Multiple sequence alignment - TraesCS4B01G050600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G050600 chr4B 100.000 2978 0 0 595 3572 39120047 39123024 0.000000e+00 5500
1 TraesCS4B01G050600 chr4B 100.000 266 0 0 1 266 39119453 39119718 3.200000e-135 492
2 TraesCS4B01G050600 chr4D 93.719 2993 112 39 596 3572 26667916 26670848 0.000000e+00 4416
3 TraesCS4B01G050600 chr4D 92.884 267 8 4 1 266 26667404 26667660 9.360000e-101 377
4 TraesCS4B01G050600 chr4A 94.104 2917 109 34 603 3496 576703968 576701092 0.000000e+00 4375
5 TraesCS4B01G050600 chr4A 93.284 268 6 5 1 266 576704678 576704421 5.590000e-103 385
6 TraesCS4B01G050600 chr5D 84.578 616 95 0 1800 2415 388874 388259 2.360000e-171 612
7 TraesCS4B01G050600 chr5D 83.360 625 102 2 1799 2422 210375309 210374686 8.600000e-161 577
8 TraesCS4B01G050600 chr5D 87.437 398 50 0 1157 1554 389377 388980 3.250000e-125 459
9 TraesCS4B01G050600 chr5D 85.965 399 56 0 1156 1554 210375786 210375388 9.160000e-116 427
10 TraesCS4B01G050600 chrUn 84.416 616 96 0 1800 2415 454677300 454676685 1.100000e-169 606
11 TraesCS4B01G050600 chr5A 84.416 616 96 0 1800 2415 228645 229260 1.100000e-169 606
12 TraesCS4B01G050600 chr5A 84.416 616 96 0 1800 2415 229722 230337 1.100000e-169 606
13 TraesCS4B01G050600 chr5A 83.520 625 101 2 1799 2422 272132568 272131945 1.850000e-162 582
14 TraesCS4B01G050600 chr5A 87.728 383 47 0 1154 1536 228156 228538 7.030000e-122 448
15 TraesCS4B01G050600 chr5A 84.962 399 60 0 1156 1554 272133045 272132647 4.290000e-109 405
16 TraesCS4B01G050600 chr5B 83.840 625 99 2 1799 2422 223984465 223983842 8.540000e-166 593
17 TraesCS4B01G050600 chr5B 85.714 399 57 0 1156 1554 223984941 223984543 4.260000e-114 422
18 TraesCS4B01G050600 chr1B 85.678 398 57 0 1157 1554 11858382 11858779 1.530000e-113 420
19 TraesCS4B01G050600 chr1D 85.427 398 58 0 1157 1554 8712949 8713346 7.130000e-112 414


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G050600 chr4B 39119453 39123024 3571 False 2996.000000 5500 100.0000 1 3572 2 chr4B.!!$F1 3571
1 TraesCS4B01G050600 chr4D 26667404 26670848 3444 False 2396.500000 4416 93.3015 1 3572 2 chr4D.!!$F1 3571
2 TraesCS4B01G050600 chr4A 576701092 576704678 3586 True 2380.000000 4375 93.6940 1 3496 2 chr4A.!!$R1 3495
3 TraesCS4B01G050600 chr5D 388259 389377 1118 True 535.500000 612 86.0075 1157 2415 2 chr5D.!!$R1 1258
4 TraesCS4B01G050600 chr5D 210374686 210375786 1100 True 502.000000 577 84.6625 1156 2422 2 chr5D.!!$R2 1266
5 TraesCS4B01G050600 chrUn 454676685 454677300 615 True 606.000000 606 84.4160 1800 2415 1 chrUn.!!$R1 615
