Multiple sequence alignment - TraesCS4B01G052700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G052700 chr4B 100.000 2600 0 0 1 2600 41557604 41555005 0.000000e+00 4802.0
1 TraesCS4B01G052700 chr4B 97.368 38 1 0 318 355 88230358 88230395 6.010000e-07 65.8
2 TraesCS4B01G052700 chr4D 93.771 1493 53 10 717 2208 29026132 29024679 0.000000e+00 2206.0
3 TraesCS4B01G052700 chr4D 85.303 347 44 6 358 703 474690975 474691315 4.120000e-93 351.0
4 TraesCS4B01G052700 chr4D 84.211 266 26 7 2305 2562 29024603 29024346 7.190000e-61 244.0
5 TraesCS4B01G052700 chr4A 93.737 1405 54 19 1025 2410 574520716 574522105 0.000000e+00 2076.0
6 TraesCS4B01G052700 chr4A 91.585 511 16 7 2114 2598 574522105 574522614 0.000000e+00 680.0
7 TraesCS4B01G052700 chr4A 90.041 241 9 6 742 981 574520123 574520349 5.440000e-77 298.0
8 TraesCS4B01G052700 chr2B 90.258 349 26 2 362 703 459249343 459248996 1.420000e-122 449.0
9 TraesCS4B01G052700 chr2B 86.158 354 44 5 356 708 366832025 366831676 6.790000e-101 377.0
10 TraesCS4B01G052700 chr2B 92.727 165 12 0 543 707 33847490 33847654 3.340000e-59 239.0
11 TraesCS4B01G052700 chr2B 100.000 38 0 0 318 355 449466830 449466793 1.290000e-08 71.3
12 TraesCS4B01G052700 chr7D 97.436 195 5 0 355 549 211868477 211868283 1.490000e-87 333.0
13 TraesCS4B01G052700 chr7D 97.222 36 1 0 113 148 538817541 538817576 7.770000e-06 62.1
14 TraesCS4B01G052700 chr7D 100.000 32 0 0 113 144 16787687 16787718 2.790000e-05 60.2
15 TraesCS4B01G052700 chr6D 97.436 195 5 0 355 549 345048436 345048630 1.490000e-87 333.0
16 TraesCS4B01G052700 chr6D 94.340 159 8 1 549 707 454630805 454630648 2.590000e-60 243.0
17 TraesCS4B01G052700 chr6D 96.970 33 0 1 111 143 419739465 419739434 1.000000e-03 54.7
18 TraesCS4B01G052700 chr3D 97.436 195 5 0 355 549 12368779 12368973 1.490000e-87 333.0
19 TraesCS4B01G052700 chr5A 97.423 194 5 0 356 549 660883183 660883376 5.360000e-87 331.0
20 TraesCS4B01G052700 chr3A 97.423 194 5 0 356 549 710709542 710709349 5.360000e-87 331.0
21 TraesCS4B01G052700 chr3A 97.059 34 1 0 115 148 708105203 708105236 1.000000e-04 58.4
22 TraesCS4B01G052700 chr7B 96.000 200 7 1 351 549 697805791 697805592 8.970000e-85 324.0
23 TraesCS4B01G052700 chr7A 95.425 153 7 0 549 701 678930530 678930378 7.190000e-61 244.0
24 TraesCS4B01G052700 chr7A 91.111 45 3 1 113 157 30035902 30035945 2.790000e-05 60.2
25 TraesCS4B01G052700 chr5B 93.210 162 11 0 549 710 616440370 616440209 3.340000e-59 239.0
26 TraesCS4B01G052700 chr1A 91.379 174 11 4 549 718 499932433 499932260 4.330000e-58 235.0
27 TraesCS4B01G052700 chr1A 94.737 38 2 0 318 355 108794945 108794908 2.790000e-05 60.2
28 TraesCS4B01G052700 chr3B 90.164 183 13 3 550 729 4554738 4554558 1.560000e-57 233.0
29 TraesCS4B01G052700 chr2D 97.059 34 1 0 116 149 355631210 355631243 1.000000e-04 58.4
30 TraesCS4B01G052700 chr1B 94.595 37 2 0 319 355 389571880 389571844 1.000000e-04 58.4
31 TraesCS4B01G052700 chr1B 100.000 31 0 0 113 143 684909728 684909758 1.000000e-04 58.4
32 TraesCS4B01G052700 chr6B 100.000 28 0 0 116 143 632779247 632779220 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G052700 chr4B 41555005 41557604 2599 True 4802 4802 100.000000 1 2600 1 chr4B.!!$R1 2599
1 TraesCS4B01G052700 chr4D 29024346 29026132 1786 True 1225 2206 88.991000 717 2562 2 chr4D.!!$R1 1845
2 TraesCS4B01G052700 chr4A 574520123 574522614 2491 False 1018 2076 91.787667 742 2598 3 chr4A.!!$F1 1856

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
434 435 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.0 0.0 0.0 0.00 4.73 F
552 553 0.036952 AAGATGATATGCCGGCGAGG 60.037 55.0 23.9 0.0 44.97 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1506 1836 0.321122 CGAGCAGCTTCTGGAGGTTT 60.321 55.000 0.00 0.00 32.70 3.27 R
1730 2065 1.634973 TCAGTGGATCCAGGATGCAAA 59.365 47.619 24.36 10.93 41.66 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 9.947433 AATTTTGCATGGAGATTCATAAAAAGA 57.053 25.926 0.00 0.00 31.48 2.52
49 50 9.947433 ATTTTGCATGGAGATTCATAAAAAGAA 57.053 25.926 0.00 0.00 31.48 2.52
50 51 9.775854 TTTTGCATGGAGATTCATAAAAAGAAA 57.224 25.926 0.00 0.00 0.00 2.52
51 52 9.947433 TTTGCATGGAGATTCATAAAAAGAAAT 57.053 25.926 0.00 0.00 0.00 2.17
95 96 8.969260 TTCTCCTTACGTACTATATCACTTGA 57.031 34.615 0.00 0.00 0.00 3.02
96 97 8.375608 TCTCCTTACGTACTATATCACTTGAC 57.624 38.462 0.00 0.00 0.00 3.18
97 98 8.209584 TCTCCTTACGTACTATATCACTTGACT 58.790 37.037 0.00 0.00 0.00 3.41
98 99 8.151141 TCCTTACGTACTATATCACTTGACTG 57.849 38.462 0.00 0.00 0.00 3.51
99 100 7.772292 TCCTTACGTACTATATCACTTGACTGT 59.228 37.037 0.00 0.00 0.00 3.55
100 101 8.068977 CCTTACGTACTATATCACTTGACTGTC 58.931 40.741 0.00 0.00 0.00 3.51
101 102 6.374565 ACGTACTATATCACTTGACTGTCC 57.625 41.667 5.17 0.00 0.00 4.02
102 103 5.298777 ACGTACTATATCACTTGACTGTCCC 59.701 44.000 5.17 0.00 0.00 4.46
103 104 5.531659 CGTACTATATCACTTGACTGTCCCT 59.468 44.000 5.17 0.00 0.00 4.20
104 105 6.293516 CGTACTATATCACTTGACTGTCCCTC 60.294 46.154 5.17 0.00 0.00 4.30
105 106 5.519808 ACTATATCACTTGACTGTCCCTCA 58.480 41.667 5.17 0.00 0.00 3.86
106 107 5.958380 ACTATATCACTTGACTGTCCCTCAA 59.042 40.000 5.17 0.00 0.00 3.02
107 108 5.762179 ATATCACTTGACTGTCCCTCAAA 57.238 39.130 5.17 0.00 0.00 2.69
108 109 3.924114 TCACTTGACTGTCCCTCAAAA 57.076 42.857 5.17 0.00 0.00 2.44
109 110 4.229304 TCACTTGACTGTCCCTCAAAAA 57.771 40.909 5.17 0.00 0.00 1.94
134 135 7.811117 AGTACTATATCACTTGACTGAGACC 57.189 40.000 0.00 0.00 0.00 3.85
135 136 7.579105 AGTACTATATCACTTGACTGAGACCT 58.421 38.462 0.00 0.00 0.00 3.85
136 137 8.715842 AGTACTATATCACTTGACTGAGACCTA 58.284 37.037 0.00 0.00 0.00 3.08
137 138 8.995220 GTACTATATCACTTGACTGAGACCTAG 58.005 40.741 0.00 0.00 0.00 3.02
138 139 5.782893 ATATCACTTGACTGAGACCTAGC 57.217 43.478 0.00 0.00 0.00 3.42
139 140 2.171840 TCACTTGACTGAGACCTAGCC 58.828 52.381 0.00 0.00 0.00 3.93
140 141 1.895798 CACTTGACTGAGACCTAGCCA 59.104 52.381 0.00 0.00 0.00 4.75
141 142 1.896465 ACTTGACTGAGACCTAGCCAC 59.104 52.381 0.00 0.00 0.00 5.01
142 143 1.895798 CTTGACTGAGACCTAGCCACA 59.104 52.381 0.00 0.00 0.00 4.17
143 144 1.257743 TGACTGAGACCTAGCCACAC 58.742 55.000 0.00 0.00 0.00 3.82
144 145 1.203063 TGACTGAGACCTAGCCACACT 60.203 52.381 0.00 0.00 0.00 3.55
145 146 1.474879 GACTGAGACCTAGCCACACTC 59.525 57.143 0.00 0.00 0.00 3.51
146 147 1.076350 ACTGAGACCTAGCCACACTCT 59.924 52.381 0.00 0.00 0.00 3.24
147 148 2.309162 ACTGAGACCTAGCCACACTCTA 59.691 50.000 0.00 0.00 0.00 2.43
148 149 3.245300 ACTGAGACCTAGCCACACTCTAA 60.245 47.826 0.00 0.00 0.00 2.10
149 150 3.764434 CTGAGACCTAGCCACACTCTAAA 59.236 47.826 0.00 0.00 0.00 1.85
150 151 4.157246 TGAGACCTAGCCACACTCTAAAA 58.843 43.478 0.00 0.00 0.00 1.52
151 152 4.591498 TGAGACCTAGCCACACTCTAAAAA 59.409 41.667 0.00 0.00 0.00 1.94
179 180 6.310197 TGTAACAAGTTTTTGTGCAAAATGC 58.690 32.000 10.39 7.39 46.54 3.56
180 181 5.368256 AACAAGTTTTTGTGCAAAATGCA 57.632 30.435 10.39 0.00 46.54 3.96
202 203 5.698832 CATCGATGCAGTTAACTTTTTCCA 58.301 37.500 13.37 0.00 0.00 3.53
203 204 5.957842 TCGATGCAGTTAACTTTTTCCAT 57.042 34.783 5.07 4.07 0.00 3.41
204 205 5.698832 TCGATGCAGTTAACTTTTTCCATG 58.301 37.500 5.07 0.00 0.00 3.66
205 206 5.471797 TCGATGCAGTTAACTTTTTCCATGA 59.528 36.000 5.07 2.99 0.00 3.07
206 207 6.016693 TCGATGCAGTTAACTTTTTCCATGAA 60.017 34.615 5.07 0.00 0.00 2.57
207 208 6.808212 CGATGCAGTTAACTTTTTCCATGAAT 59.192 34.615 5.07 0.00 0.00 2.57
208 209 7.967854 CGATGCAGTTAACTTTTTCCATGAATA 59.032 33.333 5.07 0.00 0.00 1.75
209 210 9.638239 GATGCAGTTAACTTTTTCCATGAATAA 57.362 29.630 5.07 0.00 0.00 1.40
210 211 9.995003 ATGCAGTTAACTTTTTCCATGAATAAA 57.005 25.926 5.07 0.00 0.00 1.40
211 212 9.823647 TGCAGTTAACTTTTTCCATGAATAAAA 57.176 25.926 5.07 0.00 0.00 1.52
219 220 9.492973 ACTTTTTCCATGAATAAAAACATGAGG 57.507 29.630 0.00 0.00 44.28 3.86
220 221 8.845413 TTTTTCCATGAATAAAAACATGAGGG 57.155 30.769 0.00 0.00 44.28 4.30
221 222 7.552050 TTTCCATGAATAAAAACATGAGGGT 57.448 32.000 0.00 0.00 44.28 4.34
222 223 6.528537 TCCATGAATAAAAACATGAGGGTG 57.471 37.500 0.00 0.00 44.28 4.61
223 224 6.015918 TCCATGAATAAAAACATGAGGGTGT 58.984 36.000 0.00 0.00 44.28 4.16
224 225 6.496565 TCCATGAATAAAAACATGAGGGTGTT 59.503 34.615 0.00 0.00 44.28 3.32
254 255 3.921119 AAATACGTCGTGTACAGTCCA 57.079 42.857 8.47 0.00 35.44 4.02
255 256 2.907910 ATACGTCGTGTACAGTCCAC 57.092 50.000 8.47 0.00 35.44 4.02
256 257 0.874390 TACGTCGTGTACAGTCCACC 59.126 55.000 8.47 0.00 0.00 4.61
257 258 1.441515 CGTCGTGTACAGTCCACCG 60.442 63.158 0.00 0.00 0.00 4.94
