Multiple sequence alignment - TraesCS4B01G051100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G051100 chr4B 100.000 2363 0 0 1 2363 39734632 39736994 0.000000e+00 4364.0
1 TraesCS4B01G051100 chr4A 88.921 2094 107 44 317 2362 575807893 575809909 0.000000e+00 2466.0
2 TraesCS4B01G051100 chr4A 78.846 104 18 3 1962 2064 601285506 601285406 1.520000e-07 67.6
3 TraesCS4B01G051100 chr4D 88.274 1373 65 38 321 1652 27114333 27115650 0.000000e+00 1555.0
4 TraesCS4B01G051100 chr4D 87.431 724 54 19 1650 2362 27119720 27120417 0.000000e+00 798.0
5 TraesCS4B01G051100 chr6D 77.612 335 59 9 1 320 460401767 460402100 3.100000e-44 189.0
6 TraesCS4B01G051100 chr7B 100.000 30 0 0 1962 1991 66186713 66186684 3.280000e-04 56.5
7 TraesCS4B01G051100 chr3D 90.476 42 4 0 1964 2005 445789873 445789832 3.280000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G051100 chr4B 39734632 39736994 2362 False 4364 4364 100.000 1 2363 1 chr4B.!!$F1 2362
1 TraesCS4B01G051100 chr4A 575807893 575809909 2016 False 2466 2466 88.921 317 2362 1 chr4A.!!$F1 2045
2 TraesCS4B01G051100 chr4D 27114333 27115650 1317 False 1555 1555 88.274 321 1652 1 chr4D.!!$F1 1331
3 TraesCS4B01G051100 chr4D 27119720 27120417 697 False 798 798 87.431 1650 2362 1 chr4D.!!$F2 712

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
24 25 0.037303 TCGGACTGTCTACGAACCCT 59.963 55.0 7.85 0.0 33.21 4.34 F
125 126 0.259938 GCCCCATCCTGAACCATCTT 59.740 55.0 0.00 0.0 0.00 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1344 1432 0.036732 TTCACGAGCATTTGGAGCCT 59.963 50.0 0.0 0.0 0.0 4.58 R
2071 2163 0.103026 TCATCATCAACGCTCCTCCG 59.897 55.0 0.0 0.0 0.0 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 0.883833 TTCGGACTGTCTACGAACCC 59.116 55.000 14.88 0.00 41.12 4.11
24 25 0.037303 TCGGACTGTCTACGAACCCT 59.963 55.000 7.85 0.00 33.21 4.34
25 26 0.886563 CGGACTGTCTACGAACCCTT 59.113 55.000 7.85 0.00 0.00 3.95
26 27 2.086869 CGGACTGTCTACGAACCCTTA 58.913 52.381 7.85 0.00 0.00 2.69
27 28 2.686915 CGGACTGTCTACGAACCCTTAT 59.313 50.000 7.85 0.00 0.00 1.73
28 29 3.879295 CGGACTGTCTACGAACCCTTATA 59.121 47.826 7.85 0.00 0.00 0.98
29 30 4.518211 CGGACTGTCTACGAACCCTTATAT 59.482 45.833 7.85 0.00 0.00 0.86
30 31 5.334724 CGGACTGTCTACGAACCCTTATATC 60.335 48.000 7.85 0.00 0.00 1.63
31 32 5.048154 GGACTGTCTACGAACCCTTATATCC 60.048 48.000 7.85 0.00 0.00 2.59
32 33 4.518211 ACTGTCTACGAACCCTTATATCCG 59.482 45.833 0.00 0.00 0.00 4.18
33 34 4.464008 TGTCTACGAACCCTTATATCCGT 58.536 43.478 0.00 0.00 0.00 4.69
34 35 4.516698 TGTCTACGAACCCTTATATCCGTC 59.483 45.833 0.00 0.00 0.00 4.79
35 36 4.759183 GTCTACGAACCCTTATATCCGTCT 59.241 45.833 0.00 0.00 0.00 4.18
36 37 4.999950 TCTACGAACCCTTATATCCGTCTC 59.000 45.833 0.00 0.00 0.00 3.36
37 38 3.559069 ACGAACCCTTATATCCGTCTCA 58.441 45.455 0.00 0.00 0.00 3.27
38 39 3.956199 ACGAACCCTTATATCCGTCTCAA 59.044 43.478 0.00 0.00 0.00 3.02
39 40 4.403432 ACGAACCCTTATATCCGTCTCAAA 59.597 41.667 0.00 0.00 0.00 2.69
40 41 5.070047 ACGAACCCTTATATCCGTCTCAAAT 59.930 40.000 0.00 0.00 0.00 2.32
41 42 5.405571 CGAACCCTTATATCCGTCTCAAATG 59.594 44.000 0.00 0.00 0.00 2.32
42 43 5.888982 ACCCTTATATCCGTCTCAAATGT 57.111 39.130 0.00 0.00 0.00 2.71
43 44 6.989155 ACCCTTATATCCGTCTCAAATGTA 57.011 37.500 0.00 0.00 0.00 2.29
44 45 6.994221 ACCCTTATATCCGTCTCAAATGTAG 58.006 40.000 0.00 0.00 0.00 2.74
45 46 6.014499 ACCCTTATATCCGTCTCAAATGTAGG 60.014 42.308 0.00 0.00 0.00 3.18
46 47 6.398918 CCTTATATCCGTCTCAAATGTAGGG 58.601 44.000 0.00 0.00 0.00 3.53
47 48 6.210784 CCTTATATCCGTCTCAAATGTAGGGA 59.789 42.308 0.00 0.00 0.00 4.20
48 49 7.256190 CCTTATATCCGTCTCAAATGTAGGGAA 60.256 40.741 0.00 0.00 0.00 3.97
49 50 3.887621 TCCGTCTCAAATGTAGGGAAG 57.112 47.619 0.00 0.00 0.00 3.46
50 51 3.437213 TCCGTCTCAAATGTAGGGAAGA 58.563 45.455 0.00 0.00 0.00 2.87
51 52 4.030913 TCCGTCTCAAATGTAGGGAAGAT 58.969 43.478 0.00 0.00 0.00 2.40
52 53 5.205821 TCCGTCTCAAATGTAGGGAAGATA 58.794 41.667 0.00 0.00 0.00 1.98
53 54 5.839063 TCCGTCTCAAATGTAGGGAAGATAT 59.161 40.000 0.00 0.00 0.00 1.63
54 55 5.928839 CCGTCTCAAATGTAGGGAAGATATG 59.071 44.000 0.00 0.00 0.00 1.78
55 56 6.239317 CCGTCTCAAATGTAGGGAAGATATGA 60.239 42.308 0.00 0.00 0.00 2.15
56 57 6.865726 CGTCTCAAATGTAGGGAAGATATGAG 59.134 42.308 0.00 0.00 34.54 2.90
57 58 7.158021 GTCTCAAATGTAGGGAAGATATGAGG 58.842 42.308 0.00 0.00 34.14 3.86
58 59 6.270927 TCTCAAATGTAGGGAAGATATGAGGG 59.729 42.308 0.00 0.00 34.14 4.30
59 60 4.917906 AATGTAGGGAAGATATGAGGGC 57.082 45.455 0.00 0.00 0.00 5.19
60 61 3.637821 TGTAGGGAAGATATGAGGGCT 57.362 47.619 0.00 0.00 0.00 5.19
61 62 3.511477 TGTAGGGAAGATATGAGGGCTC 58.489 50.000 0.00 0.00 0.00 4.70
62 63 2.803285 AGGGAAGATATGAGGGCTCA 57.197 50.000 0.00 0.00 44.59 4.26
63 64 2.334023 AGGGAAGATATGAGGGCTCAC 58.666 52.381 0.00 0.00 43.11 3.51
64 65 1.001406 GGGAAGATATGAGGGCTCACG 59.999 57.143 0.00 0.00 43.11 4.35
65 66 1.001406 GGAAGATATGAGGGCTCACGG 59.999 57.143 0.00 0.00 43.11 4.94
66 67 1.964223 GAAGATATGAGGGCTCACGGA 59.036 52.381 0.00 0.00 43.11 4.69
67 68 2.317371 AGATATGAGGGCTCACGGAT 57.683 50.000 0.00 0.00 43.11 4.18
68 69 1.898472 AGATATGAGGGCTCACGGATG 59.102 52.381 0.00 0.00 43.11 3.51
69 70 0.322975 ATATGAGGGCTCACGGATGC 59.677 55.000 0.00 0.00 43.11 3.91
70 71 2.087462 TATGAGGGCTCACGGATGCG 62.087 60.000 4.58 4.58 43.11 4.73
100 101 4.814294 GCCAGTCCGCCACGTAGG 62.814 72.222 0.00 0.00 41.84 3.18
101 102 3.066190 CCAGTCCGCCACGTAGGA 61.066 66.667 8.04 5.48 41.22 2.94
113 114 4.603946 GTAGGACGCGGCCCCATC 62.604 72.222 31.68 12.30 0.00 3.51
121 122 3.727258 CGGCCCCATCCTGAACCA 61.727 66.667 0.00 0.00 0.00 3.67
122 123 3.018901 GGCCCCATCCTGAACCAT 58.981 61.111 0.00 0.00 0.00 3.55
