Multiple sequence alignment - TraesCS4B01G050400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G050400 chr4B 100.000 3443 0 0 1 3443 39013854 39017296 0.000000e+00 6359
1 TraesCS4B01G050400 chr4B 81.363 1438 260 7 997 2430 133853136 133854569 0.000000e+00 1164
2 TraesCS4B01G050400 chr4B 81.044 1456 257 16 995 2441 73609981 73608536 0.000000e+00 1142
3 TraesCS4B01G050400 chr4D 94.622 2752 105 11 1 2715 26478972 26481717 0.000000e+00 4222
4 TraesCS4B01G050400 chr4D 81.433 1438 259 7 997 2430 94592339 94593772 0.000000e+00 1170
5 TraesCS4B01G050400 chr4A 97.366 1936 40 6 911 2840 576932053 576930123 0.000000e+00 3282
6 TraesCS4B01G050400 chr4A 94.462 939 45 4 1 933 576932999 576932062 0.000000e+00 1439
7 TraesCS4B01G050400 chr4A 81.623 1442 255 9 997 2433 486126018 486124582 0.000000e+00 1186
8 TraesCS4B01G050400 chr4A 85.526 228 11 9 3190 3416 576930128 576929922 5.790000e-53 219
9 TraesCS4B01G050400 chr5B 90.782 1508 130 7 946 2446 577227179 577228684 0.000000e+00 2006
10 TraesCS4B01G050400 chr5D 90.547 1481 136 3 975 2452 469501768 469503247 0.000000e+00 1956
11 TraesCS4B01G050400 chr5A 89.987 1508 142 7 946 2446 590539984 590541489 0.000000e+00 1940
12 TraesCS4B01G050400 chr5A 85.911 653 49 20 277 927 500583535 500582924 0.000000e+00 656
13 TraesCS4B01G050400 chr5A 95.833 120 5 0 911 1030 500582907 500582788 9.750000e-46 195
14 TraesCS4B01G050400 chr2A 87.162 740 54 23 191 927 732301628 732300927 0.000000e+00 802
15 TraesCS4B01G050400 chr2A 86.217 653 47 20 277 927 777177838 777178449 0.000000e+00 667
16 TraesCS4B01G050400 chr2A 85.605 653 51 20 277 927 39913232 39913843 0.000000e+00 645
17 TraesCS4B01G050400 chr2A 85.167 600 46 19 277 874 777209379 777209937 2.980000e-160 575
18 TraesCS4B01G050400 chr2A 96.667 120 4 0 911 1030 732300908 732300789 2.100000e-47 200
19 TraesCS4B01G050400 chr2A 96.667 120 4 0 911 1030 777178465 777178584 2.100000e-47 200
20 TraesCS4B01G050400 chr2B 85.870 736 67 18 193 927 506804263 506803564 0.000000e+00 749
21 TraesCS4B01G050400 chr7B 85.911 653 49 20 277 927 595213605 595212994 0.000000e+00 656
22 TraesCS4B01G050400 chr7B 96.667 120 4 0 911 1030 595212977 595212858 2.100000e-47 200
23 TraesCS4B01G050400 chr3A 85.605 653 51 20 277 927 603855941 603855330 0.000000e+00 645
24 TraesCS4B01G050400 chr3A 95.000 120 6 0 911 1030 603855313 603855194 4.540000e-44 189
25 TraesCS4B01G050400 chr1A 85.276 652 55 20 277 927 10728229 10727618 4.850000e-178 634


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G050400 chr4B 39013854 39017296 3442 False 6359.000000 6359 100.000000 1 3443 1 chr4B.!!$F1 3442
1 TraesCS4B01G050400 chr4B 133853136 133854569 1433 False 1164.000000 1164 81.363000 997 2430 1 chr4B.!!$F2 1433
2 TraesCS4B01G050400 chr4B 73608536 73609981 1445 True 1142.000000 1142 81.044000 995 2441 1 chr4B.!!$R1 1446
3 TraesCS4B01G050400 chr4D 26478972 26481717 2745 False 4222.000000 4222 94.622000 1 2715 1 chr4D.!!$F1 2714
4 TraesCS4B01G050400 chr4D 94592339 94593772 1433 False 1170.000000 1170 81.433000 997 2430 1 chr4D.!!$F2 1433
5 TraesCS4B01G050400 chr4A 576929922 576932999 3077 True 1646.666667 3282 92.451333 1 3416 3 chr4A.!!$R2 3415
6 TraesCS4B01G050400 chr4A 486124582 486126018 1436 True 1186.000000 1186 81.623000 997 2433 1 chr4A.!!$R1 1436
7 TraesCS4B01G050400 chr5B 577227179 577228684 1505 False 2006.000000 2006 90.782000 946 2446 1 chr5B.!!$F1 1500
8 TraesCS4B01G050400 chr5D 469501768 469503247 1479 False 1956.000000 1956 90.547000 975 2452 1 chr5D.!!$F1 1477