258 259 1.731969 GTCGTGTACAGTCCACCGC 60.732 63.158 0.00 0.00 0.00 5.68
259 260 1.900016 TCGTGTACAGTCCACCGCT 60.900 57.895 0.00 0.00 0.00 5.52
260 261 1.443872 CGTGTACAGTCCACCGCTC 60.444 63.158 0.00 0.00 0.00 5.03
261 262 1.663739 GTGTACAGTCCACCGCTCA 59.336 57.895 0.00 0.00 0.00 4.26
262 263 0.666577 GTGTACAGTCCACCGCTCAC 60.667 60.000 0.00 0.00 0.00 3.51
263 264 0.826256 TGTACAGTCCACCGCTCACT 60.826 55.000 0.00 0.00 0.00 3.41
264 265 1.171308 GTACAGTCCACCGCTCACTA 58.829 55.000 0.00 0.00 0.00 2.74
265 266 1.542915 GTACAGTCCACCGCTCACTAA 59.457 52.381 0.00 0.00 0.00 2.24
266 267 0.317479 ACAGTCCACCGCTCACTAAC 59.683 55.000 0.00 0.00 0.00 2.34
267 268 0.317160 CAGTCCACCGCTCACTAACA 59.683 55.000 0.00 0.00 0.00 2.41
268 269 0.603569 AGTCCACCGCTCACTAACAG 59.396 55.000 0.00 0.00 0.00 3.16
269 270 0.601558 GTCCACCGCTCACTAACAGA 59.398 55.000 0.00 0.00 0.00 3.41
270 271 1.204941 GTCCACCGCTCACTAACAGAT 59.795 52.381 0.00 0.00 0.00 2.90
271 272 1.204704 TCCACCGCTCACTAACAGATG 59.795 52.381 0.00 0.00 0.00 2.90
272 273 1.204704 CCACCGCTCACTAACAGATGA 59.795 52.381 0.00 0.00 0.00 2.92
273 274 2.534298 CACCGCTCACTAACAGATGAG 58.466 52.381 0.00 0.00 44.37 2.90
281 282 6.641169 CTCACTAACAGATGAGCCTATACA 57.359 41.667 0.00 0.00 36.22 2.29
282 283 6.392625 TCACTAACAGATGAGCCTATACAC 57.607 41.667 0.00 0.00 0.00 2.90
283 284 5.891551 TCACTAACAGATGAGCCTATACACA 59.108 40.000 0.00 0.00 0.00 3.72
284 285 6.551227 TCACTAACAGATGAGCCTATACACAT 59.449 38.462 0.00 0.00 0.00 3.21
285 286 6.644181 CACTAACAGATGAGCCTATACACATG 59.356 42.308 0.00 0.00 0.00 3.21
286 287 4.613925 ACAGATGAGCCTATACACATGG 57.386 45.455 0.00 0.00 0.00 3.66
287 288 4.226384 ACAGATGAGCCTATACACATGGA 58.774 43.478 0.00 0.00 0.00 3.41
288 289 4.842948 ACAGATGAGCCTATACACATGGAT 59.157 41.667 0.00 0.00 0.00 3.41
289 290 6.019108 ACAGATGAGCCTATACACATGGATA 58.981 40.000 0.00 0.00 0.00 2.59
290 291 6.071108 ACAGATGAGCCTATACACATGGATAC 60.071 42.308 0.00 0.00 0.00 2.24
291 292 4.783764 TGAGCCTATACACATGGATACG 57.216 45.455 0.00 0.00 42.51 3.06
292 293 3.056821 TGAGCCTATACACATGGATACGC 60.057 47.826 0.00 0.00 42.51 4.42
293 294 2.233922 AGCCTATACACATGGATACGCC 59.766 50.000 0.00 0.00 42.51 5.68
302 303 3.678921 TGGATACGCCAGCATACAC 57.321 52.632 0.00 0.00 43.33 2.90
303 304 0.249280 TGGATACGCCAGCATACACG 60.249 55.000 0.00 0.00 43.33 4.49
304 305 0.249322 GGATACGCCAGCATACACGT 60.249 55.000 0.00 0.00 42.22 4.49
305 306 1.001048 GGATACGCCAGCATACACGTA 60.001 52.381 0.00 0.00 44.16 3.57
306 307 2.316792 GATACGCCAGCATACACGTAG 58.683 52.381 0.00 0.00 43.39 3.51
307 308 0.382873 TACGCCAGCATACACGTAGG 59.617 55.000 0.00 0.00 39.78 3.18
308 309 2.237751 CGCCAGCATACACGTAGGC 61.238 63.158 5.74 5.74 42.54 3.93
309 310 1.887707 GCCAGCATACACGTAGGCC 60.888 63.158 10.00 0.00 43.15 5.19
310 311 1.520192 CCAGCATACACGTAGGCCA 59.480 57.895 5.01 0.00 43.15 5.36
311 312 0.530650 CCAGCATACACGTAGGCCAG 60.531 60.000 5.01 0.00 43.15 4.85
312 313 0.175760 CAGCATACACGTAGGCCAGT 59.824 55.000 5.01 0.00 43.15 4.00
313 314 1.407618 CAGCATACACGTAGGCCAGTA 59.592 52.381 5.01 0.00 43.15 2.74
314 315 1.681793 AGCATACACGTAGGCCAGTAG 59.318 52.381 5.01 0.00 43.15 2.57
315 316 1.679680 GCATACACGTAGGCCAGTAGA 59.320 52.381 5.01 0.00 36.92 2.59
316 317 2.100252 GCATACACGTAGGCCAGTAGAA 59.900 50.000 5.01 0.00 36.92 2.10
317 318 3.795826 GCATACACGTAGGCCAGTAGAAG 60.796 52.174 5.01 0.00 36.92 2.85
318 319 2.211250 ACACGTAGGCCAGTAGAAGA 57.789 50.000 5.01 0.00 0.00 2.87
319 320 1.817447 ACACGTAGGCCAGTAGAAGAC 59.183 52.381 5.01 0.00 0.00 3.01
320 321 1.134560 CACGTAGGCCAGTAGAAGACC 59.865 57.143 5.01 0.00 0.00 3.85
321 322 1.272313 ACGTAGGCCAGTAGAAGACCA 60.272 52.381 5.01 0.00 0.00 4.02
322 323 1.134560 CGTAGGCCAGTAGAAGACCAC 59.865 57.143 5.01 0.00 0.00 4.16
323 324 2.176889 GTAGGCCAGTAGAAGACCACA 58.823 52.381 5.01 0.00 0.00 4.17
324 325 1.729586 AGGCCAGTAGAAGACCACAA 58.270 50.000 5.01 0.00 0.00 3.33
325 326 2.054799 AGGCCAGTAGAAGACCACAAA 58.945 47.619 5.01 0.00 0.00 2.83
326 327 2.441750 AGGCCAGTAGAAGACCACAAAA 59.558 45.455 5.01 0.00 0.00 2.44
327 328 2.552743 GGCCAGTAGAAGACCACAAAAC 59.447 50.000 0.00 0.00 0.00 2.43
328 329 2.552743 GCCAGTAGAAGACCACAAAACC 59.447 50.000 0.00 0.00 0.00 3.27
329 330 3.815809 CCAGTAGAAGACCACAAAACCA 58.184 45.455 0.00 0.00 0.00 3.67
330 331 4.398319 CCAGTAGAAGACCACAAAACCAT 58.602 43.478 0.00 0.00 0.00 3.55
331 332 5.556915 CCAGTAGAAGACCACAAAACCATA 58.443 41.667 0.00 0.00 0.00 2.74
332 333 6.180472 CCAGTAGAAGACCACAAAACCATAT 58.820 40.000 0.00 0.00 0.00 1.78
333 334 6.659242 CCAGTAGAAGACCACAAAACCATATT 59.341 38.462 0.00 0.00 0.00 1.28
334 335 7.176690 CCAGTAGAAGACCACAAAACCATATTT 59.823 37.037 0.00 0.00 0.00 1.40
335 336 8.576442 CAGTAGAAGACCACAAAACCATATTTT 58.424 33.333 0.00 0.00 0.00 1.82
336 337 9.143155 AGTAGAAGACCACAAAACCATATTTTT 57.857 29.630 0.00 0.00 0.00 1.94
356 357 7.617533 TTTTTAAAGTTCTAGCATCAAACGC 57.382 32.000 0.00 0.00 0.00 4.84
357 358 3.455619 AAAGTTCTAGCATCAAACGCG 57.544 42.857 3.53 3.53 0.00 6.01
358 359 2.363788 AGTTCTAGCATCAAACGCGA 57.636 45.000 15.93 0.00 0.00 5.87
359 360 2.683968 AGTTCTAGCATCAAACGCGAA 58.316 42.857 15.93 0.00 0.00 4.70
360 361 2.412089 AGTTCTAGCATCAAACGCGAAC 59.588 45.455 15.93 1.32 32.91 3.95
361 362 1.355971 TCTAGCATCAAACGCGAACC 58.644 50.000 15.93 0.00 0.00 3.62
362 363 1.075542 CTAGCATCAAACGCGAACCA 58.924 50.000 15.93 0.00 0.00 3.67
363 364 1.463056 CTAGCATCAAACGCGAACCAA 59.537 47.619 15.93 0.00 0.00 3.67
364 365 0.040425 AGCATCAAACGCGAACCAAC 60.040 50.000 15.93 0.00 0.00 3.77
365 366 1.001745 GCATCAAACGCGAACCAACC 61.002 55.000 15.93 0.00 0.00 3.77
366 367 0.591170 CATCAAACGCGAACCAACCT 59.409 50.000 15.93 0.00 0.00 3.50
367 368 0.591170 ATCAAACGCGAACCAACCTG 59.409 50.000 15.93 0.00 0.00 4.00
368 369 0.745128 TCAAACGCGAACCAACCTGT 60.745 50.000 15.93 0.00 0.00 4.00
369 370 0.591236 CAAACGCGAACCAACCTGTG 60.591 55.000 15.93 0.00 0.00 3.66
383 384 3.703001 ACCTGTGGTTGAGATGGTTAG 57.297 47.619 0.00 0.00 27.29 2.34
384 385 2.305927 ACCTGTGGTTGAGATGGTTAGG 59.694 50.000 0.00 0.00 27.29 2.69
385 386 2.305927 CCTGTGGTTGAGATGGTTAGGT 59.694 50.000 0.00 0.00 0.00 3.08
386 387 3.338249 CTGTGGTTGAGATGGTTAGGTG 58.662 50.000 0.00 0.00 0.00 4.00
387 388 2.039746 TGTGGTTGAGATGGTTAGGTGG 59.960 50.000 0.00 0.00 0.00 4.61
388 389 2.304761 GTGGTTGAGATGGTTAGGTGGA 59.695 50.000 0.00 0.00 0.00 4.02
389 390 2.304761 TGGTTGAGATGGTTAGGTGGAC 59.695 50.000 0.00 0.00 0.00 4.02
390 391 2.304761 GGTTGAGATGGTTAGGTGGACA 59.695 50.000 0.00 0.00 0.00 4.02
391 392 3.244770 GGTTGAGATGGTTAGGTGGACAA 60.245 47.826 0.00 0.00 0.00 3.18
392 393 4.567747 GGTTGAGATGGTTAGGTGGACAAT 60.568 45.833 0.00 0.00 0.00 2.71
393 394 4.220693 TGAGATGGTTAGGTGGACAATG 57.779 45.455 0.00 0.00 0.00 2.82
394 395 3.054434 TGAGATGGTTAGGTGGACAATGG 60.054 47.826 0.00 0.00 0.00 3.16
395 396 2.919602 AGATGGTTAGGTGGACAATGGT 59.080 45.455 0.00 0.00 0.00 3.55
396 397 4.108570 AGATGGTTAGGTGGACAATGGTA 58.891 43.478 0.00 0.00 0.00 3.25
397 398 4.726825 AGATGGTTAGGTGGACAATGGTAT 59.273 41.667 0.00 0.00 0.00 2.73
398 399 4.497291 TGGTTAGGTGGACAATGGTATC 57.503 45.455 0.00 0.00 0.00 2.24
399 400 3.201266 TGGTTAGGTGGACAATGGTATCC 59.799 47.826 0.00 0.00 35.37 2.59
400 401 3.434596 GGTTAGGTGGACAATGGTATCCC 60.435 52.174 0.00 0.00 33.69 3.85
401 402 1.222567 AGGTGGACAATGGTATCCCC 58.777 55.000 0.00 0.00 33.69 4.81
409 410 3.844063 TGGTATCCCCAACCCACC 58.156 61.111 0.00 0.00 41.50 4.61
410 411 1.151565 TGGTATCCCCAACCCACCA 60.152 57.895 0.00 0.00 41.50 4.17
411 412 1.211567 TGGTATCCCCAACCCACCAG 61.212 60.000 0.00 0.00 41.50 4.00
412 413 1.613061 GTATCCCCAACCCACCAGG 59.387 63.158 0.00 0.00 43.78 4.45
428 429 3.363787 AGGGTTCAAATCCTGGTGC 57.636 52.632 0.00 0.00 38.36 5.01
429 430 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
430 431 1.177401 GGGTTCAAATCCTGGTGCTC 58.823 55.000 0.00 0.00 0.00 4.26
431 432 0.804989 GGTTCAAATCCTGGTGCTCG 59.195 55.000 0.00 0.00 0.00 5.03
432 433 0.169009 GTTCAAATCCTGGTGCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
433 434 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
434 435 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
435 436 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
436 437 2.016318 CAAATCCTGGTGCTCGCATTA 58.984 47.619 0.00 0.00 0.00 1.90
437 438 2.620115 CAAATCCTGGTGCTCGCATTAT 59.380 45.455 0.00 0.00 0.00 1.28
438 439 2.645838 ATCCTGGTGCTCGCATTATT 57.354 45.000 0.00 0.00 0.00 1.40
