCGAGTCAAGTAGATACTTTTGAT 58.957 40.000 2.47 0.00 43.57 2.57
2330 8286 5.475564 GGTGGCTATAAAAAGAGTGTCCAAA 59.524 40.000 0.00 0.00 0.00 3.28
3248 9236 0.392193 CCGCATCTGAGCTTTCAGGT 60.392 55.000 3.36 0.00 38.23 4.00
3309 9297 0.540133 AACATGCACATCTGCCCACA 60.540 50.000 0.00 0.00 43.51 4.17
3370 9358 8.444715 TGCTAATAAAATGCATGCAAAAGAAAG 58.555 29.630 26.68 16.88 0.00 2.62
3389 9377 2.341257 AGAGTAGTGCAATCAACTGCG 58.659 47.619 0.00 0.00 45.74 5.18
3467 9455 2.476199 ACTGGATCCAAGAGAGGAAGG 58.524 52.381 17.00 2.19 41.92 3.46
3538 9526 1.560923 CTTCTCGGTACAATGCTCCG 58.439 55.000 9.71 9.71 44.76 4.63
3540 9528 2.202690 TCGGTACAATGCTCCGCG 60.203 61.111 0.00 0.00 43.35 6.46
3583 9571 3.704566 ACGAGCTAATGTAACATGAGGGA 59.295 43.478 0.00 0.00 0.00 4.20
3600 9588 4.014406 GAGGGACCGTTGTTGGAAATATT 58.986 43.478 0.00 0.00 0.00 1.28
3754 9743 0.033405 AAGCCTCTACCGGACTAGCA 60.033 55.000 9.46 0.00 0.00 3.49
3801 9790 1.867233 CTAGCCATGGACATGCGTTAC 59.133 52.381 18.40 0.00 37.49 2.50
3906 9895 8.487313 TCAAGTTTATTGCTATCGCTTTTCTA 57.513 30.769 0.00 0.00 36.97 2.10
4031 10020 2.577700 AGGTGCTCTACAGGTATCTCG 58.422 52.381 0.00 0.00 0.00 4.04
4108 10098 3.548793 AGAGGTATCTCAGGCCCAG 57.451 57.895 5.64 0.00 42.34 4.45
4178 10168 7.548097 TGAGTTAGTCACAGGATCTTGTATTC 58.452 38.462 10.50 2.12 0.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.646175 CCCATGGTGAGGTCGACGT 61.646 63.158 11.12 11.12 0.00 4.34
1 2 2.184322 CCCATGGTGAGGTCGACG 59.816 66.667 11.73 0.00 0.00 5.12
2 3 2.125106 GCCCATGGTGAGGTCGAC 60.125 66.667 11.73 7.13 0.00 4.20
4 5 3.770040 TCGCCCATGGTGAGGTCG 61.770 66.667 11.73 4.40 37.29 4.79
5 6 2.125106 GTCGCCCATGGTGAGGTC 60.125 66.667 11.73 0.00 43.30 3.85
6 7 4.082523 CGTCGCCCATGGTGAGGT 62.083 66.667 11.73 0.00 43.30 3.85
7 8 3.770040 TCGTCGCCCATGGTGAGG 61.770 66.667 11.73 13.47 43.30 3.86
8 9 2.509336 GTCGTCGCCCATGGTGAG 60.509 66.667 11.73 4.31 43.30 3.51
9 10 4.429212 CGTCGTCGCCCATGGTGA 62.429 66.667 11.73 5.33 40.17 4.02
10 11 4.429212 TCGTCGTCGCCCATGGTG 62.429 66.667 11.73 2.61 36.96 4.17
11 12 4.129737 CTCGTCGTCGCCCATGGT 62.130 66.667 11.73 0.00 36.96 3.55
12 13 4.873129 CCTCGTCGTCGCCCATGG 62.873 72.222 4.14 4.14 36.96 3.66
13 14 3.758088 CTCCTCGTCGTCGCCCATG 62.758 68.421 0.00 0.00 36.96 3.66
14 15 3.518998 CTCCTCGTCGTCGCCCAT 61.519 66.667 0.00 0.00 36.96 4.00
18 19 3.210528 ATCCCTCCTCGTCGTCGC 61.211 66.667 0.00 0.00 36.96 5.19
19 20 2.716244 CATCCCTCCTCGTCGTCG 59.284 66.667 0.00 0.00 38.55 5.12
20 21 2.413765 GCATCCCTCCTCGTCGTC 59.586 66.667 0.00 0.00 0.00 4.20
21 22 3.518998 CGCATCCCTCCTCGTCGT 61.519 66.667 0.00 0.00 0.00 4.34
22 23 4.933064 GCGCATCCCTCCTCGTCG 62.933 72.222 0.30 0.00 0.00 5.12
23 24 4.933064 CGCGCATCCCTCCTCGTC 62.933 72.222 8.75 0.00 0.00 4.20
26 27 3.371097 TTCACGCGCATCCCTCCTC 62.371 63.158 5.73 0.00 0.00 3.71
27 28 3.376935 CTTCACGCGCATCCCTCCT 62.377 63.158 5.73 0.00 0.00 3.69
28 29 2.892425 CTTCACGCGCATCCCTCC 60.892 66.667 5.73 0.00 0.00 4.30
29 30 2.167861 GTCTTCACGCGCATCCCTC 61.168 63.158 5.73 0.00 0.00 4.30
30 31 2.125512 GTCTTCACGCGCATCCCT 60.126 61.111 5.73 0.00 0.00 4.20
31 32 3.554692 CGTCTTCACGCGCATCCC 61.555 66.667 5.73 0.00 39.69 3.85
32 33 2.506217 TCGTCTTCACGCGCATCC 60.506 61.111 5.73 0.00 46.28 3.51
33 34 2.689766 GTCGTCTTCACGCGCATC 59.310 61.111 5.73 0.00 46.28 3.91
34 35 3.172575 CGTCGTCTTCACGCGCAT 61.173 61.111 5.73 0.00 46.28 4.73
35 36 4.316571 TCGTCGTCTTCACGCGCA 62.317 61.111 5.73 0.00 46.28 6.09
36 37 3.813688 GTCGTCGTCTTCACGCGC 61.814 66.667 5.73 0.00 46.28 6.86
37 38 3.512452 CGTCGTCGTCTTCACGCG 61.512 66.667 3.53 3.53 46.28 6.01
38 39 2.127496 TCGTCGTCGTCTTCACGC 60.127 61.111 1.33 0.00 46.28 5.34
40 41 1.248721 GATGTCGTCGTCGTCTTCAC 58.751 55.000 1.33 0.00 38.33 3.18
41 42 0.167470 GGATGTCGTCGTCGTCTTCA 59.833 55.000 10.73 6.18 38.33 3.02
42 43 0.167470 TGGATGTCGTCGTCGTCTTC 59.833 55.000 10.73 4.54 38.33 2.87
43 44 0.594602 TTGGATGTCGTCGTCGTCTT 59.405 50.000 10.73 0.00 38.33 3.01
44 45 0.168348 CTTGGATGTCGTCGTCGTCT 59.832 55.000 10.73 0.00 38.33 4.18
45 46 0.167470 TCTTGGATGTCGTCGTCGTC 59.833 55.000 1.33 3.45 38.33 4.20
46 47 0.109873 GTCTTGGATGTCGTCGTCGT 60.110 55.000 1.33 0.00 38.33 4.34
47 48 1.126421 CGTCTTGGATGTCGTCGTCG 61.126 60.000 0.00 0.00 38.55 5.12