9 TraesCS4B01G050400 chr5A 590539984 590541489 1505 False 1940.000000 1940 89.987000 946 2446 1 chr5A.!!$F1 1500
10 TraesCS4B01G050400 chr5A 500582788 500583535 747 True 425.500000 656 90.872000 277 1030 2 chr5A.!!$R1 753
11 TraesCS4B01G050400 chr2A 39913232 39913843 611 False 645.000000 645 85.605000 277 927 1 chr2A.!!$F1 650
12 TraesCS4B01G050400 chr2A 777209379 777209937 558 False 575.000000 575 85.167000 277 874 1 chr2A.!!$F2 597
13 TraesCS4B01G050400 chr2A 732300789 732301628 839 True 501.000000 802 91.914500 191 1030 2 chr2A.!!$R1 839
14 TraesCS4B01G050400 chr2A 777177838 777178584 746 False 433.500000 667 91.442000 277 1030 2 chr2A.!!$F3 753
15 TraesCS4B01G050400 chr2B 506803564 506804263 699 True 749.000000 749 85.870000 193 927 1 chr2B.!!$R1 734
16 TraesCS4B01G050400 chr7B 595212858 595213605 747 True 428.000000 656 91.289000 277 1030 2 chr7B.!!$R1 753
17 TraesCS4B01G050400 chr3A 603855194 603855941 747 True 417.000000 645 90.302500 277 1030 2 chr3A.!!$R1 753
18 TraesCS4B01G050400 chr1A 10727618 10728229 611 True 634.000000 634 85.276000 277 927 1 chr1A.!!$R1 650

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
349 365 1.473080 GCTCTTGAGATCTGGTGAGCC 60.473 57.143 20.81 9.74 40.44 4.70 F
635 652 2.275418 GTTCCCATGGCCGGTGAT 59.725 61.111 6.09 0.00 0.00 3.06 F
2343 2404 2.173669 CATCTTCGACGGGCGCAAT 61.174 57.895 10.83 0.00 40.61 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1662 1723 1.561542 GAGATCCTCTGGGCCAAGAAA 59.438 52.381 12.07 2.53 0.0 2.52 R
2369 2430 1.609555 AGTAGACGATGAAGCCGATCC 59.390 52.381 0.00 0.00 0.0 3.36 R
3418 3487 0.109919 TCGATCGACAACAGACGTGG 60.110 55.000 15.15 0.00 0.0 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 1.616159 CTCATGGATGGCATGCATCA 58.384 50.000 28.67 17.97 39.45 3.07
349 365 1.473080 GCTCTTGAGATCTGGTGAGCC 60.473 57.143 20.81 9.74 40.44 4.70
375 391 4.342951 TCCCTGATCCATGCATCAATTTTC 59.657 41.667 0.03 0.00 32.24 2.29
393 409 9.607988 TCAATTTTCACTTAGTTTGTAGTCTGA 57.392 29.630 0.00 0.00 0.00 3.27
414 430 7.980662 GTCTGATATCTCATCCATCATGTAAGG 59.019 40.741 3.98 0.00 33.66 2.69
424 440 3.941483 CCATCATGTAAGGAGTGTGGTTC 59.059 47.826 0.00 0.00 0.00 3.62
531 548 3.118261 GCTGATCTGGTCCTGGTTTGATA 60.118 47.826 1.46 0.00 0.00 2.15
623 640 5.472478 ACCTTTCTTTTTACTGATCGTTCCC 59.528 40.000 0.00 0.00 0.00 3.97
635 652 2.275418 GTTCCCATGGCCGGTGAT 59.725 61.111 6.09 0.00 0.00 3.06
660 678 7.864108 TCGGATGATTGTTGTGATATTCTTT 57.136 32.000 0.00 0.00 0.00 2.52
678 696 4.836825 TCTTTAGTCTGCCATTCTCCTTG 58.163 43.478 0.00 0.00 0.00 3.61
683 701 3.054139 AGTCTGCCATTCTCCTTGCATAA 60.054 43.478 0.00 0.00 32.53 1.90
1662 1723 4.996434 AAGCTCGCTGCCAACGCT 62.996 61.111 0.00 0.00 44.23 5.07
2343 2404 2.173669 CATCTTCGACGGGCGCAAT 61.174 57.895 10.83 0.00 40.61 3.56
2369 2430 4.521062 CGCCGAGAAGCTCAGGGG 62.521 72.222 0.00 0.00 33.80 4.79
2488 2549 4.749598 GGAATTCAACAAACTTTTGCGGAT 59.250 37.500 7.93 0.00 41.79 4.18
2530 2591 3.750652 GCATAAAATTGGGTTGTGTTGGG 59.249 43.478 0.00 0.00 0.00 4.12
2542 2603 4.441792 GTTGTGTTGGGATCTTTGCTTTT 58.558 39.130 0.00 0.00 0.00 2.27
2625 2686 7.653311 GCTGTTTTGAGGATTGTAAAAGAATGT 59.347 33.333 0.00 0.00 0.00 2.71
2663 2725 9.403110 CCAATGAGCTTATAGCAATTTGATTAC 57.597 33.333 0.00 0.00 45.56 1.89
2724 2786 6.602179 TCAATGTATTTTTCGTTGAGAGCAG 58.398 36.000 0.00 0.00 36.37 4.24
2729 2791 4.536364 TTTTTCGTTGAGAGCAGACTTG 57.464 40.909 0.00 0.00 0.00 3.16
2832 2900 9.148104 GGTTGTTTCTTTGTATTCTACTACGAT 57.852 33.333 0.00 0.00 0.00 3.73