123 124 1.152673 GGCCCCATCCTGAACCATC 60.153 63.158 0.00 0.00 0.00 3.51
124 125 1.649271 GGCCCCATCCTGAACCATCT 61.649 60.000 0.00 0.00 0.00 2.90
125 126 0.259938 GCCCCATCCTGAACCATCTT 59.740 55.000 0.00 0.00 0.00 2.40
126 127 1.342374 GCCCCATCCTGAACCATCTTT 60.342 52.381 0.00 0.00 0.00 2.52
127 128 2.889756 GCCCCATCCTGAACCATCTTTT 60.890 50.000 0.00 0.00 0.00 2.27
128 129 3.026694 CCCCATCCTGAACCATCTTTTC 58.973 50.000 0.00 0.00 0.00 2.29
129 130 3.309410 CCCCATCCTGAACCATCTTTTCT 60.309 47.826 0.00 0.00 0.00 2.52
130 131 3.950395 CCCATCCTGAACCATCTTTTCTC 59.050 47.826 0.00 0.00 0.00 2.87
131 132 4.324874 CCCATCCTGAACCATCTTTTCTCT 60.325 45.833 0.00 0.00 0.00 3.10
132 133 5.259632 CCATCCTGAACCATCTTTTCTCTT 58.740 41.667 0.00 0.00 0.00 2.85
133 134 5.713861 CCATCCTGAACCATCTTTTCTCTTT 59.286 40.000 0.00 0.00 0.00 2.52
134 135 6.127786 CCATCCTGAACCATCTTTTCTCTTTC 60.128 42.308 0.00 0.00 0.00 2.62
135 136 6.192970 TCCTGAACCATCTTTTCTCTTTCT 57.807 37.500 0.00 0.00 0.00 2.52
136 137 6.605119 TCCTGAACCATCTTTTCTCTTTCTT 58.395 36.000 0.00 0.00 0.00 2.52
137 138 7.062957 TCCTGAACCATCTTTTCTCTTTCTTT 58.937 34.615 0.00 0.00 0.00 2.52
138 139 8.217799 TCCTGAACCATCTTTTCTCTTTCTTTA 58.782 33.333 0.00 0.00 0.00 1.85
139 140 9.018582 CCTGAACCATCTTTTCTCTTTCTTTAT 57.981 33.333 0.00 0.00 0.00 1.40
164 165 9.962809 ATTCATTCTTTTCTCTCTCTCTTCATT 57.037 29.630 0.00 0.00 0.00 2.57
165 166 9.790344 TTCATTCTTTTCTCTCTCTCTTCATTT 57.210 29.630 0.00 0.00 0.00 2.32
166 167 9.790344 TCATTCTTTTCTCTCTCTCTTCATTTT 57.210 29.630 0.00 0.00 0.00 1.82
168 169 9.790344 ATTCTTTTCTCTCTCTCTTCATTTTCA 57.210 29.630 0.00 0.00 0.00 2.69
169 170 9.790344 TTCTTTTCTCTCTCTCTTCATTTTCAT 57.210 29.630 0.00 0.00 0.00 2.57
170 171 9.434420 TCTTTTCTCTCTCTCTTCATTTTCATC 57.566 33.333 0.00 0.00 0.00 2.92
171 172 9.217278 CTTTTCTCTCTCTCTTCATTTTCATCA 57.783 33.333 0.00 0.00 0.00 3.07
172 173 8.545229 TTTCTCTCTCTCTTCATTTTCATCAC 57.455 34.615 0.00 0.00 0.00 3.06
173 174 7.479352 TCTCTCTCTCTTCATTTTCATCACT 57.521 36.000 0.00 0.00 0.00 3.41
174 175 7.546358 TCTCTCTCTCTTCATTTTCATCACTC 58.454 38.462 0.00 0.00 0.00 3.51
175 176 7.178097 TCTCTCTCTCTTCATTTTCATCACTCA 59.822 37.037 0.00 0.00 0.00 3.41
176 177 7.095910 TCTCTCTCTTCATTTTCATCACTCAC 58.904 38.462 0.00 0.00 0.00 3.51
177 178 6.762333 TCTCTCTTCATTTTCATCACTCACA 58.238 36.000 0.00 0.00 0.00 3.58
178 179 7.392418 TCTCTCTTCATTTTCATCACTCACAT 58.608 34.615 0.00 0.00 0.00 3.21
179 180 8.534496 TCTCTCTTCATTTTCATCACTCACATA 58.466 33.333 0.00 0.00 0.00 2.29
180 181 8.484641 TCTCTTCATTTTCATCACTCACATAC 57.515 34.615 0.00 0.00 0.00 2.39
181 182 8.096414 TCTCTTCATTTTCATCACTCACATACA 58.904 33.333 0.00 0.00 0.00 2.29
182 183 8.620116 TCTTCATTTTCATCACTCACATACAA 57.380 30.769 0.00 0.00 0.00 2.41
183 184 8.724229 TCTTCATTTTCATCACTCACATACAAG 58.276 33.333 0.00 0.00 0.00 3.16
184 185 7.984422 TCATTTTCATCACTCACATACAAGT 57.016 32.000 0.00 0.00 0.00 3.16
185 186 9.500785 TTCATTTTCATCACTCACATACAAGTA 57.499 29.630 0.00 0.00 0.00 2.24
186 187 9.500785 TCATTTTCATCACTCACATACAAGTAA 57.499 29.630 0.00 0.00 0.00 2.24
187 188 9.546909 CATTTTCATCACTCACATACAAGTAAC 57.453 33.333 0.00 0.00 0.00 2.50
188 189 7.667043 TTTCATCACTCACATACAAGTAACC 57.333 36.000 0.00 0.00 0.00 2.85
189 190 5.407502 TCATCACTCACATACAAGTAACCG 58.592 41.667 0.00 0.00 0.00 4.44
190 191 4.182693 TCACTCACATACAAGTAACCGG 57.817 45.455 0.00 0.00 0.00 5.28
191 192 3.827876 TCACTCACATACAAGTAACCGGA 59.172 43.478 9.46 0.00 0.00 5.14
192 193 3.924686 CACTCACATACAAGTAACCGGAC 59.075 47.826 9.46 0.00 0.00 4.79
193 194 3.575256 ACTCACATACAAGTAACCGGACA 59.425 43.478 9.46 0.00 0.00 4.02
194 195 4.222145 ACTCACATACAAGTAACCGGACAT 59.778 41.667 9.46 0.00 0.00 3.06
195 196 5.419788 ACTCACATACAAGTAACCGGACATA 59.580 40.000 9.46 0.00 0.00 2.29
196 197 6.097839 ACTCACATACAAGTAACCGGACATAT 59.902 38.462 9.46 0.00 0.00 1.78
197 198 6.277605 TCACATACAAGTAACCGGACATATG 58.722 40.000 9.46 9.19 0.00 1.78
198 199 6.097129 TCACATACAAGTAACCGGACATATGA 59.903 38.462 9.46 0.00 0.00 2.15
199 200 6.420903 CACATACAAGTAACCGGACATATGAG 59.579 42.308 9.46 2.43 0.00 2.90
200 201 4.402056 ACAAGTAACCGGACATATGAGG 57.598 45.455 9.46 11.80 0.00 3.86
201 202 4.028131 ACAAGTAACCGGACATATGAGGA 58.972 43.478 9.46 0.00 0.00 3.71
202 203 4.468510 ACAAGTAACCGGACATATGAGGAA 59.531 41.667 9.46 1.91 0.00 3.36
203 204 4.939052 AGTAACCGGACATATGAGGAAG 57.061 45.455 9.46 0.00 0.00 3.46
204 205 4.543689 AGTAACCGGACATATGAGGAAGA 58.456 43.478 9.46 0.00 0.00 2.87
205 206 4.960469 AGTAACCGGACATATGAGGAAGAA 59.040 41.667 9.46 0.00 0.00 2.52
206 207 5.602978 AGTAACCGGACATATGAGGAAGAAT 59.397 40.000 9.46 0.00 0.00 2.40
207 208 6.781014 AGTAACCGGACATATGAGGAAGAATA 59.219 38.462 9.46 0.25 0.00 1.75
208 209 6.688073 AACCGGACATATGAGGAAGAATAT 57.312 37.500 9.46 0.00 0.00 1.28
209 210 6.042638 ACCGGACATATGAGGAAGAATATG 57.957 41.667 9.46 0.00 40.88 1.78
210 211 5.780282 ACCGGACATATGAGGAAGAATATGA 59.220 40.000 9.46 0.00 38.50 2.15
211 212 6.071108 ACCGGACATATGAGGAAGAATATGAG 60.071 42.308 9.46 2.01 38.50 2.90
212 213 6.336566 CGGACATATGAGGAAGAATATGAGG 58.663 44.000 10.38 0.00 38.50 3.86
213 214 6.153510 CGGACATATGAGGAAGAATATGAGGA 59.846 42.308 10.38 0.00 38.50 3.71
214 215 7.555087 GGACATATGAGGAAGAATATGAGGAG 58.445 42.308 10.38 0.00 38.50 3.69
215 216 7.180051 GGACATATGAGGAAGAATATGAGGAGT 59.820 40.741 10.38 0.00 38.50 3.85
216 217 7.905265 ACATATGAGGAAGAATATGAGGAGTG 58.095 38.462 10.38 0.00 38.50 3.51
217 218 7.512058 ACATATGAGGAAGAATATGAGGAGTGT 59.488 37.037 10.38 0.00 38.50 3.55
218 219 5.604758 TGAGGAAGAATATGAGGAGTGTG 57.395 43.478 0.00 0.00 0.00 3.82
219 220 4.406972 TGAGGAAGAATATGAGGAGTGTGG 59.593 45.833 0.00 0.00 0.00 4.17