439 440 1.953559 TCCTGGTGCTCGCATTATTC 58.046 50.000 0.00 0.00 0.00 1.75
440 441 0.947244 CCTGGTGCTCGCATTATTCC 59.053 55.000 0.00 0.00 0.00 3.01
441 442 1.475751 CCTGGTGCTCGCATTATTCCT 60.476 52.381 0.00 0.00 0.00 3.36
442 443 1.600957 CTGGTGCTCGCATTATTCCTG 59.399 52.381 0.00 0.00 0.00 3.86
443 444 1.209261 TGGTGCTCGCATTATTCCTGA 59.791 47.619 0.00 0.00 0.00 3.86
444 445 2.288666 GGTGCTCGCATTATTCCTGAA 58.711 47.619 0.00 0.00 0.00 3.02
445 446 2.880890 GGTGCTCGCATTATTCCTGAAT 59.119 45.455 0.00 0.00 34.93 2.57
446 447 3.316308 GGTGCTCGCATTATTCCTGAATT 59.684 43.478 0.00 0.00 32.50 2.17
447 448 4.202050 GGTGCTCGCATTATTCCTGAATTT 60.202 41.667 0.00 0.00 32.50 1.82
448 449 5.008613 GGTGCTCGCATTATTCCTGAATTTA 59.991 40.000 0.00 0.00 32.50 1.40
449 450 6.294176 GGTGCTCGCATTATTCCTGAATTTAT 60.294 38.462 0.00 0.00 32.50 1.40
450 451 7.141363 GTGCTCGCATTATTCCTGAATTTATT 58.859 34.615 0.00 0.00 32.50 1.40
451 452 7.649306 GTGCTCGCATTATTCCTGAATTTATTT 59.351 33.333 0.00 0.00 32.50 1.40
452 453 7.862372 TGCTCGCATTATTCCTGAATTTATTTC 59.138 33.333 0.00 0.00 34.72 2.17
453 454 7.862372 GCTCGCATTATTCCTGAATTTATTTCA 59.138 33.333 0.00 0.00 42.09 2.69
465 466 6.033341 TGAATTTATTTCAGGATTTTCGGCG 58.967 36.000 0.00 0.00 39.44 6.46
466 467 5.828299 ATTTATTTCAGGATTTTCGGCGA 57.172 34.783 4.99 4.99 0.00 5.54
467 468 5.828299 TTTATTTCAGGATTTTCGGCGAT 57.172 34.783 11.76 0.00 0.00 4.58
468 469 3.698029 ATTTCAGGATTTTCGGCGATG 57.302 42.857 11.76 4.79 0.00 3.84
469 470 0.732571 TTCAGGATTTTCGGCGATGC 59.267 50.000 11.76 0.31 0.00 3.91
470 471 1.010797 CAGGATTTTCGGCGATGCG 60.011 57.895 11.76 0.00 0.00 4.73
481 482 2.787249 CGATGCGCTTTCAGTGGG 59.213 61.111 9.73 0.00 0.00 4.61
482 483 1.741401 CGATGCGCTTTCAGTGGGA 60.741 57.895 9.73 0.00 0.00 4.37
483 484 1.699656 CGATGCGCTTTCAGTGGGAG 61.700 60.000 9.73 0.00 0.00 4.30
484 485 1.372087 GATGCGCTTTCAGTGGGAGG 61.372 60.000 9.73 0.00 0.00 4.30
485 486 1.841302 ATGCGCTTTCAGTGGGAGGA 61.841 55.000 9.73 0.00 0.00 3.71
486 487 1.743252 GCGCTTTCAGTGGGAGGAG 60.743 63.158 0.00 0.00 0.00 3.69
487 488 1.975327 CGCTTTCAGTGGGAGGAGA 59.025 57.895 0.00 0.00 0.00 3.71
488 489 0.390472 CGCTTTCAGTGGGAGGAGAC 60.390 60.000 0.00 0.00 0.00 3.36
489 490 0.390472 GCTTTCAGTGGGAGGAGACG 60.390 60.000 0.00 0.00 0.00 4.18
490 491 0.969894 CTTTCAGTGGGAGGAGACGT 59.030 55.000 0.00 0.00 0.00 4.34
491 492 1.344763 CTTTCAGTGGGAGGAGACGTT 59.655 52.381 0.00 0.00 0.00 3.99
492 493 1.420430 TTCAGTGGGAGGAGACGTTT 58.580 50.000 0.00 0.00 0.00 3.60
493 494 0.966920 TCAGTGGGAGGAGACGTTTC 59.033 55.000 0.00 0.00 0.00 2.78
494 495 0.037232 CAGTGGGAGGAGACGTTTCC 60.037 60.000 17.16 17.16 37.52 3.13
495 496 1.080025 GTGGGAGGAGACGTTTCCG 60.080 63.158 18.59 0.00 42.29 4.30
515 516 2.353607 GACGACGAGGCGCCTATG 60.354 66.667 32.97 27.02 33.86 2.23
516 517 3.825833 GACGACGAGGCGCCTATGG 62.826 68.421 32.97 23.64 33.86 2.74
517 518 3.900892 CGACGAGGCGCCTATGGT 61.901 66.667 32.97 26.91 0.00 3.55
518 519 2.279517 GACGAGGCGCCTATGGTG 60.280 66.667 32.97 18.94 36.10 4.17
519 520 3.792053 GACGAGGCGCCTATGGTGG 62.792 68.421 32.97 16.50 33.18 4.61
531 532 4.073293 CCTATGGTGGCTTCGTAAATCT 57.927 45.455 0.00 0.00 0.00 2.40
532 533 4.058817 CCTATGGTGGCTTCGTAAATCTC 58.941 47.826 0.00 0.00 0.00 2.75
533 534 3.627395 ATGGTGGCTTCGTAAATCTCA 57.373 42.857 0.00 0.00 0.00 3.27
534 535 3.410631 TGGTGGCTTCGTAAATCTCAA 57.589 42.857 0.00 0.00 0.00 3.02
535 536 3.334691 TGGTGGCTTCGTAAATCTCAAG 58.665 45.455 0.00 0.00 0.00 3.02
536 537 3.007506 TGGTGGCTTCGTAAATCTCAAGA 59.992 43.478 0.00 0.00 0.00 3.02
537 538 4.192317 GGTGGCTTCGTAAATCTCAAGAT 58.808 43.478 0.00 0.00 36.07 2.40
538 539 4.034510 GGTGGCTTCGTAAATCTCAAGATG 59.965 45.833 0.00 0.00 34.49 2.90
539 540 4.870426 GTGGCTTCGTAAATCTCAAGATGA 59.130 41.667 0.00 0.00 34.49 2.92
540 541 5.525378 GTGGCTTCGTAAATCTCAAGATGAT 59.475 40.000 0.00 0.00 34.49 2.45
541 542 6.701841 GTGGCTTCGTAAATCTCAAGATGATA 59.298 38.462 0.00 0.00 34.49 2.15
542 543 7.386299 GTGGCTTCGTAAATCTCAAGATGATAT 59.614 37.037 0.00 0.00 34.49 1.63
543 544 7.386025 TGGCTTCGTAAATCTCAAGATGATATG 59.614 37.037 0.00 0.00 34.49 1.78
544 545 7.232994 GCTTCGTAAATCTCAAGATGATATGC 58.767 38.462 0.00 0.00 34.49 3.14
545 546 7.623089 GCTTCGTAAATCTCAAGATGATATGCC 60.623 40.741 0.00 0.00 34.49 4.40
546 547 5.863935 TCGTAAATCTCAAGATGATATGCCG 59.136 40.000 0.00 0.00 34.49 5.69
547 548 5.062683 CGTAAATCTCAAGATGATATGCCGG 59.937 44.000 0.00 0.00 34.49 6.13
548 549 2.462456 TCTCAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
549 550 1.073964 CTCAAGATGATATGCCGGCG 58.926 55.000 23.90 0.00 0.00 6.46
550 551 0.678950 TCAAGATGATATGCCGGCGA 59.321 50.000 23.90 13.33 0.00 5.54
551 552 1.073964 CAAGATGATATGCCGGCGAG 58.926 55.000 23.90 0.00 0.00 5.03
552 553 0.036952 AAGATGATATGCCGGCGAGG 60.037 55.000 23.90 0.00 44.97 4.63
577 578 5.169836 CCTATGGTGGCTTCGTAAATTTC 57.830 43.478 0.00 0.00 0.00 2.17
578 579 4.638421 CCTATGGTGGCTTCGTAAATTTCA 59.362 41.667 0.00 0.00 0.00 2.69
579 580 5.124776 CCTATGGTGGCTTCGTAAATTTCAA 59.875 40.000 0.00 0.00 0.00 2.69
580 581 4.497473 TGGTGGCTTCGTAAATTTCAAG 57.503 40.909 0.00 0.00 0.00 3.02
581 582 4.138290 TGGTGGCTTCGTAAATTTCAAGA 58.862 39.130 0.00 0.00 0.00 3.02
582 583 4.764823 TGGTGGCTTCGTAAATTTCAAGAT 59.235 37.500 0.00 0.00 0.00 2.40
583 584 5.095490 GGTGGCTTCGTAAATTTCAAGATG 58.905 41.667 0.00 0.00 0.00 2.90
584 585 5.106317 GGTGGCTTCGTAAATTTCAAGATGA 60.106 40.000 0.00 0.00 0.00 2.92
585 586 6.404734 GGTGGCTTCGTAAATTTCAAGATGAT 60.405 38.462 0.00 0.00 0.00 2.45
586 587 7.201696 GGTGGCTTCGTAAATTTCAAGATGATA 60.202 37.037 0.00 0.00 0.00 2.15
587 588 8.345565 GTGGCTTCGTAAATTTCAAGATGATAT 58.654 33.333 0.00 0.00 0.00 1.63
588 589 8.344831 TGGCTTCGTAAATTTCAAGATGATATG 58.655 33.333 0.00 0.00 0.00 1.78
589 590 7.324616 GGCTTCGTAAATTTCAAGATGATATGC 59.675 37.037 0.00 0.00 0.00 3.14
590 591 7.324616 GCTTCGTAAATTTCAAGATGATATGCC 59.675 37.037 0.00 0.00 0.00 4.40
591 592 6.887368 TCGTAAATTTCAAGATGATATGCCG 58.113 36.000 0.00 0.00 0.00 5.69
592 593 6.073276 TCGTAAATTTCAAGATGATATGCCGG 60.073 38.462 0.00 0.00 0.00 6.13
593 594 4.510038 AATTTCAAGATGATATGCCGGC 57.490 40.909 22.73 22.73 0.00 6.13
594 595 2.936919 TTCAAGATGATATGCCGGCT 57.063 45.000 29.70 15.76 0.00 5.52
595 596 2.462456 TCAAGATGATATGCCGGCTC 57.538 50.000 29.70 17.89 0.00 4.70
596 597 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
597 598 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
598 599 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
599 600 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
600 601 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
601 602 1.123077 TGATATGCCGGCTCAGTCTT 58.877 50.000 29.70 5.10 0.00 3.01
602 603 1.486310 TGATATGCCGGCTCAGTCTTT 59.514 47.619 29.70 3.35 0.00 2.52
603 604 2.139118 GATATGCCGGCTCAGTCTTTC 58.861 52.381 29.70 9.22 0.00 2.62
604 605 0.901827 TATGCCGGCTCAGTCTTTCA 59.098 50.000 29.70 2.45 0.00 2.69
605 606 0.392193 ATGCCGGCTCAGTCTTTCAG 60.392 55.000 29.70 0.00 0.00 3.02
606 607 1.293498 GCCGGCTCAGTCTTTCAGA 59.707 57.895 22.15 0.00 0.00 3.27
607 608 0.739112 GCCGGCTCAGTCTTTCAGAG 60.739 60.000 22.15 0.00 33.62 3.35
608 609 0.108424 CCGGCTCAGTCTTTCAGAGG 60.108 60.000 0.00 0.00 31.57 3.69
609 610 0.605589 CGGCTCAGTCTTTCAGAGGT 59.394 55.000 0.00 0.00 31.57 3.85
610 611 1.671261 CGGCTCAGTCTTTCAGAGGTG 60.671 57.143 0.00 0.00 31.57 4.00
611 612 1.437625 GCTCAGTCTTTCAGAGGTGC 58.562 55.000 0.00 0.00 31.57 5.01
612 613 1.001860 GCTCAGTCTTTCAGAGGTGCT 59.998 52.381 0.00 0.00 31.57 4.40
613 614 2.930455 GCTCAGTCTTTCAGAGGTGCTC 60.930 54.545 0.00 0.00 31.57 4.26
614 615 2.298446 CTCAGTCTTTCAGAGGTGCTCA 59.702 50.000 0.00 0.00 32.06 4.26
615 616 2.902486 TCAGTCTTTCAGAGGTGCTCAT 59.098 45.455 0.00 0.00 32.06 2.90
616 617 4.089361 TCAGTCTTTCAGAGGTGCTCATA 58.911 43.478 0.00 0.00 32.06 2.15
617 618 4.159321 TCAGTCTTTCAGAGGTGCTCATAG 59.841 45.833 0.00 0.00 32.06 2.23
618 619 3.450457 AGTCTTTCAGAGGTGCTCATAGG 59.550 47.826 0.00 0.00 32.06 2.57
619 620 2.768527 TCTTTCAGAGGTGCTCATAGGG 59.231 50.000 0.00 0.00 32.06 3.53
620 621 1.500474 TTCAGAGGTGCTCATAGGGG 58.500 55.000 0.00 0.00 32.06 4.79
621 622 0.339859 TCAGAGGTGCTCATAGGGGT 59.660 55.000 0.00 0.00 32.06 4.95
622 623 1.573857 TCAGAGGTGCTCATAGGGGTA 59.426 52.381 0.00 0.00 32.06 3.69
623 624 1.967066 CAGAGGTGCTCATAGGGGTAG 59.033 57.143 0.00 0.00 32.06 3.18
624 625 1.133009 AGAGGTGCTCATAGGGGTAGG 60.133 57.143 0.00 0.00 32.06 3.18