2837 2905 8.832487 TTCTTTGTATTCTACTACGATCGAAC 57.168 34.615 24.34 5.87 0.00 3.95
2840 2908 8.610855 TTTGTATTCTACTACGATCGAACAAG 57.389 34.615 24.34 14.88 0.00 3.16
2841 2909 6.197276 TGTATTCTACTACGATCGAACAAGC 58.803 40.000 24.34 2.61 0.00 4.01
2842 2910 3.687572 TCTACTACGATCGAACAAGCC 57.312 47.619 24.34 0.00 0.00 4.35
2843 2911 3.276857 TCTACTACGATCGAACAAGCCT 58.723 45.455 24.34 0.00 0.00 4.58
2844 2912 2.563471 ACTACGATCGAACAAGCCTC 57.437 50.000 24.34 0.00 0.00 4.70
2845 2913 2.093106 ACTACGATCGAACAAGCCTCT 58.907 47.619 24.34 0.00 0.00 3.69
2846 2914 2.159366 ACTACGATCGAACAAGCCTCTG 60.159 50.000 24.34 0.00 0.00 3.35
2847 2915 0.737715 ACGATCGAACAAGCCTCTGC 60.738 55.000 24.34 0.00 37.95 4.26
2848 2916 1.424493 CGATCGAACAAGCCTCTGCC 61.424 60.000 10.26 0.00 38.69 4.85
2849 2917 0.107945 GATCGAACAAGCCTCTGCCT 60.108 55.000 0.00 0.00 38.69 4.75
2850 2918 0.107945 ATCGAACAAGCCTCTGCCTC 60.108 55.000 0.00 0.00 38.69 4.70
2851 2919 1.188219 TCGAACAAGCCTCTGCCTCT 61.188 55.000 0.00 0.00 38.69 3.69
2852 2920 0.739112 CGAACAAGCCTCTGCCTCTC 60.739 60.000 0.00 0.00 38.69 3.20
2853 2921 0.612744 GAACAAGCCTCTGCCTCTCT 59.387 55.000 0.00 0.00 38.69 3.10
2854 2922 0.324285 AACAAGCCTCTGCCTCTCTG 59.676 55.000 0.00 0.00 38.69 3.35
2855 2923 0.543883 ACAAGCCTCTGCCTCTCTGA 60.544 55.000 0.00 0.00 38.69 3.27
2856 2924 0.612229 CAAGCCTCTGCCTCTCTGAA 59.388 55.000 0.00 0.00 38.69 3.02
2857 2925 1.002888 CAAGCCTCTGCCTCTCTGAAA 59.997 52.381 0.00 0.00 38.69 2.69
2858 2926 0.612744 AGCCTCTGCCTCTCTGAAAC 59.387 55.000 0.00 0.00 38.69 2.78
2859 2927 0.392327 GCCTCTGCCTCTCTGAAACC 60.392 60.000 0.00 0.00 0.00 3.27
2860 2928 0.979665 CCTCTGCCTCTCTGAAACCA 59.020 55.000 0.00 0.00 0.00 3.67
2861 2929 1.066286 CCTCTGCCTCTCTGAAACCAG 60.066 57.143 0.00 0.00 0.00 4.00
2862 2930 1.898472 CTCTGCCTCTCTGAAACCAGA 59.102 52.381 0.00 0.00 38.28 3.86
2876 2944 8.099364 TCTGAAACCAGAGCTTATAACTTTTG 57.901 34.615 0.00 0.00 35.88 2.44
2877 2945 7.719633 TCTGAAACCAGAGCTTATAACTTTTGT 59.280 33.333 0.00 0.00 35.88 2.83
2878 2946 7.871853 TGAAACCAGAGCTTATAACTTTTGTC 58.128 34.615 0.00 0.00 0.00 3.18
2879 2947 7.719633 TGAAACCAGAGCTTATAACTTTTGTCT 59.280 33.333 0.00 0.00 0.00 3.41
2880 2948 7.440523 AACCAGAGCTTATAACTTTTGTCTG 57.559 36.000 0.00 0.00 0.00 3.51
2881 2949 6.769512 ACCAGAGCTTATAACTTTTGTCTGA 58.230 36.000 0.00 0.00 33.48 3.27
2882 2950 7.224297 ACCAGAGCTTATAACTTTTGTCTGAA 58.776 34.615 0.00 0.00 33.48 3.02
2883 2951 7.389053 ACCAGAGCTTATAACTTTTGTCTGAAG 59.611 37.037 0.00 0.00 33.48 3.02
2884 2952 7.389053 CCAGAGCTTATAACTTTTGTCTGAAGT 59.611 37.037 0.00 0.00 38.92 3.01
2885 2953 8.439286 CAGAGCTTATAACTTTTGTCTGAAGTC 58.561 37.037 0.00 0.00 36.38 3.01
2886 2954 8.150945 AGAGCTTATAACTTTTGTCTGAAGTCA 58.849 33.333 0.00 0.00 36.38 3.41
2887 2955 8.677148 AGCTTATAACTTTTGTCTGAAGTCAA 57.323 30.769 0.00 0.00 36.38 3.18
2888 2956 9.120538 AGCTTATAACTTTTGTCTGAAGTCAAA 57.879 29.630 0.00 0.00 36.38 2.69
2889 2957 9.170584 GCTTATAACTTTTGTCTGAAGTCAAAC 57.829 33.333 2.80 0.00 36.38 2.93
2893 2961 7.637709 AACTTTTGTCTGAAGTCAAACAAAC 57.362 32.000 11.50 0.00 40.29 2.93
2894 2962 5.856455 ACTTTTGTCTGAAGTCAAACAAACG 59.144 36.000 11.50 12.09 40.29 3.60
2895 2963 4.349663 TTGTCTGAAGTCAAACAAACGG 57.650 40.909 0.00 0.00 0.00 4.44
2896 2964 3.340034 TGTCTGAAGTCAAACAAACGGT 58.660 40.909 0.00 0.00 0.00 4.83
2897 2965 3.126171 TGTCTGAAGTCAAACAAACGGTG 59.874 43.478 0.00 0.00 0.00 4.94
2898 2966 2.096819 TCTGAAGTCAAACAAACGGTGC 59.903 45.455 0.00 0.00 0.00 5.01