48 49 0.167470 TCGTCTTGGATGTCGTCGTC 59.833 55.000 0.00 0.00 0.00 4.20
49 50 0.109873 GTCGTCTTGGATGTCGTCGT 60.110 55.000 0.00 0.00 0.00 4.34
50 51 0.797249 GGTCGTCTTGGATGTCGTCG 60.797 60.000 0.00 0.00 0.00 5.12
51 52 0.242825 TGGTCGTCTTGGATGTCGTC 59.757 55.000 0.00 0.00 0.00 4.20
52 53 0.895530 ATGGTCGTCTTGGATGTCGT 59.104 50.000 0.00 0.00 0.00 4.34
53 54 1.280982 CATGGTCGTCTTGGATGTCG 58.719 55.000 0.00 0.00 0.00 4.35
54 55 1.656652 CCATGGTCGTCTTGGATGTC 58.343 55.000 2.57 0.00 41.70 3.06
55 56 0.392998 GCCATGGTCGTCTTGGATGT 60.393 55.000 14.67 0.00 41.70 3.06
56 57 1.431488 CGCCATGGTCGTCTTGGATG 61.431 60.000 14.67 0.00 41.70 3.51
57 58 1.153369 CGCCATGGTCGTCTTGGAT 60.153 57.895 14.67 0.00 41.70 3.41
58 59 2.264480 CGCCATGGTCGTCTTGGA 59.736 61.111 14.67 0.00 41.70 3.53
59 60 2.819595 CCGCCATGGTCGTCTTGG 60.820 66.667 21.61 7.25 41.96 3.61
60 61 3.499737 GCCGCCATGGTCGTCTTG 61.500 66.667 21.61 11.14 41.21 3.02
73 74 3.559657 ATAGATGAGACGCCGCCGC 62.560 63.158 0.00 0.00 38.22 6.53
74 75 1.442857 GATAGATGAGACGCCGCCG 60.443 63.158 0.00 0.00 41.14 6.46
75 76 0.315568 AAGATAGATGAGACGCCGCC 59.684 55.000 0.00 0.00 0.00 6.13
76 77 2.141535 AAAGATAGATGAGACGCCGC 57.858 50.000 0.00 0.00 0.00 6.53
109 110 8.573885 GGAGCACATTTAAACCTAACTTAAACT 58.426 33.333 0.00 0.00 32.56 2.66
110 111 7.811236 GGGAGCACATTTAAACCTAACTTAAAC 59.189 37.037 0.00 0.00 32.56 2.01
111 112 7.308710 CGGGAGCACATTTAAACCTAACTTAAA 60.309 37.037 0.00 0.00 33.87 1.52
112 113 6.149807 CGGGAGCACATTTAAACCTAACTTAA 59.850 38.462 0.00 0.00 0.00 1.85
113 114 5.644636 CGGGAGCACATTTAAACCTAACTTA 59.355 40.000 0.00 0.00 0.00 2.24
114 115 4.457949 CGGGAGCACATTTAAACCTAACTT 59.542 41.667 0.00 0.00 0.00 2.66
115 116 4.007659 CGGGAGCACATTTAAACCTAACT 58.992 43.478 0.00 0.00 0.00 2.24
116 117 4.004982 TCGGGAGCACATTTAAACCTAAC 58.995 43.478 0.00 0.00 0.00 2.34
117 118 4.020039 TCTCGGGAGCACATTTAAACCTAA 60.020 41.667 0.00 0.00 0.00 2.69
118 119 3.516300 TCTCGGGAGCACATTTAAACCTA 59.484 43.478 0.00 0.00 0.00 3.08
119 120 2.304761 TCTCGGGAGCACATTTAAACCT 59.695 45.455 0.00 0.00 0.00 3.50
120 121 2.418976 GTCTCGGGAGCACATTTAAACC 59.581 50.000 0.00 0.00 0.00 3.27
121 122 3.335579 AGTCTCGGGAGCACATTTAAAC 58.664 45.455 0.00 0.00 0.00 2.01
122 123 3.695830 AGTCTCGGGAGCACATTTAAA 57.304 42.857 0.00 0.00 0.00 1.52
123 124 3.767673 ACTAGTCTCGGGAGCACATTTAA 59.232 43.478 0.00 0.00 0.00 1.52
124 125 3.362706 ACTAGTCTCGGGAGCACATTTA 58.637 45.455 0.00 0.00 0.00 1.40
125 126 2.180276 ACTAGTCTCGGGAGCACATTT 58.820 47.619 0.00 0.00 0.00 2.32
126 127 1.853963 ACTAGTCTCGGGAGCACATT 58.146 50.000 0.00 0.00 0.00 2.71
127 128 1.853963 AACTAGTCTCGGGAGCACAT 58.146 50.000 0.00 0.00 0.00 3.21
128 129 1.272490 CAAACTAGTCTCGGGAGCACA 59.728 52.381 0.00 0.00 0.00 4.57
129 130 1.544691 TCAAACTAGTCTCGGGAGCAC 59.455 52.381 0.00 0.00 0.00 4.40
130 131 1.919240 TCAAACTAGTCTCGGGAGCA 58.081 50.000 0.00 0.00 0.00 4.26
131 132 2.029290 TGTTCAAACTAGTCTCGGGAGC 60.029 50.000 0.00 0.00 0.00 4.70
132 133 3.936372 TGTTCAAACTAGTCTCGGGAG 57.064 47.619 0.00 0.00 0.00 4.30
133 134 4.884668 AATGTTCAAACTAGTCTCGGGA 57.115 40.909 0.00 0.00 0.00 5.14
134 135 5.941948 AAAATGTTCAAACTAGTCTCGGG 57.058 39.130 0.00 0.00 0.00 5.14
135 136 9.893305 ATTTAAAAATGTTCAAACTAGTCTCGG 57.107 29.630 0.00 0.00 0.00 4.63
219 220 6.700960 ACATCGCATCTGAACATTTTGAAAAA 59.299 30.769 0.00 0.00 0.00 1.94
220 221 6.144241 CACATCGCATCTGAACATTTTGAAAA 59.856 34.615 0.00 0.00 0.00 2.29
221 222 5.630264 CACATCGCATCTGAACATTTTGAAA 59.370 36.000 0.00 0.00 0.00 2.69
222 223 5.048852 TCACATCGCATCTGAACATTTTGAA 60.049 36.000 0.00 0.00 0.00 2.69
223 224 4.455190 TCACATCGCATCTGAACATTTTGA 59.545 37.500 0.00 0.00 0.00 2.69
224 225 4.725359 TCACATCGCATCTGAACATTTTG 58.275 39.130 0.00 0.00 0.00 2.44
225 226 5.156355 GTTCACATCGCATCTGAACATTTT 58.844 37.500 10.24 0.00 42.22 1.82
226 227 4.216042 TGTTCACATCGCATCTGAACATTT 59.784 37.500 12.42 0.00 45.55 2.32
227 228 3.752747 TGTTCACATCGCATCTGAACATT 59.247 39.130 12.42 0.00 45.55 2.71
228 229 3.337358 TGTTCACATCGCATCTGAACAT 58.663 40.909 12.42 0.00 45.55 2.71
230 231 3.187227 ACTTGTTCACATCGCATCTGAAC 59.813 43.478 8.98 8.98 42.73 3.18
231 232 3.402110 ACTTGTTCACATCGCATCTGAA 58.598 40.909 0.00 0.00 0.00 3.02