220 221 3.135530 AGGAAGAATATGAGGAGTGTGGC 59.864 47.826 0.00 0.00 0.00 5.01
221 222 3.135530 GGAAGAATATGAGGAGTGTGGCT 59.864 47.826 0.00 0.00 0.00 4.75
222 223 3.834489 AGAATATGAGGAGTGTGGCTG 57.166 47.619 0.00 0.00 0.00 4.85
223 224 3.110705 AGAATATGAGGAGTGTGGCTGT 58.889 45.455 0.00 0.00 0.00 4.40
224 225 4.290093 AGAATATGAGGAGTGTGGCTGTA 58.710 43.478 0.00 0.00 0.00 2.74
225 226 4.100189 AGAATATGAGGAGTGTGGCTGTAC 59.900 45.833 0.00 0.00 0.00 2.90
226 227 0.532573 ATGAGGAGTGTGGCTGTACG 59.467 55.000 0.00 0.00 0.00 3.67
227 228 0.538746 TGAGGAGTGTGGCTGTACGA 60.539 55.000 0.00 0.00 0.00 3.43
228 229 0.601558 GAGGAGTGTGGCTGTACGAA 59.398 55.000 0.00 0.00 0.00 3.85
229 230 0.317479 AGGAGTGTGGCTGTACGAAC 59.683 55.000 0.00 0.00 0.00 3.95
230 231 1.007336 GGAGTGTGGCTGTACGAACG 61.007 60.000 0.00 0.00 0.00 3.95
231 232 1.006571 AGTGTGGCTGTACGAACGG 60.007 57.895 0.00 0.00 34.87 4.44
232 233 1.007038 GTGTGGCTGTACGAACGGA 60.007 57.895 0.00 0.00 33.42 4.69
233 234 0.389426 GTGTGGCTGTACGAACGGAT 60.389 55.000 0.00 0.00 33.42 4.18
234 235 1.135315 GTGTGGCTGTACGAACGGATA 60.135 52.381 0.00 0.00 33.42 2.59
235 236 1.545136 TGTGGCTGTACGAACGGATAA 59.455 47.619 0.00 0.00 33.42 1.75
236 237 2.029200 TGTGGCTGTACGAACGGATAAA 60.029 45.455 0.00 0.00 33.42 1.40
237 238 3.192466 GTGGCTGTACGAACGGATAAAT 58.808 45.455 0.00 0.00 33.42 1.40
238 239 4.142204 TGTGGCTGTACGAACGGATAAATA 60.142 41.667 0.00 0.00 33.42 1.40
239 240 4.805192 GTGGCTGTACGAACGGATAAATAA 59.195 41.667 0.00 0.00 33.42 1.40
240 241 5.045215 TGGCTGTACGAACGGATAAATAAG 58.955 41.667 0.00 0.00 33.42 1.73
241 242 5.163530 TGGCTGTACGAACGGATAAATAAGA 60.164 40.000 0.00 0.00 33.42 2.10
242 243 5.401674 GGCTGTACGAACGGATAAATAAGAG 59.598 44.000 0.00 0.00 33.42 2.85
243 244 5.107951 GCTGTACGAACGGATAAATAAGAGC 60.108 44.000 0.00 0.00 33.42 4.09
244 245 6.140303 TGTACGAACGGATAAATAAGAGCT 57.860 37.500 0.00 0.00 0.00 4.09
245 246 6.204359 TGTACGAACGGATAAATAAGAGCTC 58.796 40.000 5.27 5.27 0.00 4.09
246 247 5.258456 ACGAACGGATAAATAAGAGCTCA 57.742 39.130 17.77 0.00 0.00 4.26
247 248 5.657474 ACGAACGGATAAATAAGAGCTCAA 58.343 37.500 17.77 3.56 0.00 3.02
248 249 6.103997 ACGAACGGATAAATAAGAGCTCAAA 58.896 36.000 17.77 3.14 0.00 2.69
249 250 6.592607 ACGAACGGATAAATAAGAGCTCAAAA 59.407 34.615 17.77 0.24 0.00 2.44
250 251 6.900299 CGAACGGATAAATAAGAGCTCAAAAC 59.100 38.462 17.77 0.00 0.00 2.43
251 252 7.412563 CGAACGGATAAATAAGAGCTCAAAACA 60.413 37.037 17.77 0.00 0.00 2.83
252 253 7.308782 ACGGATAAATAAGAGCTCAAAACAG 57.691 36.000 17.77 2.52 0.00 3.16
253 254 7.103641 ACGGATAAATAAGAGCTCAAAACAGA 58.896 34.615 17.77 0.00 0.00 3.41
254 255 7.770897 ACGGATAAATAAGAGCTCAAAACAGAT 59.229 33.333 17.77 0.47 0.00 2.90
255 256 9.261180 CGGATAAATAAGAGCTCAAAACAGATA 57.739 33.333 17.77 0.00 0.00 1.98
263 264 8.715191 AAGAGCTCAAAACAGATACTAATCAG 57.285 34.615 17.77 0.00 34.28 2.90
264 265 7.271511 AGAGCTCAAAACAGATACTAATCAGG 58.728 38.462 17.77 0.00 34.28 3.86
265 266 5.819901 AGCTCAAAACAGATACTAATCAGGC 59.180 40.000 0.00 0.00 34.28 4.85
266 267 5.277058 GCTCAAAACAGATACTAATCAGGCG 60.277 44.000 0.00 0.00 34.28 5.52
267 268 5.730550 TCAAAACAGATACTAATCAGGCGT 58.269 37.500 0.00 0.00 34.28 5.68
268 269 5.580691 TCAAAACAGATACTAATCAGGCGTG 59.419 40.000 0.00 0.00 34.28 5.34
269 270 4.737855 AACAGATACTAATCAGGCGTGT 57.262 40.909 6.26 0.00 34.28 4.49
270 271 4.308899 ACAGATACTAATCAGGCGTGTC 57.691 45.455 6.26 0.00 34.28 3.67
271 272 3.068307 ACAGATACTAATCAGGCGTGTCC 59.932 47.826 6.26 0.00 34.28 4.02
272 273 2.293677 AGATACTAATCAGGCGTGTCCG 59.706 50.000 6.26 0.00 40.77 4.79
273 274 3.174496 GATACTAATCAGGCGTGTCCGC 61.174 54.545 6.26 0.00 44.39 5.54
282 283 2.739287 CGTGTCCGCGGGCTTTTA 60.739 61.111 32.34 7.51 0.00 1.52
283 284 2.736682 CGTGTCCGCGGGCTTTTAG 61.737 63.158 32.34 13.35 0.00 1.85
284 285 2.046700 TGTCCGCGGGCTTTTAGG 60.047 61.111 32.34 0.00 0.00 2.69
285 286 2.822701 GTCCGCGGGCTTTTAGGG 60.823 66.667 25.46 0.00 0.00 3.53
286 287 4.104183 TCCGCGGGCTTTTAGGGG 62.104 66.667 27.83 0.00 39.06 4.79
288 289 4.419921 CGCGGGCTTTTAGGGGGT 62.420 66.667 0.00 0.00 0.00 4.95
289 290 2.439701 GCGGGCTTTTAGGGGGTC 60.440 66.667 0.00 0.00 0.00 4.46
290 291 2.124860 CGGGCTTTTAGGGGGTCG 60.125 66.667 0.00 0.00 0.00 4.79
291 292 2.963101 CGGGCTTTTAGGGGGTCGT 61.963 63.158 0.00 0.00 0.00 4.34
292 293 1.616091 CGGGCTTTTAGGGGGTCGTA 61.616 60.000 0.00 0.00 0.00 3.43
293 294 0.841961 GGGCTTTTAGGGGGTCGTAT 59.158 55.000 0.00 0.00 0.00 3.06
294 295 1.213678 GGGCTTTTAGGGGGTCGTATT 59.786 52.381 0.00 0.00 0.00 1.89
295 296 2.357465 GGGCTTTTAGGGGGTCGTATTT 60.357 50.000 0.00 0.00 0.00 1.40
296 297 2.686405 GGCTTTTAGGGGGTCGTATTTG 59.314 50.000 0.00 0.00 0.00 2.32
297 298 2.098607 GCTTTTAGGGGGTCGTATTTGC 59.901 50.000 0.00 0.00 0.00 3.68
298 299 3.617284 CTTTTAGGGGGTCGTATTTGCT 58.383 45.455 0.00 0.00 0.00 3.91
299 300 4.773013 CTTTTAGGGGGTCGTATTTGCTA 58.227 43.478 0.00 0.00 0.00 3.49
300 301 5.374071 CTTTTAGGGGGTCGTATTTGCTAT 58.626 41.667 0.00 0.00 0.00 2.97
301 302 2.930826 AGGGGGTCGTATTTGCTATG 57.069 50.000 0.00 0.00 0.00 2.23
302 303 2.124411 AGGGGGTCGTATTTGCTATGT 58.876 47.619 0.00 0.00 0.00 2.29
303 304 2.508300 AGGGGGTCGTATTTGCTATGTT 59.492 45.455 0.00 0.00 0.00 2.71
304 305 2.876550 GGGGGTCGTATTTGCTATGTTC 59.123 50.000 0.00 0.00 0.00 3.18
305 306 2.542595 GGGGTCGTATTTGCTATGTTCG 59.457 50.000 0.00 0.00 0.00 3.95
306 307 2.542595 GGGTCGTATTTGCTATGTTCGG 59.457 50.000 0.00 0.00 0.00 4.30
307 308 3.192466 GGTCGTATTTGCTATGTTCGGT 58.808 45.455 0.00 0.00 0.00 4.69
308 309 3.619929 GGTCGTATTTGCTATGTTCGGTT 59.380 43.478 0.00 0.00 0.00 4.44
309 310 4.805192 GGTCGTATTTGCTATGTTCGGTTA 59.195 41.667 0.00 0.00 0.00 2.85