2899 2967 1.813178 TGAAGTCAAACAAACGGTGCA 59.187 42.857 0.00 0.00 0.00 4.57
2900 2968 2.425312 TGAAGTCAAACAAACGGTGCAT 59.575 40.909 0.00 0.00 0.00 3.96
2901 2969 3.628032 TGAAGTCAAACAAACGGTGCATA 59.372 39.130 0.00 0.00 0.00 3.14
2902 2970 4.096532 TGAAGTCAAACAAACGGTGCATAA 59.903 37.500 0.00 0.00 0.00 1.90
2903 2971 4.846779 AGTCAAACAAACGGTGCATAAT 57.153 36.364 0.00 0.00 0.00 1.28
2904 2972 5.195001 AGTCAAACAAACGGTGCATAATT 57.805 34.783 0.00 0.00 0.00 1.40
2905 2973 5.596845 AGTCAAACAAACGGTGCATAATTT 58.403 33.333 0.00 0.00 0.00 1.82
2906 2974 5.689961 AGTCAAACAAACGGTGCATAATTTC 59.310 36.000 0.00 0.00 0.00 2.17
2907 2975 5.460419 GTCAAACAAACGGTGCATAATTTCA 59.540 36.000 0.00 0.00 0.00 2.69
2908 2976 5.460419 TCAAACAAACGGTGCATAATTTCAC 59.540 36.000 0.00 0.00 0.00 3.18
2909 2977 3.908213 ACAAACGGTGCATAATTTCACC 58.092 40.909 11.85 11.85 46.95 4.02
2920 2988 8.153479 GTGCATAATTTCACCATGTATGTAGA 57.847 34.615 0.00 0.00 0.00 2.59
2921 2989 8.620416 GTGCATAATTTCACCATGTATGTAGAA 58.380 33.333 0.00 0.00 0.00 2.10
2922 2990 9.183368 TGCATAATTTCACCATGTATGTAGAAA 57.817 29.630 9.73 9.73 35.03 2.52
2923 2991 9.450807 GCATAATTTCACCATGTATGTAGAAAC 57.549 33.333 9.59 0.00 34.10 2.78
2924 2992 9.650371 CATAATTTCACCATGTATGTAGAAACG 57.350 33.333 9.59 0.00 34.10 3.60
2925 2993 7.915293 AATTTCACCATGTATGTAGAAACGA 57.085 32.000 9.59 0.00 34.10 3.85
2926 2994 8.506168 AATTTCACCATGTATGTAGAAACGAT 57.494 30.769 9.59 0.00 34.10 3.73
2927 2995 9.607988 AATTTCACCATGTATGTAGAAACGATA 57.392 29.630 9.59 0.00 34.10 2.92
2928 2996 9.607988 ATTTCACCATGTATGTAGAAACGATAA 57.392 29.630 9.59 0.00 34.10 1.75
2929 2997 9.607988 TTTCACCATGTATGTAGAAACGATAAT 57.392 29.630 0.00 0.00 0.00 1.28
2930 2998 8.812147 TCACCATGTATGTAGAAACGATAATC 57.188 34.615 0.00 0.00 0.00 1.75
2931 2999 8.417884 TCACCATGTATGTAGAAACGATAATCA 58.582 33.333 0.00 0.00 0.00 2.57
2932 3000 9.040939 CACCATGTATGTAGAAACGATAATCAA 57.959 33.333 0.00 0.00 0.00 2.57
2933 3001 9.042008 ACCATGTATGTAGAAACGATAATCAAC 57.958 33.333 0.00 0.00 0.00 3.18
2934 3002 9.040939 CCATGTATGTAGAAACGATAATCAACA 57.959 33.333 0.00 0.00 0.00 3.33
2935 3003 9.849607 CATGTATGTAGAAACGATAATCAACAC 57.150 33.333 0.00 0.00 0.00 3.32
2936 3004 8.415192 TGTATGTAGAAACGATAATCAACACC 57.585 34.615 0.00 0.00 0.00 4.16
2937 3005 8.255206 TGTATGTAGAAACGATAATCAACACCT 58.745 33.333 0.00 0.00 0.00 4.00
2938 3006 9.740239 GTATGTAGAAACGATAATCAACACCTA 57.260 33.333 0.00 0.00 0.00 3.08
2939 3007 8.644318 ATGTAGAAACGATAATCAACACCTAC 57.356 34.615 0.00 0.00 0.00 3.18
2940 3008 7.604549 TGTAGAAACGATAATCAACACCTACA 58.395 34.615 0.00 0.00 32.91 2.74
2941 3009 6.963049 AGAAACGATAATCAACACCTACAC 57.037 37.500 0.00 0.00 0.00 2.90
2942 3010 5.873164 AGAAACGATAATCAACACCTACACC 59.127 40.000 0.00 0.00 0.00 4.16
2943 3011 4.811969 ACGATAATCAACACCTACACCA 57.188 40.909 0.00 0.00 0.00 4.17
2944 3012 4.501071 ACGATAATCAACACCTACACCAC 58.499 43.478 0.00 0.00 0.00 4.16
2945 3013 4.222145 ACGATAATCAACACCTACACCACT 59.778 41.667 0.00 0.00 0.00 4.00
2946 3014 5.419788 ACGATAATCAACACCTACACCACTA 59.580 40.000 0.00 0.00 0.00 2.74
2947 3015 6.071221 ACGATAATCAACACCTACACCACTAA 60.071 38.462 0.00 0.00 0.00 2.24
2948 3016 6.814644 CGATAATCAACACCTACACCACTAAA 59.185 38.462 0.00 0.00 0.00 1.85
2949 3017 7.494625 CGATAATCAACACCTACACCACTAAAT 59.505 37.037 0.00 0.00 0.00 1.40
2950 3018 9.826574 GATAATCAACACCTACACCACTAAATA 57.173 33.333 0.00 0.00 0.00 1.40
3007 3075 7.993821 ATCTAATGATACTAATTCGGCATCG 57.006 36.000 0.00 0.00 37.82 3.84
3008 3076 6.920817 TCTAATGATACTAATTCGGCATCGT 58.079 36.000 0.00 0.00 37.69 3.73