625 626 0.104934 AGGTGCTCATAGGGGTAGGG 60.105 60.000 0.00 0.00 0.00 3.53
626 627 0.400093 GGTGCTCATAGGGGTAGGGT 60.400 60.000 0.00 0.00 0.00 4.34
627 628 1.132945 GGTGCTCATAGGGGTAGGGTA 60.133 57.143 0.00 0.00 0.00 3.69
628 629 2.494816 GGTGCTCATAGGGGTAGGGTAT 60.495 54.545 0.00 0.00 0.00 2.73
629 630 2.567615 GTGCTCATAGGGGTAGGGTATG 59.432 54.545 0.00 0.00 0.00 2.39
630 631 1.555533 GCTCATAGGGGTAGGGTATGC 59.444 57.143 0.00 0.00 0.00 3.14
631 632 1.825474 CTCATAGGGGTAGGGTATGCG 59.175 57.143 0.00 0.00 0.00 4.73
632 633 1.148446 TCATAGGGGTAGGGTATGCGT 59.852 52.381 0.00 0.00 0.00 5.24
633 634 2.379567 TCATAGGGGTAGGGTATGCGTA 59.620 50.000 0.00 0.00 0.00 4.42
634 635 3.012047 TCATAGGGGTAGGGTATGCGTAT 59.988 47.826 0.00 0.00 0.00 3.06
635 636 1.640917 AGGGGTAGGGTATGCGTATG 58.359 55.000 0.00 0.00 0.00 2.39
636 637 1.132945 AGGGGTAGGGTATGCGTATGT 60.133 52.381 0.00 0.00 0.00 2.29
637 638 1.001633 GGGGTAGGGTATGCGTATGTG 59.998 57.143 0.00 0.00 0.00 3.21
638 639 1.607251 GGGTAGGGTATGCGTATGTGC 60.607 57.143 0.00 0.00 0.00 4.57
639 640 1.415374 GTAGGGTATGCGTATGTGCG 58.585 55.000 0.00 0.00 37.81 5.34
640 641 1.034356 TAGGGTATGCGTATGTGCGT 58.966 50.000 0.00 0.00 37.81 5.24
641 642 0.177141 AGGGTATGCGTATGTGCGTT 59.823 50.000 0.00 0.00 37.81 4.84
642 643 0.580104 GGGTATGCGTATGTGCGTTC 59.420 55.000 0.00 0.00 37.81 3.95
643 644 1.282817 GGTATGCGTATGTGCGTTCA 58.717 50.000 0.00 0.00 37.81 3.18
644 645 1.864711 GGTATGCGTATGTGCGTTCAT 59.135 47.619 0.00 0.87 37.81 2.57
645 646 3.054166 GGTATGCGTATGTGCGTTCATA 58.946 45.455 0.00 0.00 37.81 2.15
646 647 3.121279 GGTATGCGTATGTGCGTTCATAG 59.879 47.826 0.00 0.73 37.81 2.23
647 648 1.566404 TGCGTATGTGCGTTCATAGG 58.434 50.000 13.25 13.25 38.44 2.57
648 649 0.859232 GCGTATGTGCGTTCATAGGG 59.141 55.000 16.69 8.49 36.95 3.53
649 650 1.497991 CGTATGTGCGTTCATAGGGG 58.502 55.000 11.13 0.39 34.54 4.79
650 651 1.202486 CGTATGTGCGTTCATAGGGGT 60.202 52.381 11.13 0.00 34.54 4.95
651 652 2.210116 GTATGTGCGTTCATAGGGGTG 58.790 52.381 2.83 0.00 32.01 4.61
652 653 0.908910 ATGTGCGTTCATAGGGGTGA 59.091 50.000 0.00 0.00 0.00 4.02
653 654 0.249120 TGTGCGTTCATAGGGGTGAG 59.751 55.000 0.00 0.00 0.00 3.51
654 655 0.249398 GTGCGTTCATAGGGGTGAGT 59.751 55.000 0.00 0.00 0.00 3.41
655 656 0.249120 TGCGTTCATAGGGGTGAGTG 59.751 55.000 0.00 0.00 0.00 3.51
656 657 0.249398 GCGTTCATAGGGGTGAGTGT 59.751 55.000 0.00 0.00 0.00 3.55
657 658 1.479323 GCGTTCATAGGGGTGAGTGTA 59.521 52.381 0.00 0.00 0.00 2.90
658 659 2.102588 GCGTTCATAGGGGTGAGTGTAT 59.897 50.000 0.00 0.00 0.00 2.29
659 660 3.717707 CGTTCATAGGGGTGAGTGTATG 58.282 50.000 0.00 0.00 0.00 2.39
660 661 3.467803 GTTCATAGGGGTGAGTGTATGC 58.532 50.000 0.00 0.00 0.00 3.14
661 662 1.686587 TCATAGGGGTGAGTGTATGCG 59.313 52.381 0.00 0.00 0.00 4.73
662 663 0.393077 ATAGGGGTGAGTGTATGCGC 59.607 55.000 0.00 0.00 0.00 6.09
663 664 2.011741 TAGGGGTGAGTGTATGCGCG 62.012 60.000 0.00 0.00 0.00 6.86
664 665 2.125673 GGGTGAGTGTATGCGCGT 60.126 61.111 8.43 7.55 0.00 6.01
665 666 2.452813 GGGTGAGTGTATGCGCGTG 61.453 63.158 13.61 0.00 0.00 5.34
666 667 1.736645 GGTGAGTGTATGCGCGTGT 60.737 57.895 13.61 0.00 0.00 4.49
667 668 0.457166 GGTGAGTGTATGCGCGTGTA 60.457 55.000 13.61 0.00 0.00 2.90
668 669 1.556564 GTGAGTGTATGCGCGTGTAT 58.443 50.000 13.61 4.63 0.00 2.29
669 670 2.542205 GGTGAGTGTATGCGCGTGTATA 60.542 50.000 13.61 2.40 0.00 1.47
670 671 3.305964 GTGAGTGTATGCGCGTGTATAT 58.694 45.455 13.61 0.00 0.00 0.86
671 672 3.119628 GTGAGTGTATGCGCGTGTATATG 59.880 47.826 13.61 0.00 0.00 1.78
672 673 3.003897 TGAGTGTATGCGCGTGTATATGA 59.996 43.478 13.61 0.00 0.00 2.15
673 674 3.972403 AGTGTATGCGCGTGTATATGAA 58.028 40.909 13.61 0.00 0.00 2.57
674 675 3.734231 AGTGTATGCGCGTGTATATGAAC 59.266 43.478 13.61 9.06 0.00 3.18
675 676 3.487942 GTGTATGCGCGTGTATATGAACA 59.512 43.478 13.61 2.61 0.00 3.18
676 677 3.487942 TGTATGCGCGTGTATATGAACAC 59.512 43.478 13.61 0.00 45.10 3.32
677 678 2.287393 TGCGCGTGTATATGAACACT 57.713 45.000 8.43 0.00 46.13 3.55
678 679 2.612604 TGCGCGTGTATATGAACACTT 58.387 42.857 8.43 0.00 46.13 3.16
679 680 2.347150 TGCGCGTGTATATGAACACTTG 59.653 45.455 8.43 1.56 46.13 3.16
680 681 2.347452 GCGCGTGTATATGAACACTTGT 59.653 45.455 8.43 0.00 46.13 3.16
681 682 3.780957 GCGCGTGTATATGAACACTTGTG 60.781 47.826 8.43 0.00 46.13 3.33
682 683 3.366724 CGCGTGTATATGAACACTTGTGT 59.633 43.478 0.00 0.00 46.13 3.72
683 684 4.490319 CGCGTGTATATGAACACTTGTGTC 60.490 45.833 6.88 2.36 46.13 3.67
684 685 4.625742 GCGTGTATATGAACACTTGTGTCT 59.374 41.667 6.88 0.00 46.13 3.41
685 686 5.444613 GCGTGTATATGAACACTTGTGTCTG 60.445 44.000 6.88 0.00 46.13 3.51
686 687 5.633601 CGTGTATATGAACACTTGTGTCTGT 59.366 40.000 6.88 0.00 46.13 3.41
687 688 6.804783 CGTGTATATGAACACTTGTGTCTGTA 59.195 38.462 6.88 1.65 46.13 2.74
688 689 7.201325 CGTGTATATGAACACTTGTGTCTGTAC 60.201 40.741 6.88 8.32 46.13 2.90
689 690 7.813148 GTGTATATGAACACTTGTGTCTGTACT 59.187 37.037 6.88 0.00 45.12 2.73
690 691 7.812669 TGTATATGAACACTTGTGTCTGTACTG 59.187 37.037 6.88 0.00 0.00 2.74
691 692 4.729227 TGAACACTTGTGTCTGTACTGA 57.271 40.909 6.88 0.00 0.00 3.41
692 693 5.276461 TGAACACTTGTGTCTGTACTGAT 57.724 39.130 6.88 0.00 0.00 2.90
693 694 5.049828 TGAACACTTGTGTCTGTACTGATG 58.950 41.667 6.88 1.98 0.00 3.07
694 695 3.393800 ACACTTGTGTCTGTACTGATGC 58.606 45.455 5.69 3.20 0.00 3.91
695 696 3.070159 ACACTTGTGTCTGTACTGATGCT 59.930 43.478 5.69 0.00 0.00 3.79
696 697 4.280929 ACACTTGTGTCTGTACTGATGCTA 59.719 41.667 5.69 0.00 0.00 3.49
697 698 5.221441 ACACTTGTGTCTGTACTGATGCTAA 60.221 40.000 5.69 0.07 0.00 3.09
698 699 5.696270 CACTTGTGTCTGTACTGATGCTAAA 59.304 40.000 5.69 0.00 0.00 1.85
699 700 6.202762 CACTTGTGTCTGTACTGATGCTAAAA 59.797 38.462 5.69 0.00 0.00 1.52
700 701 6.765989 ACTTGTGTCTGTACTGATGCTAAAAA 59.234 34.615 5.69 0.00 0.00 1.94
729 730 0.322546 GCGGTCCAAGGAAACCATCT 60.323 55.000 0.00 0.00 35.13 2.90
775 776 4.119363 ATGGCCCGCATGTCAGCT 62.119 61.111 0.00 0.00 0.00 4.24
868 870 1.468520 CCAACTGCCCAAACTACATCG 59.531 52.381 0.00 0.00 0.00 3.84
869 871 1.135689 CAACTGCCCAAACTACATCGC 60.136 52.381 0.00 0.00 0.00 4.58
870 872 1.019278 ACTGCCCAAACTACATCGCG 61.019 55.000 0.00 0.00 0.00 5.87
871 873 1.705337 CTGCCCAAACTACATCGCGG 61.705 60.000 6.13 0.00 0.00 6.46
872 874 3.098555 CCCAAACTACATCGCGGC 58.901 61.111 6.13 0.00 0.00 6.53
873 875 1.449601 CCCAAACTACATCGCGGCT 60.450 57.895 6.13 0.00 0.00 5.52
874 876 1.024579 CCCAAACTACATCGCGGCTT 61.025 55.000 6.13 0.00 0.00 4.35
875 877 0.096976 CCAAACTACATCGCGGCTTG 59.903 55.000 6.13 4.55 0.00 4.01
876 878 0.521242 CAAACTACATCGCGGCTTGC 60.521 55.000 6.13 0.00 41.47 4.01
877 879 1.644786 AAACTACATCGCGGCTTGCC 61.645 55.000 6.13 0.75 42.08 4.52
1005 1009 1.308069 CCACCAGAGGAAACATGGCG 61.308 60.000 0.00 0.00 41.75 5.69
1192 1522 2.356818 GAAGTCCATCTCCTCGGGCG 62.357 65.000 0.00 0.00 29.98 6.13
1311 1641 2.032681 GCCAAGCTCAAGTCCGGT 59.967 61.111 0.00 0.00 0.00 5.28
1591 1921 2.492773 GCCATGCCCGATCCCAAAG 61.493 63.158 0.00 0.00 0.00 2.77
1615 1945 5.126067 CCAATTGAGGTACCAAATCGATCT 58.874 41.667 15.94 0.00 0.00 2.75
1616 1946 5.008019 CCAATTGAGGTACCAAATCGATCTG 59.992 44.000 15.94 8.04 0.00 2.90
1617 1947 3.819564 TGAGGTACCAAATCGATCTGG 57.180 47.619 16.41 16.41 38.77 3.86
1619 1949 3.118775 TGAGGTACCAAATCGATCTGGTG 60.119 47.826 29.69 11.57 45.65 4.17
1621 1951 2.420129 GGTACCAAATCGATCTGGTGCT 60.420 50.000 30.14 11.00 45.65 4.40
1622 1952 2.029838 ACCAAATCGATCTGGTGCTC 57.970 50.000 22.56 0.00 44.42 4.26
1623 1953 1.278985 ACCAAATCGATCTGGTGCTCA 59.721 47.619 22.56 0.00 44.42 4.26
1624 1954 2.290260 ACCAAATCGATCTGGTGCTCAA 60.290 45.455 22.56 0.00 44.42 3.02
1625 1955 2.947652 CCAAATCGATCTGGTGCTCAAT 59.052 45.455 9.77 0.00 0.00 2.57
1626 1956 3.379372 CCAAATCGATCTGGTGCTCAATT 59.621 43.478 9.77 0.00 0.00 2.32
1627 1957 4.497006 CCAAATCGATCTGGTGCTCAATTC 60.497 45.833 9.77 0.00 0.00 2.17
1628 1958 3.834489 ATCGATCTGGTGCTCAATTCT 57.166 42.857 0.00 0.00 0.00 2.40
1680 2015 2.586258 TGCTAGATTTCGCACCTCTC 57.414 50.000 0.00 0.00 0.00 3.20
1691 2026 5.707242 TTCGCACCTCTCGAATCTTATAT 57.293 39.130 0.00 0.00 40.49 0.86
1692 2027 5.048153 TCGCACCTCTCGAATCTTATATG 57.952 43.478 0.00 0.00 32.53 1.78
1730 2065 5.263599 TCAGCATGGTGGATTCTGTTAAAT 58.736 37.500 23.85 0.00 36.16 1.40
1857 2193 5.531122 AGTTGCTAGATGCCGTATTCTTA 57.469 39.130 0.00 0.00 42.00 2.10
1966 2319 1.666553 TGCGGTTCACTAAGGCGTG 60.667 57.895 0.00 0.00 36.25 5.34
1967 2320 1.666872 GCGGTTCACTAAGGCGTGT 60.667 57.895 0.00 0.00 36.33 4.49