232 233 3.044235 ACTTGTTCACATCGCATCTGA 57.956 42.857 0.00 0.00 0.00 3.27
233 234 3.485633 CAACTTGTTCACATCGCATCTG 58.514 45.455 0.00 0.00 0.00 2.90
234 235 2.095567 GCAACTTGTTCACATCGCATCT 60.096 45.455 0.00 0.00 0.00 2.90
235 236 2.245096 GCAACTTGTTCACATCGCATC 58.755 47.619 0.00 0.00 0.00 3.91
236 237 1.068333 GGCAACTTGTTCACATCGCAT 60.068 47.619 0.00 0.00 0.00 4.73
237 238 0.310543 GGCAACTTGTTCACATCGCA 59.689 50.000 0.00 0.00 0.00 5.10
238 239 0.310543 TGGCAACTTGTTCACATCGC 59.689 50.000 0.00 0.00 37.61 4.58
239 240 1.660052 CGTGGCAACTTGTTCACATCG 60.660 52.381 13.79 0.00 37.61 3.84
240 241 1.334960 CCGTGGCAACTTGTTCACATC 60.335 52.381 13.79 0.00 37.61 3.06
241 242 0.667993 CCGTGGCAACTTGTTCACAT 59.332 50.000 13.79 0.00 37.61 3.21
242 243 1.999071 GCCGTGGCAACTTGTTCACA 61.999 55.000 5.89 0.00 41.49 3.58
243 244 1.299089 GCCGTGGCAACTTGTTCAC 60.299 57.895 5.89 7.09 41.49 3.18
244 245 2.485795 GGCCGTGGCAACTTGTTCA 61.486 57.895 13.76 0.00 44.11 3.18
245 246 2.335011 GGCCGTGGCAACTTGTTC 59.665 61.111 13.76 0.00 44.11 3.18
246 247 3.591835 CGGCCGTGGCAACTTGTT 61.592 61.111 19.50 0.00 44.11 2.83
259 260 4.799824 TGTACCTAACGCGCGGCC 62.800 66.667 35.22 13.08 0.00 6.13
260 261 3.548231 GTGTACCTAACGCGCGGC 61.548 66.667 35.22 14.35 0.00 6.53
261 262 2.156446 CAGTGTACCTAACGCGCGG 61.156 63.158 35.22 18.70 43.67 6.46
262 263 1.154169 TCAGTGTACCTAACGCGCG 60.154 57.895 30.96 30.96 43.67 6.86
263 264 1.074872 GGTCAGTGTACCTAACGCGC 61.075 60.000 5.73 0.00 43.67 6.86
264 265 0.795735 CGGTCAGTGTACCTAACGCG 60.796 60.000 3.53 3.53 43.67 6.01
265 266 0.457337 CCGGTCAGTGTACCTAACGC 60.457 60.000 0.00 0.00 37.39 4.84
266 267 1.167851 TCCGGTCAGTGTACCTAACG 58.832 55.000 0.00 0.00 37.39 3.18
267 268 3.317430 CCTATCCGGTCAGTGTACCTAAC 59.683 52.174 0.00 0.00 37.39 2.34
268 269 3.559069 CCTATCCGGTCAGTGTACCTAA 58.441 50.000 0.00 0.19 37.39 2.69
269 270 2.750807 GCCTATCCGGTCAGTGTACCTA 60.751 54.545 0.00 0.44 37.39 3.08
270 271 2.027949 GCCTATCCGGTCAGTGTACCT 61.028 57.143 0.00 0.00 37.39 3.08
271 272 0.388294 GCCTATCCGGTCAGTGTACC 59.612 60.000 0.00 0.00 36.08 3.34
272 273 1.108776 TGCCTATCCGGTCAGTGTAC 58.891 55.000 0.00 0.00 34.25 2.90
273 274 1.855295 TTGCCTATCCGGTCAGTGTA 58.145 50.000 0.00 0.00 34.25 2.90
274 275 0.981183 TTTGCCTATCCGGTCAGTGT 59.019 50.000 0.00 0.00 34.25 3.55
275 276 1.737793 GTTTTGCCTATCCGGTCAGTG 59.262 52.381 0.00 0.00 34.25 3.66
276 277 1.339727 GGTTTTGCCTATCCGGTCAGT 60.340 52.381 0.00 0.00 34.25 3.41
277 278 1.379527 GGTTTTGCCTATCCGGTCAG 58.620 55.000 0.00 0.00 34.25 3.51
278 279 0.391927 CGGTTTTGCCTATCCGGTCA 60.392 55.000 0.00 0.00 39.41 4.02
279 280 0.392060 ACGGTTTTGCCTATCCGGTC 60.392 55.000 0.00 0.00 46.06 4.79
280 281 0.392060 GACGGTTTTGCCTATCCGGT 60.392 55.000 0.00 0.00 46.06 5.28
281 282 1.093496 GGACGGTTTTGCCTATCCGG 61.093 60.000 0.00 0.00 46.06 5.14
282 283 1.093496 GGGACGGTTTTGCCTATCCG 61.093 60.000 0.00 0.00 46.98 4.18
283 284 0.034863 TGGGACGGTTTTGCCTATCC 60.035 55.000 0.00 0.00 38.68 2.59
284 285 1.828979 TTGGGACGGTTTTGCCTATC 58.171 50.000 0.00 0.00 34.25 2.08
285 286 2.296073 TTTGGGACGGTTTTGCCTAT 57.704 45.000 0.00 0.00 34.25 2.57
286 287 1.889829 CATTTGGGACGGTTTTGCCTA 59.110 47.619 0.00 0.00 34.25 3.93
287 288 0.678950 CATTTGGGACGGTTTTGCCT 59.321 50.000 0.00 0.00 34.25 4.75
288 289 0.320334 CCATTTGGGACGGTTTTGCC 60.320 55.000 0.00 0.00 40.01 4.52
289 290 0.676736 TCCATTTGGGACGGTTTTGC 59.323 50.000 0.00 0.00 42.15 3.68
298 299 4.224147 TGTCTAGATTTCGTCCATTTGGGA 59.776 41.667 0.00 0.00 45.89 4.37
299 300 4.513442 TGTCTAGATTTCGTCCATTTGGG 58.487 43.478 0.00 0.00 35.41 4.12
300 301 6.494893 TTTGTCTAGATTTCGTCCATTTGG 57.505 37.500 0.00 0.00 0.00 3.28
301 302 6.519761 CGTTTTGTCTAGATTTCGTCCATTTG 59.480 38.462 0.00 0.00 0.00 2.32
302 303 6.425721 TCGTTTTGTCTAGATTTCGTCCATTT 59.574 34.615 0.00 0.00 0.00 2.32
303 304 5.929992 TCGTTTTGTCTAGATTTCGTCCATT 59.070 36.000 0.00 0.00 0.00 3.16
304 305 5.475719 TCGTTTTGTCTAGATTTCGTCCAT 58.524 37.500 0.00 0.00 0.00 3.41
305 306 4.873817 TCGTTTTGTCTAGATTTCGTCCA 58.126 39.130 0.00 0.00 0.00 4.02
306 307 5.606266 GTTCGTTTTGTCTAGATTTCGTCC 58.394 41.667 0.00 0.00 0.00 4.79
307 308 5.108103 ACGTTCGTTTTGTCTAGATTTCGTC 60.108 40.000 0.00 0.00 0.00 4.20