6 TraesCS4B01G050600 chr5A 228156 230337 2181 False 553.333333 606 85.5200 1154 2415 3 chr5A.!!$F1 1261
7 TraesCS4B01G050600 chr5A 272131945 272133045 1100 True 493.500000 582 84.2410 1156 2422 2 chr5A.!!$R1 1266
8 TraesCS4B01G050600 chr5B 223983842 223984941 1099 True 507.500000 593 84.7770 1156 2422 2 chr5B.!!$R1 1266

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
790 914 0.035439 ACAGGTGATTGCGGTTAGGG 60.035 55.0 0.0 0.0 0.0 3.53 F
794 918 0.252197 GTGATTGCGGTTAGGGGTCT 59.748 55.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2517 2672 0.803740 ACTCGTCGTACTCAGCCTTC 59.196 55.0 0.0 0.0 0.00 3.46 R
2789 3044 1.676746 CCTCACCAGGCATCTGATTG 58.323 55.0 0.0 0.0 43.49 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
200 203 4.740822 GCCGTCCCTGCCCACAAT 62.741 66.667 0.00 0.00 0.00 2.71
201 204 2.438434 CCGTCCCTGCCCACAATC 60.438 66.667 0.00 0.00 0.00 2.67
202 205 2.438434 CGTCCCTGCCCACAATCC 60.438 66.667 0.00 0.00 0.00 3.01
203 206 2.043953 GTCCCTGCCCACAATCCC 60.044 66.667 0.00 0.00 0.00 3.85
648 770 1.875576 CGGGAATGTAGATCTGCTGCC 60.876 57.143 12.30 6.47 0.00 4.85
722 844 1.740025 GCCGGAAAACCATTCTCTCTG 59.260 52.381 5.05 0.00 0.00 3.35
723 845 2.876079 GCCGGAAAACCATTCTCTCTGT 60.876 50.000 5.05 0.00 0.00 3.41
724 846 3.412386 CCGGAAAACCATTCTCTCTGTT 58.588 45.455 0.00 0.00 0.00 3.16
725 847 3.821033 CCGGAAAACCATTCTCTCTGTTT 59.179 43.478 0.00 0.00 32.62 2.83
726 848 4.278419 CCGGAAAACCATTCTCTCTGTTTT 59.722 41.667 0.00 0.00 41.98 2.43
766 890 7.515957 TGTTCTTAGTAGTATTAAGTTGCGC 57.484 36.000 0.00 0.00 31.57 6.09
776 900 2.536761 TAAGTTGCGCAGTTACAGGT 57.463 45.000 11.31 0.00 0.00 4.00
777 901 0.944386 AAGTTGCGCAGTTACAGGTG 59.056 50.000 11.31 0.00 0.00 4.00
778 902 0.105964 AGTTGCGCAGTTACAGGTGA 59.894 50.000 11.31 0.00 0.00 4.02
779 903 1.156736 GTTGCGCAGTTACAGGTGAT 58.843 50.000 11.31 0.00 0.00 3.06
780 904 1.535462 GTTGCGCAGTTACAGGTGATT 59.465 47.619 11.31 0.00 0.00 2.57
781 905 1.155889 TGCGCAGTTACAGGTGATTG 58.844 50.000 5.66 0.00 0.00 2.67
784 908 0.447801 GCAGTTACAGGTGATTGCGG 59.552 55.000 0.00 0.00 0.00 5.69
785 909 1.808411 CAGTTACAGGTGATTGCGGT 58.192 50.000 0.00 0.00 0.00 5.68
786 910 2.151202 CAGTTACAGGTGATTGCGGTT 58.849 47.619 0.00 0.00 0.00 4.44
787 911 3.331150 CAGTTACAGGTGATTGCGGTTA 58.669 45.455 0.00 0.00 0.00 2.85
788 912 3.370978 CAGTTACAGGTGATTGCGGTTAG 59.629 47.826 0.00 0.00 0.00 2.34
789 913 2.676342 GTTACAGGTGATTGCGGTTAGG 59.324 50.000 0.00 0.00 0.00 2.69
790 914 0.035439 ACAGGTGATTGCGGTTAGGG 60.035 55.000 0.00 0.00 0.00 3.53
791 915 0.748005 CAGGTGATTGCGGTTAGGGG 60.748 60.000 0.00 0.00 0.00 4.79