1968 2321 1.897398 GCGGTTCACTAAGGCGTGTG 61.897 60.000 2.12 2.12 36.33 3.82
1969 2322 1.289109 CGGTTCACTAAGGCGTGTGG 61.289 60.000 7.47 0.00 36.33 4.17
1970 2323 0.953960 GGTTCACTAAGGCGTGTGGG 60.954 60.000 7.47 0.00 36.33 4.61
1971 2324 0.953960 GTTCACTAAGGCGTGTGGGG 60.954 60.000 7.47 0.00 36.33 4.96
1972 2325 1.122632 TTCACTAAGGCGTGTGGGGA 61.123 55.000 7.47 0.00 36.33 4.81
1973 2326 1.375523 CACTAAGGCGTGTGGGGAC 60.376 63.158 0.00 0.00 0.00 4.46
1974 2327 1.839747 ACTAAGGCGTGTGGGGACA 60.840 57.895 0.00 0.00 38.70 4.02
2079 2432 7.971168 CCTGTATGTTGAAACAGTTTTGTGTAA 59.029 33.333 0.00 0.00 43.04 2.41
2148 2501 6.365520 AGTGTTCCTCCTTGTTTTGTCTATT 58.634 36.000 0.00 0.00 0.00 1.73
2241 2905 7.400339 GGTATCAGGGGAACAGAGAATATATCA 59.600 40.741 0.00 0.00 0.00 2.15
2264 2928 4.022849 ACCTTTTGGCTTTCAGAATTCTCG 60.023 41.667 4.57 1.84 45.59 4.04
2370 3052 5.222079 TGTCCAAGAAGTGTGCACTATAA 57.778 39.130 19.41 0.00 41.58 0.98
2398 3080 4.340097 ACACCCTTTAAACCTAACAGTTGC 59.660 41.667 0.00 0.00 0.00 4.17
2523 3216 3.356290 GGTGGACATGCATCCTAACTTT 58.644 45.455 7.83 0.00 39.75 2.66
2598 3291 6.765036 CAGTTTTGAGATAGCTGACCACATAT 59.235 38.462 0.00 0.00 0.00 1.78
2599 3292 6.765036 AGTTTTGAGATAGCTGACCACATATG 59.235 38.462 0.00 0.00 0.00 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 9.947433 TCTTTTTATGAATCTCCATGCAAAATT 57.053 25.926 0.00 0.00 0.00 1.82
23 24 9.947433 TTCTTTTTATGAATCTCCATGCAAAAT 57.053 25.926 0.00 0.00 0.00 1.82
24 25 9.775854 TTTCTTTTTATGAATCTCCATGCAAAA 57.224 25.926 0.00 0.00 0.00 2.44
25 26 9.947433 ATTTCTTTTTATGAATCTCCATGCAAA 57.053 25.926 0.00 0.00 0.00 3.68
69 70 9.399797 TCAAGTGATATAGTACGTAAGGAGAAA 57.600 33.333 0.00 0.00 46.39 2.52
70 71 8.834465 GTCAAGTGATATAGTACGTAAGGAGAA 58.166 37.037 0.00 0.00 46.39 2.87
71 72 8.209584 AGTCAAGTGATATAGTACGTAAGGAGA 58.790 37.037 0.00 0.00 46.39 3.71
72 73 8.283992 CAGTCAAGTGATATAGTACGTAAGGAG 58.716 40.741 0.00 0.00 46.39 3.69
73 74 7.772292 ACAGTCAAGTGATATAGTACGTAAGGA 59.228 37.037 0.00 0.00 46.39 3.36
74 75 7.928103 ACAGTCAAGTGATATAGTACGTAAGG 58.072 38.462 0.00 0.00 46.39 2.69
76 77 7.012704 GGGACAGTCAAGTGATATAGTACGTAA 59.987 40.741 2.17 0.00 0.00 3.18
77 78 6.484643 GGGACAGTCAAGTGATATAGTACGTA 59.515 42.308 2.17 0.00 0.00 3.57
78 79 5.298777 GGGACAGTCAAGTGATATAGTACGT 59.701 44.000 2.17 0.00 0.00 3.57
79 80 5.531659 AGGGACAGTCAAGTGATATAGTACG 59.468 44.000 2.17 0.00 0.00 3.67
80 81 6.546403 TGAGGGACAGTCAAGTGATATAGTAC 59.454 42.308 2.17 0.00 0.00 2.73
81 82 6.669631 TGAGGGACAGTCAAGTGATATAGTA 58.330 40.000 2.17 0.00 0.00 1.82
82 83 5.519808 TGAGGGACAGTCAAGTGATATAGT 58.480 41.667 2.17 0.00 0.00 2.12
83 84 6.471233 TTGAGGGACAGTCAAGTGATATAG 57.529 41.667 2.17 0.00 30.36 1.31
84 85 6.867519 TTTGAGGGACAGTCAAGTGATATA 57.132 37.500 2.17 0.00 35.39 0.86
85 86 5.762179 TTTGAGGGACAGTCAAGTGATAT 57.238 39.130 2.17 0.00 35.39 1.63
86 87 5.560722 TTTTGAGGGACAGTCAAGTGATA 57.439 39.130 2.17 0.00 35.39 2.15
87 88 4.437682 TTTTGAGGGACAGTCAAGTGAT 57.562 40.909 2.17 0.00 35.39 3.06
88 89 3.924114 TTTTGAGGGACAGTCAAGTGA 57.076 42.857 2.17 0.00 35.39 3.41
108 109 8.688151 GGTCTCAGTCAAGTGATATAGTACTTT 58.312 37.037 0.00 0.00 35.08 2.66
109 110 8.056400 AGGTCTCAGTCAAGTGATATAGTACTT 58.944 37.037 0.00 0.00 37.61 2.24
110 111 7.579105 AGGTCTCAGTCAAGTGATATAGTACT 58.421 38.462 0.00 0.00 0.00 2.73
111 112 7.811117 AGGTCTCAGTCAAGTGATATAGTAC 57.189 40.000 0.00 0.00 0.00 2.73
112 113 7.662258 GCTAGGTCTCAGTCAAGTGATATAGTA 59.338 40.741 0.00 0.00 0.00 1.82
113 114 6.488683 GCTAGGTCTCAGTCAAGTGATATAGT 59.511 42.308 0.00 0.00 0.00 2.12
114 115 6.072175 GGCTAGGTCTCAGTCAAGTGATATAG 60.072 46.154 0.00 0.00 0.00 1.31
115 116 5.770663 GGCTAGGTCTCAGTCAAGTGATATA 59.229 44.000 0.00 0.00 0.00 0.86
116 117 4.586841 GGCTAGGTCTCAGTCAAGTGATAT 59.413 45.833 0.00 0.00 0.00 1.63
117 118 3.954904 GGCTAGGTCTCAGTCAAGTGATA 59.045 47.826 0.00 0.00 0.00 2.15
118 119 2.763448 GGCTAGGTCTCAGTCAAGTGAT 59.237 50.000 0.00 0.00 0.00 3.06
119 120 2.171840 GGCTAGGTCTCAGTCAAGTGA 58.828 52.381 0.00 0.00 0.00 3.41
120 121 1.895798 TGGCTAGGTCTCAGTCAAGTG 59.104 52.381 0.00 0.00 0.00 3.16
121 122 1.896465 GTGGCTAGGTCTCAGTCAAGT 59.104 52.381 0.00 0.00 27.45 3.16
122 123 1.895798 TGTGGCTAGGTCTCAGTCAAG 59.104 52.381 0.00 0.00 27.45 3.02
123 124 1.618837 GTGTGGCTAGGTCTCAGTCAA 59.381 52.381 0.00 0.00 27.45 3.18
124 125 1.203063 AGTGTGGCTAGGTCTCAGTCA 60.203 52.381 0.00 0.00 0.00 3.41
125 126 1.474879 GAGTGTGGCTAGGTCTCAGTC 59.525 57.143 0.00 0.00 0.00 3.51
126 127 1.076350 AGAGTGTGGCTAGGTCTCAGT 59.924 52.381 0.00 0.00 0.00 3.41
127 128 1.846007 AGAGTGTGGCTAGGTCTCAG 58.154 55.000 0.00 0.00 0.00 3.35
128 129 3.451402 TTAGAGTGTGGCTAGGTCTCA 57.549 47.619 0.00 0.00 0.00 3.27
129 130 4.803098 TTTTAGAGTGTGGCTAGGTCTC 57.197 45.455 0.00 0.00 0.00 3.36
153 154 8.119226 GCATTTTGCACAAAAACTTGTTACATA 58.881 29.630 12.17 0.00 44.26 2.29
154 155 6.966066 GCATTTTGCACAAAAACTTGTTACAT 59.034 30.769 12.17 0.00 44.26 2.29
155 156 6.310197 GCATTTTGCACAAAAACTTGTTACA 58.690 32.000 12.17 0.00 44.26 2.41
156 157 6.773164 GCATTTTGCACAAAAACTTGTTAC 57.227 33.333 12.17 0.00 44.26 2.50
179 180 5.698832 TGGAAAAAGTTAACTGCATCGATG 58.301 37.500 21.27 21.27 0.00 3.84
180 181 5.957842 TGGAAAAAGTTAACTGCATCGAT 57.042 34.783 9.34 0.00 0.00 3.59
181 182 5.471797 TCATGGAAAAAGTTAACTGCATCGA 59.528 36.000 9.34 5.54 0.00 3.59
182 183 5.698832 TCATGGAAAAAGTTAACTGCATCG 58.301 37.500 9.34 0.74 0.00 3.84
183 184 9.638239 TTATTCATGGAAAAAGTTAACTGCATC 57.362 29.630 9.34 7.48 0.00 3.91
184 185 9.995003 TTTATTCATGGAAAAAGTTAACTGCAT 57.005 25.926 9.34 1.20 0.00 3.96
185 186 9.823647 TTTTATTCATGGAAAAAGTTAACTGCA 57.176 25.926 9.34 0.00 0.00 4.41
193 194 9.492973 CCTCATGTTTTTATTCATGGAAAAAGT 57.507 29.630 11.60 4.71 40.94 2.66
194 195 8.938906 CCCTCATGTTTTTATTCATGGAAAAAG 58.061 33.333 11.60 4.51 40.94 2.27
195 196 8.435982 ACCCTCATGTTTTTATTCATGGAAAAA 58.564 29.630 8.72 8.72 40.94 1.94
196 197 7.877097 CACCCTCATGTTTTTATTCATGGAAAA 59.123 33.333 0.00 0.00 40.94 2.29
197 198 7.016072 ACACCCTCATGTTTTTATTCATGGAAA 59.984 33.333 0.00 0.00 40.94 3.13
198 199 6.496565 ACACCCTCATGTTTTTATTCATGGAA 59.503 34.615 0.00 0.00 40.94 3.53
199 200 6.015918 ACACCCTCATGTTTTTATTCATGGA 58.984 36.000 0.00 0.00 40.94 3.41
200 201 6.284891 ACACCCTCATGTTTTTATTCATGG 57.715 37.500 0.00 0.00 40.94 3.66
232 233 4.445385 GTGGACTGTACACGACGTATTTTT 59.555 41.667 7.51 0.00 31.20 1.94
233 234 3.983344 GTGGACTGTACACGACGTATTTT 59.017 43.478 7.51 0.00 31.20 1.82
234 235 3.568538 GTGGACTGTACACGACGTATTT 58.431 45.455 7.51 0.00 31.20 1.40
235 236 2.095059 GGTGGACTGTACACGACGTATT 60.095 50.000 16.52 0.00 39.69 1.89
236 237 1.470098 GGTGGACTGTACACGACGTAT 59.530 52.381 16.52 0.00 39.69 3.06
237 238 0.874390 GGTGGACTGTACACGACGTA 59.126 55.000 16.52 0.00 39.69 3.57
238 239 1.656441 GGTGGACTGTACACGACGT 59.344 57.895 16.52 0.00 39.69 4.34
239 240 1.441515 CGGTGGACTGTACACGACG 60.442 63.158 16.52 11.61 39.69 5.12
240 241 1.731969 GCGGTGGACTGTACACGAC 60.732 63.158 16.52 7.59 39.69 4.34
241 242 1.859427 GAGCGGTGGACTGTACACGA 61.859 60.000 16.52 0.00 39.69 4.35
242 243 1.443872 GAGCGGTGGACTGTACACG 60.444 63.158 16.52 12.66 39.69 4.49
243 244 0.666577 GTGAGCGGTGGACTGTACAC 60.667 60.000 14.87 14.87 38.10 2.90
244 245 0.826256 AGTGAGCGGTGGACTGTACA 60.826 55.000 0.00 0.00 0.00 2.90
245 246 1.171308 TAGTGAGCGGTGGACTGTAC 58.829 55.000 0.00 0.00 0.00 2.90
246 247 1.542915 GTTAGTGAGCGGTGGACTGTA 59.457 52.381 0.00 0.00 0.00 2.74
247 248 0.317479 GTTAGTGAGCGGTGGACTGT 59.683 55.000 0.00 0.00 0.00 3.55
248 249 0.317160 TGTTAGTGAGCGGTGGACTG 59.683 55.000 0.00 0.00 0.00 3.51
249 250 0.603569 CTGTTAGTGAGCGGTGGACT 59.396 55.000 0.00 0.00 0.00 3.85
250 251 0.601558 TCTGTTAGTGAGCGGTGGAC 59.398 55.000 0.00 0.00 0.00 4.02
251 252 1.204704 CATCTGTTAGTGAGCGGTGGA 59.795 52.381 0.00 0.00 0.00 4.02
252 253 1.204704 TCATCTGTTAGTGAGCGGTGG 59.795 52.381 0.00 0.00 0.00 4.61
253 254 2.534298 CTCATCTGTTAGTGAGCGGTG 58.466 52.381 0.00 0.00 35.87 4.94
254 255 2.949451 CTCATCTGTTAGTGAGCGGT 57.051 50.000 0.00 0.00 35.87 5.68
258 259 6.039829 TGTGTATAGGCTCATCTGTTAGTGAG 59.960 42.308 0.00 0.00 43.62 3.51
259 260 5.891551 TGTGTATAGGCTCATCTGTTAGTGA 59.108 40.000 0.00 0.00 0.00 3.41
260 261 6.149129 TGTGTATAGGCTCATCTGTTAGTG 57.851 41.667 0.00 0.00 0.00 2.74
261 262 6.239430 CCATGTGTATAGGCTCATCTGTTAGT 60.239 42.308 0.00 0.00 0.00 2.24
262 263 6.015095 TCCATGTGTATAGGCTCATCTGTTAG 60.015 42.308 0.00 0.00 0.00 2.34
263 264 5.838521 TCCATGTGTATAGGCTCATCTGTTA 59.161 40.000 0.00 0.00 0.00 2.41
