Multiple sequence alignment - TraesCS4B01G051000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G051000 chr4B 100.000 2981 0 0 1 2981 39312189 39309209 0.000000e+00 5505.0
1 TraesCS4B01G051000 chr4B 96.429 392 13 1 1 392 629957542 629957932 0.000000e+00 645.0
2 TraesCS4B01G051000 chr4B 96.173 392 13 2 1 392 174041823 174041434 9.010000e-180 640.0
3 TraesCS4B01G051000 chr4D 89.283 2286 116 49 391 2631 26935193 26932992 0.000000e+00 2745.0
4 TraesCS4B01G051000 chr4D 96.429 392 12 2 1 392 8274810 8274421 0.000000e+00 645.0
5 TraesCS4B01G051000 chr4A 87.406 2120 129 65 391 2448 575803581 575801538 0.000000e+00 2309.0
6 TraesCS4B01G051000 chr6B 96.939 392 12 0 1 392 21063657 21064048 0.000000e+00 658.0
7 TraesCS4B01G051000 chr6B 87.636 550 33 5 902 1450 85793984 85793469 9.140000e-170 606.0
8 TraesCS4B01G051000 chr1B 96.684 392 12 1 1 392 269218651 269218261 0.000000e+00 651.0
9 TraesCS4B01G051000 chr1B 84.337 83 11 2 2689 2771 537333087 537333007 2.460000e-11 80.5
10 TraesCS4B01G051000 chr3B 88.909 550 26 5 902 1450 9682539 9682024 0.000000e+00 645.0
11 TraesCS4B01G051000 chr2B 96.429 392 13 1 1 392 472911765 472911375 0.000000e+00 645.0
12 TraesCS4B01G051000 chr2B 96.173 392 15 0 1 392 156589061 156589452 2.510000e-180 641.0
13 TraesCS4B01G051000 chr2B 88.000 550 31 5 902 1450 50160717 50160202 4.220000e-173 617.0
14 TraesCS4B01G051000 chr7B 96.173 392 14 1 1 392 211371088 211370698 9.010000e-180 640.0
15 TraesCS4B01G051000 chr5B 96.173 392 14 1 1 392 710358485 710358095 9.010000e-180 640.0
16 TraesCS4B01G051000 chr5B 88.545 550 28 5 902 1450 302860953 302860438 4.190000e-178 634.0
17 TraesCS4B01G051000 chr3A 88.364 550 29 8 902 1450 540571061 540570546 1.950000e-176 628.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G051000 chr4B 39309209 39312189 2980 True 5505 5505 100.000 1 2981 1 chr4B.!!$R1 2980
1 TraesCS4B01G051000 chr4D 26932992 26935193 2201 True 2745 2745 89.283 391 2631 1 chr4D.!!$R2 2240
2 TraesCS4B01G051000 chr4A 575801538 575803581 2043 True 2309 2309 87.406 391 2448 1 chr4A.!!$R1 2057
3 TraesCS4B01G051000 chr6B 85793469 85793984 515 True 606 606 87.636 902 1450 1 chr6B.!!$R1 548
4 TraesCS4B01G051000 chr3B 9682024 9682539 515 True 645 645 88.909 902 1450 1 chr3B.!!$R1 548
5 TraesCS4B01G051000 chr2B 50160202 50160717 515 True 617 617 88.000 902 1450 1 chr2B.!!$R1 548
6 TraesCS4B01G051000 chr5B 302860438 302860953 515 True 634 634 88.545 902 1450 1 chr5B.!!$R1 548
7 TraesCS4B01G051000 chr3A 540570546 540571061 515 True 628 628 88.364 902 1450 1 chr3A.!!$R1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
44 45 0.035317 TGTGGATGTGTGTCTCTGGC 59.965 55.0 0.00 0.0 0.00 4.85 F
45 46 0.035317 GTGGATGTGTGTCTCTGGCA 59.965 55.0 0.00 0.0 0.00 4.92 F
188 189 0.108774 GTCCTATGGGGCCTTAGCAC 59.891 60.0 0.84 0.0 43.97 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1095 1127 1.295423 CGGGTTGACGAAGGTGGAT 59.705 57.895 0.0 0.0 35.47 3.41 R
1734 1766 1.515020 CAGCTCCACCTCCTCGAAG 59.485 63.158 0.0 0.0 0.00 3.79 R
2176 2251 0.546267 ACCACAGCAGGACCAGATCT 60.546 55.000 0.0 0.0 0.00 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.665777 CGTCTAGCATCGTTGGTGG 58.334 57.895 8.40 5.61 34.79 4.61
22 23 0.806102 CGTCTAGCATCGTTGGTGGG 60.806 60.000 8.40 2.07 34.79 4.61
23 24 1.090052 GTCTAGCATCGTTGGTGGGC 61.090 60.000 8.40 3.19 34.79 5.36
24 25 2.125310 TAGCATCGTTGGTGGGCG 60.125 61.111 8.40 0.00 34.79 6.13
25 26 2.852495 CTAGCATCGTTGGTGGGCGT 62.852 60.000 8.40 0.00 34.79 5.68
26 27 4.101790 GCATCGTTGGTGGGCGTG 62.102 66.667 0.00 0.00 0.00 5.34
27 28 2.668212 CATCGTTGGTGGGCGTGT 60.668 61.111 0.00 0.00 0.00 4.49
28 29 2.668212 ATCGTTGGTGGGCGTGTG 60.668 61.111 0.00 0.00 0.00 3.82
29 30 4.920112 TCGTTGGTGGGCGTGTGG 62.920 66.667 0.00 0.00 0.00 4.17
30 31 4.920112 CGTTGGTGGGCGTGTGGA 62.920 66.667 0.00 0.00 0.00 4.02
31 32 2.282180 GTTGGTGGGCGTGTGGAT 60.282 61.111 0.00 0.00 0.00 3.41
32 33 2.282110 TTGGTGGGCGTGTGGATG 60.282 61.111 0.00 0.00 0.00 3.51
33 34 3.126703 TTGGTGGGCGTGTGGATGT 62.127 57.895 0.00 0.00 0.00 3.06
34 35 3.055719 GGTGGGCGTGTGGATGTG 61.056 66.667 0.00 0.00 0.00 3.21
35 36 2.281484 GTGGGCGTGTGGATGTGT 60.281 61.111 0.00 0.00 0.00 3.72
36 37 2.281414 TGGGCGTGTGGATGTGTG 60.281 61.111 0.00 0.00 0.00 3.82
37 38 2.281484 GGGCGTGTGGATGTGTGT 60.281 61.111 0.00 0.00 0.00 3.72
38 39 2.325082 GGGCGTGTGGATGTGTGTC 61.325 63.158 0.00 0.00 0.00 3.67
39 40 1.301716 GGCGTGTGGATGTGTGTCT 60.302 57.895 0.00 0.00 0.00 3.41
40 41 1.291877 GGCGTGTGGATGTGTGTCTC 61.292 60.000 0.00 0.00 0.00 3.36
41 42 0.319900 GCGTGTGGATGTGTGTCTCT 60.320 55.000 0.00 0.00 0.00 3.10
42 43 1.422388 CGTGTGGATGTGTGTCTCTG 58.578 55.000 0.00 0.00 0.00 3.35
43 44 1.800805 GTGTGGATGTGTGTCTCTGG 58.199 55.000 0.00 0.00 0.00 3.86
44 45 0.035317 TGTGGATGTGTGTCTCTGGC 59.965 55.000 0.00 0.00 0.00 4.85
45 46 0.035317 GTGGATGTGTGTCTCTGGCA 59.965 55.000 0.00 0.00 0.00 4.92
46 47 0.322648 TGGATGTGTGTCTCTGGCAG 59.677 55.000 8.58 8.58 0.00 4.85
47 48 0.610174 GGATGTGTGTCTCTGGCAGA 59.390 55.000 17.68 17.68 0.00 4.26
48 49 1.209019 GGATGTGTGTCTCTGGCAGAT 59.791 52.381 19.11 0.00 32.08 2.90
49 50 2.548875 GATGTGTGTCTCTGGCAGATC 58.451 52.381 19.11 14.40 32.08 2.75
50 51 1.637338 TGTGTGTCTCTGGCAGATCT 58.363 50.000 19.11 0.00 32.08 2.75
51 52 2.807676 TGTGTGTCTCTGGCAGATCTA 58.192 47.619 19.11 3.87 32.08 1.98
52 53 3.369175 TGTGTGTCTCTGGCAGATCTAT 58.631 45.455 19.11 0.00 32.08 1.98
53 54 3.382865 TGTGTGTCTCTGGCAGATCTATC 59.617 47.826 19.11 8.52 32.08 2.08
54 55 3.636300 GTGTGTCTCTGGCAGATCTATCT 59.364 47.826 19.11 0.00 37.72 1.98
55 56 4.099266 GTGTGTCTCTGGCAGATCTATCTT 59.901 45.833 19.11 0.00 34.22 2.40
56 57 4.713814 TGTGTCTCTGGCAGATCTATCTTT 59.286 41.667 19.11 0.00 34.22 2.52
57 58 5.049167 GTGTCTCTGGCAGATCTATCTTTG 58.951 45.833 19.11 2.82 34.22 2.77
58 59 4.100653 TGTCTCTGGCAGATCTATCTTTGG 59.899 45.833 19.11 2.03 34.22 3.28
59 60 4.100808 GTCTCTGGCAGATCTATCTTTGGT 59.899 45.833 19.11 0.00 34.22 3.67
60 61 4.100653 TCTCTGGCAGATCTATCTTTGGTG 59.899 45.833 19.11 1.26 34.22 4.17
61 62 3.135348 TCTGGCAGATCTATCTTTGGTGG 59.865 47.826 14.43 0.00 34.22 4.61
62 63 3.114606 TGGCAGATCTATCTTTGGTGGA 58.885 45.455 0.00 0.00 34.22 4.02
63 64 3.718434 TGGCAGATCTATCTTTGGTGGAT 59.282 43.478 0.00 0.00 34.22 3.41
64 65 4.166725 TGGCAGATCTATCTTTGGTGGATT 59.833 41.667 0.00 0.00 34.22 3.01
65 66 5.136105 GGCAGATCTATCTTTGGTGGATTT 58.864 41.667 0.00 0.00 34.22 2.17
66 67 5.009410 GGCAGATCTATCTTTGGTGGATTTG 59.991 44.000 0.00 0.00 34.22 2.32
67 68 5.506982 GCAGATCTATCTTTGGTGGATTTGC 60.507 44.000 0.00 4.53 37.36 3.68
68 69 5.826737 CAGATCTATCTTTGGTGGATTTGCT 59.173 40.000 0.00 0.00 34.22 3.91
69 70 6.017275 CAGATCTATCTTTGGTGGATTTGCTC 60.017 42.308 0.00 0.00 34.22 4.26
70 71 4.191544 TCTATCTTTGGTGGATTTGCTCG 58.808 43.478 0.00 0.00 0.00 5.03
71 72 1.533625 TCTTTGGTGGATTTGCTCGG 58.466 50.000 0.00 0.00 0.00 4.63
72 73 1.073125 TCTTTGGTGGATTTGCTCGGA 59.927 47.619 0.00 0.00 0.00 4.55
73 74 2.094675 CTTTGGTGGATTTGCTCGGAT 58.905 47.619 0.00 0.00 0.00 4.18
74 75 1.750193 TTGGTGGATTTGCTCGGATC 58.250 50.000 0.00 0.00 0.00 3.36
75 76 0.911769 TGGTGGATTTGCTCGGATCT 59.088 50.000 0.00 0.00 0.00 2.75
76 77 1.134401 TGGTGGATTTGCTCGGATCTC 60.134 52.381 0.00 0.00 0.00 2.75
77 78 1.212616 GTGGATTTGCTCGGATCTCG 58.787 55.000 0.00 0.00 40.90 4.04
78 79 0.824109 TGGATTTGCTCGGATCTCGT 59.176 50.000 0.00 0.00 40.32 4.18
79 80 1.202417 TGGATTTGCTCGGATCTCGTC 60.202 52.381 0.00 0.00 40.32 4.20
80 81 1.124462 GATTTGCTCGGATCTCGTCG 58.876 55.000 0.00 0.00 40.32 5.12
81 82 0.456221 ATTTGCTCGGATCTCGTCGT 59.544 50.000 0.00 0.00 40.32 4.34
82 83 0.242825 TTTGCTCGGATCTCGTCGTT 59.757 50.000 0.00 0.00 40.32 3.85
83 84 0.456142 TTGCTCGGATCTCGTCGTTG 60.456 55.000 0.00 0.00 40.32 4.10
84 85 1.136984 GCTCGGATCTCGTCGTTGT 59.863 57.895 0.00 0.00 40.32 3.32
85 86 0.456312 GCTCGGATCTCGTCGTTGTT 60.456 55.000 0.00 0.00 40.32 2.83
86 87 1.536149 CTCGGATCTCGTCGTTGTTC 58.464 55.000 0.00 0.00 40.32 3.18
87 88 0.179207 TCGGATCTCGTCGTTGTTCG 60.179 55.000 0.00 0.00 40.32 3.95
88 89 0.453950 CGGATCTCGTCGTTGTTCGT 60.454 55.000 0.00 0.00 40.80 3.85
89 90 1.257539 GGATCTCGTCGTTGTTCGTC 58.742 55.000 0.00 0.00 40.80 4.20
90 91 1.135746 GGATCTCGTCGTTGTTCGTCT 60.136 52.381 0.00 0.00 40.80 4.18
91 92 2.094894 GGATCTCGTCGTTGTTCGTCTA 59.905 50.000 0.00 0.00 40.80 2.59
92 93 2.584166 TCTCGTCGTTGTTCGTCTAC 57.416 50.000 0.00 0.00 40.80 2.59
93 94 1.136529 TCTCGTCGTTGTTCGTCTACG 60.137 52.381 0.00 0.00 44.05 3.51
94 95 0.581529 TCGTCGTTGTTCGTCTACGT 59.418 50.000 2.02 0.00 43.41 3.57
95 96 1.003972 TCGTCGTTGTTCGTCTACGTT 60.004 47.619 0.00 0.00 43.41 3.99