792 916 1.205460 AGGTGATTGCGGTTAGGGGT 61.205 55.000 0.00 0.00 0.00 4.95
793 917 0.746923 GGTGATTGCGGTTAGGGGTC 60.747 60.000 0.00 0.00 0.00 4.46
794 918 0.252197 GTGATTGCGGTTAGGGGTCT 59.748 55.000 0.00 0.00 0.00 3.85
795 919 0.539986 TGATTGCGGTTAGGGGTCTC 59.460 55.000 0.00 0.00 0.00 3.36
796 920 0.831307 GATTGCGGTTAGGGGTCTCT 59.169 55.000 0.00 0.00 0.00 3.10
797 921 0.831307 ATTGCGGTTAGGGGTCTCTC 59.169 55.000 0.00 0.00 0.00 3.20
798 922 1.601419 TTGCGGTTAGGGGTCTCTCG 61.601 60.000 0.00 0.00 0.00 4.04
799 923 2.050934 GCGGTTAGGGGTCTCTCGT 61.051 63.158 0.00 0.00 0.00 4.18
800 924 1.807886 CGGTTAGGGGTCTCTCGTG 59.192 63.158 0.00 0.00 0.00 4.35
801 925 0.679002 CGGTTAGGGGTCTCTCGTGA 60.679 60.000 0.00 0.00 0.00 4.35
802 926 1.553706 GGTTAGGGGTCTCTCGTGAA 58.446 55.000 0.00 0.00 0.00 3.18
847 971 5.412594 TCATGCTGCTAGAAAGAATTTTCGT 59.587 36.000 0.00 0.00 45.84 3.85
860 984 6.061231 AGAATTTTCGTCACTGTTTCTTCC 57.939 37.500 0.00 0.00 0.00 3.46
862 986 5.828299 ATTTTCGTCACTGTTTCTTCCAA 57.172 34.783 0.00 0.00 0.00 3.53
863 987 4.609691 TTTCGTCACTGTTTCTTCCAAC 57.390 40.909 0.00 0.00 0.00 3.77
867 991 3.454375 GTCACTGTTTCTTCCAACGAGA 58.546 45.455 0.00 0.00 0.00 4.04
868 992 3.869246 GTCACTGTTTCTTCCAACGAGAA 59.131 43.478 0.00 0.00 0.00 2.87
869 993 4.331717 GTCACTGTTTCTTCCAACGAGAAA 59.668 41.667 0.00 0.00 39.95 2.52
934 1058 3.738282 CACTGCTAGATTGCGTAGATTCC 59.262 47.826 0.00 0.00 35.36 3.01
946 1070 3.740141 GCGTAGATTCCCCTTTGATCGAA 60.740 47.826 0.00 0.00 0.00 3.71
1083 1211 2.819595 CCACCGCATTCCACGAGG 60.820 66.667 0.00 0.00 0.00 4.63
1114 1242 2.323999 TTGGTTCAGGGAAATGCCAT 57.676 45.000 0.00 0.00 38.95 4.40
1121 1249 2.025037 TCAGGGAAATGCCATAGTGCTT 60.025 45.455 0.00 0.00 38.95 3.91
1619 1747 5.359009 CCTGGAATTTAGCATCTTCACATGT 59.641 40.000 0.00 0.00 0.00 3.21
1620 1748 6.543465 CCTGGAATTTAGCATCTTCACATGTA 59.457 38.462 0.00 0.00 0.00 2.29
1621 1749 7.255035 CCTGGAATTTAGCATCTTCACATGTAG 60.255 40.741 0.00 0.00 0.00 2.74
1622 1750 7.112122 TGGAATTTAGCATCTTCACATGTAGT 58.888 34.615 0.00 0.00 0.00 2.73
1641 1769 9.469807 CATGTAGTTAGATGAGGTTAATCTGTC 57.530 37.037 0.00 0.00 35.92 3.51
1729 1866 6.252599 TGATAGGCAGTTAATTGTCATCCT 57.747 37.500 5.31 3.18 0.00 3.24
1730 1867 6.057533 TGATAGGCAGTTAATTGTCATCCTG 58.942 40.000 5.31 0.00 0.00 3.86
1752 1889 6.128553 CCTGTCATACACTGTCAATGTAACAC 60.129 42.308 0.00 0.00 36.19 3.32
2336 2490 4.818546 GCTCCTAGCAGCATGAAGATTAAA 59.181 41.667 0.00 0.00 41.89 1.52
2423 2577 3.012518 CACCTTCCAGCAGGTAAATCAG 58.987 50.000 0.00 0.00 46.27 2.90