3009 3077 8.047413 TCTAATGATACTAATTCGGCATCGTA 57.953 34.615 0.00 0.00 37.69 3.43
3010 3078 8.182227 TCTAATGATACTAATTCGGCATCGTAG 58.818 37.037 0.00 0.00 37.69 3.51
3011 3079 5.700722 TGATACTAATTCGGCATCGTAGT 57.299 39.130 0.00 0.00 37.69 2.73
3012 3080 6.080648 TGATACTAATTCGGCATCGTAGTT 57.919 37.500 0.00 0.00 37.69 2.24
3013 3081 6.147581 TGATACTAATTCGGCATCGTAGTTC 58.852 40.000 0.00 0.00 37.69 3.01
3014 3082 4.650754 ACTAATTCGGCATCGTAGTTCT 57.349 40.909 0.00 0.00 37.69 3.01
3015 3083 5.007385 ACTAATTCGGCATCGTAGTTCTT 57.993 39.130 0.00 0.00 37.69 2.52
3016 3084 5.041940 ACTAATTCGGCATCGTAGTTCTTC 58.958 41.667 0.00 0.00 37.69 2.87
3017 3085 3.520290 ATTCGGCATCGTAGTTCTTCA 57.480 42.857 0.00 0.00 37.69 3.02
3018 3086 3.520290 TTCGGCATCGTAGTTCTTCAT 57.480 42.857 0.00 0.00 37.69 2.57
3019 3087 4.642445 TTCGGCATCGTAGTTCTTCATA 57.358 40.909 0.00 0.00 37.69 2.15
3020 3088 4.642445 TCGGCATCGTAGTTCTTCATAA 57.358 40.909 0.00 0.00 37.69 1.90
3021 3089 5.196341 TCGGCATCGTAGTTCTTCATAAT 57.804 39.130 0.00 0.00 37.69 1.28
3022 3090 4.982295 TCGGCATCGTAGTTCTTCATAATG 59.018 41.667 0.00 0.00 37.69 1.90
3023 3091 4.745125 CGGCATCGTAGTTCTTCATAATGT 59.255 41.667 0.00 0.00 0.00 2.71
3024 3092 5.234329 CGGCATCGTAGTTCTTCATAATGTT 59.766 40.000 0.00 0.00 0.00 2.71
3025 3093 6.238103 CGGCATCGTAGTTCTTCATAATGTTT 60.238 38.462 0.00 0.00 0.00 2.83
3026 3094 7.472543 GGCATCGTAGTTCTTCATAATGTTTT 58.527 34.615 0.00 0.00 0.00 2.43
3027 3095 8.609176 GGCATCGTAGTTCTTCATAATGTTTTA 58.391 33.333 0.00 0.00 0.00 1.52
3028 3096 9.422196 GCATCGTAGTTCTTCATAATGTTTTAC 57.578 33.333 0.00 0.00 0.00 2.01
3040 3108 9.522804 TTCATAATGTTTTACAAACTTGACACC 57.477 29.630 0.00 0.00 0.00 4.16
3041 3109 7.858382 TCATAATGTTTTACAAACTTGACACCG 59.142 33.333 0.00 0.00 0.00 4.94
3042 3110 5.570234 ATGTTTTACAAACTTGACACCGT 57.430 34.783 0.00 0.00 0.00 4.83
3043 3111 4.972201 TGTTTTACAAACTTGACACCGTC 58.028 39.130 0.00 0.00 0.00 4.79
3044 3112 4.696402 TGTTTTACAAACTTGACACCGTCT 59.304 37.500 0.00 0.00 33.15 4.18
3045 3113 4.868450 TTTACAAACTTGACACCGTCTG 57.132 40.909 0.00 0.00 33.15 3.51
3046 3114 2.684001 ACAAACTTGACACCGTCTGA 57.316 45.000 0.00 0.00 33.15 3.27
3047 3115 2.277084 ACAAACTTGACACCGTCTGAC 58.723 47.619 0.00 0.00 33.15 3.51
3048 3116 2.093658 ACAAACTTGACACCGTCTGACT 60.094 45.455 6.21 0.00 33.15 3.41
3049 3117 2.936498 CAAACTTGACACCGTCTGACTT 59.064 45.455 6.21 0.00 33.15 3.01
3050 3118 2.510768 ACTTGACACCGTCTGACTTC 57.489 50.000 6.21 0.00 33.15 3.01
3051 3119 1.754803 ACTTGACACCGTCTGACTTCA 59.245 47.619 6.21 0.82 33.15 3.02
3052 3120 2.167693 ACTTGACACCGTCTGACTTCAA 59.832 45.455 6.21 8.14 33.15 2.69
3053 3121 2.971660 TGACACCGTCTGACTTCAAA 57.028 45.000 6.21 0.00 33.15 2.69
3054 3122 2.546778 TGACACCGTCTGACTTCAAAC 58.453 47.619 6.21 0.00 33.15 2.93
3055 3123 2.093921 TGACACCGTCTGACTTCAAACA 60.094 45.455 6.21 0.00 33.15 2.83
3056 3124 2.933906 GACACCGTCTGACTTCAAACAA 59.066 45.455 6.21 0.00 0.00 2.83
3057 3125 3.340034 ACACCGTCTGACTTCAAACAAA 58.660 40.909 6.21 0.00 0.00 2.83
3058 3126 3.754323 ACACCGTCTGACTTCAAACAAAA 59.246 39.130 6.21 0.00 0.00 2.44
3059 3127 4.398044 ACACCGTCTGACTTCAAACAAAAT 59.602 37.500 6.21 0.00 0.00 1.82
3060 3128 5.587043 ACACCGTCTGACTTCAAACAAAATA 59.413 36.000 6.21 0.00 0.00 1.40
3061 3129 6.136071 CACCGTCTGACTTCAAACAAAATAG 58.864 40.000 6.21 0.00 0.00 1.73
3062 3130 6.018262 CACCGTCTGACTTCAAACAAAATAGA 60.018 38.462 6.21 0.00 0.00 1.98
3063 3131 6.710744 ACCGTCTGACTTCAAACAAAATAGAT 59.289 34.615 6.21 0.00 0.00 1.98