96 97 1.376856 CGTCGTTGTTCGTCTACGTTC 59.623 52.381 0.00 0.00 43.41 3.95
97 98 1.376856 GTCGTTGTTCGTCTACGTTCG 59.623 52.381 0.00 0.00 43.41 3.95
98 99 1.003972 TCGTTGTTCGTCTACGTTCGT 60.004 47.619 0.00 2.91 43.41 3.85
99 100 1.119497 CGTTGTTCGTCTACGTTCGTG 59.881 52.381 8.14 0.00 39.58 4.35
100 101 2.111756 GTTGTTCGTCTACGTTCGTGT 58.888 47.619 8.14 0.00 40.80 4.49
101 102 1.745566 TGTTCGTCTACGTTCGTGTG 58.254 50.000 8.14 1.60 40.80 3.82
102 103 1.063912 TGTTCGTCTACGTTCGTGTGT 59.936 47.619 8.14 0.00 40.80 3.72
103 104 1.705559 GTTCGTCTACGTTCGTGTGTC 59.294 52.381 8.14 0.00 40.80 3.67
104 105 1.220529 TCGTCTACGTTCGTGTGTCT 58.779 50.000 8.14 0.00 40.80 3.41
105 106 1.599071 TCGTCTACGTTCGTGTGTCTT 59.401 47.619 8.14 0.00 40.80 3.01
106 107 1.967908 CGTCTACGTTCGTGTGTCTTC 59.032 52.381 8.14 0.00 34.11 2.87
107 108 1.967908 GTCTACGTTCGTGTGTCTTCG 59.032 52.381 8.14 0.00 0.00 3.79
108 109 1.069703 TCTACGTTCGTGTGTCTTCGG 60.070 52.381 8.14 0.00 0.00 4.30
109 110 0.662619 TACGTTCGTGTGTCTTCGGT 59.337 50.000 8.14 0.00 0.00 4.69
110 111 0.179129 ACGTTCGTGTGTCTTCGGTT 60.179 50.000 0.00 0.00 0.00 4.44
111 112 0.925466 CGTTCGTGTGTCTTCGGTTT 59.075 50.000 0.00 0.00 0.00 3.27
112 113 1.331680 CGTTCGTGTGTCTTCGGTTTG 60.332 52.381 0.00 0.00 0.00 2.93
113 114 1.004292 GTTCGTGTGTCTTCGGTTTGG 60.004 52.381 0.00 0.00 0.00 3.28
114 115 0.460722 TCGTGTGTCTTCGGTTTGGA 59.539 50.000 0.00 0.00 0.00 3.53
115 116 1.069513 TCGTGTGTCTTCGGTTTGGAT 59.930 47.619 0.00 0.00 0.00 3.41
116 117 1.459592 CGTGTGTCTTCGGTTTGGATC 59.540 52.381 0.00 0.00 0.00 3.36
117 118 1.804748 GTGTGTCTTCGGTTTGGATCC 59.195 52.381 4.20 4.20 0.00 3.36
118 119 1.697432 TGTGTCTTCGGTTTGGATCCT 59.303 47.619 14.23 0.00 0.00 3.24
119 120 2.105821 TGTGTCTTCGGTTTGGATCCTT 59.894 45.455 14.23 0.00 0.00 3.36
120 121 2.742589 GTGTCTTCGGTTTGGATCCTTC 59.257 50.000 14.23 3.17 0.00 3.46
121 122 2.290071 TGTCTTCGGTTTGGATCCTTCC 60.290 50.000 14.23 11.29 42.94 3.46
122 123 1.066430 TCTTCGGTTTGGATCCTTCCG 60.066 52.381 25.49 25.49 45.89 4.30
123 124 0.978151 TTCGGTTTGGATCCTTCCGA 59.022 50.000 28.02 28.02 45.89 4.55
124 125 1.200519 TCGGTTTGGATCCTTCCGAT 58.799 50.000 28.02 0.00 45.89 4.18
125 126 1.138266 TCGGTTTGGATCCTTCCGATC 59.862 52.381 28.02 9.18 45.89 3.69
126 127 1.139058 CGGTTTGGATCCTTCCGATCT 59.861 52.381 26.55 0.00 45.90 2.75
127 128 2.364324 CGGTTTGGATCCTTCCGATCTA 59.636 50.000 26.55 0.00 45.90 1.98
128 129 3.729966 GGTTTGGATCCTTCCGATCTAC 58.270 50.000 14.23 0.00 45.90 2.59
129 130 3.381949 GTTTGGATCCTTCCGATCTACG 58.618 50.000 14.23 0.00 45.90 3.51
130 131 2.359981 TGGATCCTTCCGATCTACGT 57.640 50.000 14.23 0.00 45.90 3.57
131 132 2.662866 TGGATCCTTCCGATCTACGTT 58.337 47.619 14.23 0.00 45.90 3.99
132 133 3.824133 TGGATCCTTCCGATCTACGTTA 58.176 45.455 14.23 0.00 45.90 3.18
133 134 4.404640 TGGATCCTTCCGATCTACGTTAT 58.595 43.478 14.23 0.00 45.90 1.89
134 135 4.831155 TGGATCCTTCCGATCTACGTTATT 59.169 41.667 14.23 0.00 45.90 1.40
135 136 5.303589 TGGATCCTTCCGATCTACGTTATTT 59.696 40.000 14.23 0.00 45.90 1.40
136 137 6.183360 TGGATCCTTCCGATCTACGTTATTTT 60.183 38.462 14.23 0.00 45.90 1.82
137 138 6.704937 GGATCCTTCCGATCTACGTTATTTTT 59.295 38.462 3.84 0.00 45.90 1.94
138 139 7.095732 GGATCCTTCCGATCTACGTTATTTTTC 60.096 40.741 3.84 0.00 45.90 2.29
139 140 6.632909 TCCTTCCGATCTACGTTATTTTTCA 58.367 36.000 0.00 0.00 40.78 2.69
140 141 7.270047 TCCTTCCGATCTACGTTATTTTTCAT 58.730 34.615 0.00 0.00 40.78 2.57
141 142 7.437267 TCCTTCCGATCTACGTTATTTTTCATC 59.563 37.037 0.00 0.00 40.78 2.92
142 143 6.742999 TCCGATCTACGTTATTTTTCATCG 57.257 37.500 0.00 0.00 40.78 3.84
143 144 5.901509 CCGATCTACGTTATTTTTCATCGG 58.098 41.667 0.00 2.86 43.93 4.18
144 145 5.363517 CGATCTACGTTATTTTTCATCGGC 58.636 41.667 0.00 0.00 37.22 5.54
145 146 4.765281 TCTACGTTATTTTTCATCGGCG 57.235 40.909 0.00 0.00 0.00 6.46
146 147 2.817538 ACGTTATTTTTCATCGGCGG 57.182 45.000 7.21 0.00 0.00 6.13
147 148 1.202098 ACGTTATTTTTCATCGGCGGC 60.202 47.619 7.21 0.00 0.00 6.53
148 149 1.462791 GTTATTTTTCATCGGCGGCG 58.537 50.000 27.15 27.15 0.00 6.46
149 150 0.378962 TTATTTTTCATCGGCGGCGG 59.621 50.000 31.73 16.54 0.00 6.13
150 151 0.745128 TATTTTTCATCGGCGGCGGT 60.745 50.000 31.73 23.77 0.00 5.68
151 152 1.591504 ATTTTTCATCGGCGGCGGTT 61.592 50.000 31.73 16.58 0.00 4.44
152 153 2.465097 TTTTTCATCGGCGGCGGTTG 62.465 55.000 31.73 26.46 0.00 3.77
161 162 3.726517 CGGCGGTTGCTGTTCTGG 61.727 66.667 0.00 0.00 42.79 3.86
162 163 3.365265 GGCGGTTGCTGTTCTGGG 61.365 66.667 0.00 0.00 42.25 4.45
163 164 3.365265 GCGGTTGCTGTTCTGGGG 61.365 66.667 0.00 0.00 38.39 4.96
164 165 2.113139 CGGTTGCTGTTCTGGGGT 59.887 61.111 0.00 0.00 0.00 4.95
165 166 2.260869 CGGTTGCTGTTCTGGGGTG 61.261 63.158 0.00 0.00 0.00 4.61
166 167 2.564721 GGTTGCTGTTCTGGGGTGC 61.565 63.158 0.00 0.00 0.00 5.01
167 168 1.529244 GTTGCTGTTCTGGGGTGCT 60.529 57.895 0.00 0.00 0.00 4.40
168 169 1.529010 TTGCTGTTCTGGGGTGCTG 60.529 57.895 0.00 0.00 0.00 4.41
169 170 2.674380 GCTGTTCTGGGGTGCTGG 60.674 66.667 0.00 0.00 0.00 4.85
170 171 2.839098 CTGTTCTGGGGTGCTGGT 59.161 61.111 0.00 0.00 0.00 4.00
171 172 1.302832 CTGTTCTGGGGTGCTGGTC 60.303 63.158 0.00 0.00 0.00 4.02
172 173 2.034221 GTTCTGGGGTGCTGGTCC 59.966 66.667 0.00 0.00 0.00 4.46
173 174 2.121963 TTCTGGGGTGCTGGTCCT 60.122 61.111 0.00 0.00 0.00 3.85
174 175 1.159905 TTCTGGGGTGCTGGTCCTA 59.840 57.895 0.00 0.00 0.00 2.94
175 176 0.253160 TTCTGGGGTGCTGGTCCTAT 60.253 55.000 0.00 0.00 0.00 2.57
176 177 0.982852 TCTGGGGTGCTGGTCCTATG 60.983 60.000 0.00 0.00 0.00 2.23
177 178 1.987807 CTGGGGTGCTGGTCCTATGG 61.988 65.000 0.00 0.00 0.00 2.74
178 179 2.757124 GGGGTGCTGGTCCTATGGG 61.757 68.421 0.00 0.00 0.00 4.00
179 180 2.757124 GGGTGCTGGTCCTATGGGG 61.757 68.421 0.00 0.00 0.00 4.96
180 181 2.193248 GTGCTGGTCCTATGGGGC 59.807 66.667 0.00 0.00 36.26 5.80
187 188 2.539983 GTCCTATGGGGCCTTAGCA 58.460 57.895 0.84 0.00 42.56 3.49
188 189 0.108774 GTCCTATGGGGCCTTAGCAC 59.891 60.000 0.84 0.00 43.97 4.40
189 190 1.071471 CCTATGGGGCCTTAGCACG 59.929 63.158 0.84 0.00 46.55 5.34
190 191 1.407656 CCTATGGGGCCTTAGCACGA 61.408 60.000 0.84 0.00 46.55 4.35
191 192 0.249911 CTATGGGGCCTTAGCACGAC 60.250 60.000 0.84 0.00 46.55 4.34
192 193 2.023414 TATGGGGCCTTAGCACGACG 62.023 60.000 0.84 0.00 46.55 5.12
193 194 3.766691 GGGGCCTTAGCACGACGA 61.767 66.667 0.84 0.00 46.55 4.20
194 195 2.508663 GGGCCTTAGCACGACGAC 60.509 66.667 0.84 0.00 42.56 4.34
195 196 2.572284 GGCCTTAGCACGACGACT 59.428 61.111 0.00 0.59 42.56 4.18
196 197 1.080025 GGCCTTAGCACGACGACTT 60.080 57.895 0.00 0.00 42.56 3.01
197 198 1.077089 GGCCTTAGCACGACGACTTC 61.077 60.000 0.00 0.00 42.56 3.01
198 199 1.077089 GCCTTAGCACGACGACTTCC 61.077 60.000 0.00 0.00 39.53 3.46
199 200 0.458025 CCTTAGCACGACGACTTCCC 60.458 60.000 0.00 0.00 0.00 3.97
200 201 0.797249 CTTAGCACGACGACTTCCCG 60.797 60.000 0.00 0.00 0.00 5.14
201 202 1.236616 TTAGCACGACGACTTCCCGA 61.237 55.000 0.00 0.00 0.00 5.14
202 203 1.915614 TAGCACGACGACTTCCCGAC 61.916 60.000 0.00 0.00 0.00 4.79
203 204 2.952245 CACGACGACTTCCCGACT 59.048 61.111 0.00 0.00 0.00 4.18
204 205 1.442184 CACGACGACTTCCCGACTG 60.442 63.158 0.00 0.00 0.00 3.51
205 206 1.895707 ACGACGACTTCCCGACTGT 60.896 57.895 0.00 0.00 0.00 3.55
206 207 1.154263 CGACGACTTCCCGACTGTC 60.154 63.158 0.00 0.00 0.00 3.51
207 208 1.575576 CGACGACTTCCCGACTGTCT 61.576 60.000 6.21 0.00 0.00 3.41
208 209 1.446907 GACGACTTCCCGACTGTCTA 58.553 55.000 6.21 0.00 0.00 2.59
209 210 1.130186 GACGACTTCCCGACTGTCTAC 59.870 57.143 6.21 0.00 0.00 2.59
210 211 1.271271 ACGACTTCCCGACTGTCTACT 60.271 52.381 6.21 0.00 0.00 2.57
211 212 2.027745 ACGACTTCCCGACTGTCTACTA 60.028 50.000 6.21 0.00 0.00 1.82
212 213 2.351111 CGACTTCCCGACTGTCTACTAC 59.649 54.545 6.21 0.00 0.00 2.73
213 214 3.341823 GACTTCCCGACTGTCTACTACA 58.658 50.000 6.21 0.00 36.42 2.74
214 215 3.755378 GACTTCCCGACTGTCTACTACAA 59.245 47.826 6.21 0.00 37.74 2.41
215 216 3.505293 ACTTCCCGACTGTCTACTACAAC 59.495 47.826 6.21 0.00 37.74 3.32
216 217 3.144657 TCCCGACTGTCTACTACAACA 57.855 47.619 6.21 0.00 37.74 3.33
217 218 3.489355 TCCCGACTGTCTACTACAACAA 58.511 45.455 6.21 0.00 37.74 2.83
218 219 3.504906 TCCCGACTGTCTACTACAACAAG 59.495 47.826 6.21 0.00 37.74 3.16
219 220 3.255149 CCCGACTGTCTACTACAACAAGT 59.745 47.826 6.21 0.00 37.74 3.16
220 221 4.261909 CCCGACTGTCTACTACAACAAGTT 60.262 45.833 6.21 0.00 37.74 2.66
221 222 4.680110 CCGACTGTCTACTACAACAAGTTG 59.320 45.833 11.16 11.16 45.58 3.16
229 230 2.027460 CAACAAGTTGTGCCCGGC 59.973 61.111 9.79 1.04 35.92 6.13
230 231 2.123897 AACAAGTTGTGCCCGGCT 60.124 55.556 9.79 0.00 0.00 5.52