2427 2581 1.009829 CCAGCAGGTAAATCAGCGTC 58.990 55.000 0.00 0.00 0.00 5.19
2436 2590 0.742281 AAATCAGCGTCGCAGCATCT 60.742 50.000 21.09 0.00 40.15 2.90
2438 2592 1.426816 ATCAGCGTCGCAGCATCTTG 61.427 55.000 21.09 7.02 40.15 3.02
2478 2633 4.679373 TGGATTTGGTTGCTTTGCTTAA 57.321 36.364 0.00 0.00 0.00 1.85
2491 2646 2.490328 TGCTTAACAGTGTTGCTTGC 57.510 45.000 18.90 15.64 0.00 4.01
2493 2648 2.426738 TGCTTAACAGTGTTGCTTGCTT 59.573 40.909 18.90 0.00 0.00 3.91
2517 2672 0.806868 ACTTGCAGATGTGGATTGCG 59.193 50.000 0.00 0.00 40.62 4.85
2655 2910 7.800847 GTCTCTCTATTTTGTTGCTGTTTCTTC 59.199 37.037 0.00 0.00 0.00 2.87
2682 2937 0.383949 TGGACAAAGTTTTCGGCTGC 59.616 50.000 0.00 0.00 0.00 5.25
2687 2942 1.068541 CAAAGTTTTCGGCTGCCCTAC 60.069 52.381 14.12 6.08 0.00 3.18
2700 2955 1.079612 CCCTACCGGTCACCGTTTC 60.080 63.158 16.87 0.00 46.80 2.78
2857 3112 4.717877 TGATTTTGTCATGTGTCACCTCT 58.282 39.130 0.00 0.00 0.00 3.69
2927 3182 5.563592 TGTCACATGAATGGATTCTCTTGT 58.436 37.500 0.00 0.71 37.67 3.16
2939 3194 8.868522 ATGGATTCTCTTGTTCATTTCTTGTA 57.131 30.769 0.00 0.00 0.00 2.41
3008 3263 5.036737 CCATCGTAATCTGTTTGAAATGGC 58.963 41.667 0.00 0.00 0.00 4.40
3028 3283 2.672478 GCGAGTGATCTGCTGTGTAGTT 60.672 50.000 0.00 0.00 0.00 2.24
3049 3304 1.290009 GCCTTTGCACAATCGGCTT 59.710 52.632 13.79 0.00 35.60 4.35
3097 3352 4.140829 TCCCTACCTGATCTGATCTGATGT 60.141 45.833 21.69 12.88 0.00 3.06
3099 3354 5.078949 CCTACCTGATCTGATCTGATGTCT 58.921 45.833 21.69 0.00 0.00 3.41
3102 3357 5.672503 ACCTGATCTGATCTGATGTCTTTG 58.327 41.667 21.69 8.28 0.00 2.77
3114 3369 3.250762 TGATGTCTTTGCTTTCTTGGTCG 59.749 43.478 0.00 0.00 0.00 4.79
3340 3597 7.942341 TGCTGGTTTATTACTAGGATATTTGGG 59.058 37.037 0.00 0.00 35.98 4.12
3386 3643 3.808726 GGATGATTCTGTCTGCTGTCATC 59.191 47.826 9.67 9.67 40.55 2.92
3387 3644 4.443175 GGATGATTCTGTCTGCTGTCATCT 60.443 45.833 14.80 0.00 40.88 2.90
3458 3715 4.814294 GTTCGCCGGCCTGACGAT 62.814 66.667 23.46 0.00 35.48 3.73
3467 3724 0.179097 GGCCTGACGATTCCTCAGTC 60.179 60.000 0.00 0.01 34.42 3.51
3508 3766 5.299531 TGACATGGTCTTACCGAGATAGAAG 59.700 44.000 0.00 0.00 42.58 2.85
3513 3771 5.591877 TGGTCTTACCGAGATAGAAGGTTAC 59.408 44.000 0.00 0.00 42.58 2.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.658409 GCTGGCACTCGTTGTTTGC 60.658 57.895 0.00 0.00 35.40 3.68
50 53 2.964925 TGCGTGCGGACAACTCAC 60.965 61.111 8.11 0.00 0.00 3.51
607 729 2.956194 CGGCATGAACAGCAGCAA 59.044 55.556 0.00 0.00 0.00 3.91
610 732 4.170062 CGGCGGCATGAACAGCAG 62.170 66.667 10.53 0.00 0.00 4.24
701 823 1.351017 AGAGAGAATGGTTTTCCGGCA 59.649 47.619 0.00 0.00 44.36 5.69