3064 3132 7.228706 ACCGTCTGACTTCAAACAAAATAGATT 59.771 33.333 6.21 0.00 0.00 2.40
3065 3133 7.746475 CCGTCTGACTTCAAACAAAATAGATTC 59.254 37.037 6.21 0.00 0.00 2.52
3066 3134 8.499162 CGTCTGACTTCAAACAAAATAGATTCT 58.501 33.333 6.21 0.00 0.00 2.40
3083 3151 9.688592 AATAGATTCTTCAAAAGTTTCTGCAAG 57.311 29.630 0.00 0.00 0.00 4.01
3084 3152 7.338800 AGATTCTTCAAAAGTTTCTGCAAGA 57.661 32.000 0.00 0.00 44.68 3.02
3085 3153 7.949434 AGATTCTTCAAAAGTTTCTGCAAGAT 58.051 30.769 0.00 0.00 46.36 2.40
3086 3154 8.081025 AGATTCTTCAAAAGTTTCTGCAAGATC 58.919 33.333 0.00 0.00 46.36 2.75
3087 3155 6.698008 TCTTCAAAAGTTTCTGCAAGATCA 57.302 33.333 0.00 0.00 46.36 2.92
3088 3156 7.281040 TCTTCAAAAGTTTCTGCAAGATCAT 57.719 32.000 0.00 0.00 46.36 2.45
3089 3157 7.365741 TCTTCAAAAGTTTCTGCAAGATCATC 58.634 34.615 0.00 0.00 46.36 2.92
3090 3158 6.638096 TCAAAAGTTTCTGCAAGATCATCA 57.362 33.333 0.00 0.00 46.36 3.07
3091 3159 7.223260 TCAAAAGTTTCTGCAAGATCATCAT 57.777 32.000 0.00 0.00 46.36 2.45
3092 3160 8.339344 TCAAAAGTTTCTGCAAGATCATCATA 57.661 30.769 0.00 0.00 46.36 2.15
3093 3161 8.456471 TCAAAAGTTTCTGCAAGATCATCATAG 58.544 33.333 0.00 0.00 46.36 2.23
3094 3162 8.456471 CAAAAGTTTCTGCAAGATCATCATAGA 58.544 33.333 0.00 0.00 46.36 1.98
3095 3163 8.571461 AAAGTTTCTGCAAGATCATCATAGAA 57.429 30.769 0.00 0.00 46.36 2.10
3096 3164 7.789273 AGTTTCTGCAAGATCATCATAGAAG 57.211 36.000 0.00 0.00 46.36 2.85
3097 3165 7.337167 AGTTTCTGCAAGATCATCATAGAAGT 58.663 34.615 0.00 0.00 46.36 3.01
3098 3166 7.280428 AGTTTCTGCAAGATCATCATAGAAGTG 59.720 37.037 0.00 0.00 46.36 3.16
3099 3167 6.475596 TCTGCAAGATCATCATAGAAGTGA 57.524 37.500 0.00 0.00 38.67 3.41
3100 3168 7.063934 TCTGCAAGATCATCATAGAAGTGAT 57.936 36.000 0.00 0.00 38.67 3.06
3101 3169 8.186709 TCTGCAAGATCATCATAGAAGTGATA 57.813 34.615 0.00 0.00 38.67 2.15
3102 3170 8.813951 TCTGCAAGATCATCATAGAAGTGATAT 58.186 33.333 0.00 0.00 38.67 1.63
3125 3193 9.979897 ATATATATTTCTTCCCAAATAGCAGCA 57.020 29.630 0.00 0.00 32.87 4.41
3126 3194 4.996788 ATTTCTTCCCAAATAGCAGCAG 57.003 40.909 0.00 0.00 0.00 4.24
3127 3195 2.425143 TCTTCCCAAATAGCAGCAGG 57.575 50.000 0.00 0.00 0.00 4.85
3128 3196 1.064463 TCTTCCCAAATAGCAGCAGGG 60.064 52.381 0.00 0.00 40.98 4.45
3129 3197 0.033208 TTCCCAAATAGCAGCAGGGG 60.033 55.000 0.00 0.00 40.02 4.79
3130 3198 0.918799 TCCCAAATAGCAGCAGGGGA 60.919 55.000 0.00 0.00 42.12 4.81
3131 3199 0.466922 CCCAAATAGCAGCAGGGGAG 60.467 60.000 0.00 0.00 37.80 4.30
3132 3200 1.105759 CCAAATAGCAGCAGGGGAGC 61.106 60.000 0.00 0.00 0.00 4.70
3133 3201 1.105759 CAAATAGCAGCAGGGGAGCC 61.106 60.000 0.00 0.00 34.23 4.70
3134 3202 1.574526 AAATAGCAGCAGGGGAGCCA 61.575 55.000 0.00 0.00 34.23 4.75
3135 3203 1.358830 AATAGCAGCAGGGGAGCCAT 61.359 55.000 0.00 0.00 34.23 4.40
3136 3204 1.358830 ATAGCAGCAGGGGAGCCATT 61.359 55.000 0.00 0.00 34.23 3.16
3137 3205 2.274948 TAGCAGCAGGGGAGCCATTG 62.275 60.000 0.00 0.00 34.23 2.82
3138 3206 2.679092 CAGCAGGGGAGCCATTGA 59.321 61.111 0.00 0.00 34.23 2.57
3139 3207 1.229359 CAGCAGGGGAGCCATTGAT 59.771 57.895 0.00 0.00 34.23 2.57
3140 3208 0.822532 CAGCAGGGGAGCCATTGATC 60.823 60.000 0.00 0.00 34.23 2.92
3141 3209 0.992431 AGCAGGGGAGCCATTGATCT 60.992 55.000 0.00 0.00 34.23 2.75
3142 3210 0.106318 GCAGGGGAGCCATTGATCTT 60.106 55.000 0.00 0.00 0.00 2.40
3143 3211 1.143684 GCAGGGGAGCCATTGATCTTA 59.856 52.381 0.00 0.00 0.00 2.10
3144 3212 2.224967 GCAGGGGAGCCATTGATCTTAT 60.225 50.000 0.00 0.00 0.00 1.73
3145 3213 3.683802 CAGGGGAGCCATTGATCTTATC 58.316 50.000 0.00 0.00 0.00 1.75