231 232 2.193536 AACAAGTTGTGCCCGGCTC 61.194 57.895 9.79 7.85 0.00 4.70
232 233 3.365265 CAAGTTGTGCCCGGCTCC 61.365 66.667 11.61 1.66 0.00 4.70
233 234 3.884774 AAGTTGTGCCCGGCTCCA 61.885 61.111 11.61 4.56 0.00 3.86
234 235 3.850098 AAGTTGTGCCCGGCTCCAG 62.850 63.158 11.61 0.00 0.00 3.86
247 248 3.531207 TCCAGCGATGGAGGAGCG 61.531 66.667 20.59 0.00 36.22 5.03
248 249 3.531207 CCAGCGATGGAGGAGCGA 61.531 66.667 16.48 0.00 34.57 4.93
249 250 2.733301 CAGCGATGGAGGAGCGAT 59.267 61.111 0.00 0.00 34.57 4.58
250 251 1.664017 CAGCGATGGAGGAGCGATG 60.664 63.158 0.00 0.00 44.24 3.84
251 252 1.829970 AGCGATGGAGGAGCGATGA 60.830 57.895 0.00 0.00 34.57 2.92
252 253 1.663074 GCGATGGAGGAGCGATGAC 60.663 63.158 0.00 0.00 34.57 3.06
253 254 1.371022 CGATGGAGGAGCGATGACG 60.371 63.158 0.00 0.00 34.57 4.35
254 255 1.006805 GATGGAGGAGCGATGACGG 60.007 63.158 0.00 0.00 40.15 4.79
255 256 3.157217 ATGGAGGAGCGATGACGGC 62.157 63.158 0.00 0.00 40.15 5.68
256 257 4.933064 GGAGGAGCGATGACGGCG 62.933 72.222 4.80 4.80 40.15 6.46
257 258 4.933064 GAGGAGCGATGACGGCGG 62.933 72.222 13.24 0.00 40.15 6.13
278 279 3.804193 GCCTTCGGCTCGCTTTGG 61.804 66.667 0.00 0.00 46.69 3.28
279 280 2.358737 CCTTCGGCTCGCTTTGGT 60.359 61.111 0.00 0.00 0.00 3.67
280 281 2.680913 CCTTCGGCTCGCTTTGGTG 61.681 63.158 0.00 0.00 0.00 4.17
281 282 3.314388 CTTCGGCTCGCTTTGGTGC 62.314 63.158 0.00 0.00 0.00 5.01
282 283 3.825160 TTCGGCTCGCTTTGGTGCT 62.825 57.895 0.00 0.00 0.00 4.40
283 284 3.357079 CGGCTCGCTTTGGTGCTT 61.357 61.111 0.00 0.00 0.00 3.91
284 285 2.256461 GGCTCGCTTTGGTGCTTG 59.744 61.111 0.00 0.00 0.00 4.01
285 286 2.555547 GGCTCGCTTTGGTGCTTGT 61.556 57.895 0.00 0.00 0.00 3.16
286 287 1.234615 GGCTCGCTTTGGTGCTTGTA 61.235 55.000 0.00 0.00 0.00 2.41
287 288 0.166814 GCTCGCTTTGGTGCTTGTAG 59.833 55.000 0.00 0.00 0.00 2.74
288 289 0.166814 CTCGCTTTGGTGCTTGTAGC 59.833 55.000 0.00 0.00 42.82 3.58
289 290 1.210155 CGCTTTGGTGCTTGTAGCC 59.790 57.895 0.00 0.00 41.51 3.93
290 291 1.210155 GCTTTGGTGCTTGTAGCCG 59.790 57.895 0.00 0.00 41.51 5.52
291 292 1.515521 GCTTTGGTGCTTGTAGCCGT 61.516 55.000 0.00 0.00 41.51 5.68
292 293 0.517316 CTTTGGTGCTTGTAGCCGTC 59.483 55.000 0.00 0.00 41.51 4.79
293 294 1.225376 TTTGGTGCTTGTAGCCGTCG 61.225 55.000 0.00 0.00 41.51 5.12
294 295 3.488090 GGTGCTTGTAGCCGTCGC 61.488 66.667 0.00 0.00 41.51 5.19
296 297 1.153901 GTGCTTGTAGCCGTCGCTA 60.154 57.895 0.00 0.00 46.08 4.26
302 303 2.044650 TAGCCGTCGCTAGGTGGT 60.045 61.111 0.00 0.00 46.08 4.16
303 304 2.117156 TAGCCGTCGCTAGGTGGTC 61.117 63.158 0.00 0.00 46.08 4.02
304 305 2.547640 TAGCCGTCGCTAGGTGGTCT 62.548 60.000 0.00 0.00 46.08 3.85
305 306 2.117156 GCCGTCGCTAGGTGGTCTA 61.117 63.158 0.00 0.00 0.00 2.59
306 307 1.726265 CCGTCGCTAGGTGGTCTAC 59.274 63.158 0.00 0.00 0.00 2.59
307 308 1.351012 CGTCGCTAGGTGGTCTACG 59.649 63.158 0.00 0.00 0.00 3.51
308 309 1.086067 CGTCGCTAGGTGGTCTACGA 61.086 60.000 0.00 0.00 32.96 3.43
309 310 1.089920 GTCGCTAGGTGGTCTACGAA 58.910 55.000 0.00 0.00 35.22 3.85
310 311 1.674962 GTCGCTAGGTGGTCTACGAAT 59.325 52.381 0.00 0.00 35.22 3.34
311 312 2.098770 GTCGCTAGGTGGTCTACGAATT 59.901 50.000 0.00 0.00 35.22 2.17
312 313 2.756760 TCGCTAGGTGGTCTACGAATTT 59.243 45.455 0.00 0.00 32.69 1.82
313 314 3.947196 TCGCTAGGTGGTCTACGAATTTA 59.053 43.478 0.00 0.00 32.69 1.40
314 315 4.036027 TCGCTAGGTGGTCTACGAATTTAG 59.964 45.833 0.00 0.00 32.69 1.85
315 316 4.036027 CGCTAGGTGGTCTACGAATTTAGA 59.964 45.833 0.00 0.00 0.00 2.10
316 317 5.278364 CGCTAGGTGGTCTACGAATTTAGAT 60.278 44.000 0.00 0.00 30.73 1.98
317 318 5.921408 GCTAGGTGGTCTACGAATTTAGATG 59.079 44.000 0.00 0.00 30.73 2.90
318 319 5.934402 AGGTGGTCTACGAATTTAGATGT 57.066 39.130 0.00 0.00 30.73 3.06
319 320 7.255381 GCTAGGTGGTCTACGAATTTAGATGTA 60.255 40.741 0.00 0.00 30.73 2.29
320 321 7.414222 AGGTGGTCTACGAATTTAGATGTAA 57.586 36.000 0.00 0.00 30.73 2.41
321 322 8.019656 AGGTGGTCTACGAATTTAGATGTAAT 57.980 34.615 0.00 0.00 30.73 1.89
322 323 8.483758 AGGTGGTCTACGAATTTAGATGTAATT 58.516 33.333 0.00 0.00 30.73 1.40
323 324 9.106070 GGTGGTCTACGAATTTAGATGTAATTT 57.894 33.333 0.00 0.00 30.73 1.82
348 349 5.796350 ATTTCTGGTATTCGTTGTACTGC 57.204 39.130 0.00 0.00 0.00 4.40
349 350 3.241067 TCTGGTATTCGTTGTACTGCC 57.759 47.619 0.00 0.00 0.00 4.85
350 351 2.563620 TCTGGTATTCGTTGTACTGCCA 59.436 45.455 0.00 0.00 0.00 4.92
351 352 3.196901 TCTGGTATTCGTTGTACTGCCAT 59.803 43.478 0.00 0.00 0.00 4.40
352 353 3.266636 TGGTATTCGTTGTACTGCCATG 58.733 45.455 0.00 0.00 0.00 3.66
353 354 3.055747 TGGTATTCGTTGTACTGCCATGA 60.056 43.478 0.00 0.00 0.00 3.07
354 355 4.127171 GGTATTCGTTGTACTGCCATGAT 58.873 43.478 0.00 0.00 0.00 2.45
355 356 4.574828 GGTATTCGTTGTACTGCCATGATT 59.425 41.667 0.00 0.00 0.00 2.57
356 357 4.621068 ATTCGTTGTACTGCCATGATTG 57.379 40.909 0.00 0.00 0.00 2.67
357 358 3.326836 TCGTTGTACTGCCATGATTGA 57.673 42.857 0.00 0.00 0.00 2.57
358 359 3.669536 TCGTTGTACTGCCATGATTGAA 58.330 40.909 0.00 0.00 0.00 2.69
359 360 4.068599 TCGTTGTACTGCCATGATTGAAA 58.931 39.130 0.00 0.00 0.00 2.69
360 361 4.517075 TCGTTGTACTGCCATGATTGAAAA 59.483 37.500 0.00 0.00 0.00 2.29
361 362 5.182950 TCGTTGTACTGCCATGATTGAAAAT 59.817 36.000 0.00 0.00 0.00 1.82
362 363 5.286797 CGTTGTACTGCCATGATTGAAAATG 59.713 40.000 0.00 0.00 0.00 2.32
363 364 6.389091 GTTGTACTGCCATGATTGAAAATGA 58.611 36.000 0.00 0.00 0.00 2.57
364 365 6.587206 TGTACTGCCATGATTGAAAATGAA 57.413 33.333 0.00 0.00 0.00 2.57
365 366 7.172868 TGTACTGCCATGATTGAAAATGAAT 57.827 32.000 0.00 0.00 0.00 2.57
366 367 8.291191 TGTACTGCCATGATTGAAAATGAATA 57.709 30.769 0.00 0.00 0.00 1.75
367 368 8.407832 TGTACTGCCATGATTGAAAATGAATAG 58.592 33.333 0.00 0.00 0.00 1.73
368 369 7.649533 ACTGCCATGATTGAAAATGAATAGA 57.350 32.000 0.00 0.00 0.00 1.98
369 370 8.246430 ACTGCCATGATTGAAAATGAATAGAT 57.754 30.769 0.00 0.00 0.00 1.98
370 371 8.701895 ACTGCCATGATTGAAAATGAATAGATT 58.298 29.630 0.00 0.00 0.00 2.40
371 372 8.880878 TGCCATGATTGAAAATGAATAGATTG 57.119 30.769 0.00 0.00 0.00 2.67
372 373 8.697292 TGCCATGATTGAAAATGAATAGATTGA 58.303 29.630 0.00 0.00 0.00 2.57
373 374 9.537192 GCCATGATTGAAAATGAATAGATTGAA 57.463 29.630 0.00 0.00 0.00 2.69
384 385 8.986477 AATGAATAGATTGAAAGTTTTTCCGG 57.014 30.769 0.00 0.00 0.00 5.14
385 386 6.386654 TGAATAGATTGAAAGTTTTTCCGGC 58.613 36.000 0.00 0.00 0.00 6.13
386 387 5.975693 ATAGATTGAAAGTTTTTCCGGCA 57.024 34.783 0.00 0.00 0.00 5.69
387 388 4.664150 AGATTGAAAGTTTTTCCGGCAA 57.336 36.364 0.00 0.00 0.00 4.52
388 389 5.017294 AGATTGAAAGTTTTTCCGGCAAA 57.983 34.783 0.00 0.00 0.00 3.68
389 390 5.423886 AGATTGAAAGTTTTTCCGGCAAAA 58.576 33.333 7.98 7.98 31.73 2.44
409 410 2.821991 AAGTGACCTCTCGTTGAAGG 57.178 50.000 0.00 0.00 0.00 3.46
452 453 1.837439 AGCATATCGAACACCCCAGAA 59.163 47.619 0.00 0.00 0.00 3.02
453 454 2.439507 AGCATATCGAACACCCCAGAAT 59.560 45.455 0.00 0.00 0.00 2.40
454 455 2.808543 GCATATCGAACACCCCAGAATC 59.191 50.000 0.00 0.00 0.00 2.52
455 456 3.403038 CATATCGAACACCCCAGAATCC 58.597 50.000 0.00 0.00 0.00 3.01
456 457 0.546598 ATCGAACACCCCAGAATCCC 59.453 55.000 0.00 0.00 0.00 3.85
457 458 0.838554 TCGAACACCCCAGAATCCCA 60.839 55.000 0.00 0.00 0.00 4.37
458 459 0.392998 CGAACACCCCAGAATCCCAG 60.393 60.000 0.00 0.00 0.00 4.45
459 460 0.991920 GAACACCCCAGAATCCCAGA 59.008 55.000 0.00 0.00 0.00 3.86
543 550 5.341872 TCACGAGAATTTAATTCCGGGTA 57.658 39.130 21.01 11.43 40.13 3.69
545 552 4.026310 CACGAGAATTTAATTCCGGGTACG 60.026 45.833 22.32 16.36 40.13 3.67
577 584 0.999712 AAAAGGACATCCCCATCGGT 59.000 50.000 0.00 0.00 36.42 4.69
588 595 2.108168 CCCCATCGGTTCTTCAGTCTA 58.892 52.381 0.00 0.00 0.00 2.59
589 596 2.159085 CCCCATCGGTTCTTCAGTCTAC 60.159 54.545 0.00 0.00 0.00 2.59
673 680 6.325919 TCAATAAATGCGTTTTGTCCTCTT 57.674 33.333 9.61 0.00 0.00 2.85
741 753 8.641498 ACAAATGGACTCTGTAGAAATTTCAT 57.359 30.769 19.99 7.95 0.00 2.57
742 754 9.739276 ACAAATGGACTCTGTAGAAATTTCATA 57.261 29.630 19.99 7.04 0.00 2.15
885 914 0.739561 CCGCCTGTAGAGTCTGGTAC 59.260 60.000 1.86 0.00 0.00 3.34
892 921 5.747342 CCTGTAGAGTCTGGTACTACTTCT 58.253 45.833 1.86 0.00 39.07 2.85
986 1016 3.385384 CAGAGCGGGGTCAGAGCA 61.385 66.667 1.20 0.00 0.00 4.26
987 1017 3.073735 AGAGCGGGGTCAGAGCAG 61.074 66.667 1.20 0.00 0.00 4.24
993 1023 1.544825 CGGGGTCAGAGCAGGAGAAA 61.545 60.000 1.20 0.00 0.00 2.52
1071 1103 2.466982 CGCCGAGGAGTACTACGCA 61.467 63.158 9.68 0.00 0.00 5.24
1227 1259 1.451567 CAGCTGGATGGTGCTCCTG 60.452 63.158 5.57 0.00 37.44 3.86
1251 1283 2.250939 CGTCCACTTCGCCAAGCAA 61.251 57.895 0.00 0.00 32.09 3.91
1461 1493 4.760047 CACCTCCGGGACAAGCCG 62.760 72.222 0.00 0.00 37.63 5.52
2041 2092 1.135373 TGCGTCTTGTTCGGAGAGATC 60.135 52.381 0.00 0.00 38.43 2.75