310 311 5.464389 GGTCGTATTTGCTATGTTCGGTTAT 59.536 40.000 0.00 0.00 0.00 1.89
311 312 6.642131 GGTCGTATTTGCTATGTTCGGTTATA 59.358 38.462 0.00 0.00 0.00 0.98
312 313 7.148853 GGTCGTATTTGCTATGTTCGGTTATAG 60.149 40.741 0.00 0.00 0.00 1.31
313 314 7.592533 GTCGTATTTGCTATGTTCGGTTATAGA 59.407 37.037 0.00 0.00 0.00 1.98
314 315 8.301720 TCGTATTTGCTATGTTCGGTTATAGAT 58.698 33.333 0.00 0.00 0.00 1.98
315 316 8.373256 CGTATTTGCTATGTTCGGTTATAGATG 58.627 37.037 0.00 0.00 0.00 2.90
316 317 6.539649 TTTGCTATGTTCGGTTATAGATGC 57.460 37.500 0.00 0.00 0.00 3.91
317 318 5.468540 TGCTATGTTCGGTTATAGATGCT 57.531 39.130 0.00 0.00 0.00 3.79
318 319 5.470368 TGCTATGTTCGGTTATAGATGCTC 58.530 41.667 0.00 0.00 0.00 4.26
319 320 5.243954 TGCTATGTTCGGTTATAGATGCTCT 59.756 40.000 0.00 0.00 0.00 4.09
324 325 6.379386 TGTTCGGTTATAGATGCTCTAATCG 58.621 40.000 0.00 0.00 31.96 3.34
326 327 7.094334 TGTTCGGTTATAGATGCTCTAATCGAT 60.094 37.037 8.19 0.00 36.25 3.59
353 354 2.105128 CGGTGGCATCTCGTCCTC 59.895 66.667 0.00 0.00 0.00 3.71
368 369 2.462927 CGTCCTCGTCGAAAATGTATCG 59.537 50.000 0.00 0.00 41.53 2.92
381 382 0.885879 TGTATCGCACCGACTGAGTT 59.114 50.000 0.00 0.00 39.18 3.01
426 427 8.915057 TTCATCTTTTGAATCTCTTGAAGACT 57.085 30.769 0.00 0.00 39.44 3.24
427 428 8.915057 TCATCTTTTGAATCTCTTGAAGACTT 57.085 30.769 0.00 0.00 36.65 3.01
428 429 8.781196 TCATCTTTTGAATCTCTTGAAGACTTG 58.219 33.333 0.00 0.00 36.65 3.16
429 430 8.781196 CATCTTTTGAATCTCTTGAAGACTTGA 58.219 33.333 0.00 0.00 36.65 3.02
430 431 8.737168 TCTTTTGAATCTCTTGAAGACTTGAA 57.263 30.769 0.00 0.00 36.65 2.69
440 441 0.387929 AAGACTTGAACGAGTGGCGA 59.612 50.000 0.00 0.00 44.57 5.54
441 442 0.318784 AGACTTGAACGAGTGGCGAC 60.319 55.000 0.00 0.00 44.57 5.19
442 443 1.606350 GACTTGAACGAGTGGCGACG 61.606 60.000 0.00 0.00 44.57 5.12
443 444 1.371267 CTTGAACGAGTGGCGACGA 60.371 57.895 0.00 0.00 44.57 4.20
444 445 1.606350 CTTGAACGAGTGGCGACGAC 61.606 60.000 0.00 0.00 44.57 4.34
445 446 3.164011 GAACGAGTGGCGACGACG 61.164 66.667 16.22 16.22 44.57 5.12
527 545 2.139118 GTTTCTGCCACTGTGACTCTC 58.861 52.381 9.86 0.00 0.00 3.20
528 546 1.709578 TTCTGCCACTGTGACTCTCT 58.290 50.000 9.86 0.00 0.00 3.10
546 564 3.502595 TCTCTGAGGCAGCGTATATGTAC 59.497 47.826 4.59 0.00 0.00 2.90
547 565 2.557056 TCTGAGGCAGCGTATATGTACC 59.443 50.000 0.00 0.00 0.00 3.34
550 568 3.756963 TGAGGCAGCGTATATGTACCTAG 59.243 47.826 0.00 0.00 0.00 3.02
551 569 3.757493 GAGGCAGCGTATATGTACCTAGT 59.243 47.826 0.00 0.00 0.00 2.57
552 570 4.914983 AGGCAGCGTATATGTACCTAGTA 58.085 43.478 0.00 0.00 0.00 1.82
553 571 4.699257 AGGCAGCGTATATGTACCTAGTAC 59.301 45.833 0.00 0.00 39.24 2.73
556 574 5.163774 GCAGCGTATATGTACCTAGTACTCC 60.164 48.000 0.00 0.00 39.49 3.85
557 575 5.353678 CAGCGTATATGTACCTAGTACTCCC 59.646 48.000 0.00 0.00 39.49 4.30
558 576 5.250313 AGCGTATATGTACCTAGTACTCCCT 59.750 44.000 0.00 0.00 39.49 4.20
560 578 6.112058 CGTATATGTACCTAGTACTCCCTCC 58.888 48.000 0.00 0.00 39.49 4.30
561 579 3.505480 ATGTACCTAGTACTCCCTCCG 57.495 52.381 0.00 0.00 39.49 4.63
562 580 2.481441 TGTACCTAGTACTCCCTCCGA 58.519 52.381 0.00 0.00 39.49 4.55
563 581 2.437281 TGTACCTAGTACTCCCTCCGAG 59.563 54.545 0.00 0.00 44.95 4.63
636 656 1.289109 ACGTACATGGTGCTCGTTGC 61.289 55.000 0.00 0.00 43.25 4.17
799 834 2.713154 GTTCACACACACGCCACC 59.287 61.111 0.00 0.00 0.00 4.61
818 876 2.960659 CGATCGAGCTGCCAGCAG 60.961 66.667 20.53 15.34 45.56 4.24
871 939 1.250840 GGCCACCAAATCCACTCACC 61.251 60.000 0.00 0.00 0.00 4.02
932 1005 1.992277 AGAAGAGCCATCCCACGCT 60.992 57.895 0.00 0.00 38.27 5.07
992 1080 2.358737 CCACTCCCGGACTTGCAC 60.359 66.667 0.73 0.00 0.00 4.57
1026 1114 0.744281 CCAAGTCCACCGCTTGTTTT 59.256 50.000 0.00 0.00 41.08 2.43
1375 1463 2.000447 GCTCGTGAAGTCCCAACATAC 59.000 52.381 0.00 0.00 0.00 2.39
1384 1472 5.045942 TGAAGTCCCAACATACAGCTGATTA 60.046 40.000 23.35 3.14 0.00 1.75
1385 1473 5.435686 AGTCCCAACATACAGCTGATTAA 57.564 39.130 23.35 2.81 0.00 1.40
1386 1474 5.815581 AGTCCCAACATACAGCTGATTAAA 58.184 37.500 23.35 0.05 0.00 1.52
1421 1509 4.379603 GCATGCATACTACTCCTACCTACG 60.380 50.000 14.21 0.00 0.00 3.51
1422 1510 4.428294 TGCATACTACTCCTACCTACGT 57.572 45.455 0.00 0.00 0.00 3.57
1423 1511 5.551305 TGCATACTACTCCTACCTACGTA 57.449 43.478 0.00 0.00 0.00 3.57
1481 1572 5.561679 TGTGTGCCATAGGTTTGTTGTATA 58.438 37.500 0.00 0.00 0.00 1.47
1521 1612 0.583438 GCATGTCGATGAACATCCCG 59.417 55.000 8.87 0.34 37.78 5.14
1575 1666 9.743937 TTACTGCAAATAATAAACGTTACTTCG 57.256 29.630 0.00 0.00 0.00 3.79
1577 1668 7.095102 ACTGCAAATAATAAACGTTACTTCGGT 60.095 33.333 0.00 0.00 34.94 4.69
1587 1678 3.063861 ACGTTACTTCGGTTTTGTCAACC 59.936 43.478 0.00 0.00 36.96 3.77
1611 1702 3.350219 TGTGACTGCTAATTTCTCCCC 57.650 47.619 0.00 0.00 0.00 4.81
1678 1769 6.701400 GCATGGTTTTCACTTTCAGTGTAATT 59.299 34.615 3.87 0.00 46.03 1.40
1683 1774 7.973944 GGTTTTCACTTTCAGTGTAATTTCACT 59.026 33.333 11.56 11.56 46.03 3.41
1719 1810 8.810327 AAATTTCGTTAATTTCGGTACATACG 57.190 30.769 0.00 0.00 41.49 3.06
1762 1853 5.400066 GGTAGTGCACCCAAATACAAATT 57.600 39.130 14.63 0.00 42.07 1.82
1763 1854 6.518208 GGTAGTGCACCCAAATACAAATTA 57.482 37.500 14.63 0.00 42.07 1.40
1764 1855 7.107639 GGTAGTGCACCCAAATACAAATTAT 57.892 36.000 14.63 0.00 42.07 1.28
1765 1856 7.552459 GGTAGTGCACCCAAATACAAATTATT 58.448 34.615 14.63 0.00 42.07 1.40
1766 1857 8.038351 GGTAGTGCACCCAAATACAAATTATTT 58.962 33.333 14.63 0.00 42.07 1.40
1815 1906 6.902416 AGATATTTGGTTGGATCCCAATGAAA 59.098 34.615 9.90 2.56 45.80 2.69
1818 1909 5.839517 TTGGTTGGATCCCAATGAAATTT 57.160 34.783 9.90 0.00 45.80 1.82
1828 1919 9.671279 GGATCCCAATGAAATTTAAGTGAAAAT 57.329 29.630 4.50 0.00 31.22 1.82