264 265 4.655649 TCCATGTGTATAGGCTCATCTGTT 59.344 41.667 0.00 0.00 0.00 3.16
265 266 4.226384 TCCATGTGTATAGGCTCATCTGT 58.774 43.478 0.00 0.00 0.00 3.41
266 267 4.879197 TCCATGTGTATAGGCTCATCTG 57.121 45.455 0.00 0.00 0.00 2.90
267 268 5.126222 CGTATCCATGTGTATAGGCTCATCT 59.874 44.000 0.00 0.00 0.00 2.90
268 269 5.344066 CGTATCCATGTGTATAGGCTCATC 58.656 45.833 0.00 0.00 0.00 2.92
269 270 4.382040 GCGTATCCATGTGTATAGGCTCAT 60.382 45.833 13.25 0.00 36.82 2.90
270 271 3.056821 GCGTATCCATGTGTATAGGCTCA 60.057 47.826 13.25 0.00 36.82 4.26
271 272 3.512680 GCGTATCCATGTGTATAGGCTC 58.487 50.000 13.25 0.00 36.82 4.70
272 273 2.233922 GGCGTATCCATGTGTATAGGCT 59.766 50.000 17.09 0.00 38.73 4.58
273 274 2.028476 TGGCGTATCCATGTGTATAGGC 60.028 50.000 12.58 12.58 40.72 3.93
274 275 3.849911 CTGGCGTATCCATGTGTATAGG 58.150 50.000 0.00 0.00 45.50 2.57
275 276 3.254060 GCTGGCGTATCCATGTGTATAG 58.746 50.000 0.00 0.00 45.50 1.31
276 277 2.630580 TGCTGGCGTATCCATGTGTATA 59.369 45.455 0.00 0.00 45.50 1.47
277 278 1.416030 TGCTGGCGTATCCATGTGTAT 59.584 47.619 0.00 0.00 45.50 2.29
278 279 0.827368 TGCTGGCGTATCCATGTGTA 59.173 50.000 0.00 0.00 45.50 2.90
279 280 0.181114 ATGCTGGCGTATCCATGTGT 59.819 50.000 0.00 0.00 45.50 3.72
280 281 1.800586 GTATGCTGGCGTATCCATGTG 59.199 52.381 0.00 0.00 45.50 3.21
281 282 1.416030 TGTATGCTGGCGTATCCATGT 59.584 47.619 0.00 0.00 45.50 3.21
282 283 1.800586 GTGTATGCTGGCGTATCCATG 59.199 52.381 0.00 0.00 45.50 3.66
283 284 1.605457 CGTGTATGCTGGCGTATCCAT 60.605 52.381 0.00 0.00 45.50 3.41
284 285 0.249280 CGTGTATGCTGGCGTATCCA 60.249 55.000 0.00 0.00 44.18 3.41
285 286 0.249322 ACGTGTATGCTGGCGTATCC 60.249 55.000 0.00 0.00 35.71 2.59
286 287 2.316792 CTACGTGTATGCTGGCGTATC 58.683 52.381 0.00 0.00 38.78 2.24
287 288 1.000607 CCTACGTGTATGCTGGCGTAT 60.001 52.381 0.00 0.00 38.78 3.06
288 289 0.382873 CCTACGTGTATGCTGGCGTA 59.617 55.000 0.00 0.00 38.56 4.42
289 290 1.141019 CCTACGTGTATGCTGGCGT 59.859 57.895 0.00 0.00 40.76 5.68
290 291 2.237751 GCCTACGTGTATGCTGGCG 61.238 63.158 0.00 0.00 0.00 5.69
291 292 1.887707 GGCCTACGTGTATGCTGGC 60.888 63.158 0.00 3.92 39.61 4.85
292 293 0.530650 CTGGCCTACGTGTATGCTGG 60.531 60.000 3.32 0.00 0.00 4.85
293 294 0.175760 ACTGGCCTACGTGTATGCTG 59.824 55.000 3.32 4.19 0.00 4.41
294 295 1.681793 CTACTGGCCTACGTGTATGCT 59.318 52.381 3.32 0.00 0.00 3.79
295 296 1.679680 TCTACTGGCCTACGTGTATGC 59.320 52.381 3.32 0.00 0.00 3.14
296 297 3.630769 TCTTCTACTGGCCTACGTGTATG 59.369 47.826 3.32 0.00 0.00 2.39
297 298 3.631227 GTCTTCTACTGGCCTACGTGTAT 59.369 47.826 3.32 0.00 0.00 2.29
298 299 3.012518 GTCTTCTACTGGCCTACGTGTA 58.987 50.000 3.32 0.00 0.00 2.90
299 300 1.817447 GTCTTCTACTGGCCTACGTGT 59.183 52.381 3.32 0.00 0.00 4.49
300 301 1.134560 GGTCTTCTACTGGCCTACGTG 59.865 57.143 3.32 0.00 0.00 4.49
301 302 1.272313 TGGTCTTCTACTGGCCTACGT 60.272 52.381 3.32 0.69 0.00 3.57
302 303 1.134560 GTGGTCTTCTACTGGCCTACG 59.865 57.143 3.32 0.00 0.00 3.51
303 304 2.176889 TGTGGTCTTCTACTGGCCTAC 58.823 52.381 3.32 0.00 0.00 3.18
304 305 2.615986 TGTGGTCTTCTACTGGCCTA 57.384 50.000 3.32 0.00 0.00 3.93
305 306 1.729586 TTGTGGTCTTCTACTGGCCT 58.270 50.000 3.32 0.00 0.00 5.19
306 307 2.552743 GTTTTGTGGTCTTCTACTGGCC 59.447 50.000 0.00 0.00 0.00 5.36
307 308 2.552743 GGTTTTGTGGTCTTCTACTGGC 59.447 50.000 0.00 0.00 0.00 4.85
308 309 3.815809 TGGTTTTGTGGTCTTCTACTGG 58.184 45.455 0.00 0.00 0.00 4.00
309 310 7.687941 AATATGGTTTTGTGGTCTTCTACTG 57.312 36.000 0.00 0.00 0.00 2.74
310 311 8.706322 AAAATATGGTTTTGTGGTCTTCTACT 57.294 30.769 0.00 0.00 0.00 2.57
330 331 9.337091 GCGTTTGATGCTAGAACTTTAAAAATA 57.663 29.630 0.00 0.00 0.00 1.40
331 332 7.060633 CGCGTTTGATGCTAGAACTTTAAAAAT 59.939 33.333 0.00 0.00 0.00 1.82
332 333 6.358558 CGCGTTTGATGCTAGAACTTTAAAAA 59.641 34.615 0.00 0.00 0.00 1.94
333 334 5.849081 CGCGTTTGATGCTAGAACTTTAAAA 59.151 36.000 0.00 0.00 0.00 1.52
334 335 5.177881 TCGCGTTTGATGCTAGAACTTTAAA 59.822 36.000 5.77 0.00 0.00 1.52
335 336 4.687018 TCGCGTTTGATGCTAGAACTTTAA 59.313 37.500 5.77 0.00 0.00 1.52
336 337 4.239304 TCGCGTTTGATGCTAGAACTTTA 58.761 39.130 5.77 0.00 0.00 1.85
337 338 3.064207 TCGCGTTTGATGCTAGAACTTT 58.936 40.909 5.77 0.00 0.00 2.66
338 339 2.683968 TCGCGTTTGATGCTAGAACTT 58.316 42.857 5.77 0.00 0.00 2.66
339 340 2.363788 TCGCGTTTGATGCTAGAACT 57.636 45.000 5.77 0.00 0.00 3.01
340 341 2.474032 GGTTCGCGTTTGATGCTAGAAC 60.474 50.000 5.77 0.00 32.98 3.01
341 342 1.730064 GGTTCGCGTTTGATGCTAGAA 59.270 47.619 5.77 0.00 0.00 2.10
342 343 1.337354 TGGTTCGCGTTTGATGCTAGA 60.337 47.619 5.77 0.00 0.00 2.43
343 344 1.075542 TGGTTCGCGTTTGATGCTAG 58.924 50.000 5.77 0.00 0.00 3.42
344 345 1.195900 GTTGGTTCGCGTTTGATGCTA 59.804 47.619 5.77 0.00 0.00 3.49
345 346 0.040425 GTTGGTTCGCGTTTGATGCT 60.040 50.000 5.77 0.00 0.00 3.79
346 347 1.001745 GGTTGGTTCGCGTTTGATGC 61.002 55.000 5.77 0.00 0.00 3.91
347 348 0.591170 AGGTTGGTTCGCGTTTGATG 59.409 50.000 5.77 0.00 0.00 3.07
348 349 0.591170 CAGGTTGGTTCGCGTTTGAT 59.409 50.000 5.77 0.00 0.00 2.57
349 350 0.745128 ACAGGTTGGTTCGCGTTTGA 60.745 50.000 5.77 0.00 0.00 2.69
350 351 0.591236 CACAGGTTGGTTCGCGTTTG 60.591 55.000 5.77 0.00 0.00 2.93
351 352 1.720694 CCACAGGTTGGTTCGCGTTT 61.721 55.000 5.77 0.00 41.10 3.60
352 353 2.184167 CCACAGGTTGGTTCGCGTT 61.184 57.895 5.77 0.00 41.10 4.84
353 354 2.590575 CCACAGGTTGGTTCGCGT 60.591 61.111 5.77 0.00 41.10 6.01
363 364 2.305927 CCTAACCATCTCAACCACAGGT 59.694 50.000 0.00 0.00 37.65 4.00
364 365 2.305927 ACCTAACCATCTCAACCACAGG 59.694 50.000 0.00 0.00 0.00 4.00
365 366 3.338249 CACCTAACCATCTCAACCACAG 58.662 50.000 0.00 0.00 0.00 3.66
366 367 2.039746 CCACCTAACCATCTCAACCACA 59.960 50.000 0.00 0.00 0.00 4.17
367 368 2.304761 TCCACCTAACCATCTCAACCAC 59.695 50.000 0.00 0.00 0.00 4.16
368 369 2.304761 GTCCACCTAACCATCTCAACCA 59.695 50.000 0.00 0.00 0.00 3.67
369 370 2.304761 TGTCCACCTAACCATCTCAACC 59.695 50.000 0.00 0.00 0.00 3.77
370 371 3.695830 TGTCCACCTAACCATCTCAAC 57.304 47.619 0.00 0.00 0.00 3.18
371 372 4.567537 CCATTGTCCACCTAACCATCTCAA 60.568 45.833 0.00 0.00 0.00 3.02
372 373 3.054434 CCATTGTCCACCTAACCATCTCA 60.054 47.826 0.00 0.00 0.00 3.27
373 374 3.054361 ACCATTGTCCACCTAACCATCTC 60.054 47.826 0.00 0.00 0.00 2.75
374 375 2.919602 ACCATTGTCCACCTAACCATCT 59.080 45.455 0.00 0.00 0.00 2.90
375 376 3.366052 ACCATTGTCCACCTAACCATC 57.634 47.619 0.00 0.00 0.00 3.51
376 377 4.141251 GGATACCATTGTCCACCTAACCAT 60.141 45.833 0.00 0.00 33.15 3.55
377 378 3.201266 GGATACCATTGTCCACCTAACCA 59.799 47.826 0.00 0.00 33.15 3.67
378 379 3.816994 GGATACCATTGTCCACCTAACC 58.183 50.000 0.00 0.00 33.15 2.85
394 395 1.613061 CCTGGTGGGTTGGGGATAC 59.387 63.158 0.00 0.00 0.00 2.24
395 396 4.179896 CCTGGTGGGTTGGGGATA 57.820 61.111 0.00 0.00 0.00 2.59
405 406 1.549203 CAGGATTTGAACCCTGGTGG 58.451 55.000 0.00 0.00 44.68 4.61
410 411 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
411 412 1.177401 GAGCACCAGGATTTGAACCC 58.823 55.000 0.00 0.00 0.00 4.11
412 413 0.804989 CGAGCACCAGGATTTGAACC 59.195 55.000 0.00 0.00 0.00 3.62
413 414 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.000 0.00 0.00 0.00 3.18
414 415 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
415 416 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
416 417 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
417 418 2.418368 TAATGCGAGCACCAGGATTT 57.582 45.000 0.00 0.00 31.11 2.17
418 419 2.645838 ATAATGCGAGCACCAGGATT 57.354 45.000 0.00 0.00 33.17 3.01
419 420 2.498167 GAATAATGCGAGCACCAGGAT 58.502 47.619 0.00 0.00 0.00 3.24
420 421 1.475034 GGAATAATGCGAGCACCAGGA 60.475 52.381 0.00 0.00 0.00 3.86
421 422 0.947244 GGAATAATGCGAGCACCAGG 59.053 55.000 0.00 0.00 0.00 4.45
422 423 1.600957 CAGGAATAATGCGAGCACCAG 59.399 52.381 0.00 0.00 0.00 4.00
423 424 1.209261 TCAGGAATAATGCGAGCACCA 59.791 47.619 0.00 0.00 0.00 4.17
424 425 1.953559 TCAGGAATAATGCGAGCACC 58.046 50.000 0.00 0.00 0.00 5.01
425 426 4.558538 AATTCAGGAATAATGCGAGCAC 57.441 40.909 0.00 0.00 0.00 4.40
426 427 6.882610 ATAAATTCAGGAATAATGCGAGCA 57.117 33.333 0.00 0.00 0.00 4.26
427 428 7.862372 TGAAATAAATTCAGGAATAATGCGAGC 59.138 33.333 0.00 0.00 43.08 5.03
441 442 6.033341 CGCCGAAAATCCTGAAATAAATTCA 58.967 36.000 0.00 0.00 45.71 2.57
442 443 6.262601 TCGCCGAAAATCCTGAAATAAATTC 58.737 36.000 0.00 0.00 38.60 2.17
443 444 6.202516 TCGCCGAAAATCCTGAAATAAATT 57.797 33.333 0.00 0.00 0.00 1.82
444 445 5.828299 TCGCCGAAAATCCTGAAATAAAT 57.172 34.783 0.00 0.00 0.00 1.40