2046 2097 2.288186 TCTTGTTCGGAGAGATCGATCG 59.712 50.000 19.33 9.36 38.43 3.69
2048 2099 2.495084 TGTTCGGAGAGATCGATCGAT 58.505 47.619 29.76 29.76 38.43 3.59
2145 2210 2.844122 ACGGGCGCAATAAAAGAATC 57.156 45.000 10.83 0.00 0.00 2.52
2176 2251 6.864685 ACTTTACGTACGTCTTGATGAAATGA 59.135 34.615 26.53 0.00 0.00 2.57
2189 2264 3.272574 TGAAATGAGATCTGGTCCTGC 57.727 47.619 0.00 0.00 0.00 4.85
2193 2268 0.900421 TGAGATCTGGTCCTGCTGTG 59.100 55.000 0.00 0.00 0.00 3.66
2195 2270 0.546267 AGATCTGGTCCTGCTGTGGT 60.546 55.000 0.00 0.00 0.00 4.16
2196 2271 0.392193 GATCTGGTCCTGCTGTGGTG 60.392 60.000 0.00 0.00 0.00 4.17
2197 2272 1.130054 ATCTGGTCCTGCTGTGGTGT 61.130 55.000 0.00 0.00 0.00 4.16
2198 2273 1.149174 CTGGTCCTGCTGTGGTGTT 59.851 57.895 0.00 0.00 0.00 3.32
2199 2274 1.152984 TGGTCCTGCTGTGGTGTTG 60.153 57.895 0.00 0.00 0.00 3.33
2200 2275 1.152963 GGTCCTGCTGTGGTGTTGT 60.153 57.895 0.00 0.00 0.00 3.32
2201 2276 1.447317 GGTCCTGCTGTGGTGTTGTG 61.447 60.000 0.00 0.00 0.00 3.33
2202 2277 0.748005 GTCCTGCTGTGGTGTTGTGT 60.748 55.000 0.00 0.00 0.00 3.72
2203 2278 0.833949 TCCTGCTGTGGTGTTGTGTA 59.166 50.000 0.00 0.00 0.00 2.90
2204 2279 0.944386 CCTGCTGTGGTGTTGTGTAC 59.056 55.000 0.00 0.00 0.00 2.90
2222 2297 5.353400 TGTGTACTGTAGGAGTATCTTCGTG 59.647 44.000 0.00 0.00 39.44 4.35
2223 2298 5.353678 GTGTACTGTAGGAGTATCTTCGTGT 59.646 44.000 0.00 0.00 39.44 4.49
2224 2299 6.536582 GTGTACTGTAGGAGTATCTTCGTGTA 59.463 42.308 0.00 0.00 39.44 2.90
2264 2349 5.032863 GCTTCTCATCAATGAAAATGTCGG 58.967 41.667 0.00 0.00 36.18 4.79
2277 2362 1.040893 ATGTCGGCGTGGTCTCCATA 61.041 55.000 6.85 0.00 35.28 2.74
2347 2457 6.098679 TGATTTAATTTCCAGCACAAATCCG 58.901 36.000 0.00 0.00 33.49 4.18
2361 2471 3.181465 ACAAATCCGTCACTGTTCTGAGT 60.181 43.478 0.00 0.00 0.00 3.41
2425 2536 5.107133 GCAACAATCCAATCTCCAATTCTG 58.893 41.667 0.00 0.00 0.00 3.02
2432 2545 3.693085 CCAATCTCCAATTCTGTGTCAGG 59.307 47.826 0.00 0.00 31.51 3.86
2451 2564 5.852738 CAGGACAACTGTAGAAGAATGTG 57.147 43.478 0.00 0.00 42.42 3.21
2452 2565 5.300752 CAGGACAACTGTAGAAGAATGTGT 58.699 41.667 0.00 0.00 42.42 3.72
2453 2566 5.406780 CAGGACAACTGTAGAAGAATGTGTC 59.593 44.000 0.00 0.00 42.42 3.67
2454 2567 5.070446 AGGACAACTGTAGAAGAATGTGTCA 59.930 40.000 0.00 0.00 32.25 3.58
2455 2568 5.406780 GGACAACTGTAGAAGAATGTGTCAG 59.593 44.000 0.00 0.00 32.25 3.51
2456 2569 5.300752 ACAACTGTAGAAGAATGTGTCAGG 58.699 41.667 0.00 0.00 31.35 3.86
2479 2592 4.745649 ACAACTGTAGAAGAATAGCGGAC 58.254 43.478 0.00 0.00 0.00 4.79
2488 2601 2.320781 AGAATAGCGGACTACCAGCAT 58.679 47.619 0.00 0.00 37.85 3.79
2499 2612 1.072331 CTACCAGCATATGTCCCACCC 59.928 57.143 4.29 0.00 0.00 4.61
2518 2634 7.834181 TCCCACCCATTAAAATTTTGACAAAAA 59.166 29.630 16.85 1.17 39.53 1.94
2522 2638 9.467796 ACCCATTAAAATTTTGACAAAAAGGAA 57.532 25.926 16.85 9.49 38.62 3.36
2532 2648 7.969536 TTTGACAAAAAGGAAACACATTTGA 57.030 28.000 0.00 0.00 35.06 2.69
2533 2649 6.959671 TGACAAAAAGGAAACACATTTGAC 57.040 33.333 3.81 0.00 35.06 3.18
2539 2655 4.045636 AGGAAACACATTTGACTGTTGC 57.954 40.909 0.00 0.00 30.88 4.17
2546 2662 6.109320 ACACATTTGACTGTTGCATTTTTG 57.891 33.333 0.00 0.00 0.00 2.44
2547 2663 5.064962 ACACATTTGACTGTTGCATTTTTGG 59.935 36.000 0.00 0.00 0.00 3.28
2561 2677 6.829703 TGCATTTTTGGCAAAAATATTCTCG 58.170 32.000 36.81 27.43 46.34 4.04
2631 2747 1.376466 CGCAGGGAATGGATAGGGG 59.624 63.158 0.00 0.00 0.00 4.79
2632 2748 1.127567 CGCAGGGAATGGATAGGGGA 61.128 60.000 0.00 0.00 0.00 4.81
2633 2749 1.376649 GCAGGGAATGGATAGGGGAT 58.623 55.000 0.00 0.00 0.00 3.85
2634 2750 2.562296 GCAGGGAATGGATAGGGGATA 58.438 52.381 0.00 0.00 0.00 2.59
2635 2751 2.507471 GCAGGGAATGGATAGGGGATAG 59.493 54.545 0.00 0.00 0.00 2.08
2636 2752 3.118531 CAGGGAATGGATAGGGGATAGG 58.881 54.545 0.00 0.00 0.00 2.57
2637 2753 2.047865 AGGGAATGGATAGGGGATAGGG 59.952 54.545 0.00 0.00 0.00 3.53
2638 2754 2.047296 GGGAATGGATAGGGGATAGGGA 59.953 54.545 0.00 0.00 0.00 4.20
2639 2755 3.507928 GGGAATGGATAGGGGATAGGGAA 60.508 52.174 0.00 0.00 0.00 3.97
2640 2756 4.183916 GGAATGGATAGGGGATAGGGAAA 58.816 47.826 0.00 0.00 0.00 3.13
2641 2757 4.228438 GGAATGGATAGGGGATAGGGAAAG 59.772 50.000 0.00 0.00 0.00 2.62
2642 2758 4.526991 ATGGATAGGGGATAGGGAAAGT 57.473 45.455 0.00 0.00 0.00 2.66
2643 2759 3.598264 TGGATAGGGGATAGGGAAAGTG 58.402 50.000 0.00 0.00 0.00 3.16
2644 2760 3.050564 TGGATAGGGGATAGGGAAAGTGT 60.051 47.826 0.00 0.00 0.00 3.55
2645 2761 3.328050 GGATAGGGGATAGGGAAAGTGTG 59.672 52.174 0.00 0.00 0.00 3.82
2646 2762 1.596496 AGGGGATAGGGAAAGTGTGG 58.404 55.000 0.00 0.00 0.00 4.17
2647 2763 0.106669 GGGGATAGGGAAAGTGTGGC 60.107 60.000 0.00 0.00 0.00 5.01
2648 2764 0.106669 GGGATAGGGAAAGTGTGGCC 60.107 60.000 0.00 0.00 0.00 5.36
2649 2765 0.463833 GGATAGGGAAAGTGTGGCCG 60.464 60.000 0.00 0.00 0.00 6.13
2650 2766 0.463833 GATAGGGAAAGTGTGGCCGG 60.464 60.000 0.00 0.00 0.00 6.13
2651 2767 1.921869 ATAGGGAAAGTGTGGCCGGG 61.922 60.000 2.18 0.00 0.00 5.73
2652 2768 3.961414 GGGAAAGTGTGGCCGGGA 61.961 66.667 2.18 0.00 0.00 5.14
2653 2769 2.359975 GGAAAGTGTGGCCGGGAG 60.360 66.667 2.18 0.00 0.00 4.30
2654 2770 2.430367 GAAAGTGTGGCCGGGAGT 59.570 61.111 2.18 0.00 0.00 3.85
2655 2771 1.966451 GAAAGTGTGGCCGGGAGTG 60.966 63.158 2.18 0.00 0.00 3.51
2656 2772 2.676163 GAAAGTGTGGCCGGGAGTGT 62.676 60.000 2.18 0.00 0.00 3.55
2657 2773 2.958578 AAAGTGTGGCCGGGAGTGTG 62.959 60.000 2.18 0.00 0.00 3.82
2660 2776 4.699522 GTGGCCGGGAGTGTGGTC 62.700 72.222 2.18 0.00 0.00 4.02
2662 2778 3.948719 GGCCGGGAGTGTGGTCAA 61.949 66.667 2.18 0.00 0.00 3.18
2663 2779 2.358737 GCCGGGAGTGTGGTCAAG 60.359 66.667 2.18 0.00 0.00 3.02
2664 2780 2.879233 GCCGGGAGTGTGGTCAAGA 61.879 63.158 2.18 0.00 0.00 3.02
2665 2781 1.752198 CCGGGAGTGTGGTCAAGAA 59.248 57.895 0.00 0.00 0.00 2.52
2666 2782 0.602905 CCGGGAGTGTGGTCAAGAAC 60.603 60.000 0.00 0.00 0.00 3.01
2667 2783 0.105964 CGGGAGTGTGGTCAAGAACA 59.894 55.000 0.00 0.00 0.00 3.18
2668 2784 1.474320 CGGGAGTGTGGTCAAGAACAA 60.474 52.381 0.00 0.00 0.00 2.83
2669 2785 2.222027 GGGAGTGTGGTCAAGAACAAG 58.778 52.381 0.00 0.00 0.00 3.16
2670 2786 1.604278 GGAGTGTGGTCAAGAACAAGC 59.396 52.381 0.00 0.00 0.00 4.01
2671 2787 2.288666 GAGTGTGGTCAAGAACAAGCA 58.711 47.619 0.00 0.00 0.00 3.91
2672 2788 2.880890 GAGTGTGGTCAAGAACAAGCAT 59.119 45.455 0.00 0.00 0.00 3.79
2673 2789 3.290710 AGTGTGGTCAAGAACAAGCATT 58.709 40.909 0.00 0.00 0.00 3.56
2674 2790 3.701040 AGTGTGGTCAAGAACAAGCATTT 59.299 39.130 0.00 0.00 0.00 2.32
2675 2791 4.887071 AGTGTGGTCAAGAACAAGCATTTA 59.113 37.500 0.00 0.00 0.00 1.40
2676 2792 4.976116 GTGTGGTCAAGAACAAGCATTTAC 59.024 41.667 0.00 0.00 0.00 2.01
2677 2793 4.219033 GTGGTCAAGAACAAGCATTTACG 58.781 43.478 0.00 0.00 0.00 3.18
2678 2794 4.024387 GTGGTCAAGAACAAGCATTTACGA 60.024 41.667 0.00 0.00 0.00 3.43
2679 2795 4.576873 TGGTCAAGAACAAGCATTTACGAA 59.423 37.500 0.00 0.00 0.00 3.85
2680 2796 5.066634 TGGTCAAGAACAAGCATTTACGAAA 59.933 36.000 0.00 0.00 0.00 3.46
2681 2797 5.974751 GGTCAAGAACAAGCATTTACGAAAA 59.025 36.000 0.00 0.00 0.00 2.29
2682 2798 6.142320 GGTCAAGAACAAGCATTTACGAAAAG 59.858 38.462 0.00 0.00 0.00 2.27
2683 2799 6.691388 GTCAAGAACAAGCATTTACGAAAAGT 59.309 34.615 0.00 0.00 0.00 2.66
2684 2800 7.220108 GTCAAGAACAAGCATTTACGAAAAGTT 59.780 33.333 0.00 0.00 0.00 2.66
2685 2801 8.399425 TCAAGAACAAGCATTTACGAAAAGTTA 58.601 29.630 0.00 0.00 0.00 2.24
2686 2802 9.015577 CAAGAACAAGCATTTACGAAAAGTTAA 57.984 29.630 0.00 0.00 0.00 2.01
2687 2803 8.782533 AGAACAAGCATTTACGAAAAGTTAAG 57.217 30.769 0.00 0.00 0.00 1.85
2688 2804 8.617809 AGAACAAGCATTTACGAAAAGTTAAGA 58.382 29.630 0.00 0.00 0.00 2.10
2689 2805 9.394477 GAACAAGCATTTACGAAAAGTTAAGAT 57.606 29.630 0.00 0.00 0.00 2.40
2690 2806 8.950403 ACAAGCATTTACGAAAAGTTAAGATC 57.050 30.769 0.00 0.00 0.00 2.75
2691 2807 8.564574 ACAAGCATTTACGAAAAGTTAAGATCA 58.435 29.630 0.00 0.00 0.00 2.92
2692 2808 9.559958 CAAGCATTTACGAAAAGTTAAGATCAT 57.440 29.630 0.00 0.00 0.00 2.45
2693 2809 9.559958 AAGCATTTACGAAAAGTTAAGATCATG 57.440 29.630 0.00 0.00 0.00 3.07
2694 2810 8.730680 AGCATTTACGAAAAGTTAAGATCATGT 58.269 29.630 0.00 0.00 0.00 3.21
2695 2811 9.982291 GCATTTACGAAAAGTTAAGATCATGTA 57.018 29.630 0.00 0.00 0.00 2.29
2781 2897 9.715121 ATTTTATACTGAGAAAACCTACGTGAA 57.285 29.630 0.00 0.00 28.97 3.18
2782 2898 9.545105 TTTTATACTGAGAAAACCTACGTGAAA 57.455 29.630 0.00 0.00 0.00 2.69
2783 2899 9.715121 TTTATACTGAGAAAACCTACGTGAAAT 57.285 29.630 0.00 0.00 0.00 2.17
2786 2902 9.715121 ATACTGAGAAAACCTACGTGAAATAAA 57.285 29.630 0.00 0.00 0.00 1.40
2787 2903 8.441312 ACTGAGAAAACCTACGTGAAATAAAA 57.559 30.769 0.00 0.00 0.00 1.52