1846 1937 7.865889 AGTGAAAATTTTATTTTGTCCGAGACC 59.134 33.333 2.75 0.00 0.00 3.85
1953 2044 5.792741 TGGGTTCAAATTATTTTGGAGCTG 58.207 37.500 16.23 0.00 44.69 4.24
1964 2055 4.823276 GGAGCTGACATGACTCCG 57.177 61.111 0.00 0.00 40.59 4.63
1985 2076 4.142708 CCGATCTATGACTCTCTTCATCGG 60.143 50.000 2.86 2.86 37.82 4.18
1986 2077 4.454161 CGATCTATGACTCTCTTCATCGGT 59.546 45.833 0.00 0.00 37.42 4.69
2000 2091 1.328279 ATCGGTGATGGTCGATGCTA 58.672 50.000 0.00 0.00 43.37 3.49
2007 2098 1.344438 GATGGTCGATGCTATGGTCCA 59.656 52.381 0.00 0.00 31.84 4.02
2011 2102 1.137086 GTCGATGCTATGGTCCAGTGT 59.863 52.381 0.00 0.00 0.00 3.55
2024 2115 1.291877 CCAGTGTGACCTTAGCACGC 61.292 60.000 0.00 0.00 44.73 5.34
2025 2116 4.675404 GTGTGACCTTAGCACGCT 57.325 55.556 0.00 0.00 42.01 5.07
2026 2117 3.806591 GTGTGACCTTAGCACGCTA 57.193 52.632 0.00 0.00 42.01 4.26
2027 2118 1.347320 GTGTGACCTTAGCACGCTAC 58.653 55.000 0.00 0.00 42.01 3.58
2028 2119 1.067776 GTGTGACCTTAGCACGCTACT 60.068 52.381 0.00 0.00 42.01 2.57
2069 2161 0.109723 AAGTTTGCCCTGCTTCGGTA 59.890 50.000 0.00 0.00 0.00 4.02
2071 2163 0.240145 GTTTGCCCTGCTTCGGTAAC 59.760 55.000 0.00 0.00 0.00 2.50
2091 2183 1.863267 GGAGGAGCGTTGATGATGAG 58.137 55.000 0.00 0.00 0.00 2.90
2118 2219 2.357327 TCAATACTTGTGGTCGTCGG 57.643 50.000 0.00 0.00 0.00 4.79
2318 2420 8.980481 AGAGGGTAATACAAGAATAAACATGG 57.020 34.615 0.00 0.00 0.00 3.66
2362 2464 4.065789 GCCATGTAGCTACCACTAATTCC 58.934 47.826 21.01 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 0.883833 GGGTTCGTAGACAGTCCGAA 59.116 55.000 9.75 9.75 38.18 4.30
5 6 0.037303 AGGGTTCGTAGACAGTCCGA 59.963 55.000 0.00 0.00 34.32 4.55
6 7 0.886563 AAGGGTTCGTAGACAGTCCG 59.113 55.000 0.00 0.00 34.32 4.79
7 8 5.048154 GGATATAAGGGTTCGTAGACAGTCC 60.048 48.000 0.00 0.00 34.32 3.85
8 9 5.334724 CGGATATAAGGGTTCGTAGACAGTC 60.335 48.000 0.00 0.00 34.32 3.51
9 10 4.518211 CGGATATAAGGGTTCGTAGACAGT 59.482 45.833 0.00 0.00 34.32 3.55
10 11 4.518211 ACGGATATAAGGGTTCGTAGACAG 59.482 45.833 0.00 0.00 34.32 3.51
11 12 4.464008 ACGGATATAAGGGTTCGTAGACA 58.536 43.478 0.00 0.00 34.32 3.41
12 13 4.759183 AGACGGATATAAGGGTTCGTAGAC 59.241 45.833 0.00 0.00 34.32 2.59
13 14 4.978099 AGACGGATATAAGGGTTCGTAGA 58.022 43.478 0.00 0.00 0.00 2.59
14 15 4.758674 TGAGACGGATATAAGGGTTCGTAG 59.241 45.833 0.00 0.00 0.00 3.51
15 16 4.717877 TGAGACGGATATAAGGGTTCGTA 58.282 43.478 0.00 0.00 0.00 3.43
16 17 3.559069 TGAGACGGATATAAGGGTTCGT 58.441 45.455 0.00 0.00 0.00 3.85
17 18 4.579454 TTGAGACGGATATAAGGGTTCG 57.421 45.455 0.00 0.00 0.00 3.95
18 19 6.289064 ACATTTGAGACGGATATAAGGGTTC 58.711 40.000 0.00 0.00 0.00 3.62
19 20 6.248569 ACATTTGAGACGGATATAAGGGTT 57.751 37.500 0.00 0.00 0.00 4.11
20 21 5.888982 ACATTTGAGACGGATATAAGGGT 57.111 39.130 0.00 0.00 0.00 4.34
21 22 6.398918 CCTACATTTGAGACGGATATAAGGG 58.601 44.000 0.00 0.00 0.00 3.95
22 23 6.210784 TCCCTACATTTGAGACGGATATAAGG 59.789 42.308 0.00 0.00 0.00 2.69
23 24 7.228314 TCCCTACATTTGAGACGGATATAAG 57.772 40.000 0.00 0.00 0.00 1.73
24 25 7.507956 TCTTCCCTACATTTGAGACGGATATAA 59.492 37.037 0.00 0.00 0.00 0.98
25 26 7.008332 TCTTCCCTACATTTGAGACGGATATA 58.992 38.462 0.00 0.00 0.00 0.86
26 27 5.839063 TCTTCCCTACATTTGAGACGGATAT 59.161 40.000 0.00 0.00 0.00 1.63
27 28 5.205821 TCTTCCCTACATTTGAGACGGATA 58.794 41.667 0.00 0.00 0.00 2.59
28 29 4.030913 TCTTCCCTACATTTGAGACGGAT 58.969 43.478 0.00 0.00 0.00 4.18
29 30 3.437213 TCTTCCCTACATTTGAGACGGA 58.563 45.455 0.00 0.00 0.00 4.69
30 31 3.887621 TCTTCCCTACATTTGAGACGG 57.112 47.619 0.00 0.00 0.00 4.79
31 32 6.749139 TCATATCTTCCCTACATTTGAGACG 58.251 40.000 0.00 0.00 0.00 4.18
32 33 7.158021 CCTCATATCTTCCCTACATTTGAGAC 58.842 42.308 0.00 0.00 31.06 3.36
33 34 6.270927 CCCTCATATCTTCCCTACATTTGAGA 59.729 42.308 0.00 0.00 31.06 3.27
34 35 6.471146 CCCTCATATCTTCCCTACATTTGAG 58.529 44.000 0.00 0.00 0.00 3.02
35 36 5.221925 GCCCTCATATCTTCCCTACATTTGA 60.222 44.000 0.00 0.00 0.00 2.69
36 37 5.006386 GCCCTCATATCTTCCCTACATTTG 58.994 45.833 0.00 0.00 0.00 2.32
37 38 4.916424 AGCCCTCATATCTTCCCTACATTT 59.084 41.667 0.00 0.00 0.00 2.32
38 39 4.507342 AGCCCTCATATCTTCCCTACATT 58.493 43.478 0.00 0.00 0.00 2.71
39 40 4.100373 GAGCCCTCATATCTTCCCTACAT 58.900 47.826 0.00 0.00 0.00 2.29
40 41 3.116746 TGAGCCCTCATATCTTCCCTACA 60.117 47.826 0.00 0.00 34.14 2.74
41 42 3.259625 GTGAGCCCTCATATCTTCCCTAC 59.740 52.174 0.77 0.00 42.18 3.18
42 43 3.511477 GTGAGCCCTCATATCTTCCCTA 58.489 50.000 0.77 0.00 42.18 3.53
43 44 2.334023 GTGAGCCCTCATATCTTCCCT 58.666 52.381 0.77 0.00 42.18 4.20
44 45 1.001406 CGTGAGCCCTCATATCTTCCC 59.999 57.143 0.77 0.00 42.18 3.97
45 46 1.001406 CCGTGAGCCCTCATATCTTCC 59.999 57.143 0.77 0.00 42.18 3.46
46 47 1.964223 TCCGTGAGCCCTCATATCTTC 59.036 52.381 0.77 0.00 42.18 2.87
47 48 2.088104 TCCGTGAGCCCTCATATCTT 57.912 50.000 0.77 0.00 42.18 2.40
48 49 1.898472 CATCCGTGAGCCCTCATATCT 59.102 52.381 0.77 0.00 42.18 1.98
49 50 1.674221 GCATCCGTGAGCCCTCATATC 60.674 57.143 0.77 0.00 42.18 1.63
50 51 0.322975 GCATCCGTGAGCCCTCATAT 59.677 55.000 0.77 0.00 42.18 1.78
51 52 1.748403 GCATCCGTGAGCCCTCATA 59.252 57.895 0.77 0.00 42.18 2.15
52 53 2.507944 GCATCCGTGAGCCCTCAT 59.492 61.111 0.77 0.00 42.18 2.90
53 54 4.147449 CGCATCCGTGAGCCCTCA 62.147 66.667 0.00 0.00 37.24 3.86
83 84 4.814294 CCTACGTGGCGGACTGGC 62.814 72.222 0.00 0.00 45.12 4.85
84 85 3.066190 TCCTACGTGGCGGACTGG 61.066 66.667 0.00 0.00 35.26 4.00
85 86 2.181021 GTCCTACGTGGCGGACTG 59.819 66.667 19.88 0.00 44.90 3.51
86 87 3.437795 CGTCCTACGTGGCGGACT 61.438 66.667 22.63 0.00 45.88 3.85
96 97 4.603946 GATGGGGCCGCGTCCTAC 62.604 72.222 27.45 6.71 0.00 3.18
104 105 2.965716 GATGGTTCAGGATGGGGCCG 62.966 65.000 0.00 0.00 36.16 6.13