3146 3214 3.330110 CAGGGGAGCCATTGATCTTATCT 59.670 47.826 0.00 0.00 0.00 1.98
3147 3215 3.586618 AGGGGAGCCATTGATCTTATCTC 59.413 47.826 0.00 0.00 0.00 2.75
3148 3216 3.328931 GGGGAGCCATTGATCTTATCTCA 59.671 47.826 0.00 0.00 0.00 3.27
3149 3217 4.018597 GGGGAGCCATTGATCTTATCTCAT 60.019 45.833 0.00 0.00 0.00 2.90
3150 3218 4.942483 GGGAGCCATTGATCTTATCTCATG 59.058 45.833 0.00 0.00 0.00 3.07
3151 3219 4.942483 GGAGCCATTGATCTTATCTCATGG 59.058 45.833 11.46 11.46 40.72 3.66
3152 3220 5.514484 GGAGCCATTGATCTTATCTCATGGT 60.514 44.000 14.81 6.85 40.29 3.55
3153 3221 6.296087 GGAGCCATTGATCTTATCTCATGGTA 60.296 42.308 14.81 0.00 40.29 3.25
3154 3222 6.709281 AGCCATTGATCTTATCTCATGGTAG 58.291 40.000 14.81 0.00 40.29 3.18
3155 3223 6.271857 AGCCATTGATCTTATCTCATGGTAGT 59.728 38.462 14.81 4.20 40.29 2.73
3156 3224 6.370994 GCCATTGATCTTATCTCATGGTAGTG 59.629 42.308 14.81 0.00 40.29 2.74
3157 3225 7.448420 CCATTGATCTTATCTCATGGTAGTGT 58.552 38.462 0.00 0.00 36.68 3.55
3158 3226 7.935755 CCATTGATCTTATCTCATGGTAGTGTT 59.064 37.037 0.00 0.00 36.68 3.32
3159 3227 8.986847 CATTGATCTTATCTCATGGTAGTGTTC 58.013 37.037 0.00 0.00 0.00 3.18
3160 3228 7.660030 TGATCTTATCTCATGGTAGTGTTCA 57.340 36.000 0.00 0.00 0.00 3.18
3161 3229 8.255111 TGATCTTATCTCATGGTAGTGTTCAT 57.745 34.615 0.00 0.00 0.00 2.57
3162 3230 8.708378 TGATCTTATCTCATGGTAGTGTTCATT 58.292 33.333 0.00 0.00 0.00 2.57
3163 3231 9.553064 GATCTTATCTCATGGTAGTGTTCATTT 57.447 33.333 0.00 0.00 0.00 2.32
3164 3232 8.722480 TCTTATCTCATGGTAGTGTTCATTTG 57.278 34.615 0.00 0.00 0.00 2.32
3165 3233 5.824904 ATCTCATGGTAGTGTTCATTTGC 57.175 39.130 0.00 0.00 0.00 3.68
3166 3234 4.650734 TCTCATGGTAGTGTTCATTTGCA 58.349 39.130 0.00 0.00 0.00 4.08
3167 3235 4.455533 TCTCATGGTAGTGTTCATTTGCAC 59.544 41.667 0.00 0.00 35.98 4.57
3168 3236 4.140536 TCATGGTAGTGTTCATTTGCACA 58.859 39.130 0.00 0.00 38.02 4.57
3169 3237 4.216042 TCATGGTAGTGTTCATTTGCACAG 59.784 41.667 0.00 0.00 38.02 3.66
3170 3238 2.293122 TGGTAGTGTTCATTTGCACAGC 59.707 45.455 0.00 0.00 38.02 4.40
3171 3239 2.554032 GGTAGTGTTCATTTGCACAGCT 59.446 45.455 0.00 0.00 38.02 4.24
3172 3240 2.787601 AGTGTTCATTTGCACAGCTG 57.212 45.000 13.48 13.48 38.02 4.24
3173 3241 2.300433 AGTGTTCATTTGCACAGCTGA 58.700 42.857 23.35 0.00 38.02 4.26
3174 3242 2.889045 AGTGTTCATTTGCACAGCTGAT 59.111 40.909 23.35 0.00 38.02 2.90
3175 3243 2.984471 GTGTTCATTTGCACAGCTGATG 59.016 45.455 23.35 15.73 35.81 3.07
3176 3244 2.029739 TGTTCATTTGCACAGCTGATGG 60.030 45.455 23.35 10.54 0.00 3.51
3177 3245 2.203470 TCATTTGCACAGCTGATGGA 57.797 45.000 23.35 13.35 0.00 3.41
3178 3246 2.730382 TCATTTGCACAGCTGATGGAT 58.270 42.857 23.35 4.67 0.00 3.41
3179 3247 3.093814 TCATTTGCACAGCTGATGGATT 58.906 40.909 23.35 4.61 0.00 3.01
3180 3248 3.119280 TCATTTGCACAGCTGATGGATTG 60.119 43.478 23.35 15.16 0.00 2.67
3181 3249 1.179152 TTGCACAGCTGATGGATTGG 58.821 50.000 23.35 0.18 0.00 3.16
3182 3250 1.317431 TGCACAGCTGATGGATTGGC 61.317 55.000 23.35 10.48 0.00 4.52
3183 3251 1.317431 GCACAGCTGATGGATTGGCA 61.317 55.000 23.35 0.00 0.00 4.92
3184 3252 0.454600 CACAGCTGATGGATTGGCAC 59.545 55.000 23.35 0.00 0.00 5.01
3185 3253 0.682209 ACAGCTGATGGATTGGCACC 60.682 55.000 23.35 0.00 0.00 5.01
3186 3254 0.681887 CAGCTGATGGATTGGCACCA 60.682 55.000 8.42 0.00 41.83 4.17
3187 3255 0.395311 AGCTGATGGATTGGCACCAG 60.395 55.000 3.08 0.00 40.89 4.00
3188 3256 0.682209 GCTGATGGATTGGCACCAGT 60.682 55.000 3.08 0.00 40.89 4.00
3189 3257 1.100510 CTGATGGATTGGCACCAGTG 58.899 55.000 3.08 0.00 40.89 3.66