2788 2904 8.557029 ACTGAGAAAACCTACGTGAAATAAAAG 58.443 33.333 0.00 0.00 0.00 2.27
2789 2905 8.665643 TGAGAAAACCTACGTGAAATAAAAGA 57.334 30.769 0.00 0.00 0.00 2.52
2790 2906 9.111613 TGAGAAAACCTACGTGAAATAAAAGAA 57.888 29.630 0.00 0.00 0.00 2.52
2791 2907 9.940166 GAGAAAACCTACGTGAAATAAAAGAAA 57.060 29.630 0.00 0.00 0.00 2.52
2887 3003 7.989416 AAAGAAAACCGGAGTATAATGAACA 57.011 32.000 9.46 0.00 0.00 3.18
2888 3004 7.989416 AAGAAAACCGGAGTATAATGAACAA 57.011 32.000 9.46 0.00 0.00 2.83
2889 3005 7.989416 AGAAAACCGGAGTATAATGAACAAA 57.011 32.000 9.46 0.00 0.00 2.83
2890 3006 7.813645 AGAAAACCGGAGTATAATGAACAAAC 58.186 34.615 9.46 0.00 0.00 2.93
2891 3007 7.664318 AGAAAACCGGAGTATAATGAACAAACT 59.336 33.333 9.46 0.00 0.00 2.66
2892 3008 6.737254 AACCGGAGTATAATGAACAAACTG 57.263 37.500 9.46 0.00 0.00 3.16
2893 3009 6.045072 ACCGGAGTATAATGAACAAACTGA 57.955 37.500 9.46 0.00 0.00 3.41
2894 3010 6.650120 ACCGGAGTATAATGAACAAACTGAT 58.350 36.000 9.46 0.00 0.00 2.90
2895 3011 6.538742 ACCGGAGTATAATGAACAAACTGATG 59.461 38.462 9.46 0.00 0.00 3.07
2896 3012 6.761242 CCGGAGTATAATGAACAAACTGATGA 59.239 38.462 0.00 0.00 0.00 2.92
2897 3013 7.279981 CCGGAGTATAATGAACAAACTGATGAA 59.720 37.037 0.00 0.00 0.00 2.57
2898 3014 8.664798 CGGAGTATAATGAACAAACTGATGAAA 58.335 33.333 0.00 0.00 0.00 2.69
2952 3068 9.810545 AAAAGAATAAACAAAGAAAACCGATGA 57.189 25.926 0.00 0.00 0.00 2.92
2953 3069 9.810545 AAAGAATAAACAAAGAAAACCGATGAA 57.189 25.926 0.00 0.00 0.00 2.57
2954 3070 9.463443 AAGAATAAACAAAGAAAACCGATGAAG 57.537 29.630 0.00 0.00 0.00 3.02
2955 3071 8.846211 AGAATAAACAAAGAAAACCGATGAAGA 58.154 29.630 0.00 0.00 0.00 2.87
2956 3072 9.118236 GAATAAACAAAGAAAACCGATGAAGAG 57.882 33.333 0.00 0.00 0.00 2.85
2957 3073 6.693315 AAACAAAGAAAACCGATGAAGAGA 57.307 33.333 0.00 0.00 0.00 3.10
2958 3074 6.884280 AACAAAGAAAACCGATGAAGAGAT 57.116 33.333 0.00 0.00 0.00 2.75
2959 3075 7.979444 AACAAAGAAAACCGATGAAGAGATA 57.021 32.000 0.00 0.00 0.00 1.98
2960 3076 7.979444 ACAAAGAAAACCGATGAAGAGATAA 57.021 32.000 0.00 0.00 0.00 1.75
2961 3077 8.391075 ACAAAGAAAACCGATGAAGAGATAAA 57.609 30.769 0.00 0.00 0.00 1.40
2962 3078 9.014297 ACAAAGAAAACCGATGAAGAGATAAAT 57.986 29.630 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.421410 CCACCAACGATGCTAGACGC 61.421 60.000 0.00 0.00 39.77 5.19
3 4 0.806102 CCCACCAACGATGCTAGACG 60.806 60.000 0.00 0.00 0.00 4.18
4 5 1.090052 GCCCACCAACGATGCTAGAC 61.090 60.000 0.00 0.00 0.00 2.59
6 7 2.173669 CGCCCACCAACGATGCTAG 61.174 63.158 0.00 0.00 0.00 3.42
7 8 2.125310 CGCCCACCAACGATGCTA 60.125 61.111 0.00 0.00 0.00 3.49
8 9 4.329545 ACGCCCACCAACGATGCT 62.330 61.111 0.00 0.00 0.00 3.79
9 10 4.101790 CACGCCCACCAACGATGC 62.102 66.667 0.00 0.00 0.00 3.91
10 11 2.668212 ACACGCCCACCAACGATG 60.668 61.111 0.00 0.00 0.00 3.84
11 12 2.668212 CACACGCCCACCAACGAT 60.668 61.111 0.00 0.00 0.00 3.73
12 13 4.920112 CCACACGCCCACCAACGA 62.920 66.667 0.00 0.00 0.00 3.85
13 14 4.920112 TCCACACGCCCACCAACG 62.920 66.667 0.00 0.00 0.00 4.10
14 15 2.282180 ATCCACACGCCCACCAAC 60.282 61.111 0.00 0.00 0.00 3.77
15 16 2.282110 CATCCACACGCCCACCAA 60.282 61.111 0.00 0.00 0.00 3.67
16 17 3.565214 ACATCCACACGCCCACCA 61.565 61.111 0.00 0.00 0.00 4.17
17 18 3.055719 CACATCCACACGCCCACC 61.056 66.667 0.00 0.00 0.00 4.61
18 19 2.281484 ACACATCCACACGCCCAC 60.281 61.111 0.00 0.00 0.00 4.61
19 20 2.281414 CACACATCCACACGCCCA 60.281 61.111 0.00 0.00 0.00 5.36
20 21 2.281484 ACACACATCCACACGCCC 60.281 61.111 0.00 0.00 0.00 6.13
21 22 1.291877 GAGACACACATCCACACGCC 61.292 60.000 0.00 0.00 0.00 5.68
22 23 0.319900 AGAGACACACATCCACACGC 60.320 55.000 0.00 0.00 0.00 5.34
23 24 1.422388 CAGAGACACACATCCACACG 58.578 55.000 0.00 0.00 0.00 4.49
24 25 1.800805 CCAGAGACACACATCCACAC 58.199 55.000 0.00 0.00 0.00 3.82
25 26 0.035317 GCCAGAGACACACATCCACA 59.965 55.000 0.00 0.00 0.00 4.17
26 27 0.035317 TGCCAGAGACACACATCCAC 59.965 55.000 0.00 0.00 0.00 4.02
27 28 0.322648 CTGCCAGAGACACACATCCA 59.677 55.000 0.00 0.00 0.00 3.41
28 29 0.610174 TCTGCCAGAGACACACATCC 59.390 55.000 0.00 0.00 0.00 3.51
29 30 2.168106 AGATCTGCCAGAGACACACATC 59.832 50.000 0.00 0.00 31.75 3.06
30 31 2.186243 AGATCTGCCAGAGACACACAT 58.814 47.619 0.00 0.00 31.75 3.21
31 32 1.637338 AGATCTGCCAGAGACACACA 58.363 50.000 0.00 0.00 31.75 3.72
32 33 3.636300 AGATAGATCTGCCAGAGACACAC 59.364 47.826 5.18 0.00 35.42 3.82
33 34 3.908476 AGATAGATCTGCCAGAGACACA 58.092 45.455 5.18 0.00 35.42 3.72
34 35 4.935352 AAGATAGATCTGCCAGAGACAC 57.065 45.455 5.18 0.00 37.19 3.67
35 36 4.100653 CCAAAGATAGATCTGCCAGAGACA 59.899 45.833 5.18 0.00 37.19 3.41
36 37 4.100808 ACCAAAGATAGATCTGCCAGAGAC 59.899 45.833 5.18 0.00 37.19 3.36
37 38 4.100653 CACCAAAGATAGATCTGCCAGAGA 59.899 45.833 5.18 0.00 37.19 3.10
38 39 4.378774 CACCAAAGATAGATCTGCCAGAG 58.621 47.826 5.18 0.00 37.19 3.35
39 40 3.135348 CCACCAAAGATAGATCTGCCAGA 59.865 47.826 5.18 0.00 37.19 3.86
40 41 3.135348 TCCACCAAAGATAGATCTGCCAG 59.865 47.826 5.18 0.00 37.19 4.85
41 42 3.114606 TCCACCAAAGATAGATCTGCCA 58.885 45.455 5.18 0.00 37.19 4.92
42 43 3.845781 TCCACCAAAGATAGATCTGCC 57.154 47.619 5.18 0.00 37.19 4.85
43 44 5.506982 GCAAATCCACCAAAGATAGATCTGC 60.507 44.000 5.18 0.00 37.19 4.26
44 45 5.826737 AGCAAATCCACCAAAGATAGATCTG 59.173 40.000 5.18 0.00 37.19 2.90
45 46 6.011122 AGCAAATCCACCAAAGATAGATCT 57.989 37.500 0.00 0.00 39.22 2.75
46 47 5.049818 CGAGCAAATCCACCAAAGATAGATC 60.050 44.000 0.00 0.00 0.00 2.75
47 48 4.818546 CGAGCAAATCCACCAAAGATAGAT 59.181 41.667 0.00 0.00 0.00 1.98
48 49 4.191544 CGAGCAAATCCACCAAAGATAGA 58.808 43.478 0.00 0.00 0.00 1.98
49 50 3.313526 CCGAGCAAATCCACCAAAGATAG 59.686 47.826 0.00 0.00 0.00 2.08
50 51 3.054728 TCCGAGCAAATCCACCAAAGATA 60.055 43.478 0.00 0.00 0.00 1.98
51 52 2.094675 CCGAGCAAATCCACCAAAGAT 58.905 47.619 0.00 0.00 0.00 2.40
52 53 1.073125 TCCGAGCAAATCCACCAAAGA 59.927 47.619 0.00 0.00 0.00 2.52
53 54 1.533625 TCCGAGCAAATCCACCAAAG 58.466 50.000 0.00 0.00 0.00 2.77
54 55 2.091541 GATCCGAGCAAATCCACCAAA 58.908 47.619 0.00 0.00 0.00 3.28
55 56 1.281867 AGATCCGAGCAAATCCACCAA 59.718 47.619 0.00 0.00 0.00 3.67
56 57 0.911769 AGATCCGAGCAAATCCACCA 59.088 50.000 0.00 0.00 0.00 4.17
57 58 1.587547 GAGATCCGAGCAAATCCACC 58.412 55.000 0.00 0.00 0.00 4.61
58 59 1.212616 CGAGATCCGAGCAAATCCAC 58.787 55.000 0.00 0.00 41.76 4.02
59 60 0.824109 ACGAGATCCGAGCAAATCCA 59.176 50.000 10.05 0.00 41.76 3.41
60 61 1.492720 GACGAGATCCGAGCAAATCC 58.507 55.000 10.05 0.00 41.76 3.01
61 62 1.124462 CGACGAGATCCGAGCAAATC 58.876 55.000 10.05 0.00 41.76 2.17
62 63 0.456221 ACGACGAGATCCGAGCAAAT 59.544 50.000 0.00 0.00 41.76 2.32
63 64 0.242825 AACGACGAGATCCGAGCAAA 59.757 50.000 0.00 0.00 41.76 3.68
64 65 0.456142 CAACGACGAGATCCGAGCAA 60.456 55.000 0.00 0.00 41.76 3.91
65 66 1.136774 CAACGACGAGATCCGAGCA 59.863 57.895 0.00 0.00 41.76 4.26
66 67 0.456312 AACAACGACGAGATCCGAGC 60.456 55.000 0.00 2.24 41.76 5.03
67 68 1.536149 GAACAACGACGAGATCCGAG 58.464 55.000 0.00 6.49 41.76 4.63
68 69 0.179207 CGAACAACGACGAGATCCGA 60.179 55.000 0.00 0.00 45.77 4.55
69 70 0.453950 ACGAACAACGACGAGATCCG 60.454 55.000 0.00 2.02 45.77 4.18
70 71 1.135746 AGACGAACAACGACGAGATCC 60.136 52.381 0.00 0.00 45.77 3.36
71 72 2.244281 AGACGAACAACGACGAGATC 57.756 50.000 0.00 0.00 45.77 2.75
72 73 2.473540 CGTAGACGAACAACGACGAGAT 60.474 50.000 0.00 0.00 45.77 2.75
73 74 1.136529 CGTAGACGAACAACGACGAGA 60.137 52.381 0.00 0.00 45.77 4.04
74 75 1.236556 CGTAGACGAACAACGACGAG 58.763 55.000 0.00 0.00 45.77 4.18
75 76 0.581529 ACGTAGACGAACAACGACGA 59.418 50.000 9.41 0.00 45.77 4.20
76 77 1.376856 GAACGTAGACGAACAACGACG 59.623 52.381 9.41 0.00 45.77 5.12
77 78 1.376856 CGAACGTAGACGAACAACGAC 59.623 52.381 9.41 0.00 45.77 4.34
78 79 1.003972 ACGAACGTAGACGAACAACGA 60.004 47.619 9.41 0.00 45.77 3.85
80 81 2.098211 CACACGAACGTAGACGAACAAC 60.098 50.000 9.41 0.00 43.02 3.32
81 82 2.110990 CACACGAACGTAGACGAACAA 58.889 47.619 9.41 0.00 43.02 2.83
82 83 1.063912 ACACACGAACGTAGACGAACA 59.936 47.619 9.41 0.00 43.02 3.18
83 84 1.705559 GACACACGAACGTAGACGAAC 59.294 52.381 9.41 1.55 43.02 3.95
84 85 1.599071 AGACACACGAACGTAGACGAA 59.401 47.619 9.41 0.00 43.02 3.85
85 86 1.220529 AGACACACGAACGTAGACGA 58.779 50.000 9.41 0.00 43.02 4.20
86 87 1.967908 GAAGACACACGAACGTAGACG 59.032 52.381 0.00 0.00 46.33 4.18
87 88 1.967908 CGAAGACACACGAACGTAGAC 59.032 52.381 0.00 0.00 0.00 2.59
88 89 1.069703 CCGAAGACACACGAACGTAGA 60.070 52.381 0.00 0.00 0.00 2.59
89 90 1.324718 CCGAAGACACACGAACGTAG 58.675 55.000 0.00 0.00 0.00 3.51
90 91 0.662619 ACCGAAGACACACGAACGTA 59.337 50.000 0.00 0.00 0.00 3.57
91 92 0.179129 AACCGAAGACACACGAACGT 60.179 50.000 0.00 0.00 0.00 3.99