766 890 1.808411 ACCGCAATCACCTGTAACTG 58.192 50.000 0.00 0.00 0.00 3.16
776 900 0.539986 GAGACCCCTAACCGCAATCA 59.460 55.000 0.00 0.00 0.00 2.57
777 901 0.831307 AGAGACCCCTAACCGCAATC 59.169 55.000 0.00 0.00 0.00 2.67
778 902 0.831307 GAGAGACCCCTAACCGCAAT 59.169 55.000 0.00 0.00 0.00 3.56
779 903 1.601419 CGAGAGACCCCTAACCGCAA 61.601 60.000 0.00 0.00 0.00 4.85
780 904 2.050350 CGAGAGACCCCTAACCGCA 61.050 63.158 0.00 0.00 0.00 5.69
781 905 2.050934 ACGAGAGACCCCTAACCGC 61.051 63.158 0.00 0.00 0.00 5.68
784 908 2.758979 TCATTCACGAGAGACCCCTAAC 59.241 50.000 0.00 0.00 0.00 2.34
785 909 3.095912 TCATTCACGAGAGACCCCTAA 57.904 47.619 0.00 0.00 0.00 2.69
786 910 2.820728 TCATTCACGAGAGACCCCTA 57.179 50.000 0.00 0.00 0.00 3.53
787 911 1.938585 TTCATTCACGAGAGACCCCT 58.061 50.000 0.00 0.00 0.00 4.79
788 912 2.939103 CAATTCATTCACGAGAGACCCC 59.061 50.000 0.00 0.00 0.00 4.95
789 913 3.861840 TCAATTCATTCACGAGAGACCC 58.138 45.455 0.00 0.00 0.00 4.46
790 914 5.582269 TCAATCAATTCATTCACGAGAGACC 59.418 40.000 0.00 0.00 0.00 3.85
791 915 6.653273 TCAATCAATTCATTCACGAGAGAC 57.347 37.500 0.00 0.00 0.00 3.36
792 916 8.200120 ACTATCAATCAATTCATTCACGAGAGA 58.800 33.333 0.00 0.00 0.00 3.10
793 917 8.362860 ACTATCAATCAATTCATTCACGAGAG 57.637 34.615 0.00 0.00 0.00 3.20
794 918 8.200120 AGACTATCAATCAATTCATTCACGAGA 58.800 33.333 0.00 0.00 0.00 4.04
795 919 8.362860 AGACTATCAATCAATTCATTCACGAG 57.637 34.615 0.00 0.00 0.00 4.18
796 920 7.981225 TGAGACTATCAATCAATTCATTCACGA 59.019 33.333 0.00 0.00 34.02 4.35
797 921 8.134905 TGAGACTATCAATCAATTCATTCACG 57.865 34.615 0.00 0.00 34.02 4.35
799 923 9.841295 TGATGAGACTATCAATCAATTCATTCA 57.159 29.630 0.00 0.00 42.53 2.57
802 926 8.731605 GCATGATGAGACTATCAATCAATTCAT 58.268 33.333 0.00 0.00 42.53 2.57
847 971 3.812156 TCTCGTTGGAAGAAACAGTGA 57.188 42.857 0.00 0.00 0.00 3.41
879 1003 8.302438 GCTGGCTAAATAAATGCAGAGATTATT 58.698 33.333 0.00 0.00 32.20 1.40
880 1004 7.449395 TGCTGGCTAAATAAATGCAGAGATTAT 59.551 33.333 0.00 0.00 0.00 1.28
946 1070 3.521560 ACAGTTATTGCACATCGATCGT 58.478 40.909 15.94 0.00 0.00 3.73
984 1112 3.624861 CAGCCATTTTCTACCTACAGCAG 59.375 47.826 0.00 0.00 0.00 4.24
1064 1192 3.958147 CTCGTGGAATGCGGTGGCT 62.958 63.158 0.00 0.00 40.82 4.75
1083 1211 2.229784 CCTGAACCAAAGATGCAAGACC 59.770 50.000 0.00 0.00 0.00 3.85
1114 1242 7.171848 ACGAATGTTATGTTACAACAAGCACTA 59.828 33.333 0.00 0.00 43.03 2.74
1121 1249 5.049336 CCACCACGAATGTTATGTTACAACA 60.049 40.000 0.00 0.00 44.06 3.33
1620 1748 9.965902 AATTTGACAGATTAACCTCATCTAACT 57.034 29.630 0.00 0.00 29.36 2.24
1647 1775 6.131544 ACAAAACTAGTGCTACCACAAAAG 57.868 37.500 0.00 0.00 44.53 2.27