445 446 5.577835 CATCGCCGAAAATCCTGAAATAAA 58.422 37.500 0.00 0.00 0.00 1.40
446 447 4.497340 GCATCGCCGAAAATCCTGAAATAA 60.497 41.667 0.00 0.00 0.00 1.40
447 448 3.003275 GCATCGCCGAAAATCCTGAAATA 59.997 43.478 0.00 0.00 0.00 1.40
448 449 2.223572 GCATCGCCGAAAATCCTGAAAT 60.224 45.455 0.00 0.00 0.00 2.17
449 450 1.132262 GCATCGCCGAAAATCCTGAAA 59.868 47.619 0.00 0.00 0.00 2.69
450 451 0.732571 GCATCGCCGAAAATCCTGAA 59.267 50.000 0.00 0.00 0.00 3.02
451 452 1.428370 CGCATCGCCGAAAATCCTGA 61.428 55.000 0.00 0.00 0.00 3.86
452 453 1.010797 CGCATCGCCGAAAATCCTG 60.011 57.895 0.00 0.00 0.00 3.86
453 454 3.409856 CGCATCGCCGAAAATCCT 58.590 55.556 0.00 0.00 0.00 3.24
464 465 1.699656 CTCCCACTGAAAGCGCATCG 61.700 60.000 11.47 6.82 37.60 3.84
465 466 1.372087 CCTCCCACTGAAAGCGCATC 61.372 60.000 11.47 8.39 37.60 3.91
466 467 1.377725 CCTCCCACTGAAAGCGCAT 60.378 57.895 11.47 0.00 37.60 4.73
467 468 2.032528 CCTCCCACTGAAAGCGCA 59.967 61.111 11.47 0.00 37.60 6.09
468 469 1.743252 CTCCTCCCACTGAAAGCGC 60.743 63.158 0.00 0.00 37.60 5.92
469 470 0.390472 GTCTCCTCCCACTGAAAGCG 60.390 60.000 0.00 0.00 37.60 4.68
470 471 0.390472 CGTCTCCTCCCACTGAAAGC 60.390 60.000 0.00 0.00 37.60 3.51
471 472 0.969894 ACGTCTCCTCCCACTGAAAG 59.030 55.000 0.00 0.00 42.29 2.62
472 473 1.420430 AACGTCTCCTCCCACTGAAA 58.580 50.000 0.00 0.00 0.00 2.69
473 474 1.343465 GAAACGTCTCCTCCCACTGAA 59.657 52.381 0.00 0.00 0.00 3.02
474 475 0.966920 GAAACGTCTCCTCCCACTGA 59.033 55.000 0.00 0.00 0.00 3.41
475 476 0.037232 GGAAACGTCTCCTCCCACTG 60.037 60.000 0.00 0.00 32.21 3.66
476 477 2.363297 GGAAACGTCTCCTCCCACT 58.637 57.895 0.00 0.00 32.21 4.00
497 498 3.950254 ATAGGCGCCTCGTCGTCG 61.950 66.667 36.73 0.00 39.34 5.12
498 499 2.353607 CATAGGCGCCTCGTCGTC 60.354 66.667 36.73 0.00 36.23 4.20
499 500 3.900892 CCATAGGCGCCTCGTCGT 61.901 66.667 36.73 11.27 36.23 4.34
500 501 3.900892 ACCATAGGCGCCTCGTCG 61.901 66.667 36.73 21.01 36.23 5.12
501 502 2.279517 CACCATAGGCGCCTCGTC 60.280 66.667 36.73 1.08 0.00 4.20
502 503 3.849951 CCACCATAGGCGCCTCGT 61.850 66.667 36.73 24.45 0.00 4.18
510 511 4.058817 GAGATTTACGAAGCCACCATAGG 58.941 47.826 0.00 0.00 0.00 2.57
511 512 4.693283 TGAGATTTACGAAGCCACCATAG 58.307 43.478 0.00 0.00 0.00 2.23
512 513 4.746535 TGAGATTTACGAAGCCACCATA 57.253 40.909 0.00 0.00 0.00 2.74
513 514 3.627395 TGAGATTTACGAAGCCACCAT 57.373 42.857 0.00 0.00 0.00 3.55
514 515 3.007506 TCTTGAGATTTACGAAGCCACCA 59.992 43.478 0.00 0.00 0.00 4.17
515 516 3.596214 TCTTGAGATTTACGAAGCCACC 58.404 45.455 0.00 0.00 0.00 4.61
516 517 4.870426 TCATCTTGAGATTTACGAAGCCAC 59.130 41.667 0.00 0.00 31.21 5.01
517 518 5.084818 TCATCTTGAGATTTACGAAGCCA 57.915 39.130 0.00 0.00 31.21 4.75
518 519 7.623089 GCATATCATCTTGAGATTTACGAAGCC 60.623 40.741 0.00 0.00 31.21 4.35
519 520 7.232994 GCATATCATCTTGAGATTTACGAAGC 58.767 38.462 0.00 0.00 31.21 3.86
520 521 7.411264 CGGCATATCATCTTGAGATTTACGAAG 60.411 40.741 0.00 0.00 31.21 3.79
521 522 6.366061 CGGCATATCATCTTGAGATTTACGAA 59.634 38.462 0.00 0.00 31.21 3.85
522 523 5.863935 CGGCATATCATCTTGAGATTTACGA 59.136 40.000 0.00 0.00 31.21 3.43
523 524 5.062683 CCGGCATATCATCTTGAGATTTACG 59.937 44.000 0.00 0.00 31.21 3.18
524 525 5.163814 GCCGGCATATCATCTTGAGATTTAC 60.164 44.000 24.80 0.00 31.21 2.01
525 526 4.937620 GCCGGCATATCATCTTGAGATTTA 59.062 41.667 24.80 0.00 31.21 1.40
526 527 3.755378 GCCGGCATATCATCTTGAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
527 528 3.341823 GCCGGCATATCATCTTGAGATT 58.658 45.455 24.80 0.00 31.21 2.40
528 529 2.676176 CGCCGGCATATCATCTTGAGAT 60.676 50.000 28.98 0.00 34.56 2.75
529 530 1.337167 CGCCGGCATATCATCTTGAGA 60.337 52.381 28.98 0.00 0.00 3.27
530 531 1.073964 CGCCGGCATATCATCTTGAG 58.926 55.000 28.98 0.12 0.00 3.02
531 532 0.678950 TCGCCGGCATATCATCTTGA 59.321 50.000 28.98 8.36 0.00 3.02
532 533 1.073964 CTCGCCGGCATATCATCTTG 58.926 55.000 28.98 5.69 0.00 3.02
533 534 0.036952 CCTCGCCGGCATATCATCTT 60.037 55.000 28.98 0.00 0.00 2.40
534 535 1.593787 CCTCGCCGGCATATCATCT 59.406 57.895 28.98 0.00 0.00 2.90
535 536 4.192000 CCTCGCCGGCATATCATC 57.808 61.111 28.98 0.00 0.00 2.92
555 556 4.638421 TGAAATTTACGAAGCCACCATAGG 59.362 41.667 0.00 0.00 0.00 2.57
556 557 5.811399 TGAAATTTACGAAGCCACCATAG 57.189 39.130 0.00 0.00 0.00 2.23
557 558 5.941058 TCTTGAAATTTACGAAGCCACCATA 59.059 36.000 0.00 0.00 0.00 2.74
558 559 4.764823 TCTTGAAATTTACGAAGCCACCAT 59.235 37.500 0.00 0.00 0.00 3.55
559 560 4.138290 TCTTGAAATTTACGAAGCCACCA 58.862 39.130 0.00 0.00 0.00 4.17
560 561 4.759516 TCTTGAAATTTACGAAGCCACC 57.240 40.909 0.00 0.00 0.00 4.61
561 562 5.938322 TCATCTTGAAATTTACGAAGCCAC 58.062 37.500 0.00 0.00 0.00 5.01
562 563 6.757897 ATCATCTTGAAATTTACGAAGCCA 57.242 33.333 0.00 0.00 0.00 4.75
563 564 7.324616 GCATATCATCTTGAAATTTACGAAGCC 59.675 37.037 0.00 0.00 0.00 4.35
564 565 7.324616 GGCATATCATCTTGAAATTTACGAAGC 59.675 37.037 0.00 0.00 0.00 3.86
565 566 7.531871 CGGCATATCATCTTGAAATTTACGAAG 59.468 37.037 0.00 0.00 0.00 3.79
566 567 7.351981 CGGCATATCATCTTGAAATTTACGAA 58.648 34.615 0.00 0.00 0.00 3.85
567 568 6.073276 CCGGCATATCATCTTGAAATTTACGA 60.073 38.462 0.00 0.00 0.00 3.43
568 569 6.079763 CCGGCATATCATCTTGAAATTTACG 58.920 40.000 0.00 0.00 0.00 3.18
569 570 5.858581 GCCGGCATATCATCTTGAAATTTAC 59.141 40.000 24.80 0.00 0.00 2.01
570 571 5.769662 AGCCGGCATATCATCTTGAAATTTA 59.230 36.000 31.54 0.00 0.00 1.40
571 572 4.586001 AGCCGGCATATCATCTTGAAATTT 59.414 37.500 31.54 0.00 0.00 1.82
572 573 4.147321 AGCCGGCATATCATCTTGAAATT 58.853 39.130 31.54 0.00 0.00 1.82
573 574 3.755378 GAGCCGGCATATCATCTTGAAAT 59.245 43.478 31.54 0.06 0.00 2.17
574 575 3.141398 GAGCCGGCATATCATCTTGAAA 58.859 45.455 31.54 0.00 0.00 2.69
575 576 2.104622 TGAGCCGGCATATCATCTTGAA 59.895 45.455 31.54 0.00 0.00 2.69
576 577 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
577 578 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
578 579 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
579 580 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
580 581 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
581 582 1.346062 AGACTGAGCCGGCATATCAT 58.654 50.000 31.54 13.17 0.00 2.45
582 583 1.123077 AAGACTGAGCCGGCATATCA 58.877 50.000 31.54 22.44 0.00 2.15
583 584 2.139118 GAAAGACTGAGCCGGCATATC 58.861 52.381 31.54 18.63 0.00 1.63
584 585 1.486310 TGAAAGACTGAGCCGGCATAT 59.514 47.619 31.54 8.11 0.00 1.78
585 586 0.901827 TGAAAGACTGAGCCGGCATA 59.098 50.000 31.54 16.21 0.00 3.14
586 587 0.392193 CTGAAAGACTGAGCCGGCAT 60.392 55.000 31.54 14.28 34.07 4.40
587 588 1.004560 CTGAAAGACTGAGCCGGCA 60.005 57.895 31.54 7.98 34.07 5.69
588 589 0.739112 CTCTGAAAGACTGAGCCGGC 60.739 60.000 21.89 21.89 38.67 6.13
589 590 0.108424 CCTCTGAAAGACTGAGCCGG 60.108 60.000 0.00 0.00 38.67 6.13
590 591 0.605589 ACCTCTGAAAGACTGAGCCG 59.394 55.000 0.00 0.00 38.67 5.52
591 592 1.943507 GCACCTCTGAAAGACTGAGCC 60.944 57.143 0.00 0.00 38.67 4.70
592 593 1.001860 AGCACCTCTGAAAGACTGAGC 59.998 52.381 0.00 0.00 38.67 4.26
593 594 2.298446 TGAGCACCTCTGAAAGACTGAG 59.702 50.000 0.00 0.00 38.67 3.35
594 595 2.319844 TGAGCACCTCTGAAAGACTGA 58.680 47.619 0.00 0.00 38.67 3.41
595 596 2.827800 TGAGCACCTCTGAAAGACTG 57.172 50.000 0.00 0.00 38.67 3.51
596 597 3.450457 CCTATGAGCACCTCTGAAAGACT 59.550 47.826 0.00 0.00 38.67 3.24
597 598 3.431486 CCCTATGAGCACCTCTGAAAGAC 60.431 52.174 0.00 0.00 38.67 3.01
598 599 2.768527 CCCTATGAGCACCTCTGAAAGA 59.231 50.000 0.00 0.00 43.69 2.52
599 600 2.158842 CCCCTATGAGCACCTCTGAAAG 60.159 54.545 0.00 0.00 0.00 2.62
600 601 1.839994 CCCCTATGAGCACCTCTGAAA 59.160 52.381 0.00 0.00 0.00 2.69
601 602 1.273838 ACCCCTATGAGCACCTCTGAA 60.274 52.381 0.00 0.00 0.00 3.02
602 603 0.339859 ACCCCTATGAGCACCTCTGA 59.660 55.000 0.00 0.00 0.00 3.27
603 604 1.967066 CTACCCCTATGAGCACCTCTG 59.033 57.143 0.00 0.00 0.00 3.35
604 605 1.133009 CCTACCCCTATGAGCACCTCT 60.133 57.143 0.00 0.00 0.00 3.69
605 606 1.343069 CCTACCCCTATGAGCACCTC 58.657 60.000 0.00 0.00 0.00 3.85
606 607 0.104934 CCCTACCCCTATGAGCACCT 60.105 60.000 0.00 0.00 0.00 4.00
607 608 0.400093 ACCCTACCCCTATGAGCACC 60.400 60.000 0.00 0.00 0.00 5.01
608 609 2.393630 TACCCTACCCCTATGAGCAC 57.606 55.000 0.00 0.00 0.00 4.40
609 610 2.902608 CATACCCTACCCCTATGAGCA 58.097 52.381 0.00 0.00 0.00 4.26
610 611 1.555533 GCATACCCTACCCCTATGAGC 59.444 57.143 0.00 0.00 0.00 4.26
611 612 1.825474 CGCATACCCTACCCCTATGAG 59.175 57.143 0.00 0.00 0.00 2.90
612 613 1.148446 ACGCATACCCTACCCCTATGA 59.852 52.381 0.00 0.00 0.00 2.15