92 93 0.925466 AAACCGAAGACACACGAACG 59.075 50.000 0.00 0.00 0.00 3.95
93 94 1.004292 CCAAACCGAAGACACACGAAC 60.004 52.381 0.00 0.00 0.00 3.95
94 95 1.134759 TCCAAACCGAAGACACACGAA 60.135 47.619 0.00 0.00 0.00 3.85
95 96 0.460722 TCCAAACCGAAGACACACGA 59.539 50.000 0.00 0.00 0.00 4.35
96 97 1.459592 GATCCAAACCGAAGACACACG 59.540 52.381 0.00 0.00 0.00 4.49
97 98 1.804748 GGATCCAAACCGAAGACACAC 59.195 52.381 6.95 0.00 0.00 3.82
98 99 1.697432 AGGATCCAAACCGAAGACACA 59.303 47.619 15.82 0.00 0.00 3.72
99 100 2.474410 AGGATCCAAACCGAAGACAC 57.526 50.000 15.82 0.00 0.00 3.67
100 101 2.290071 GGAAGGATCCAAACCGAAGACA 60.290 50.000 15.82 0.00 45.79 3.41
101 102 2.357075 GGAAGGATCCAAACCGAAGAC 58.643 52.381 15.82 0.00 45.79 3.01
102 103 1.066430 CGGAAGGATCCAAACCGAAGA 60.066 52.381 28.08 0.00 46.97 2.87
103 104 1.369625 CGGAAGGATCCAAACCGAAG 58.630 55.000 28.08 8.79 46.97 3.79
104 105 3.543884 CGGAAGGATCCAAACCGAA 57.456 52.632 28.08 0.00 46.97 4.30
105 106 2.673685 TCGGAAGGATCCAAACCGA 58.326 52.632 29.50 29.50 46.97 4.69
106 107 1.583054 GATCGGAAGGATCCAAACCG 58.417 55.000 26.93 26.93 46.97 4.44
114 115 7.270047 TGAAAAATAACGTAGATCGGAAGGAT 58.730 34.615 0.00 0.00 44.69 3.24
115 116 6.632909 TGAAAAATAACGTAGATCGGAAGGA 58.367 36.000 0.00 0.00 44.69 3.36
116 117 6.897259 TGAAAAATAACGTAGATCGGAAGG 57.103 37.500 0.00 0.00 44.69 3.46
117 118 7.274367 CGATGAAAAATAACGTAGATCGGAAG 58.726 38.462 0.00 0.00 44.69 3.46
118 119 7.157050 CGATGAAAAATAACGTAGATCGGAA 57.843 36.000 0.00 0.00 44.69 4.30
119 120 6.742999 CGATGAAAAATAACGTAGATCGGA 57.257 37.500 0.00 0.00 44.69 4.55
120 121 5.901509 CCGATGAAAAATAACGTAGATCGG 58.098 41.667 0.00 0.00 43.53 4.18
121 122 5.363517 GCCGATGAAAAATAACGTAGATCG 58.636 41.667 0.00 0.00 46.00 3.69
122 123 5.363517 CGCCGATGAAAAATAACGTAGATC 58.636 41.667 0.00 0.00 0.00 2.75
123 124 4.210537 CCGCCGATGAAAAATAACGTAGAT 59.789 41.667 0.00 0.00 0.00 1.98
124 125 3.552699 CCGCCGATGAAAAATAACGTAGA 59.447 43.478 0.00 0.00 0.00 2.59
125 126 3.843510 GCCGCCGATGAAAAATAACGTAG 60.844 47.826 0.00 0.00 0.00 3.51
126 127 2.030701 GCCGCCGATGAAAAATAACGTA 59.969 45.455 0.00 0.00 0.00 3.57
127 128 1.202098 GCCGCCGATGAAAAATAACGT 60.202 47.619 0.00 0.00 0.00 3.99
128 129 1.462791 GCCGCCGATGAAAAATAACG 58.537 50.000 0.00 0.00 0.00 3.18
129 130 1.462791 CGCCGCCGATGAAAAATAAC 58.537 50.000 0.00 0.00 36.29 1.89
130 131 0.378962 CCGCCGCCGATGAAAAATAA 59.621 50.000 0.00 0.00 36.29 1.40
131 132 0.745128 ACCGCCGCCGATGAAAAATA 60.745 50.000 0.00 0.00 36.29 1.40
132 133 1.591504 AACCGCCGCCGATGAAAAAT 61.592 50.000 0.00 0.00 36.29 1.82
133 134 2.262303 AACCGCCGCCGATGAAAAA 61.262 52.632 0.00 0.00 36.29 1.94
134 135 2.670251 AACCGCCGCCGATGAAAA 60.670 55.556 0.00 0.00 36.29 2.29
135 136 3.427425 CAACCGCCGCCGATGAAA 61.427 61.111 0.00 0.00 36.29 2.69
143 144 4.389576 CAGAACAGCAACCGCCGC 62.390 66.667 0.00 0.00 39.83 6.53
144 145 3.726517 CCAGAACAGCAACCGCCG 61.727 66.667 0.00 0.00 39.83 6.46
145 146 3.365265 CCCAGAACAGCAACCGCC 61.365 66.667 0.00 0.00 39.83 6.13
146 147 3.365265 CCCCAGAACAGCAACCGC 61.365 66.667 0.00 0.00 38.99 5.68
147 148 2.113139 ACCCCAGAACAGCAACCG 59.887 61.111 0.00 0.00 0.00 4.44
148 149 2.564721 GCACCCCAGAACAGCAACC 61.565 63.158 0.00 0.00 0.00 3.77
149 150 1.529244 AGCACCCCAGAACAGCAAC 60.529 57.895 0.00 0.00 0.00 4.17
150 151 1.529010 CAGCACCCCAGAACAGCAA 60.529 57.895 0.00 0.00 0.00 3.91
151 152 2.113774 CAGCACCCCAGAACAGCA 59.886 61.111 0.00 0.00 0.00 4.41
152 153 2.674380 CCAGCACCCCAGAACAGC 60.674 66.667 0.00 0.00 0.00 4.40
153 154 1.302832 GACCAGCACCCCAGAACAG 60.303 63.158 0.00 0.00 0.00 3.16
154 155 2.829384 GGACCAGCACCCCAGAACA 61.829 63.158 0.00 0.00 0.00 3.18
155 156 1.198759 TAGGACCAGCACCCCAGAAC 61.199 60.000 0.00 0.00 0.00 3.01
156 157 0.253160 ATAGGACCAGCACCCCAGAA 60.253 55.000 0.00 0.00 0.00 3.02
157 158 0.982852 CATAGGACCAGCACCCCAGA 60.983 60.000 0.00 0.00 0.00 3.86
158 159 1.528824 CATAGGACCAGCACCCCAG 59.471 63.158 0.00 0.00 0.00 4.45
159 160 2.000701 CCATAGGACCAGCACCCCA 61.001 63.158 0.00 0.00 0.00 4.96
160 161 2.757124 CCCATAGGACCAGCACCCC 61.757 68.421 0.00 0.00 33.47 4.95
161 162 2.757124 CCCCATAGGACCAGCACCC 61.757 68.421 0.00 0.00 38.24 4.61
162 163 2.919043 CCCCATAGGACCAGCACC 59.081 66.667 0.00 0.00 38.24 5.01
163 164 2.193248 GCCCCATAGGACCAGCAC 59.807 66.667 0.00 0.00 38.24 4.40
164 165 3.096495 GGCCCCATAGGACCAGCA 61.096 66.667 0.00 0.00 37.96 4.41
170 171 1.407656 CGTGCTAAGGCCCCATAGGA 61.408 60.000 0.00 0.00 38.24 2.94
171 172 1.071471 CGTGCTAAGGCCCCATAGG 59.929 63.158 0.00 0.00 37.74 2.57
172 173 0.249911 GTCGTGCTAAGGCCCCATAG 60.250 60.000 0.00 0.67 37.74 2.23
173 174 1.827394 GTCGTGCTAAGGCCCCATA 59.173 57.895 0.00 0.00 37.74 2.74
174 175 2.590092 GTCGTGCTAAGGCCCCAT 59.410 61.111 0.00 0.00 37.74 4.00
175 176 4.077184 CGTCGTGCTAAGGCCCCA 62.077 66.667 0.00 0.00 37.74 4.96
176 177 3.766691 TCGTCGTGCTAAGGCCCC 61.767 66.667 0.00 0.00 37.74 5.80
177 178 2.502692 AAGTCGTCGTGCTAAGGCCC 62.503 60.000 0.00 0.00 37.74 5.80
178 179 1.077089 GAAGTCGTCGTGCTAAGGCC 61.077 60.000 0.00 0.00 37.74 5.19
179 180 1.077089 GGAAGTCGTCGTGCTAAGGC 61.077 60.000 0.00 0.00 39.26 4.35
180 181 0.458025 GGGAAGTCGTCGTGCTAAGG 60.458 60.000 0.00 0.00 0.00 2.69
181 182 0.797249 CGGGAAGTCGTCGTGCTAAG 60.797 60.000 0.00 0.00 0.00 2.18
182 183 1.210931 CGGGAAGTCGTCGTGCTAA 59.789 57.895 0.00 0.00 0.00 3.09
183 184 1.672030 TCGGGAAGTCGTCGTGCTA 60.672 57.895 0.00 0.00 0.00 3.49
184 185 2.981909 TCGGGAAGTCGTCGTGCT 60.982 61.111 0.00 0.00 0.00 4.40
185 186 2.804090 GTCGGGAAGTCGTCGTGC 60.804 66.667 0.00 0.00 0.00 5.34
186 187 1.442184 CAGTCGGGAAGTCGTCGTG 60.442 63.158 0.00 0.00 0.00 4.35
187 188 1.849976 GACAGTCGGGAAGTCGTCGT 61.850 60.000 0.00 0.00 0.00 4.34
188 189 1.154263 GACAGTCGGGAAGTCGTCG 60.154 63.158 0.00 0.00 0.00 5.12
189 190 1.130186 GTAGACAGTCGGGAAGTCGTC 59.870 57.143 0.00 0.00 37.36 4.20
190 191 1.163554 GTAGACAGTCGGGAAGTCGT 58.836 55.000 0.00 0.00 37.36 4.34
191 192 1.451067 AGTAGACAGTCGGGAAGTCG 58.549 55.000 0.00 0.00 37.36 4.18
192 193 3.341823 TGTAGTAGACAGTCGGGAAGTC 58.658 50.000 0.00 0.00 32.86 3.01
193 194 3.430042 TGTAGTAGACAGTCGGGAAGT 57.570 47.619 0.00 0.00 32.86 3.01
194 195 3.504906 TGTTGTAGTAGACAGTCGGGAAG 59.495 47.826 0.00 0.00 39.88 3.46
195 196 3.489355 TGTTGTAGTAGACAGTCGGGAA 58.511 45.455 0.00 0.00 39.88 3.97
196 197 3.144657 TGTTGTAGTAGACAGTCGGGA 57.855 47.619 0.00 0.00 39.88 5.14
197 198 3.255149 ACTTGTTGTAGTAGACAGTCGGG 59.745 47.826 0.00 0.00 39.88 5.14
198 199 4.500603 ACTTGTTGTAGTAGACAGTCGG 57.499 45.455 0.00 0.00 39.88 4.79
199 200 5.173312 CACAACTTGTTGTAGTAGACAGTCG 59.827 44.000 17.26 0.00 39.88 4.18
200 201 5.050972 GCACAACTTGTTGTAGTAGACAGTC 60.051 44.000 17.26 0.00 39.88 3.51
201 202 4.809426 GCACAACTTGTTGTAGTAGACAGT 59.191 41.667 17.26 0.00 39.88 3.55
202 203 4.211374 GGCACAACTTGTTGTAGTAGACAG 59.789 45.833 17.26 5.63 39.88 3.51
203 204 4.124238 GGCACAACTTGTTGTAGTAGACA 58.876 43.478 17.26 0.00 35.78 3.41
204 205 3.497262 GGGCACAACTTGTTGTAGTAGAC 59.503 47.826 17.26 8.51 33.17 2.59
205 206 3.735591 GGGCACAACTTGTTGTAGTAGA 58.264 45.455 17.26 0.00 33.17 2.59
206 207 2.478894 CGGGCACAACTTGTTGTAGTAG 59.521 50.000 17.26 7.80 33.17 2.57
207 208 2.485903 CGGGCACAACTTGTTGTAGTA 58.514 47.619 17.26 0.00 33.17 1.82
208 209 1.305201 CGGGCACAACTTGTTGTAGT 58.695 50.000 17.26 0.00 33.17 2.73
209 210 0.591170 CCGGGCACAACTTGTTGTAG 59.409 55.000 17.26 12.96 33.17 2.74
210 211 1.448922 GCCGGGCACAACTTGTTGTA 61.449 55.000 15.62 0.00 33.17 2.41
211 212 2.781158 GCCGGGCACAACTTGTTGT 61.781 57.895 15.62 12.73 35.14 3.32
212 213 2.027460 GCCGGGCACAACTTGTTG 59.973 61.111 15.62 11.44 0.00 3.33
213 214 2.123897 AGCCGGGCACAACTTGTT 60.124 55.556 23.09 0.00 0.00 2.83
214 215 2.594592 GAGCCGGGCACAACTTGT 60.595 61.111 23.09 0.00 0.00 3.16
215 216 3.365265 GGAGCCGGGCACAACTTG 61.365 66.667 23.09 0.00 0.00 3.16
216 217 3.850098 CTGGAGCCGGGCACAACTT 62.850 63.158 23.09 0.00 0.00 2.66
217 218 4.335647 CTGGAGCCGGGCACAACT 62.336 66.667 23.09 0.00 0.00 3.16
231 232 2.865598 ATCGCTCCTCCATCGCTGG 61.866 63.158 0.00 0.00 44.64 4.85
232 233 1.664017 CATCGCTCCTCCATCGCTG 60.664 63.158 0.00 0.00 0.00 5.18
233 234 1.829970 TCATCGCTCCTCCATCGCT 60.830 57.895 0.00 0.00 0.00 4.93
234 235 1.663074 GTCATCGCTCCTCCATCGC 60.663 63.158 0.00 0.00 0.00 4.58
235 236 1.371022 CGTCATCGCTCCTCCATCG 60.371 63.158 0.00 0.00 0.00 3.84
236 237 1.006805 CCGTCATCGCTCCTCCATC 60.007 63.158 0.00 0.00 35.54 3.51
237 238 3.133014 CCGTCATCGCTCCTCCAT 58.867 61.111 0.00 0.00 35.54 3.41
238 239 3.838271 GCCGTCATCGCTCCTCCA 61.838 66.667 0.00 0.00 35.54 3.86