1729 1866 6.284459 TGTGTTACATTGACAGTGTATGACA 58.716 36.000 11.16 12.85 32.56 3.58
1730 1867 6.779115 TGTGTTACATTGACAGTGTATGAC 57.221 37.500 11.16 10.85 32.56 3.06
1770 1910 3.565307 TCAAGAGGGCACATTTGAGTTT 58.435 40.909 1.45 0.00 0.00 2.66
2336 2490 2.487986 CCTTTCAGGAGGAGCAACAACT 60.488 50.000 0.00 0.00 37.67 3.16
2436 2590 6.937392 TCCATGAATGAAATGAATGAAGCAA 58.063 32.000 0.00 0.00 0.00 3.91
2438 2592 8.335356 CAAATCCATGAATGAAATGAATGAAGC 58.665 33.333 0.00 0.00 0.00 3.86
2478 2633 1.067000 TGCAAAAGCAAGCAACACTGT 60.067 42.857 0.00 0.00 37.90 3.55
2498 2653 0.806868 CGCAATCCACATCTGCAAGT 59.193 50.000 0.00 0.00 35.78 3.16
2517 2672 0.803740 ACTCGTCGTACTCAGCCTTC 59.196 55.000 0.00 0.00 0.00 3.46
2692 2947 4.392138 GTCTTTGAATAGGAGGAAACGGTG 59.608 45.833 0.00 0.00 0.00 4.94
2789 3044 1.676746 CCTCACCAGGCATCTGATTG 58.323 55.000 0.00 0.00 43.49 2.67
2884 3139 4.579869 ACAACACCATGTAGGATCAAGAC 58.420 43.478 0.00 0.00 41.22 3.01
2927 3182 6.263392 TCCAAATGAACCGTACAAGAAATGAA 59.737 34.615 0.00 0.00 0.00 2.57
3008 3263 2.929531 ACTACACAGCAGATCACTCG 57.070 50.000 0.00 0.00 0.00 4.18
3028 3283 1.664873 CCGATTGTGCAAAGGCCAA 59.335 52.632 5.01 0.00 40.13 4.52
3049 3304 1.746220 CACAGAACCCACCGTCAAAAA 59.254 47.619 0.00 0.00 0.00 1.94
3097 3352 2.631160 TCCGACCAAGAAAGCAAAGA 57.369 45.000 0.00 0.00 0.00 2.52
3099 3354 2.293122 CACATCCGACCAAGAAAGCAAA 59.707 45.455 0.00 0.00 0.00 3.68
3102 3357 0.169009 GCACATCCGACCAAGAAAGC 59.831 55.000 0.00 0.00 0.00 3.51
3114 3369 2.100252 CCATGAACATTCCAGCACATCC 59.900 50.000 0.00 0.00 0.00 3.51
3327 3584 9.277783 CAACTTGTTAGATCCCAAATATCCTAG 57.722 37.037 0.00 0.00 0.00 3.02
3328 3585 8.217799 CCAACTTGTTAGATCCCAAATATCCTA 58.782 37.037 0.00 0.00 0.00 2.94
3329 3586 7.062957 CCAACTTGTTAGATCCCAAATATCCT 58.937 38.462 0.00 0.00 0.00 3.24
3340 3597 1.448985 TGGCGCCAACTTGTTAGATC 58.551 50.000 30.74 0.00 0.00 2.75
3349 3606 1.305213 ATCCCAATTGGCGCCAACT 60.305 52.632 42.32 31.85 38.88 3.16
3456 3713 8.789825 AAATGATATATGCAGACTGAGGAATC 57.210 34.615 6.65 2.89 0.00 2.52
3458 3715 8.985315 AAAAATGATATATGCAGACTGAGGAA 57.015 30.769 6.65 0.00 0.00 3.36
3526 3786 9.070149 ACAAGTATCGTTAGATAAAGACGTTTC 57.930 33.333 0.00 0.00 40.68 2.78
3527 3787 8.857216 CACAAGTATCGTTAGATAAAGACGTTT 58.143 33.333 0.00 0.00 40.68 3.60
3531 3791 7.222224 CACCCACAAGTATCGTTAGATAAAGAC 59.778 40.741 0.00 0.00 40.68 3.01
3532 3792 7.093640 ACACCCACAAGTATCGTTAGATAAAGA 60.094 37.037 0.00 0.00 40.68 2.52
3544 3805 8.204836 AGTATCTCATTAACACCCACAAGTATC 58.795 37.037 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.