308 309 4.741676 ACGTTCGTTTTGTCTAGATTTCGT 59.258 37.500 0.00 0.00 0.00 3.85
309 310 5.246677 ACGTTCGTTTTGTCTAGATTTCG 57.753 39.130 0.00 0.00 0.00 3.46
310 311 5.606266 GGACGTTCGTTTTGTCTAGATTTC 58.394 41.667 0.00 0.00 33.21 2.17
311 312 4.149396 CGGACGTTCGTTTTGTCTAGATTT 59.851 41.667 8.45 0.00 33.21 2.17
312 313 3.671928 CGGACGTTCGTTTTGTCTAGATT 59.328 43.478 8.45 0.00 33.21 2.40
313 314 3.240069 CGGACGTTCGTTTTGTCTAGAT 58.760 45.455 8.45 0.00 33.21 1.98
314 315 2.033299 ACGGACGTTCGTTTTGTCTAGA 59.967 45.455 18.05 0.00 40.85 2.43
315 316 2.388121 ACGGACGTTCGTTTTGTCTAG 58.612 47.619 18.05 0.00 40.85 2.43
316 317 2.490328 ACGGACGTTCGTTTTGTCTA 57.510 45.000 18.05 0.00 40.85 2.59
317 318 3.350766 ACGGACGTTCGTTTTGTCT 57.649 47.368 18.05 0.00 40.85 3.41
324 325 1.008079 GACCTCAACGGACGTTCGT 60.008 57.895 18.05 18.05 46.08 3.85
325 326 0.595567 TTGACCTCAACGGACGTTCG 60.596 55.000 16.31 16.31 36.00 3.95
326 327 1.459592 CATTGACCTCAACGGACGTTC 59.540 52.381 7.18 0.00 38.86 3.95
327 328 1.508632 CATTGACCTCAACGGACGTT 58.491 50.000 3.99 3.99 38.86 3.99
328 329 0.320421 CCATTGACCTCAACGGACGT 60.320 55.000 0.00 0.00 41.36 4.34
329 330 0.320421 ACCATTGACCTCAACGGACG 60.320 55.000 7.13 0.00 41.36 4.79
330 331 1.892209 AACCATTGACCTCAACGGAC 58.108 50.000 7.13 0.00 41.36 4.79
331 332 2.901192 TCTAACCATTGACCTCAACGGA 59.099 45.455 7.13 0.00 41.36 4.69
332 333 3.262420 CTCTAACCATTGACCTCAACGG 58.738 50.000 0.00 0.00 44.13 4.44
333 334 3.679980 CACTCTAACCATTGACCTCAACG 59.320 47.826 0.00 0.00 38.86 4.10
334 335 4.003648 CCACTCTAACCATTGACCTCAAC 58.996 47.826 0.00 0.00 38.86 3.18
335 336 3.009033 CCCACTCTAACCATTGACCTCAA 59.991 47.826 0.00 0.00 40.51 3.02
336 337 2.571653 CCCACTCTAACCATTGACCTCA 59.428 50.000 0.00 0.00 0.00 3.86
337 338 2.681097 GCCCACTCTAACCATTGACCTC 60.681 54.545 0.00 0.00 0.00 3.85
338 339 1.282157 GCCCACTCTAACCATTGACCT 59.718 52.381 0.00 0.00 0.00 3.85
339 340 1.682087 GGCCCACTCTAACCATTGACC 60.682 57.143 0.00 0.00 0.00 4.02
340 341 1.282157 AGGCCCACTCTAACCATTGAC 59.718 52.381 0.00 0.00 0.00 3.18
341 342 1.668826 AGGCCCACTCTAACCATTGA 58.331 50.000 0.00 0.00 0.00 2.57
342 343 2.514458 AAGGCCCACTCTAACCATTG 57.486 50.000 0.00 0.00 0.00 2.82
343 344 4.386424 GGAATAAGGCCCACTCTAACCATT 60.386 45.833 0.00 0.00 0.00 3.16
344 345 3.138468 GGAATAAGGCCCACTCTAACCAT 59.862 47.826 0.00 0.00 0.00 3.55
345 346 2.508300 GGAATAAGGCCCACTCTAACCA 59.492 50.000 0.00 0.00 0.00 3.67
346 347 2.158652 GGGAATAAGGCCCACTCTAACC 60.159 54.545 0.00 0.00 45.31 2.85
347 348 3.210232 GGGAATAAGGCCCACTCTAAC 57.790 52.381 0.00 0.00 45.31 2.34
355 356 2.174685 ACAAATGGGGAATAAGGCCC 57.825 50.000 0.00 0.00 45.25 5.80
356 357 3.636764 CTGTACAAATGGGGAATAAGGCC 59.363 47.826 0.00 0.00 0.00 5.19
357 358 4.097892 CACTGTACAAATGGGGAATAAGGC 59.902 45.833 0.00 0.00 0.00 4.35
358 359 5.505780 TCACTGTACAAATGGGGAATAAGG 58.494 41.667 0.00 0.00 0.00 2.69
359 360 6.828273 TCATCACTGTACAAATGGGGAATAAG 59.172 38.462 0.00 0.00 0.00 1.73
360 361 6.726379 TCATCACTGTACAAATGGGGAATAA 58.274 36.000 0.00 0.00 0.00 1.40
361 362 6.320434 TCATCACTGTACAAATGGGGAATA 57.680 37.500 0.00 0.00 0.00 1.75
362 363 5.191727 TCATCACTGTACAAATGGGGAAT 57.808 39.130 0.00 0.00 0.00 3.01
363 364 4.567537 CCTCATCACTGTACAAATGGGGAA 60.568 45.833 19.75 0.00 41.48 3.97
364 365 3.054434 CCTCATCACTGTACAAATGGGGA 60.054 47.826 19.75 6.46 41.48 4.81
365 366 3.282021 CCTCATCACTGTACAAATGGGG 58.718 50.000 14.01 14.01 33.62 4.96
366 367 2.684881 GCCTCATCACTGTACAAATGGG 59.315 50.000 0.00 1.41 0.00 4.00
367 368 3.346315 TGCCTCATCACTGTACAAATGG 58.654 45.455 0.00 0.00 0.00 3.16
368 369 3.181503 GCTGCCTCATCACTGTACAAATG 60.182 47.826 0.00 1.78 0.00 2.32
369 370 3.012518 GCTGCCTCATCACTGTACAAAT 58.987 45.455 0.00 0.00 0.00 2.32
370 371 2.426522 GCTGCCTCATCACTGTACAAA 58.573 47.619 0.00 0.00 0.00 2.83
371 372 1.339055 GGCTGCCTCATCACTGTACAA 60.339 52.381 12.43 0.00 0.00 2.41
372 373 0.250234 GGCTGCCTCATCACTGTACA 59.750 55.000 12.43 0.00 0.00 2.90
373 374 0.462759 GGGCTGCCTCATCACTGTAC 60.463 60.000 19.68 0.00 0.00 2.90
374 375 0.618680 AGGGCTGCCTCATCACTGTA 60.619 55.000 19.68 0.00 0.00 2.74
375 376 1.908340 GAGGGCTGCCTCATCACTGT 61.908 60.000 19.68 0.00 36.86 3.55