239 240 4.933064 CGCCGTCATCGCTCCTCC 62.933 72.222 0.00 0.00 35.54 4.30
240 241 4.933064 CCGCCGTCATCGCTCCTC 62.933 72.222 0.00 0.00 35.54 3.71
263 264 2.863153 CACCAAAGCGAGCCGAAG 59.137 61.111 0.00 0.00 0.00 3.79
264 265 3.353836 GCACCAAAGCGAGCCGAA 61.354 61.111 0.00 0.00 0.00 4.30
265 266 3.825160 AAGCACCAAAGCGAGCCGA 62.825 57.895 0.00 0.00 40.15 5.54
266 267 3.357079 AAGCACCAAAGCGAGCCG 61.357 61.111 0.00 0.00 40.15 5.52
267 268 1.234615 TACAAGCACCAAAGCGAGCC 61.235 55.000 0.00 0.00 40.15 4.70
268 269 0.166814 CTACAAGCACCAAAGCGAGC 59.833 55.000 0.00 0.00 40.15 5.03
269 270 0.166814 GCTACAAGCACCAAAGCGAG 59.833 55.000 0.00 0.00 41.89 5.03
270 271 1.234615 GGCTACAAGCACCAAAGCGA 61.235 55.000 0.78 0.00 44.75 4.93
271 272 1.210155 GGCTACAAGCACCAAAGCG 59.790 57.895 0.78 0.00 44.75 4.68
272 273 1.210155 CGGCTACAAGCACCAAAGC 59.790 57.895 0.78 0.00 44.75 3.51
273 274 0.517316 GACGGCTACAAGCACCAAAG 59.483 55.000 0.78 0.00 44.75 2.77
274 275 1.225376 CGACGGCTACAAGCACCAAA 61.225 55.000 0.78 0.00 44.75 3.28
275 276 1.666553 CGACGGCTACAAGCACCAA 60.667 57.895 0.78 0.00 44.75 3.67
276 277 2.048597 CGACGGCTACAAGCACCA 60.049 61.111 0.78 0.00 44.75 4.17
277 278 3.488090 GCGACGGCTACAAGCACC 61.488 66.667 0.00 0.00 44.75 5.01
287 288 2.117156 TAGACCACCTAGCGACGGC 61.117 63.158 0.00 0.00 40.37 5.68
288 289 1.726265 GTAGACCACCTAGCGACGG 59.274 63.158 0.00 0.00 0.00 4.79
289 290 1.086067 TCGTAGACCACCTAGCGACG 61.086 60.000 0.00 0.00 31.20 5.12
290 291 1.089920 TTCGTAGACCACCTAGCGAC 58.910 55.000 0.00 0.00 34.32 5.19
291 292 2.048444 ATTCGTAGACCACCTAGCGA 57.952 50.000 0.00 0.00 34.32 4.93
292 293 2.865343 AATTCGTAGACCACCTAGCG 57.135 50.000 0.00 0.00 34.32 4.26
293 294 5.511234 TCTAAATTCGTAGACCACCTAGC 57.489 43.478 0.00 0.00 34.32 3.42
294 295 7.040473 ACATCTAAATTCGTAGACCACCTAG 57.960 40.000 0.00 0.00 34.32 3.02
295 296 8.523915 TTACATCTAAATTCGTAGACCACCTA 57.476 34.615 0.00 0.00 34.32 3.08
296 297 5.934402 ACATCTAAATTCGTAGACCACCT 57.066 39.130 0.00 0.00 34.32 4.00
297 298 8.658499 AATTACATCTAAATTCGTAGACCACC 57.342 34.615 0.00 0.00 34.32 4.61
322 323 8.231837 GCAGTACAACGAATACCAGAAATAAAA 58.768 33.333 0.00 0.00 0.00 1.52
323 324 7.148373 GGCAGTACAACGAATACCAGAAATAAA 60.148 37.037 0.00 0.00 0.00 1.40
324 325 6.314400 GGCAGTACAACGAATACCAGAAATAA 59.686 38.462 0.00 0.00 0.00 1.40
325 326 5.813672 GGCAGTACAACGAATACCAGAAATA 59.186 40.000 0.00 0.00 0.00 1.40
326 327 4.634443 GGCAGTACAACGAATACCAGAAAT 59.366 41.667 0.00 0.00 0.00 2.17
327 328 3.998341 GGCAGTACAACGAATACCAGAAA 59.002 43.478 0.00 0.00 0.00 2.52
328 329 3.007074 TGGCAGTACAACGAATACCAGAA 59.993 43.478 0.00 0.00 0.00 3.02
329 330 2.563620 TGGCAGTACAACGAATACCAGA 59.436 45.455 0.00 0.00 0.00 3.86
330 331 2.967362 TGGCAGTACAACGAATACCAG 58.033 47.619 0.00 0.00 0.00 4.00
331 332 3.055747 TCATGGCAGTACAACGAATACCA 60.056 43.478 0.00 0.00 0.00 3.25
332 333 3.527533 TCATGGCAGTACAACGAATACC 58.472 45.455 0.00 0.00 0.00 2.73
333 334 5.293324 TCAATCATGGCAGTACAACGAATAC 59.707 40.000 0.00 0.00 0.00 1.89
334 335 5.423886 TCAATCATGGCAGTACAACGAATA 58.576 37.500 0.00 0.00 0.00 1.75
335 336 4.260985 TCAATCATGGCAGTACAACGAAT 58.739 39.130 0.00 0.00 0.00 3.34
336 337 3.669536 TCAATCATGGCAGTACAACGAA 58.330 40.909 0.00 0.00 0.00 3.85
337 338 3.326836 TCAATCATGGCAGTACAACGA 57.673 42.857 0.00 0.00 0.00 3.85
338 339 4.418013 TTTCAATCATGGCAGTACAACG 57.582 40.909 0.00 0.00 0.00 4.10
339 340 6.389091 TCATTTTCAATCATGGCAGTACAAC 58.611 36.000 0.00 0.00 0.00 3.32
340 341 6.587206 TCATTTTCAATCATGGCAGTACAA 57.413 33.333 0.00 0.00 0.00 2.41
341 342 6.587206 TTCATTTTCAATCATGGCAGTACA 57.413 33.333 0.00 0.00 0.00 2.90
342 343 8.623903 TCTATTCATTTTCAATCATGGCAGTAC 58.376 33.333 0.00 0.00 0.00 2.73
343 344 8.750515 TCTATTCATTTTCAATCATGGCAGTA 57.249 30.769 0.00 0.00 0.00 2.74
344 345 7.649533 TCTATTCATTTTCAATCATGGCAGT 57.350 32.000 0.00 0.00 0.00 4.40
345 346 8.978539 CAATCTATTCATTTTCAATCATGGCAG 58.021 33.333 0.00 0.00 0.00 4.85
346 347 8.697292 TCAATCTATTCATTTTCAATCATGGCA 58.303 29.630 0.00 0.00 0.00 4.92
347 348 9.537192 TTCAATCTATTCATTTTCAATCATGGC 57.463 29.630 0.00 0.00 0.00 4.40
358 359 9.423061 CCGGAAAAACTTTCAATCTATTCATTT 57.577 29.630 0.00 0.00 0.00 2.32
359 360 7.545615 GCCGGAAAAACTTTCAATCTATTCATT 59.454 33.333 5.05 0.00 0.00 2.57
360 361 7.035612 GCCGGAAAAACTTTCAATCTATTCAT 58.964 34.615 5.05 0.00 0.00 2.57
361 362 6.015856 TGCCGGAAAAACTTTCAATCTATTCA 60.016 34.615 5.05 0.00 0.00 2.57
362 363 6.386654 TGCCGGAAAAACTTTCAATCTATTC 58.613 36.000 5.05 0.00 0.00 1.75
363 364 6.339587 TGCCGGAAAAACTTTCAATCTATT 57.660 33.333 5.05 0.00 0.00 1.73
364 365 5.975693 TGCCGGAAAAACTTTCAATCTAT 57.024 34.783 5.05 0.00 0.00 1.98
365 366 5.776173 TTGCCGGAAAAACTTTCAATCTA 57.224 34.783 5.05 0.00 0.00 1.98
366 367 4.664150 TTGCCGGAAAAACTTTCAATCT 57.336 36.364 5.05 0.00 0.00 2.40
367 368 5.726729 TTTTGCCGGAAAAACTTTCAATC 57.273 34.783 16.82 0.00 30.25 2.67
387 388 3.877508 CCTTCAACGAGAGGTCACTTTTT 59.122 43.478 0.00 0.00 0.00 1.94
388 389 3.467803 CCTTCAACGAGAGGTCACTTTT 58.532 45.455 0.00 0.00 0.00 2.27
389 390 2.807108 GCCTTCAACGAGAGGTCACTTT 60.807 50.000 0.00 0.00 0.00 2.66
409 410 3.120792 CTCCATGCTGCATTTTACATGC 58.879 45.455 13.38 0.00 44.76 4.06
453 454 1.320344 CGACCTCGTTCCATCTGGGA 61.320 60.000 0.00 0.00 46.61 4.37
454 455 1.141881 CGACCTCGTTCCATCTGGG 59.858 63.158 0.00 0.00 33.19 4.45
455 456 4.814900 CGACCTCGTTCCATCTGG 57.185 61.111 0.00 0.00 34.11 3.86
543 550 3.002965 GTCCTTTTCGTTCCAAATCACGT 59.997 43.478 0.00 0.00 37.66 4.49
545 552 4.561735 TGTCCTTTTCGTTCCAAATCAC 57.438 40.909 0.00 0.00 0.00 3.06
588 595 2.159156 TCGTCTTTACAGCAGTGTGTGT 60.159 45.455 8.15 6.97 37.52 3.72
589 596 2.469826 TCGTCTTTACAGCAGTGTGTG 58.530 47.619 8.15 1.71 37.52 3.82
622 629 1.203052 ACATTGATTTTCCTGGCGCAG 59.797 47.619 10.83 4.65 0.00 5.18
664 671 1.000163 GTCACTCAGCGAAGAGGACAA 60.000 52.381 9.02 0.00 39.97 3.18
790 806 3.426695 CGTGGTACCGTCGATTCTTAACT 60.427 47.826 19.92 0.00 0.00 2.24
885 914 8.293699 AGGGTATTTTATTTGGCAAGAAGTAG 57.706 34.615 0.00 0.00 0.00 2.57
892 921 5.837829 AGAGGAGGGTATTTTATTTGGCAA 58.162 37.500 0.00 0.00 0.00 4.52
980 1010 1.065636 TGATGGCTTTCTCCTGCTCTG 60.066 52.381 0.00 0.00 0.00 3.35
986 1016 1.684248 GCACCATGATGGCTTTCTCCT 60.684 52.381 12.25 0.00 42.67 3.69
987 1017 0.743097 GCACCATGATGGCTTTCTCC 59.257 55.000 12.25 0.00 42.67 3.71
993 1023 1.527611 CGGATGCACCATGATGGCT 60.528 57.895 12.25 0.00 42.67 4.75
1095 1127 1.295423 CGGGTTGACGAAGGTGGAT 59.705 57.895 0.00 0.00 35.47 3.41
1608 1640 3.647771 ACCTTGAAGGACCGGCCC 61.648 66.667 19.83 0.00 37.67 5.80
1734 1766 1.515020 CAGCTCCACCTCCTCGAAG 59.485 63.158 0.00 0.00 0.00 3.79
1827 1859 1.738099 CGTCTTGTCCTTGCTCCCG 60.738 63.158 0.00 0.00 0.00 5.14
1969 2001 3.181452 TGACCCAACCACTAACCAACTAC 60.181 47.826 0.00 0.00 0.00 2.73
2041 2092 3.370061 CCATGACCATGATTGATCGATCG 59.630 47.826 20.03 9.36 41.20 3.69
2046 2097 4.330250 CCTACCCATGACCATGATTGATC 58.670 47.826 11.28 0.00 41.20 2.92
2048 2099 2.442878 CCCTACCCATGACCATGATTGA 59.557 50.000 11.28 0.00 41.20 2.57
2049 2100 2.867624 CCCTACCCATGACCATGATTG 58.132 52.381 11.28 2.88 41.20 2.67
2050 2101 1.145738 GCCCTACCCATGACCATGATT 59.854 52.381 11.28 0.98 41.20 2.57
2051 2102 0.773644 GCCCTACCCATGACCATGAT 59.226 55.000 11.28 2.47 41.20 2.45
2052 2103 1.695114 CGCCCTACCCATGACCATGA 61.695 60.000 11.28 0.00 41.20 3.07
2053 2104 1.227943 CGCCCTACCCATGACCATG 60.228 63.158 0.00 3.11 38.51 3.66
2054 2105 1.692749 ACGCCCTACCCATGACCAT 60.693 57.895 0.00 0.00 0.00 3.55
2055 2106 2.285069 ACGCCCTACCCATGACCA 60.285 61.111 0.00 0.00 0.00 4.02
2056 2107 2.189521 CACGCCCTACCCATGACC 59.810 66.667 0.00 0.00 0.00 4.02
2057 2108 2.513897 GCACGCCCTACCCATGAC 60.514 66.667 0.00 0.00 0.00 3.06
2116 2181 2.357760 GCGCCCGTACTTGAACCA 60.358 61.111 0.00 0.00 0.00 3.67
2117 2182 1.303091 ATTGCGCCCGTACTTGAACC 61.303 55.000 4.18 0.00 0.00 3.62
2118 2183 1.361793 TATTGCGCCCGTACTTGAAC 58.638 50.000 4.18 0.00 0.00 3.18
2119 2184 2.096220 TTATTGCGCCCGTACTTGAA 57.904 45.000 4.18 0.00 0.00 2.69
2120 2185 2.096220 TTTATTGCGCCCGTACTTGA 57.904 45.000 4.18 0.00 0.00 3.02
2145 2210 4.971830 TCAAGACGTACGTAAAGTCAACAG 59.028 41.667 22.87 15.40 37.36 3.16
2176 2251 0.546267 ACCACAGCAGGACCAGATCT 60.546 55.000 0.00 0.00 0.00 2.75
2189 2264 3.069016 TCCTACAGTACACAACACCACAG 59.931 47.826 0.00 0.00 0.00 3.66
2193 2268 5.418209 AGATACTCCTACAGTACACAACACC 59.582 44.000 0.00 0.00 40.60 4.16
2195 2270 6.128090 CGAAGATACTCCTACAGTACACAACA 60.128 42.308 0.00 0.00 40.60 3.33
2196 2271 6.128063 ACGAAGATACTCCTACAGTACACAAC 60.128 42.308 0.00 0.00 40.60 3.32