105 106 1.152673 GATGGTTCAGGATGGGGCC 60.153 63.158 0.00 0.00 36.16 5.80
106 107 0.259938 AAGATGGTTCAGGATGGGGC 59.740 55.000 0.00 0.00 36.16 5.80
107 108 2.834638 AAAGATGGTTCAGGATGGGG 57.165 50.000 0.00 0.00 36.16 4.96
108 109 3.950395 GAGAAAAGATGGTTCAGGATGGG 59.050 47.826 0.00 0.00 36.16 4.00
109 110 4.853007 AGAGAAAAGATGGTTCAGGATGG 58.147 43.478 0.00 0.00 36.16 3.51
110 111 6.658391 AGAAAGAGAAAAGATGGTTCAGGATG 59.342 38.462 0.00 0.00 37.54 3.51
111 112 6.788218 AGAAAGAGAAAAGATGGTTCAGGAT 58.212 36.000 0.00 0.00 0.00 3.24
112 113 6.192970 AGAAAGAGAAAAGATGGTTCAGGA 57.807 37.500 0.00 0.00 0.00 3.86
113 114 6.890979 AAGAAAGAGAAAAGATGGTTCAGG 57.109 37.500 0.00 0.00 0.00 3.86
138 139 9.962809 AATGAAGAGAGAGAGAAAAGAATGAAT 57.037 29.630 0.00 0.00 0.00 2.57
139 140 9.790344 AAATGAAGAGAGAGAGAAAAGAATGAA 57.210 29.630 0.00 0.00 0.00 2.57
140 141 9.790344 AAAATGAAGAGAGAGAGAAAAGAATGA 57.210 29.630 0.00 0.00 0.00 2.57
142 143 9.790344 TGAAAATGAAGAGAGAGAGAAAAGAAT 57.210 29.630 0.00 0.00 0.00 2.40
143 144 9.790344 ATGAAAATGAAGAGAGAGAGAAAAGAA 57.210 29.630 0.00 0.00 0.00 2.52
144 145 9.434420 GATGAAAATGAAGAGAGAGAGAAAAGA 57.566 33.333 0.00 0.00 0.00 2.52
145 146 9.217278 TGATGAAAATGAAGAGAGAGAGAAAAG 57.783 33.333 0.00 0.00 0.00 2.27
146 147 8.997323 GTGATGAAAATGAAGAGAGAGAGAAAA 58.003 33.333 0.00 0.00 0.00 2.29
147 148 8.373981 AGTGATGAAAATGAAGAGAGAGAGAAA 58.626 33.333 0.00 0.00 0.00 2.52
148 149 7.905265 AGTGATGAAAATGAAGAGAGAGAGAA 58.095 34.615 0.00 0.00 0.00 2.87
149 150 7.178097 TGAGTGATGAAAATGAAGAGAGAGAGA 59.822 37.037 0.00 0.00 0.00 3.10
150 151 7.276218 GTGAGTGATGAAAATGAAGAGAGAGAG 59.724 40.741 0.00 0.00 0.00 3.20
151 152 7.095910 GTGAGTGATGAAAATGAAGAGAGAGA 58.904 38.462 0.00 0.00 0.00 3.10
152 153 6.872547 TGTGAGTGATGAAAATGAAGAGAGAG 59.127 38.462 0.00 0.00 0.00 3.20
153 154 6.762333 TGTGAGTGATGAAAATGAAGAGAGA 58.238 36.000 0.00 0.00 0.00 3.10
154 155 7.612668 ATGTGAGTGATGAAAATGAAGAGAG 57.387 36.000 0.00 0.00 0.00 3.20
155 156 8.096414 TGTATGTGAGTGATGAAAATGAAGAGA 58.904 33.333 0.00 0.00 0.00 3.10
156 157 8.260270 TGTATGTGAGTGATGAAAATGAAGAG 57.740 34.615 0.00 0.00 0.00 2.85
157 158 8.620116 TTGTATGTGAGTGATGAAAATGAAGA 57.380 30.769 0.00 0.00 0.00 2.87
158 159 8.509690 ACTTGTATGTGAGTGATGAAAATGAAG 58.490 33.333 0.00 0.00 0.00 3.02
159 160 8.394971 ACTTGTATGTGAGTGATGAAAATGAA 57.605 30.769 0.00 0.00 0.00 2.57
160 161 7.984422 ACTTGTATGTGAGTGATGAAAATGA 57.016 32.000 0.00 0.00 0.00 2.57
161 162 9.546909 GTTACTTGTATGTGAGTGATGAAAATG 57.453 33.333 0.00 0.00 0.00 2.32
162 163 8.730680 GGTTACTTGTATGTGAGTGATGAAAAT 58.269 33.333 0.00 0.00 0.00 1.82
163 164 7.095397 CGGTTACTTGTATGTGAGTGATGAAAA 60.095 37.037 0.00 0.00 0.00 2.29
164 165 6.367695 CGGTTACTTGTATGTGAGTGATGAAA 59.632 38.462 0.00 0.00 0.00 2.69
165 166 5.867174 CGGTTACTTGTATGTGAGTGATGAA 59.133 40.000 0.00 0.00 0.00 2.57
166 167 5.407502 CGGTTACTTGTATGTGAGTGATGA 58.592 41.667 0.00 0.00 0.00 2.92
167 168 4.566759 CCGGTTACTTGTATGTGAGTGATG 59.433 45.833 0.00 0.00 0.00 3.07
168 169 4.464951 TCCGGTTACTTGTATGTGAGTGAT 59.535 41.667 0.00 0.00 0.00 3.06
169 170 3.827876 TCCGGTTACTTGTATGTGAGTGA 59.172 43.478 0.00 0.00 0.00 3.41
170 171 3.924686 GTCCGGTTACTTGTATGTGAGTG 59.075 47.826 0.00 0.00 0.00 3.51
171 172 3.575256 TGTCCGGTTACTTGTATGTGAGT 59.425 43.478 0.00 0.00 0.00 3.41
172 173 4.182693 TGTCCGGTTACTTGTATGTGAG 57.817 45.455 0.00 0.00 0.00 3.51
173 174 4.811969 ATGTCCGGTTACTTGTATGTGA 57.188 40.909 0.00 0.00 0.00 3.58
174 175 6.277605 TCATATGTCCGGTTACTTGTATGTG 58.722 40.000 0.00 0.00 0.00 3.21
175 176 6.462487 CCTCATATGTCCGGTTACTTGTATGT 60.462 42.308 0.00 0.00 0.00 2.29
176 177 5.926542 CCTCATATGTCCGGTTACTTGTATG 59.073 44.000 0.00 4.79 0.00 2.39
177 178 5.836898 TCCTCATATGTCCGGTTACTTGTAT 59.163 40.000 0.00 0.00 0.00 2.29
178 179 5.202765 TCCTCATATGTCCGGTTACTTGTA 58.797 41.667 0.00 0.00 0.00 2.41
179 180 4.028131 TCCTCATATGTCCGGTTACTTGT 58.972 43.478 0.00 0.00 0.00 3.16
180 181 4.665833 TCCTCATATGTCCGGTTACTTG 57.334 45.455 0.00 0.00 0.00 3.16
181 182 4.960469 TCTTCCTCATATGTCCGGTTACTT 59.040 41.667 0.00 0.00 0.00 2.24
182 183 4.543689 TCTTCCTCATATGTCCGGTTACT 58.456 43.478 0.00 0.00 0.00 2.24
183 184 4.931661 TCTTCCTCATATGTCCGGTTAC 57.068 45.455 0.00 0.00 0.00 2.50
184 185 7.453439 TCATATTCTTCCTCATATGTCCGGTTA 59.547 37.037 0.00 0.00 35.61 2.85
185 186 6.270000 TCATATTCTTCCTCATATGTCCGGTT 59.730 38.462 0.00 0.00 35.61 4.44
186 187 5.780282 TCATATTCTTCCTCATATGTCCGGT 59.220 40.000 0.00 0.00 35.61 5.28
187 188 6.286240 TCATATTCTTCCTCATATGTCCGG 57.714 41.667 1.90 0.00 35.61 5.14
188 189 6.153510 TCCTCATATTCTTCCTCATATGTCCG 59.846 42.308 1.90 0.00 35.61 4.79
189 190 7.180051 ACTCCTCATATTCTTCCTCATATGTCC 59.820 40.741 1.90 0.00 35.61 4.02
190 191 8.034215 CACTCCTCATATTCTTCCTCATATGTC 58.966 40.741 1.90 0.00 35.61 3.06
191 192 7.512058 ACACTCCTCATATTCTTCCTCATATGT 59.488 37.037 1.90 0.00 35.61 2.29
192 193 7.818446 CACACTCCTCATATTCTTCCTCATATG 59.182 40.741 0.00 0.00 35.48 1.78
193 194 7.038445 CCACACTCCTCATATTCTTCCTCATAT 60.038 40.741 0.00 0.00 0.00 1.78
194 195 6.268617 CCACACTCCTCATATTCTTCCTCATA 59.731 42.308 0.00 0.00 0.00 2.15
195 196 5.071519 CCACACTCCTCATATTCTTCCTCAT 59.928 44.000 0.00 0.00 0.00 2.90
196 197 4.406972 CCACACTCCTCATATTCTTCCTCA 59.593 45.833 0.00 0.00 0.00 3.86
197 198 4.742138 GCCACACTCCTCATATTCTTCCTC 60.742 50.000 0.00 0.00 0.00 3.71
198 199 3.135530 GCCACACTCCTCATATTCTTCCT 59.864 47.826 0.00 0.00 0.00 3.36
199 200 3.135530 AGCCACACTCCTCATATTCTTCC 59.864 47.826 0.00 0.00 0.00 3.46
200 201 4.125703 CAGCCACACTCCTCATATTCTTC 58.874 47.826 0.00 0.00 0.00 2.87
201 202 3.521126 ACAGCCACACTCCTCATATTCTT 59.479 43.478 0.00 0.00 0.00 2.52