376 377 1.153208 GAGGGCTGCCTCATCACTG 60.153 63.158 19.68 0.00 36.86 3.66
377 378 2.729479 CGAGGGCTGCCTCATCACT 61.729 63.158 19.68 5.54 36.70 3.41
378 379 2.202987 CGAGGGCTGCCTCATCAC 60.203 66.667 19.68 0.00 36.70 3.06
379 380 4.166888 GCGAGGGCTGCCTCATCA 62.167 66.667 19.68 0.00 36.70 3.07
380 381 4.166888 TGCGAGGGCTGCCTCATC 62.167 66.667 19.68 13.04 40.82 2.92
381 382 4.172512 CTGCGAGGGCTGCCTCAT 62.173 66.667 19.68 4.89 40.82 2.90
391 392 3.775654 GACTCACCCCCTGCGAGG 61.776 72.222 0.00 0.00 34.30 4.63
392 393 3.775654 GGACTCACCCCCTGCGAG 61.776 72.222 0.00 0.00 0.00 5.03
393 394 4.316823 AGGACTCACCCCCTGCGA 62.317 66.667 0.00 0.00 40.05 5.10
394 395 3.775654 GAGGACTCACCCCCTGCG 61.776 72.222 0.00 0.00 40.05 5.18
395 396 3.775654 CGAGGACTCACCCCCTGC 61.776 72.222 0.00 0.00 40.05 4.85
396 397 1.381872 ATCGAGGACTCACCCCCTG 60.382 63.158 0.00 0.00 40.05 4.45
397 398 1.075896 GATCGAGGACTCACCCCCT 60.076 63.158 0.00 0.00 40.05 4.79
398 399 0.760945 ATGATCGAGGACTCACCCCC 60.761 60.000 0.00 0.00 40.05 5.40
399 400 1.889829 CTATGATCGAGGACTCACCCC 59.110 57.143 0.00 0.00 40.05 4.95
400 401 2.294791 CACTATGATCGAGGACTCACCC 59.705 54.545 0.00 0.00 40.05 4.61
401 402 2.287909 GCACTATGATCGAGGACTCACC 60.288 54.545 0.00 0.00 39.35 4.02
402 403 2.603412 CGCACTATGATCGAGGACTCAC 60.603 54.545 0.00 0.00 0.00 3.51
403 404 1.604278 CGCACTATGATCGAGGACTCA 59.396 52.381 0.00 0.00 0.00 3.41
404 405 1.604755 ACGCACTATGATCGAGGACTC 59.395 52.381 0.00 0.00 0.00 3.36
405 406 1.681538 ACGCACTATGATCGAGGACT 58.318 50.000 0.00 0.00 0.00 3.85
406 407 2.223502 TGAACGCACTATGATCGAGGAC 60.224 50.000 0.00 0.00 0.00 3.85
407 408 2.021457 TGAACGCACTATGATCGAGGA 58.979 47.619 0.00 0.00 0.00 3.71
408 409 2.492019 TGAACGCACTATGATCGAGG 57.508 50.000 0.00 0.00 0.00 4.63
409 410 2.654056 CGATGAACGCACTATGATCGAG 59.346 50.000 0.00 0.00 35.79 4.04
410 411 2.289547 TCGATGAACGCACTATGATCGA 59.710 45.455 0.00 0.00 39.36 3.59
411 412 2.650608 TCGATGAACGCACTATGATCG 58.349 47.619 0.00 0.00 42.26 3.69
412 413 5.582439 AAATCGATGAACGCACTATGATC 57.418 39.130 0.00 0.00 42.26 2.92
413 414 5.991328 AAAATCGATGAACGCACTATGAT 57.009 34.783 0.00 0.00 42.26 2.45
414 415 5.462068 CCTAAAATCGATGAACGCACTATGA 59.538 40.000 0.00 0.00 42.26 2.15
415 416 5.234329 ACCTAAAATCGATGAACGCACTATG 59.766 40.000 0.00 0.00 42.26 2.23
416 417 5.357257 ACCTAAAATCGATGAACGCACTAT 58.643 37.500 0.00 0.00 42.26 2.12
417 418 4.751060 ACCTAAAATCGATGAACGCACTA 58.249 39.130 0.00 0.00 42.26 2.74
418 419 3.596214 ACCTAAAATCGATGAACGCACT 58.404 40.909 0.00 0.00 42.26 4.40
419 420 4.092968 AGAACCTAAAATCGATGAACGCAC 59.907 41.667 0.00 0.00 42.26 5.34
420 421 4.250464 AGAACCTAAAATCGATGAACGCA 58.750 39.130 0.00 0.00 42.26 5.24
421 422 4.328983 TGAGAACCTAAAATCGATGAACGC 59.671 41.667 0.00 0.00 42.26 4.84
422 423 6.036083 ACATGAGAACCTAAAATCGATGAACG 59.964 38.462 0.00 0.00 44.09 3.95
423 424 7.064609 TCACATGAGAACCTAAAATCGATGAAC 59.935 37.037 0.00 0.00 0.00 3.18
424 425 7.102993 TCACATGAGAACCTAAAATCGATGAA 58.897 34.615 0.00 0.00 0.00 2.57
425 426 6.639563 TCACATGAGAACCTAAAATCGATGA 58.360 36.000 0.00 0.00 0.00 2.92
426 427 6.510799 GCTCACATGAGAACCTAAAATCGATG 60.511 42.308 13.15 0.00 44.74 3.84
427 428 5.525378 GCTCACATGAGAACCTAAAATCGAT 59.475 40.000 13.15 0.00 44.74 3.59
428 429 4.870426 GCTCACATGAGAACCTAAAATCGA 59.130 41.667 13.15 0.00 44.74 3.59
429 430 4.872691 AGCTCACATGAGAACCTAAAATCG 59.127 41.667 13.15 0.00 44.74 3.34
430 431 5.295540 GGAGCTCACATGAGAACCTAAAATC 59.704 44.000 17.19 0.00 44.74 2.17
431 432 5.189180 GGAGCTCACATGAGAACCTAAAAT 58.811 41.667 17.19 0.00 44.74 1.82
432 433 4.565652 GGGAGCTCACATGAGAACCTAAAA 60.566 45.833 17.19 0.00 44.74 1.52
433 434 3.055094 GGGAGCTCACATGAGAACCTAAA 60.055 47.826 17.19 0.00 44.74 1.85
434 435 2.501723 GGGAGCTCACATGAGAACCTAA 59.498 50.000 17.19 0.00 44.74 2.69
435 436 2.111384 GGGAGCTCACATGAGAACCTA 58.889 52.381 17.19 0.00 44.74 3.08
436 437 0.908198 GGGAGCTCACATGAGAACCT 59.092 55.000 17.19 0.32 44.74 3.50
437 438 0.908198 AGGGAGCTCACATGAGAACC 59.092 55.000 20.34 13.10 44.74 3.62
438 439 2.777832 AAGGGAGCTCACATGAGAAC 57.222 50.000 20.34 5.33 44.74 3.01
439 440 3.072915 TCAAAAGGGAGCTCACATGAGAA 59.927 43.478 20.34 0.00 44.74 2.87