613 614 1.640917 ACGCATACCCTACCCCTATG 58.359 55.000 0.00 0.00 0.00 2.23
614 615 3.245875 ACATACGCATACCCTACCCCTAT 60.246 47.826 0.00 0.00 0.00 2.57
615 616 2.110543 ACATACGCATACCCTACCCCTA 59.889 50.000 0.00 0.00 0.00 3.53
616 617 1.132945 ACATACGCATACCCTACCCCT 60.133 52.381 0.00 0.00 0.00 4.79
617 618 1.001633 CACATACGCATACCCTACCCC 59.998 57.143 0.00 0.00 0.00 4.95
618 619 1.607251 GCACATACGCATACCCTACCC 60.607 57.143 0.00 0.00 0.00 3.69
619 620 1.792006 GCACATACGCATACCCTACC 58.208 55.000 0.00 0.00 0.00 3.18
620 621 1.269413 ACGCACATACGCATACCCTAC 60.269 52.381 0.00 0.00 36.19 3.18
621 622 1.034356 ACGCACATACGCATACCCTA 58.966 50.000 0.00 0.00 36.19 3.53
622 623 0.177141 AACGCACATACGCATACCCT 59.823 50.000 0.00 0.00 36.19 4.34
623 624 0.580104 GAACGCACATACGCATACCC 59.420 55.000 0.00 0.00 36.19 3.69
624 625 1.282817 TGAACGCACATACGCATACC 58.717 50.000 0.00 0.00 36.19 2.73
625 626 3.121279 CCTATGAACGCACATACGCATAC 59.879 47.826 0.00 0.00 36.19 2.39
626 627 3.313690 CCTATGAACGCACATACGCATA 58.686 45.455 0.00 0.00 36.19 3.14
627 628 2.135139 CCTATGAACGCACATACGCAT 58.865 47.619 0.00 0.00 36.19 4.73
628 629 1.566404 CCTATGAACGCACATACGCA 58.434 50.000 0.00 0.00 36.19 5.24
629 630 0.859232 CCCTATGAACGCACATACGC 59.141 55.000 0.00 0.00 36.19 4.42
630 631 1.202486 ACCCCTATGAACGCACATACG 60.202 52.381 0.00 0.00 39.50 3.06
631 632 2.159014 TCACCCCTATGAACGCACATAC 60.159 50.000 0.00 0.00 0.00 2.39
632 633 2.102420 CTCACCCCTATGAACGCACATA 59.898 50.000 2.94 2.94 0.00 2.29
633 634 0.908910 TCACCCCTATGAACGCACAT 59.091 50.000 0.94 0.94 0.00 3.21
634 635 0.249120 CTCACCCCTATGAACGCACA 59.751 55.000 0.00 0.00 0.00 4.57
635 636 0.249398 ACTCACCCCTATGAACGCAC 59.751 55.000 0.00 0.00 0.00 5.34
636 637 0.249120 CACTCACCCCTATGAACGCA 59.751 55.000 0.00 0.00 0.00 5.24
637 638 0.249398 ACACTCACCCCTATGAACGC 59.751 55.000 0.00 0.00 0.00 4.84
638 639 3.717707 CATACACTCACCCCTATGAACG 58.282 50.000 0.00 0.00 0.00 3.95
639 640 3.467803 GCATACACTCACCCCTATGAAC 58.532 50.000 0.00 0.00 0.00 3.18
640 641 2.102420 CGCATACACTCACCCCTATGAA 59.898 50.000 0.00 0.00 0.00 2.57
641 642 1.686587 CGCATACACTCACCCCTATGA 59.313 52.381 0.00 0.00 0.00 2.15
642 643 1.873903 GCGCATACACTCACCCCTATG 60.874 57.143 0.30 0.00 0.00 2.23
643 644 0.393077 GCGCATACACTCACCCCTAT 59.607 55.000 0.30 0.00 0.00 2.57
644 645 1.820581 GCGCATACACTCACCCCTA 59.179 57.895 0.30 0.00 0.00 3.53
645 646 2.584608 GCGCATACACTCACCCCT 59.415 61.111 0.30 0.00 0.00 4.79
646 647 2.890474 CGCGCATACACTCACCCC 60.890 66.667 8.75 0.00 0.00 4.95
647 648 2.125673 ACGCGCATACACTCACCC 60.126 61.111 5.73 0.00 0.00 4.61
648 649 0.457166 TACACGCGCATACACTCACC 60.457 55.000 5.73 0.00 0.00 4.02
649 650 1.556564 ATACACGCGCATACACTCAC 58.443 50.000 5.73 0.00 0.00 3.51
650 651 3.003897 TCATATACACGCGCATACACTCA 59.996 43.478 5.73 0.00 0.00 3.41
651 652 3.561503 TCATATACACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
652 653 3.636282 TCATATACACGCGCATACACT 57.364 42.857 5.73 0.00 0.00 3.55
653 654 3.487942 TGTTCATATACACGCGCATACAC 59.512 43.478 5.73 1.12 0.00 2.90
654 655 3.487942 GTGTTCATATACACGCGCATACA 59.512 43.478 5.73 0.00 39.05 2.29
655 656 4.036215 GTGTTCATATACACGCGCATAC 57.964 45.455 5.73 0.00 39.05 2.39
663 664 7.813148 AGTACAGACACAAGTGTTCATATACAC 59.187 37.037 7.35 1.15 45.05 2.90
664 665 7.812669 CAGTACAGACACAAGTGTTCATATACA 59.187 37.037 7.35 0.00 45.05 2.29
665 666 8.027189 TCAGTACAGACACAAGTGTTCATATAC 58.973 37.037 7.35 6.67 45.05 1.47
666 667 8.117813 TCAGTACAGACACAAGTGTTCATATA 57.882 34.615 7.35 0.00 45.05 0.86
667 668 6.993079 TCAGTACAGACACAAGTGTTCATAT 58.007 36.000 7.35 0.00 45.05 1.78
668 669 6.399639 TCAGTACAGACACAAGTGTTCATA 57.600 37.500 7.35 0.00 45.05 2.15
669 670 5.276461 TCAGTACAGACACAAGTGTTCAT 57.724 39.130 7.35 0.00 45.05 2.57
670 671 4.729227 TCAGTACAGACACAAGTGTTCA 57.271 40.909 7.35 0.00 45.05 3.18
671 672 4.084328 GCATCAGTACAGACACAAGTGTTC 60.084 45.833 7.35 1.57 45.05 3.18
672 673 3.809832 GCATCAGTACAGACACAAGTGTT 59.190 43.478 7.35 0.00 45.05 3.32
674 675 3.657634 AGCATCAGTACAGACACAAGTG 58.342 45.455 0.00 0.00 0.00 3.16
675 676 5.468540 TTAGCATCAGTACAGACACAAGT 57.531 39.130 0.00 0.00 0.00 3.16
676 677 6.785488 TTTTAGCATCAGTACAGACACAAG 57.215 37.500 0.00 0.00 0.00 3.16
698 699 3.447229 CCTTGGACCGCCAGATTATTTTT 59.553 43.478 0.00 0.00 46.91 1.94
699 700 3.023832 CCTTGGACCGCCAGATTATTTT 58.976 45.455 0.00 0.00 46.91 1.82
700 701 2.241176 TCCTTGGACCGCCAGATTATTT 59.759 45.455 0.00 0.00 46.91 1.40
701 702 1.843851 TCCTTGGACCGCCAGATTATT 59.156 47.619 0.00 0.00 46.91 1.40
702 703 1.507140 TCCTTGGACCGCCAGATTAT 58.493 50.000 0.00 0.00 46.91 1.28
703 704 1.281419 TTCCTTGGACCGCCAGATTA 58.719 50.000 0.00 0.00 46.91 1.75
704 705 0.404040 TTTCCTTGGACCGCCAGATT 59.596 50.000 0.00 0.00 46.91 2.40
705 706 0.322546 GTTTCCTTGGACCGCCAGAT 60.323 55.000 0.00 0.00 46.91 2.90
706 707 1.072505 GTTTCCTTGGACCGCCAGA 59.927 57.895 0.00 0.00 46.91 3.86
707 708 1.971695 GGTTTCCTTGGACCGCCAG 60.972 63.158 0.00 0.00 46.91 4.85
708 709 2.075355 ATGGTTTCCTTGGACCGCCA 62.075 55.000 7.96 7.96 44.17 5.69
709 710 1.304134 ATGGTTTCCTTGGACCGCC 60.304 57.895 0.00 0.00 38.81 6.13
710 711 0.322546 AGATGGTTTCCTTGGACCGC 60.323 55.000 0.00 0.00 38.81 5.68
711 712 1.003118 TGAGATGGTTTCCTTGGACCG 59.997 52.381 0.00 0.00 38.81 4.79
712 713 2.879103 TGAGATGGTTTCCTTGGACC 57.121 50.000 0.00 0.00 36.45 4.46
713 714 4.827284 TCTTTTGAGATGGTTTCCTTGGAC 59.173 41.667 0.00 0.00 0.00 4.02
714 715 5.060427 TCTTTTGAGATGGTTTCCTTGGA 57.940 39.130 0.00 0.00 0.00 3.53
715 716 5.789643 TTCTTTTGAGATGGTTTCCTTGG 57.210 39.130 0.00 0.00 0.00 3.61
729 730 3.204382 AGTTGGGAGGAGGTTTCTTTTGA 59.796 43.478 0.00 0.00 0.00 2.69
1041 1371 2.125106 GAGATGGCCACCACCGAC 60.125 66.667 8.16 0.00 35.80 4.79
1506 1836 0.321122 CGAGCAGCTTCTGGAGGTTT 60.321 55.000 0.00 0.00 32.70 3.27
1591 1921 3.013921 TCGATTTGGTACCTCAATTGGC 58.986 45.455 14.36 0.00 0.00 4.52
1628 1958 8.599774 GCAGCAGCGGAATAAAAATAAAAATAA 58.400 29.630 0.00 0.00 0.00 1.40
1691 2026 6.098838 ACCATGCTGATCTATTCACTTCTACA 59.901 38.462 0.00 0.00 0.00 2.74
1692 2027 6.423302 CACCATGCTGATCTATTCACTTCTAC 59.577 42.308 0.00 0.00 0.00 2.59
1730 2065 1.634973 TCAGTGGATCCAGGATGCAAA 59.365 47.619 24.36 10.93 41.66 3.68
1840 2176 6.513180 TCAAACCTAAGAATACGGCATCTAG 58.487 40.000 0.00 0.00 0.00 2.43
1857 2193 3.130340 ACGTGAACAAAAGCATCAAACCT 59.870 39.130 0.00 0.00 0.00 3.50
1966 2319 3.055094 ACAGTATCATTGAGTGTCCCCAC 60.055 47.826 0.00 0.00 42.17 4.61
1967 2320 3.181329 ACAGTATCATTGAGTGTCCCCA 58.819 45.455 0.00 0.00 0.00 4.96
1968 2321 3.738281 CGACAGTATCATTGAGTGTCCCC 60.738 52.174 15.60 0.40 42.07 4.81
1969 2322 3.448686 CGACAGTATCATTGAGTGTCCC 58.551 50.000 15.60 0.90 42.07 4.46
1970 2323 2.860735 GCGACAGTATCATTGAGTGTCC 59.139 50.000 15.60 8.75 42.07 4.02
1971 2324 2.860735 GGCGACAGTATCATTGAGTGTC 59.139 50.000 13.05 13.05 41.79 3.67
1972 2325 2.497675 AGGCGACAGTATCATTGAGTGT 59.502 45.455 0.00 0.00 33.08 3.55
1973 2326 3.170791 AGGCGACAGTATCATTGAGTG 57.829 47.619 0.00 0.00 0.00 3.51
1974 2327 5.303078 AGATTAGGCGACAGTATCATTGAGT 59.697 40.000 0.00 0.00 0.00 3.41
1975 2328 5.777802 AGATTAGGCGACAGTATCATTGAG 58.222 41.667 0.00 0.00 0.00 3.02
1976 2329 5.791336 AGATTAGGCGACAGTATCATTGA 57.209 39.130 0.00 0.00 0.00 2.57
1977 2330 7.115520 CAGTTAGATTAGGCGACAGTATCATTG 59.884 40.741 0.00 0.00 0.00 2.82
1978 2331 7.148641 CAGTTAGATTAGGCGACAGTATCATT 58.851 38.462 0.00 0.00 0.00 2.57
1979 2332 6.265649 ACAGTTAGATTAGGCGACAGTATCAT 59.734 38.462 0.00 0.00 0.00 2.45
1980 2333 5.593095 ACAGTTAGATTAGGCGACAGTATCA 59.407 40.000 0.00 0.00 0.00 2.15
1981 2334 6.074544 ACAGTTAGATTAGGCGACAGTATC 57.925 41.667 0.00 0.00 0.00 2.24
1982 2335 5.593095 TGACAGTTAGATTAGGCGACAGTAT 59.407 40.000 0.00 0.00 0.00 2.12
1983 2336 4.945543 TGACAGTTAGATTAGGCGACAGTA 59.054 41.667 0.00 0.00 0.00 2.74
2082 2435 9.702253 TTCTTGGACTACAGTCTAGATTCTATT 57.298 33.333 9.15 0.00 44.20 1.73
2241 2905 4.022849 CGAGAATTCTGAAAGCCAAAAGGT 60.023 41.667 14.00 0.00 0.00 3.50
2264 2928 9.744468 ACCAAAGTATCAACACAAAATAGTTTC 57.256 29.630 0.00 0.00 30.04 2.78
2301 2966 5.918576 CACATCAACAGACTAACACGAACTA 59.081 40.000 0.00 0.00 0.00 2.24
2302 2967 4.745125 CACATCAACAGACTAACACGAACT 59.255 41.667 0.00 0.00 0.00 3.01
2370 3052 6.837048 ACTGTTAGGTTTAAAGGGTGTTCAAT 59.163 34.615 0.00 0.00 0.00 2.57
2523 3216 4.030216 AGAGGCAGTTTTTCCTGGAAAAA 58.970 39.130 32.80 32.80 45.38 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.