202 203 3.110705 ACAGCCACACTCCTCATATTCT 58.889 45.455 0.00 0.00 0.00 2.40
203 204 3.550437 ACAGCCACACTCCTCATATTC 57.450 47.619 0.00 0.00 0.00 1.75
204 205 3.181475 CGTACAGCCACACTCCTCATATT 60.181 47.826 0.00 0.00 0.00 1.28
205 206 2.362397 CGTACAGCCACACTCCTCATAT 59.638 50.000 0.00 0.00 0.00 1.78
206 207 1.749063 CGTACAGCCACACTCCTCATA 59.251 52.381 0.00 0.00 0.00 2.15
207 208 0.532573 CGTACAGCCACACTCCTCAT 59.467 55.000 0.00 0.00 0.00 2.90
208 209 0.538746 TCGTACAGCCACACTCCTCA 60.539 55.000 0.00 0.00 0.00 3.86
209 210 0.601558 TTCGTACAGCCACACTCCTC 59.398 55.000 0.00 0.00 0.00 3.71
210 211 0.317479 GTTCGTACAGCCACACTCCT 59.683 55.000 0.00 0.00 0.00 3.69
211 212 1.007336 CGTTCGTACAGCCACACTCC 61.007 60.000 0.00 0.00 0.00 3.85
212 213 1.007336 CCGTTCGTACAGCCACACTC 61.007 60.000 0.00 0.00 0.00 3.51
213 214 1.006571 CCGTTCGTACAGCCACACT 60.007 57.895 0.00 0.00 0.00 3.55
214 215 0.389426 ATCCGTTCGTACAGCCACAC 60.389 55.000 0.00 0.00 0.00 3.82
215 216 1.175654 TATCCGTTCGTACAGCCACA 58.824 50.000 0.00 0.00 0.00 4.17
216 217 2.282701 TTATCCGTTCGTACAGCCAC 57.717 50.000 0.00 0.00 0.00 5.01
217 218 3.530265 ATTTATCCGTTCGTACAGCCA 57.470 42.857 0.00 0.00 0.00 4.75
218 219 5.284079 TCTTATTTATCCGTTCGTACAGCC 58.716 41.667 0.00 0.00 0.00 4.85
219 220 5.107951 GCTCTTATTTATCCGTTCGTACAGC 60.108 44.000 0.00 0.00 0.00 4.40
220 221 6.207213 AGCTCTTATTTATCCGTTCGTACAG 58.793 40.000 0.00 0.00 0.00 2.74
221 222 6.140303 AGCTCTTATTTATCCGTTCGTACA 57.860 37.500 0.00 0.00 0.00 2.90
222 223 6.204359 TGAGCTCTTATTTATCCGTTCGTAC 58.796 40.000 16.19 0.00 0.00 3.67
223 224 6.381481 TGAGCTCTTATTTATCCGTTCGTA 57.619 37.500 16.19 0.00 0.00 3.43
224 225 5.258456 TGAGCTCTTATTTATCCGTTCGT 57.742 39.130 16.19 0.00 0.00 3.85
225 226 6.583912 TTTGAGCTCTTATTTATCCGTTCG 57.416 37.500 16.19 0.00 0.00 3.95
226 227 7.748847 TGTTTTGAGCTCTTATTTATCCGTTC 58.251 34.615 16.19 0.00 0.00 3.95
227 228 7.606456 TCTGTTTTGAGCTCTTATTTATCCGTT 59.394 33.333 16.19 0.00 0.00 4.44
228 229 7.103641 TCTGTTTTGAGCTCTTATTTATCCGT 58.896 34.615 16.19 0.00 0.00 4.69
229 230 7.539712 TCTGTTTTGAGCTCTTATTTATCCG 57.460 36.000 16.19 0.00 0.00 4.18
237 238 9.809096 CTGATTAGTATCTGTTTTGAGCTCTTA 57.191 33.333 16.19 0.00 0.00 2.10
238 239 7.768120 CCTGATTAGTATCTGTTTTGAGCTCTT 59.232 37.037 16.19 0.00 0.00 2.85
239 240 7.271511 CCTGATTAGTATCTGTTTTGAGCTCT 58.728 38.462 16.19 0.00 0.00 4.09
240 241 6.018343 GCCTGATTAGTATCTGTTTTGAGCTC 60.018 42.308 6.82 6.82 0.00 4.09
241 242 5.819901 GCCTGATTAGTATCTGTTTTGAGCT 59.180 40.000 0.00 0.00 0.00 4.09
242 243 5.277058 CGCCTGATTAGTATCTGTTTTGAGC 60.277 44.000 0.00 0.00 0.00 4.26
243 244 5.812642 ACGCCTGATTAGTATCTGTTTTGAG 59.187 40.000 0.00 0.00 0.00 3.02
244 245 5.580691 CACGCCTGATTAGTATCTGTTTTGA 59.419 40.000 0.00 0.00 0.00 2.69
245 246 5.351465 ACACGCCTGATTAGTATCTGTTTTG 59.649 40.000 0.00 0.00 0.00 2.44
246 247 5.488341 ACACGCCTGATTAGTATCTGTTTT 58.512 37.500 0.00 0.00 0.00 2.43
247 248 5.086104 ACACGCCTGATTAGTATCTGTTT 57.914 39.130 0.00 0.00 0.00 2.83
248 249 4.441634 GGACACGCCTGATTAGTATCTGTT 60.442 45.833 0.00 0.00 0.00 3.16
249 250 3.068307 GGACACGCCTGATTAGTATCTGT 59.932 47.826 0.00 0.00 0.00 3.41
250 251 3.643763 GGACACGCCTGATTAGTATCTG 58.356 50.000 0.00 0.00 0.00 2.90
251 252 2.293677 CGGACACGCCTGATTAGTATCT 59.706 50.000 0.00 0.00 0.00 1.98
252 253 2.662700 CGGACACGCCTGATTAGTATC 58.337 52.381 0.00 0.00 0.00 2.24
253 254 2.795175 CGGACACGCCTGATTAGTAT 57.205 50.000 0.00 0.00 0.00 2.12
265 266 2.736682 CTAAAAGCCCGCGGACACG 61.737 63.158 30.73 11.36 44.63 4.49
266 267 2.396157 CCTAAAAGCCCGCGGACAC 61.396 63.158 30.73 16.13 0.00 3.67
267 268 2.046700 CCTAAAAGCCCGCGGACA 60.047 61.111 30.73 0.00 0.00 4.02
268 269 2.822701 CCCTAAAAGCCCGCGGAC 60.823 66.667 30.73 17.62 0.00 4.79
269 270 4.104183 CCCCTAAAAGCCCGCGGA 62.104 66.667 30.73 3.70 0.00 5.54
271 272 4.419921 ACCCCCTAAAAGCCCGCG 62.420 66.667 0.00 0.00 0.00 6.46
272 273 2.439701 GACCCCCTAAAAGCCCGC 60.440 66.667 0.00 0.00 0.00 6.13
273 274 1.616091 TACGACCCCCTAAAAGCCCG 61.616 60.000 0.00 0.00 0.00 6.13
274 275 0.841961 ATACGACCCCCTAAAAGCCC 59.158 55.000 0.00 0.00 0.00 5.19
275 276 2.686405 CAAATACGACCCCCTAAAAGCC 59.314 50.000 0.00 0.00 0.00 4.35
276 277 2.098607 GCAAATACGACCCCCTAAAAGC 59.901 50.000 0.00 0.00 0.00 3.51
277 278 3.617284 AGCAAATACGACCCCCTAAAAG 58.383 45.455 0.00 0.00 0.00 2.27
278 279 3.724732 AGCAAATACGACCCCCTAAAA 57.275 42.857 0.00 0.00 0.00 1.52
279 280 4.164604 ACATAGCAAATACGACCCCCTAAA 59.835 41.667 0.00 0.00 0.00 1.85
280 281 3.712733 ACATAGCAAATACGACCCCCTAA 59.287 43.478 0.00 0.00 0.00 2.69
281 282 3.311091 ACATAGCAAATACGACCCCCTA 58.689 45.455 0.00 0.00 0.00 3.53
282 283 2.124411 ACATAGCAAATACGACCCCCT 58.876 47.619 0.00 0.00 0.00 4.79
283 284 2.632987 ACATAGCAAATACGACCCCC 57.367 50.000 0.00 0.00 0.00 5.40
284 285 2.542595 CGAACATAGCAAATACGACCCC 59.457 50.000 0.00 0.00 0.00 4.95
285 286 2.542595 CCGAACATAGCAAATACGACCC 59.457 50.000 0.00 0.00 0.00 4.46
286 287 3.192466 ACCGAACATAGCAAATACGACC 58.808 45.455 0.00 0.00 0.00 4.79
287 288 4.852609 AACCGAACATAGCAAATACGAC 57.147 40.909 0.00 0.00 0.00 4.34
288 289 7.650890 TCTATAACCGAACATAGCAAATACGA 58.349 34.615 0.00 0.00 0.00 3.43
289 290 7.862741 TCTATAACCGAACATAGCAAATACG 57.137 36.000 0.00 0.00 0.00 3.06
290 291 8.169268 GCATCTATAACCGAACATAGCAAATAC 58.831 37.037 0.00 0.00 0.00 1.89
291 292 8.094548 AGCATCTATAACCGAACATAGCAAATA 58.905 33.333 0.00 0.00 0.00 1.40
292 293 6.936900 AGCATCTATAACCGAACATAGCAAAT 59.063 34.615 0.00 0.00 0.00 2.32
293 294 6.288294 AGCATCTATAACCGAACATAGCAAA 58.712 36.000 0.00 0.00 0.00 3.68
294 295 5.853936 AGCATCTATAACCGAACATAGCAA 58.146 37.500 0.00 0.00 0.00 3.91