440 441 2.639347 TCAAAAGGGAGCTCACATGAGA 59.361 45.455 20.34 7.93 44.74 3.27
441 442 3.008330 CTCAAAAGGGAGCTCACATGAG 58.992 50.000 23.44 23.44 44.75 2.90
442 443 2.290514 CCTCAAAAGGGAGCTCACATGA 60.291 50.000 20.34 17.43 39.21 3.07
443 444 2.089980 CCTCAAAAGGGAGCTCACATG 58.910 52.381 20.34 14.01 39.21 3.21
444 445 1.615384 GCCTCAAAAGGGAGCTCACAT 60.615 52.381 20.34 2.25 43.58 3.21
445 446 0.250901 GCCTCAAAAGGGAGCTCACA 60.251 55.000 20.34 0.00 43.58 3.58
446 447 0.037447 AGCCTCAAAAGGGAGCTCAC 59.963 55.000 17.19 13.15 43.58 3.51
447 448 1.556911 CTAGCCTCAAAAGGGAGCTCA 59.443 52.381 17.19 0.00 43.58 4.26
448 449 1.557371 ACTAGCCTCAAAAGGGAGCTC 59.443 52.381 4.71 4.71 43.58 4.09
449 450 1.557371 GACTAGCCTCAAAAGGGAGCT 59.443 52.381 0.00 0.00 43.58 4.09
450 451 1.279271 TGACTAGCCTCAAAAGGGAGC 59.721 52.381 0.00 0.00 43.58 4.70
451 452 3.008485 ACTTGACTAGCCTCAAAAGGGAG 59.992 47.826 0.00 0.00 43.58 4.30
452 453 2.979678 ACTTGACTAGCCTCAAAAGGGA 59.020 45.455 0.00 0.00 43.58 4.20
453 454 3.077359 CACTTGACTAGCCTCAAAAGGG 58.923 50.000 0.00 0.00 43.58 3.95
454 455 2.485814 GCACTTGACTAGCCTCAAAAGG 59.514 50.000 0.00 0.00 46.44 3.11
455 456 3.406764 AGCACTTGACTAGCCTCAAAAG 58.593 45.455 0.00 0.00 29.66 2.27
456 457 3.492102 AGCACTTGACTAGCCTCAAAA 57.508 42.857 0.00 0.00 29.66 2.44
457 458 3.141398 CAAGCACTTGACTAGCCTCAAA 58.859 45.455 4.31 0.00 42.93 2.69
458 459 2.771089 CAAGCACTTGACTAGCCTCAA 58.229 47.619 4.31 0.00 42.93 3.02
459 460 1.609061 GCAAGCACTTGACTAGCCTCA 60.609 52.381 14.44 0.00 42.93 3.86
460 461 1.082690 GCAAGCACTTGACTAGCCTC 58.917 55.000 14.44 0.00 42.93 4.70
461 462 0.397941 TGCAAGCACTTGACTAGCCT 59.602 50.000 14.44 0.00 42.93 4.58
462 463 1.131883 CATGCAAGCACTTGACTAGCC 59.868 52.381 14.44 0.00 42.93 3.93
463 464 1.808945 ACATGCAAGCACTTGACTAGC 59.191 47.619 14.44 0.00 42.93 3.42
464 465 4.224433 CAAACATGCAAGCACTTGACTAG 58.776 43.478 14.44 3.36 42.93 2.57
465 466 3.004629 CCAAACATGCAAGCACTTGACTA 59.995 43.478 14.44 0.33 42.93 2.59
466 467 2.223876 CCAAACATGCAAGCACTTGACT 60.224 45.455 14.44 0.00 42.93 3.41
467 468 2.129607 CCAAACATGCAAGCACTTGAC 58.870 47.619 14.44 6.27 42.93 3.18
468 469 1.755959 ACCAAACATGCAAGCACTTGA 59.244 42.857 14.44 0.37 42.93 3.02
469 470 2.129607 GACCAAACATGCAAGCACTTG 58.870 47.619 6.01 6.01 43.14 3.16
470 471 2.034124 AGACCAAACATGCAAGCACTT 58.966 42.857 0.00 0.00 0.00 3.16
471 472 1.696063 AGACCAAACATGCAAGCACT 58.304 45.000 0.00 0.00 0.00 4.40
472 473 2.035066 AGAAGACCAAACATGCAAGCAC 59.965 45.455 0.00 0.00 0.00 4.40
473 474 2.309613 AGAAGACCAAACATGCAAGCA 58.690 42.857 0.00 0.00 0.00 3.91
474 475 3.667960 CGTAGAAGACCAAACATGCAAGC 60.668 47.826 0.00 0.00 0.00 4.01
475 476 3.745975 TCGTAGAAGACCAAACATGCAAG 59.254 43.478 0.00 0.00 0.00 4.01
476 477 3.496884 GTCGTAGAAGACCAAACATGCAA 59.503 43.478 0.00 0.00 39.69 4.08
477 478 3.064207 GTCGTAGAAGACCAAACATGCA 58.936 45.455 0.00 0.00 39.69 3.96
478 479 3.326747 AGTCGTAGAAGACCAAACATGC 58.673 45.455 0.00 0.00 41.83 4.06
479 480 5.230942 AGAAGTCGTAGAAGACCAAACATG 58.769 41.667 0.00 0.00 41.83 3.21
480 481 5.470047 AGAAGTCGTAGAAGACCAAACAT 57.530 39.130 0.00 0.00 41.83 2.71
481 482 4.931661 AGAAGTCGTAGAAGACCAAACA 57.068 40.909 0.00 0.00 41.83 2.83
482 483 5.175308 GTGAAGAAGTCGTAGAAGACCAAAC 59.825 44.000 0.00 0.00 41.83 2.93
483 484 5.068723 AGTGAAGAAGTCGTAGAAGACCAAA 59.931 40.000 0.00 0.00 41.83 3.28
484 485 4.583489 AGTGAAGAAGTCGTAGAAGACCAA 59.417 41.667 0.00 0.00 41.83 3.67
485 486 4.142790 AGTGAAGAAGTCGTAGAAGACCA 58.857 43.478 0.00 0.00 41.83 4.02
486 487 4.769859 AGTGAAGAAGTCGTAGAAGACC 57.230 45.455 0.00 0.00 41.83 3.85
487 488 6.484818 ACTAGTGAAGAAGTCGTAGAAGAC 57.515 41.667 0.00 0.00 39.69 3.01
488 489 6.485984 ACAACTAGTGAAGAAGTCGTAGAAGA 59.514 38.462 0.00 0.00 39.69 2.87
489 490 6.670233 ACAACTAGTGAAGAAGTCGTAGAAG 58.330 40.000 0.00 0.00 39.69 2.85
490 491 6.485984 AGACAACTAGTGAAGAAGTCGTAGAA 59.514 38.462 0.00 0.00 39.69 2.10
491 492 5.996513 AGACAACTAGTGAAGAAGTCGTAGA 59.003 40.000 0.00 0.00 37.50 2.59
492 493 6.081049 CAGACAACTAGTGAAGAAGTCGTAG 58.919 44.000 0.00 0.00 37.50 3.51
493 494 5.048921 CCAGACAACTAGTGAAGAAGTCGTA 60.049 44.000 0.00 0.00 37.50 3.43
494 495 4.261656 CCAGACAACTAGTGAAGAAGTCGT 60.262 45.833 0.00 0.00 37.50 4.34