2197 2272 5.942236 ACGAAGATACTCCTACAGTACACAA 59.058 40.000 0.00 0.00 40.60 3.33
2198 2273 5.353400 CACGAAGATACTCCTACAGTACACA 59.647 44.000 0.00 0.00 40.60 3.72
2199 2274 5.353678 ACACGAAGATACTCCTACAGTACAC 59.646 44.000 0.00 0.00 40.60 2.90
2200 2275 5.494724 ACACGAAGATACTCCTACAGTACA 58.505 41.667 0.00 0.00 40.60 2.90
2201 2276 7.727331 ATACACGAAGATACTCCTACAGTAC 57.273 40.000 0.00 0.00 40.60 2.73
2202 2277 8.618677 CAAATACACGAAGATACTCCTACAGTA 58.381 37.037 0.00 0.00 42.09 2.74
2203 2278 7.481642 CAAATACACGAAGATACTCCTACAGT 58.518 38.462 0.00 0.00 39.41 3.55
2204 2279 6.418226 GCAAATACACGAAGATACTCCTACAG 59.582 42.308 0.00 0.00 0.00 2.74
2222 2297 1.740043 GCCATGCCCACTTGCAAATAC 60.740 52.381 0.00 0.00 45.84 1.89
2223 2298 0.536260 GCCATGCCCACTTGCAAATA 59.464 50.000 0.00 0.00 45.84 1.40
2224 2299 1.196104 AGCCATGCCCACTTGCAAAT 61.196 50.000 0.00 0.00 45.84 2.32
2264 2349 1.800805 CATGGATATGGAGACCACGC 58.199 55.000 0.00 0.00 35.80 5.34
2277 2362 2.242196 CTCCCAACCACTAACCATGGAT 59.758 50.000 21.47 9.83 39.87 3.41
2347 2457 8.988064 TTTAGATCAATACTCAGAACAGTGAC 57.012 34.615 0.00 0.00 0.00 3.67
2361 2471 9.500785 TTGCCACATTCGATATTTAGATCAATA 57.499 29.630 0.00 0.00 0.00 1.90
2425 2536 4.585955 TCTTCTACAGTTGTCCTGACAC 57.414 45.455 0.00 0.00 44.49 3.67
2432 2545 5.406780 CCTGACACATTCTTCTACAGTTGTC 59.593 44.000 0.00 0.00 0.00 3.18
2442 2555 4.130118 ACAGTTGTCCTGACACATTCTTC 58.870 43.478 0.00 0.00 44.49 2.87
2443 2556 4.156455 ACAGTTGTCCTGACACATTCTT 57.844 40.909 0.00 0.00 44.49 2.52
2448 2561 3.958147 TCTTCTACAGTTGTCCTGACACA 59.042 43.478 0.00 0.00 44.49 3.72
2449 2562 4.585955 TCTTCTACAGTTGTCCTGACAC 57.414 45.455 0.00 0.00 44.49 3.67
2450 2563 5.808366 ATTCTTCTACAGTTGTCCTGACA 57.192 39.130 0.00 0.00 44.49 3.58
2451 2564 5.808030 GCTATTCTTCTACAGTTGTCCTGAC 59.192 44.000 0.00 0.00 44.49 3.51
2452 2565 5.393135 CGCTATTCTTCTACAGTTGTCCTGA 60.393 44.000 0.00 0.00 44.49 3.86
2454 2567 4.142138 CCGCTATTCTTCTACAGTTGTCCT 60.142 45.833 0.00 0.00 0.00 3.85
2455 2568 4.113354 CCGCTATTCTTCTACAGTTGTCC 58.887 47.826 0.00 0.00 0.00 4.02
2456 2569 4.799428 GTCCGCTATTCTTCTACAGTTGTC 59.201 45.833 0.00 0.00 0.00 3.18
2479 2592 1.072331 GGGTGGGACATATGCTGGTAG 59.928 57.143 1.58 0.00 44.52 3.18
2488 2601 7.235606 TGTCAAAATTTTAATGGGTGGGACATA 59.764 33.333 2.44 0.00 44.52 2.29
2518 2634 3.446873 TGCAACAGTCAAATGTGTTTCCT 59.553 39.130 0.00 0.00 34.62 3.36
2522 2638 6.403418 CCAAAAATGCAACAGTCAAATGTGTT 60.403 34.615 0.00 0.00 37.37 3.32
2546 2662 6.914757 CAGAGGAATTCGAGAATATTTTTGCC 59.085 38.462 0.00 0.00 0.00 4.52
2547 2663 7.697691 TCAGAGGAATTCGAGAATATTTTTGC 58.302 34.615 0.00 0.00 0.00 3.68
2550 2666 7.095439 GCGATCAGAGGAATTCGAGAATATTTT 60.095 37.037 0.00 0.00 33.59 1.82
2553 2669 5.406649 GCGATCAGAGGAATTCGAGAATAT 58.593 41.667 0.00 0.00 33.59 1.28
2561 2677 2.315925 TGTGGCGATCAGAGGAATTC 57.684 50.000 0.00 0.00 0.00 2.17
2607 2723 4.776322 CCATTCCCTGCGGTGCGA 62.776 66.667 0.00 0.00 0.00 5.10
2608 2724 2.658679 TATCCATTCCCTGCGGTGCG 62.659 60.000 0.00 0.00 0.00 5.34
2610 2726 0.250467 CCTATCCATTCCCTGCGGTG 60.250 60.000 0.00 0.00 0.00 4.94
2615 2731 3.118531 CCTATCCCCTATCCATTCCCTG 58.881 54.545 0.00 0.00 0.00 4.45
2631 2747 0.463833 CCGGCCACACTTTCCCTATC 60.464 60.000 2.24 0.00 0.00 2.08
2632 2748 1.607612 CCGGCCACACTTTCCCTAT 59.392 57.895 2.24 0.00 0.00 2.57
2633 2749 2.598787 CCCGGCCACACTTTCCCTA 61.599 63.158 2.24 0.00 0.00 3.53
2634 2750 3.966543 CCCGGCCACACTTTCCCT 61.967 66.667 2.24 0.00 0.00 4.20
2635 2751 3.920093 CTCCCGGCCACACTTTCCC 62.920 68.421 2.24 0.00 0.00 3.97
2636 2752 2.359975 CTCCCGGCCACACTTTCC 60.360 66.667 2.24 0.00 0.00 3.13
2637 2753 1.966451 CACTCCCGGCCACACTTTC 60.966 63.158 2.24 0.00 0.00 2.62
2638 2754 2.113139 CACTCCCGGCCACACTTT 59.887 61.111 2.24 0.00 0.00 2.66
2639 2755 3.168528 ACACTCCCGGCCACACTT 61.169 61.111 2.24 0.00 0.00 3.16
2640 2756 3.941188 CACACTCCCGGCCACACT 61.941 66.667 2.24 0.00 0.00 3.55
2643 2759 4.699522 GACCACACTCCCGGCCAC 62.700 72.222 2.24 0.00 0.00 5.01
2645 2761 3.901797 CTTGACCACACTCCCGGCC 62.902 68.421 0.00 0.00 0.00 6.13
2646 2762 2.358737 CTTGACCACACTCCCGGC 60.359 66.667 0.00 0.00 0.00 6.13
2647 2763 0.602905 GTTCTTGACCACACTCCCGG 60.603 60.000 0.00 0.00 0.00 5.73
2648 2764 0.105964 TGTTCTTGACCACACTCCCG 59.894 55.000 0.00 0.00 0.00 5.14
2649 2765 2.222027 CTTGTTCTTGACCACACTCCC 58.778 52.381 0.00 0.00 0.00 4.30
2650 2766 1.604278 GCTTGTTCTTGACCACACTCC 59.396 52.381 0.00 0.00 0.00 3.85
2651 2767 2.288666 TGCTTGTTCTTGACCACACTC 58.711 47.619 0.00 0.00 0.00 3.51
2652 2768 2.418368 TGCTTGTTCTTGACCACACT 57.582 45.000 0.00 0.00 0.00 3.55
2653 2769 3.715628 AATGCTTGTTCTTGACCACAC 57.284 42.857 0.00 0.00 0.00 3.82
2654 2770 4.260990 CGTAAATGCTTGTTCTTGACCACA 60.261 41.667 0.00 0.00 0.00 4.17
2655 2771 4.024387 TCGTAAATGCTTGTTCTTGACCAC 60.024 41.667 0.00 0.00 0.00 4.16
2656 2772 4.130857 TCGTAAATGCTTGTTCTTGACCA 58.869 39.130 0.00 0.00 0.00 4.02
2657 2773 4.742438 TCGTAAATGCTTGTTCTTGACC 57.258 40.909 0.00 0.00 0.00 4.02
2658 2774 6.691388 ACTTTTCGTAAATGCTTGTTCTTGAC 59.309 34.615 0.00 0.00 0.00 3.18
2659 2775 6.791303 ACTTTTCGTAAATGCTTGTTCTTGA 58.209 32.000 0.00 0.00 0.00 3.02
2660 2776 7.449934 AACTTTTCGTAAATGCTTGTTCTTG 57.550 32.000 0.00 0.00 0.00 3.02
2661 2777 9.233232 CTTAACTTTTCGTAAATGCTTGTTCTT 57.767 29.630 0.00 0.00 0.00 2.52
2662 2778 8.617809 TCTTAACTTTTCGTAAATGCTTGTTCT 58.382 29.630 0.00 0.00 0.00 3.01
2663 2779 8.776680 TCTTAACTTTTCGTAAATGCTTGTTC 57.223 30.769 0.00 0.00 0.00 3.18
2664 2780 9.394477 GATCTTAACTTTTCGTAAATGCTTGTT 57.606 29.630 0.00 0.00 0.00 2.83
2665 2781 8.564574 TGATCTTAACTTTTCGTAAATGCTTGT 58.435 29.630 0.00 0.00 0.00 3.16
2666 2782 8.948853 TGATCTTAACTTTTCGTAAATGCTTG 57.051 30.769 0.00 0.00 0.00 4.01
2667 2783 9.559958 CATGATCTTAACTTTTCGTAAATGCTT 57.440 29.630 0.00 0.00 0.00 3.91
2668 2784 8.730680 ACATGATCTTAACTTTTCGTAAATGCT 58.269 29.630 0.00 0.00 0.00 3.79
2669 2785 8.895932 ACATGATCTTAACTTTTCGTAAATGC 57.104 30.769 0.00 0.00 0.00 3.56
2755 2871 9.715121 TTCACGTAGGTTTTCTCAGTATAAAAT 57.285 29.630 0.00 0.00 0.00 1.82
2756 2872 9.545105 TTTCACGTAGGTTTTCTCAGTATAAAA 57.455 29.630 0.00 0.00 0.00 1.52
2757 2873 9.715121 ATTTCACGTAGGTTTTCTCAGTATAAA 57.285 29.630 0.00 0.00 0.00 1.40
2760 2876 9.715121 TTTATTTCACGTAGGTTTTCTCAGTAT 57.285 29.630 0.00 0.00 0.00 2.12
2761 2877 9.545105 TTTTATTTCACGTAGGTTTTCTCAGTA 57.455 29.630 0.00 0.00 0.00 2.74
2762 2878 8.441312 TTTTATTTCACGTAGGTTTTCTCAGT 57.559 30.769 0.00 0.00 0.00 3.41
2763 2879 8.770828 TCTTTTATTTCACGTAGGTTTTCTCAG 58.229 33.333 0.00 0.00 0.00 3.35
2764 2880 8.665643 TCTTTTATTTCACGTAGGTTTTCTCA 57.334 30.769 0.00 0.00 0.00 3.27
2765 2881 9.940166 TTTCTTTTATTTCACGTAGGTTTTCTC 57.060 29.630 0.00 0.00 0.00 2.87
2861 2977 8.852135 TGTTCATTATACTCCGGTTTTCTTTTT 58.148 29.630 0.00 0.00 0.00 1.94
2862 2978 8.398878 TGTTCATTATACTCCGGTTTTCTTTT 57.601 30.769 0.00 0.00 0.00 2.27
2863 2979 7.989416 TGTTCATTATACTCCGGTTTTCTTT 57.011 32.000 0.00 0.00 0.00 2.52
2864 2980 7.989416 TTGTTCATTATACTCCGGTTTTCTT 57.011 32.000 0.00 0.00 0.00 2.52
2865 2981 7.664318 AGTTTGTTCATTATACTCCGGTTTTCT 59.336 33.333 0.00 0.00 0.00 2.52
2866 2982 7.749126 CAGTTTGTTCATTATACTCCGGTTTTC 59.251 37.037 0.00 0.00 0.00 2.29
2867 2983 7.446013 TCAGTTTGTTCATTATACTCCGGTTTT 59.554 33.333 0.00 0.00 0.00 2.43
2868 2984 6.938030 TCAGTTTGTTCATTATACTCCGGTTT 59.062 34.615 0.00 0.00 0.00 3.27
2869 2985 6.469410 TCAGTTTGTTCATTATACTCCGGTT 58.531 36.000 0.00 0.00 0.00 4.44
2870 2986 6.045072 TCAGTTTGTTCATTATACTCCGGT 57.955 37.500 0.00 0.00 0.00 5.28
2871 2987 6.761242 TCATCAGTTTGTTCATTATACTCCGG 59.239 38.462 0.00 0.00 0.00 5.14
2872 2988 7.770801 TCATCAGTTTGTTCATTATACTCCG 57.229 36.000 0.00 0.00 0.00 4.63
2926 3042 9.810545 TCATCGGTTTTCTTTGTTTATTCTTTT 57.189 25.926 0.00 0.00 0.00 2.27
2927 3043 9.810545 TTCATCGGTTTTCTTTGTTTATTCTTT 57.189 25.926 0.00 0.00 0.00 2.52
2928 3044 9.463443 CTTCATCGGTTTTCTTTGTTTATTCTT 57.537 29.630 0.00 0.00 0.00 2.52
2929 3045 8.846211 TCTTCATCGGTTTTCTTTGTTTATTCT 58.154 29.630 0.00 0.00 0.00 2.40
2930 3046 9.118236 CTCTTCATCGGTTTTCTTTGTTTATTC 57.882 33.333 0.00 0.00 0.00 1.75
2931 3047 8.846211 TCTCTTCATCGGTTTTCTTTGTTTATT 58.154 29.630 0.00 0.00 0.00 1.40
2932 3048 8.391075 TCTCTTCATCGGTTTTCTTTGTTTAT 57.609 30.769 0.00 0.00 0.00 1.40
2933 3049 7.795482 TCTCTTCATCGGTTTTCTTTGTTTA 57.205 32.000 0.00 0.00 0.00 2.01
2934 3050 6.693315 TCTCTTCATCGGTTTTCTTTGTTT 57.307 33.333 0.00 0.00 0.00 2.83
2935 3051 6.884280 ATCTCTTCATCGGTTTTCTTTGTT 57.116 33.333 0.00 0.00 0.00 2.83
2936 3052 7.979444 TTATCTCTTCATCGGTTTTCTTTGT 57.021 32.000 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.