295 296 5.468540 AGCATCTATAACCGAACATAGCA 57.531 39.130 0.00 0.00 0.00 3.49
311 312 8.940961 CGCTTCATTGAATCGATTAGAGCATCT 61.941 40.741 15.56 0.00 40.14 2.90
312 313 6.305639 GCTTCATTGAATCGATTAGAGCATC 58.694 40.000 11.38 0.00 0.00 3.91
313 314 5.107182 CGCTTCATTGAATCGATTAGAGCAT 60.107 40.000 15.56 0.00 33.80 3.79
314 315 4.209911 CGCTTCATTGAATCGATTAGAGCA 59.790 41.667 15.56 1.59 33.80 4.26
315 316 4.376819 CCGCTTCATTGAATCGATTAGAGC 60.377 45.833 20.74 12.31 33.80 4.09
316 317 4.747108 ACCGCTTCATTGAATCGATTAGAG 59.253 41.667 20.74 5.43 33.80 2.43
317 318 4.507756 CACCGCTTCATTGAATCGATTAGA 59.492 41.667 20.74 2.89 33.80 2.10
318 319 4.319046 CCACCGCTTCATTGAATCGATTAG 60.319 45.833 20.74 4.80 33.80 1.73
319 320 3.559655 CCACCGCTTCATTGAATCGATTA 59.440 43.478 20.74 0.00 33.80 1.75
324 325 0.810648 TGCCACCGCTTCATTGAATC 59.189 50.000 0.00 0.00 35.36 2.52
326 327 0.810648 GATGCCACCGCTTCATTGAA 59.189 50.000 0.00 0.00 38.66 2.69
353 354 1.330818 CGGTGCGATACATTTTCGACG 60.331 52.381 0.00 0.00 38.88 5.12
368 369 0.946221 CCACTCAACTCAGTCGGTGC 60.946 60.000 0.77 0.00 0.00 5.01
381 382 1.153765 CGATTGCTCTCGCCACTCA 60.154 57.895 0.00 0.00 34.43 3.41
423 424 1.606350 CGTCGCCACTCGTTCAAGTC 61.606 60.000 0.00 0.00 39.67 3.01
424 425 1.660575 CGTCGCCACTCGTTCAAGT 60.661 57.895 0.00 0.00 39.67 3.16
425 426 1.371267 TCGTCGCCACTCGTTCAAG 60.371 57.895 0.00 0.00 39.67 3.02
426 427 1.659335 GTCGTCGCCACTCGTTCAA 60.659 57.895 0.00 0.00 39.67 2.69
427 428 2.050714 GTCGTCGCCACTCGTTCA 60.051 61.111 0.00 0.00 39.67 3.18
428 429 3.164011 CGTCGTCGCCACTCGTTC 61.164 66.667 0.00 0.00 39.67 3.95
527 545 2.558795 AGGTACATATACGCTGCCTCAG 59.441 50.000 0.00 0.00 31.40 3.35
528 546 2.594131 AGGTACATATACGCTGCCTCA 58.406 47.619 0.00 0.00 31.40 3.86
556 574 1.403780 CCTTTCGGTTGTACTCGGAGG 60.404 57.143 10.23 4.19 0.00 4.30
557 575 1.271656 ACCTTTCGGTTGTACTCGGAG 59.728 52.381 2.83 2.83 42.13 4.63
558 576 1.000060 CACCTTTCGGTTGTACTCGGA 60.000 52.381 0.00 0.00 42.13 4.55
560 578 2.056577 GACACCTTTCGGTTGTACTCG 58.943 52.381 0.00 0.00 42.13 4.18
561 579 3.102052 TGACACCTTTCGGTTGTACTC 57.898 47.619 0.00 0.00 42.13 2.59
562 580 3.547054 TTGACACCTTTCGGTTGTACT 57.453 42.857 0.00 0.00 42.13 2.73
563 581 4.992951 ACTATTGACACCTTTCGGTTGTAC 59.007 41.667 0.00 0.00 42.13 2.90
636 656 7.067532 TGCTATATTGTGGAACTTTACAACG 57.932 36.000 0.00 0.00 39.36 4.10
799 834 3.260483 GCTGGCAGCTCGATCGTG 61.260 66.667 31.37 14.19 38.45 4.35
818 876 3.582164 AGAGGTGTCCCAGGAGATATTC 58.418 50.000 0.00 0.00 0.00 1.75
886 959 4.080356 TGGCTGTCTGGAGCATTTATAGTT 60.080 41.667 0.00 0.00 41.08 2.24
902 975 1.375098 GCTCTTCTGGCATGGCTGTC 61.375 60.000 21.08 5.37 0.00 3.51
932 1005 2.092323 TCTTGTAGCTTAGCTCGCAGA 58.908 47.619 11.09 7.52 40.44 4.26
992 1080 2.257286 CTTGGACGCCATTGCTTCGG 62.257 60.000 0.00 0.00 36.66 4.30
1344 1432 0.036732 TTCACGAGCATTTGGAGCCT 59.963 50.000 0.00 0.00 0.00 4.58
1421 1509 3.841643 AGCACACCAATGTACGTACTAC 58.158 45.455 25.12 3.47 36.72 2.73
1422 1510 4.524316 AAGCACACCAATGTACGTACTA 57.476 40.909 25.12 12.85 36.72 1.82
1423 1511 3.396260 AAGCACACCAATGTACGTACT 57.604 42.857 25.12 9.27 36.72 2.73
1481 1572 3.124636 GCCAATCAACGAAACATCTACGT 59.875 43.478 0.00 0.00 41.97 3.57
1521 1612 2.427506 ACAACTCTGCGATTTCCCTTC 58.572 47.619 0.00 0.00 0.00 3.46
1575 1666 1.066303 TCACATGCGGTTGACAAAACC 59.934 47.619 0.00 0.00 36.96 3.27
1577 1668 2.020720 AGTCACATGCGGTTGACAAAA 58.979 42.857 14.50 0.00 33.03 2.44
1611 1702 6.682423 TCACATTTATGCTTGGACATACAG 57.318 37.500 0.00 0.00 32.32 2.74
1695 1786 7.277539 TCCGTATGTACCGAAATTAACGAAATT 59.722 33.333 6.54 0.00 39.56 1.82
1696 1787 6.756074 TCCGTATGTACCGAAATTAACGAAAT 59.244 34.615 6.54 0.00 0.00 2.17
1697 1788 6.096036 TCCGTATGTACCGAAATTAACGAAA 58.904 36.000 6.54 0.00 0.00 3.46
1698 1789 5.645624 TCCGTATGTACCGAAATTAACGAA 58.354 37.500 6.54 0.00 0.00 3.85
1699 1790 5.242069 TCCGTATGTACCGAAATTAACGA 57.758 39.130 6.54 0.00 0.00 3.85
1700 1791 5.947503 TTCCGTATGTACCGAAATTAACG 57.052 39.130 0.00 0.00 0.00 3.18
1701 1792 8.006027 GCTATTTCCGTATGTACCGAAATTAAC 58.994 37.037 17.97 9.35 41.20 2.01
1828 1919 7.989416 ATTAGTGGTCTCGGACAAAATAAAA 57.011 32.000 6.41 0.00 33.68 1.52
1832 1923 5.585047 GCTAATTAGTGGTCTCGGACAAAAT 59.415 40.000 13.91 0.00 33.68 1.82
1833 1924 4.933400 GCTAATTAGTGGTCTCGGACAAAA 59.067 41.667 13.91 0.00 33.68 2.44
1866 1957 8.807948 AACTTTTCTTCTTATAGGCATTGCTA 57.192 30.769 8.82 0.00 0.00 3.49
1867 1958 7.709149 AACTTTTCTTCTTATAGGCATTGCT 57.291 32.000 8.82 0.00 0.00 3.91
1873 1964 9.529325 AAAACACAAACTTTTCTTCTTATAGGC 57.471 29.630 0.00 0.00 0.00 3.93
1878 1969 9.581099 GATGGAAAACACAAACTTTTCTTCTTA 57.419 29.630 0.00 0.00 37.63 2.10
1902 1993 2.817844 GAGCCAAGTTAACGGTTTGGAT 59.182 45.455 22.70 18.53 42.77 3.41
1953 2044 4.759693 AGAGTCATAGATCGGAGTCATGTC 59.240 45.833 16.84 0.00 36.22 3.06
1964 2055 5.471797 TCACCGATGAAGAGAGTCATAGATC 59.528 44.000 0.00 0.00 38.38 2.75
1985 2076 2.408050 GACCATAGCATCGACCATCAC 58.592 52.381 0.00 0.00 0.00 3.06
1986 2077 1.344438 GGACCATAGCATCGACCATCA 59.656 52.381 0.00 0.00 0.00 3.07
2007 2098 1.067776 GTAGCGTGCTAAGGTCACACT 60.068 52.381 2.62 0.00 34.27 3.55
2011 2102 3.323243 GAAAAGTAGCGTGCTAAGGTCA 58.677 45.455 2.62 0.00 0.00 4.02
2071 2163 0.103026 TCATCATCAACGCTCCTCCG 59.897 55.000 0.00 0.00 0.00 4.63
2192 2294 6.959671 TTTTTGCACGAGAAACTTTCAATT 57.040 29.167 4.34 0.00 0.00 2.32
2218 2320 8.677300 TCCAATCTATTCATTGTGCTTCTTAAC 58.323 33.333 0.00 0.00 32.61 2.01
2271 2373 5.357878 TCTTTCCAATCTATTCAATGCGCTT 59.642 36.000 9.73 0.00 0.00 4.68
2318 2420 4.681483 GCCATTAGTTTTGTGCTTCTTGAC 59.319 41.667 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.