495 496 4.023107 TCCAGACAACTAGTGAAGAAGTCG 60.023 45.833 0.00 0.00 37.50 4.18
496 497 5.241949 TCTCCAGACAACTAGTGAAGAAGTC 59.758 44.000 0.00 0.00 34.74 3.01
497 498 5.141182 TCTCCAGACAACTAGTGAAGAAGT 58.859 41.667 0.00 0.00 0.00 3.01
498 499 5.713792 TCTCCAGACAACTAGTGAAGAAG 57.286 43.478 0.00 0.00 0.00 2.85
499 500 6.479972 TTTCTCCAGACAACTAGTGAAGAA 57.520 37.500 0.00 0.00 0.00 2.52
500 501 6.098409 ACTTTTCTCCAGACAACTAGTGAAGA 59.902 38.462 0.00 0.00 0.00 2.87
501 502 6.284459 ACTTTTCTCCAGACAACTAGTGAAG 58.716 40.000 0.00 0.00 0.00 3.02
502 503 6.235231 ACTTTTCTCCAGACAACTAGTGAA 57.765 37.500 0.00 0.00 0.00 3.18
503 504 5.507482 CGACTTTTCTCCAGACAACTAGTGA 60.507 44.000 0.00 0.00 0.00 3.41
504 505 4.681942 CGACTTTTCTCCAGACAACTAGTG 59.318 45.833 0.00 0.00 0.00 2.74
505 506 4.583489 TCGACTTTTCTCCAGACAACTAGT 59.417 41.667 0.00 0.00 0.00 2.57
506 507 5.048643 TCTCGACTTTTCTCCAGACAACTAG 60.049 44.000 0.00 0.00 0.00 2.57
507 508 4.825634 TCTCGACTTTTCTCCAGACAACTA 59.174 41.667 0.00 0.00 0.00 2.24
508 509 3.637229 TCTCGACTTTTCTCCAGACAACT 59.363 43.478 0.00 0.00 0.00 3.16
509 510 3.978687 TCTCGACTTTTCTCCAGACAAC 58.021 45.455 0.00 0.00 0.00 3.32
510 511 4.873746 ATCTCGACTTTTCTCCAGACAA 57.126 40.909 0.00 0.00 0.00 3.18
511 512 7.556635 TCTTATATCTCGACTTTTCTCCAGACA 59.443 37.037 0.00 0.00 0.00 3.41
512 513 7.932335 TCTTATATCTCGACTTTTCTCCAGAC 58.068 38.462 0.00 0.00 0.00 3.51
513 514 8.698973 ATCTTATATCTCGACTTTTCTCCAGA 57.301 34.615 0.00 0.00 0.00 3.86
516 517 9.796120 CCATATCTTATATCTCGACTTTTCTCC 57.204 37.037 0.00 0.00 0.00 3.71
521 522 9.707957 AGGATCCATATCTTATATCTCGACTTT 57.292 33.333 15.82 0.00 32.29 2.66
522 523 9.349713 GAGGATCCATATCTTATATCTCGACTT 57.650 37.037 15.82 0.00 32.29 3.01
523 524 8.723365 AGAGGATCCATATCTTATATCTCGACT 58.277 37.037 15.82 0.00 33.66 4.18
524 525 8.918202 AGAGGATCCATATCTTATATCTCGAC 57.082 38.462 15.82 0.00 33.66 4.20
526 527 9.785982 TGTAGAGGATCCATATCTTATATCTCG 57.214 37.037 15.82 0.00 33.66 4.04
555 556 8.480133 AGTAGATGAGGTCGTATAGGATTTTT 57.520 34.615 0.00 0.00 0.00 1.94
556 557 9.012161 GTAGTAGATGAGGTCGTATAGGATTTT 57.988 37.037 0.00 0.00 0.00 1.82
557 558 7.333921 CGTAGTAGATGAGGTCGTATAGGATTT 59.666 40.741 0.00 0.00 0.00 2.17
558 559 6.817641 CGTAGTAGATGAGGTCGTATAGGATT 59.182 42.308 0.00 0.00 0.00 3.01
559 560 6.339730 CGTAGTAGATGAGGTCGTATAGGAT 58.660 44.000 0.00 0.00 0.00 3.24
560 561 5.337089 CCGTAGTAGATGAGGTCGTATAGGA 60.337 48.000 0.00 0.00 0.00 2.94
561 562 4.869297 CCGTAGTAGATGAGGTCGTATAGG 59.131 50.000 0.00 0.00 0.00 2.57
562 563 5.718146 TCCGTAGTAGATGAGGTCGTATAG 58.282 45.833 0.00 0.00 0.00 1.31
563 564 5.337089 CCTCCGTAGTAGATGAGGTCGTATA 60.337 48.000 0.00 0.00 39.64 1.47
564 565 4.563168 CCTCCGTAGTAGATGAGGTCGTAT 60.563 50.000 0.00 0.00 39.64 3.06
565 566 3.244009 CCTCCGTAGTAGATGAGGTCGTA 60.244 52.174 0.00 0.00 39.64 3.43
566 567 2.485124 CCTCCGTAGTAGATGAGGTCGT 60.485 54.545 0.00 0.00 39.64 4.34
567 568 2.144730 CCTCCGTAGTAGATGAGGTCG 58.855 57.143 0.00 0.00 39.64 4.79
568 569 3.488778 TCCTCCGTAGTAGATGAGGTC 57.511 52.381 0.00 0.00 43.91 3.85
569 570 4.456662 AATCCTCCGTAGTAGATGAGGT 57.543 45.455 0.00 0.00 43.91 3.85
570 571 5.793030 AAAATCCTCCGTAGTAGATGAGG 57.207 43.478 0.00 0.00 44.69 3.86
571 572 7.329717 GCATTAAAATCCTCCGTAGTAGATGAG 59.670 40.741 0.00 0.00 0.00 2.90
572 573 7.152645 GCATTAAAATCCTCCGTAGTAGATGA 58.847 38.462 0.00 0.00 0.00 2.92
573 574 6.929049 TGCATTAAAATCCTCCGTAGTAGATG 59.071 38.462 0.00 0.00 0.00 2.90
574 575 7.062749 TGCATTAAAATCCTCCGTAGTAGAT 57.937 36.000 0.00 0.00 0.00 1.98
575 576 6.474140 TGCATTAAAATCCTCCGTAGTAGA 57.526 37.500 0.00 0.00 0.00 2.59
576 577 7.155328 AGATGCATTAAAATCCTCCGTAGTAG 58.845 38.462 0.00 0.00 0.00 2.57
577 578 7.062749 AGATGCATTAAAATCCTCCGTAGTA 57.937 36.000 0.00 0.00 0.00 1.82
578 579 5.930135 AGATGCATTAAAATCCTCCGTAGT 58.070 37.500 0.00 0.00 0.00 2.73
579 580 6.867662 AAGATGCATTAAAATCCTCCGTAG 57.132 37.500 0.00 0.00 0.00 3.51
580 581 7.639113 AAAAGATGCATTAAAATCCTCCGTA 57.361 32.000 0.00 0.00 0.00 4.02
581 582 6.530019 AAAAGATGCATTAAAATCCTCCGT 57.470 33.333 0.00 0.00 0.00 4.69
582 583 8.807581 GTTTAAAAGATGCATTAAAATCCTCCG 58.192 33.333 0.00 0.00 33.99 4.63
583 584 9.875691 AGTTTAAAAGATGCATTAAAATCCTCC 57.124 29.630 0.00 0.00 33.99 4.30
594 595 9.101655 GCCATGATAAAAGTTTAAAAGATGCAT 57.898 29.630 0.00 0.00 0.00 3.96
595 596 7.548780 GGCCATGATAAAAGTTTAAAAGATGCA 59.451 33.333 0.00 0.00 0.00 3.96
596 597 7.011389 GGGCCATGATAAAAGTTTAAAAGATGC 59.989 37.037 4.39 0.00 0.00 3.91
597 598 8.260114 AGGGCCATGATAAAAGTTTAAAAGATG 58.740 33.333 6.18 0.00 0.00 2.90
598 599 8.379428 AGGGCCATGATAAAAGTTTAAAAGAT 57.621 30.769 6.18 0.00 0.00 2.40
599 600 7.790782 AGGGCCATGATAAAAGTTTAAAAGA 57.209 32.000 6.18 0.00 0.00 2.52
600 601 8.846943 AAAGGGCCATGATAAAAGTTTAAAAG 57.153 30.769 6.18 0.00 0.00 2.27
605 606 9.806448 AAAAATAAAGGGCCATGATAAAAGTTT 57.194 25.926 6.18 0.00 0.00 2.66
606 607 9.448438 GAAAAATAAAGGGCCATGATAAAAGTT 57.552 29.630 6.18 0.00 0.00 2.66
607 608 8.825774 AGAAAAATAAAGGGCCATGATAAAAGT 58.174 29.630 6.18 0.00 0.00 2.66
612 613 9.881773 AGAATAGAAAAATAAAGGGCCATGATA 57.118 29.630 6.18 0.00 0.00 2.15
613 614 8.788238 AGAATAGAAAAATAAAGGGCCATGAT 57.212 30.769 6.18 0.00 0.00 2.45
614 615 8.477256 CAAGAATAGAAAAATAAAGGGCCATGA 58.523 33.333 6.18 0.00 0.00 3.07
615 616 8.477256 TCAAGAATAGAAAAATAAAGGGCCATG 58.523 33.333 6.18 0.00 0.00 3.66
616 617 8.608185 TCAAGAATAGAAAAATAAAGGGCCAT 57.392 30.769 6.18 0.00 0.00 4.40
617 618 8.608185 ATCAAGAATAGAAAAATAAAGGGCCA 57.392 30.769 6.18 0.00 0.00 5.36
618 619 8.918116 AGATCAAGAATAGAAAAATAAAGGGCC 58.082 33.333 0.00 0.00 0.00 5.80
635 636 9.013229 ACTGCACAAAATACATTAGATCAAGAA 57.987 29.630 0.00 0.00 0.00 2.52
636 637 8.565896 ACTGCACAAAATACATTAGATCAAGA 57.434 30.769 0.00 0.00 0.00 3.02
790 814 3.843893 TTGTCCATGGATCATCGTCAT 57.156 42.857 19.62 0.00 0.00 3.06
849 895 0.965866 ATGCGACCGGAGAGAGACAA 60.966 55.000 9.46 0.00 0.00 3.18
880 926 7.141363 AGATAAACAATTTCAGTTGAGCACAC 58.859 34.615 0.00 0.00 33.37 3.82
881 927 7.275888 AGATAAACAATTTCAGTTGAGCACA 57.724 32.000 0.00 0.00 33.37 4.57
997 1061 3.197790 CGGAGCAGTTGCCATCGG 61.198 66.667 0.00 0.00 43.38 4.18
1049 1118 0.460987 GACGCAAGAGGAGGACATGG 60.461 60.000 0.00 0.00 43.62 3.66
1209 1278 0.883153 TGCCGTTGTAGTAGAAGCGA 59.117 50.000 0.00 0.00 0.00 4.93
1212 1281 1.625616 CCGTGCCGTTGTAGTAGAAG 58.374 55.000 0.00 0.00 0.00 2.85
1260 1329 1.300156 GGCATAGCACGCGATGAGA 60.300 57.895 15.93 0.00 32.03 3.27
1713 7595 0.108138 CGTAGCAGCTGTAGCCCTTT 60.108 55.000 16.64 0.00 43.38 3.11
1867 7773 6.761714 AGGAAGTAATAATAGCACCGAAGTTG 59.238 38.462 0.00 0.00 0.00 3.16
1930 7848 4.630505 CCATCAATGAGATATCTTCGGCAG 59.369 45.833 6.70 0.00 34.43 4.85
2144 8097 3.978672 ACTCATCTCCCAATGGATCATCA 59.021 43.478 0.00 0.00 40.80 3.07
2165 8121 1.079336 CCCGGTCCCTTTCTCGAAC 60.079 63.158 0.00 0.00 0.00 3.95
2203 8159 4.488136 TGGCGGCGGCAAGATCAT 62.488 61.111 34.45 0.00 42.47 2.45
2330 8286 3.500635 CTCCCCTGCTTGGAGGTT 58.499 61.111 7.39 0.00 44.73 3.50
2450 8406 1.069513 CCGTGGGGCATAAGATCGTAA 59.930 52.381 0.00 0.00 0.00 3.18
2870 8852 1.756430 AGACATCAGACTCAGCGCTA 58.244 50.000 10.99 0.00 0.00 4.26
3001 8989 1.299976 GCATCAAGGGTCCTTCCGT 59.700 57.895 0.00 0.00 37.00 4.69
3248 9236 3.564053 TGCATAATCTGTCATCTGCCA 57.436 42.857 0.00 0.00 0.00 4.92
3370 9358 2.069273 ACGCAGTTGATTGCACTACTC 58.931 47.619 0.00 0.00 37.78 2.59
3372 9360 1.725931 GCACGCAGTTGATTGCACTAC 60.726 52.381 0.00 0.00 41.61 2.73
3467 9455 0.974383 TTCCCGTCCTTCTCCTTGTC 59.026 55.000 0.00 0.00 0.00 3.18
3540 9528 0.673956 GTCCTTCTTGGGCGTTCTCC 60.674 60.000 0.00 0.00 36.20 3.71
3545 9533 1.597027 CGTTGTCCTTCTTGGGCGT 60.597 57.895 0.00 0.00 45.26 5.68
3546 9534 1.291877 CTCGTTGTCCTTCTTGGGCG 61.292 60.000 0.00 0.00 45.26 6.13
3600 9588 5.134339 ACCAATTTATCATTGCCTCTAGGGA 59.866 40.000 0.00 0.00 37.23 4.20
3662 9650 7.719193 TCCGATCAATAAAATTCTAGCATGGAA 59.281 33.333 0.00 0.00 40.84 3.53
3754 9743 3.879295 CCATAGCCATCTTTGATCAACGT 59.121 43.478 7.89 0.00 0.00 3.99
3801 9790 4.821260 TGATGTGATCCCGTTATCAAATGG 59.179 41.667 4.98 0.00 40.91 3.16
3906 9895 6.484643 GTCATAGGAACATATGCTTGACATGT 59.515 38.462 0.00 0.00 40.06 3.21
4031 10020 1.543429 CCAACTCAACAGACACCCTCC 60.543 57.143 0.00 0.00 0.00 4.30
4108 10098 8.765219 AGCTTATTGTGATGTTGTATTATCGAC 58.235 33.333 0.00 0.00 0.00 4.20
4178 10168 4.664188 GGCAAGTCTCTTACTCGTTCTAG 58.336 47.826 0.00 0.00 37.50 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.