3190 3258 0.697658 TGATGGATTGGCACCAGTGA 59.302 50.000 0.99 0.00 40.89 3.41
3191 3259 1.075212 TGATGGATTGGCACCAGTGAA 59.925 47.619 0.99 0.00 40.89 3.18
3192 3260 1.747355 GATGGATTGGCACCAGTGAAG 59.253 52.381 0.99 0.00 40.89 3.02
3193 3261 0.770499 TGGATTGGCACCAGTGAAGA 59.230 50.000 0.99 0.00 33.22 2.87
3194 3262 1.144708 TGGATTGGCACCAGTGAAGAA 59.855 47.619 0.99 0.00 33.22 2.52
3195 3263 2.225091 TGGATTGGCACCAGTGAAGAAT 60.225 45.455 0.99 0.00 33.22 2.40
3196 3264 2.827921 GGATTGGCACCAGTGAAGAATT 59.172 45.455 0.99 0.00 0.00 2.17
3197 3265 4.016444 GGATTGGCACCAGTGAAGAATTA 58.984 43.478 0.99 0.00 0.00 1.40
3198 3266 4.142381 GGATTGGCACCAGTGAAGAATTAC 60.142 45.833 0.99 0.00 0.00 1.89
3199 3267 3.788227 TGGCACCAGTGAAGAATTACT 57.212 42.857 0.99 0.00 0.00 2.24
3200 3268 3.674997 TGGCACCAGTGAAGAATTACTC 58.325 45.455 0.99 0.00 0.00 2.59
3227 3295 1.053424 TACGTCAGAAAAGGGCCAGT 58.947 50.000 6.18 0.00 0.00 4.00
3228 3296 0.250338 ACGTCAGAAAAGGGCCAGTC 60.250 55.000 6.18 0.00 0.00 3.51
3229 3297 0.250295 CGTCAGAAAAGGGCCAGTCA 60.250 55.000 6.18 0.00 0.00 3.41
3230 3298 1.813862 CGTCAGAAAAGGGCCAGTCAA 60.814 52.381 6.18 0.00 0.00 3.18
3231 3299 1.609072 GTCAGAAAAGGGCCAGTCAAC 59.391 52.381 6.18 0.00 0.00 3.18
3232 3300 1.214175 TCAGAAAAGGGCCAGTCAACA 59.786 47.619 6.18 0.00 0.00 3.33
3233 3301 2.158475 TCAGAAAAGGGCCAGTCAACAT 60.158 45.455 6.18 0.00 0.00 2.71
3234 3302 3.073798 TCAGAAAAGGGCCAGTCAACATA 59.926 43.478 6.18 0.00 0.00 2.29
3235 3303 4.019174 CAGAAAAGGGCCAGTCAACATAT 58.981 43.478 6.18 0.00 0.00 1.78
3261 3329 4.643387 ACCAGTGGCGGCAGGAAC 62.643 66.667 22.02 6.73 0.00 3.62
3262 3330 4.641645 CCAGTGGCGGCAGGAACA 62.642 66.667 13.91 0.00 0.00 3.18
3263 3331 3.052082 CAGTGGCGGCAGGAACAG 61.052 66.667 13.91 0.00 0.00 3.16
3264 3332 4.335647 AGTGGCGGCAGGAACAGG 62.336 66.667 13.91 0.00 0.00 4.00
3265 3333 4.329545 GTGGCGGCAGGAACAGGA 62.330 66.667 13.91 0.00 0.00 3.86
3266 3334 3.565214 TGGCGGCAGGAACAGGAA 61.565 61.111 7.97 0.00 0.00 3.36
3331 3399 8.607441 AAAAAGGCTGATAAAAGGAAAACATC 57.393 30.769 0.00 0.00 0.00 3.06
3332 3400 6.916360 AAGGCTGATAAAAGGAAAACATCA 57.084 33.333 0.00 0.00 0.00 3.07
3333 3401 6.916360 AGGCTGATAAAAGGAAAACATCAA 57.084 33.333 0.00 0.00 0.00 2.57
3334 3402 6.928520 AGGCTGATAAAAGGAAAACATCAAG 58.071 36.000 0.00 0.00 0.00 3.02
3377 3446 2.251667 GCGTGTGTCGAGACGTCT 59.748 61.111 20.18 20.18 40.86 4.18
3392 3461 1.589113 GTCTGCCTCTCGAACTGCT 59.411 57.895 0.00 0.00 0.00 4.24
3416 3485 4.271816 CGGCACCGGGATCTCTCG 62.272 72.222 6.32 0.00 35.56 4.04
3417 3486 4.593864 GGCACCGGGATCTCTCGC 62.594 72.222 6.32 0.00 0.00 5.03
3418 3487 4.593864 GCACCGGGATCTCTCGCC 62.594 72.222 6.32 0.00 0.00 5.54
3419 3488 3.917760 CACCGGGATCTCTCGCCC 61.918 72.222 6.32 0.00 41.11 6.13
3420 3489 4.458829 ACCGGGATCTCTCGCCCA 62.459 66.667 6.32 0.00 44.94 5.36
3421 3490 3.917760 CCGGGATCTCTCGCCCAC 61.918 72.222 0.00 0.00 44.94 4.61
3422 3491 4.271816 CGGGATCTCTCGCCCACG 62.272 72.222 0.00 0.00 44.94 4.94
3423 3492 3.148279 GGGATCTCTCGCCCACGT 61.148 66.667 0.00 0.00 44.07 4.49
3424 3493 2.413765 GGATCTCTCGCCCACGTC 59.586 66.667 0.00 0.00 41.18 4.34
3425 3494 2.122167 GGATCTCTCGCCCACGTCT 61.122 63.158 0.00 0.00 41.18 4.18
3426 3495 1.064946 GATCTCTCGCCCACGTCTG 59.935 63.158 0.00 0.00 41.18 3.51
3427 3496 1.658686 GATCTCTCGCCCACGTCTGT 61.659 60.000 0.00 0.00 41.18 3.41
3428 3497 1.251527 ATCTCTCGCCCACGTCTGTT 61.252 55.000 0.00 0.00 41.18 3.16
3429 3498 1.734477 CTCTCGCCCACGTCTGTTG 60.734 63.158 0.00 0.00 41.18 3.33
3430 3499 2.029073 CTCGCCCACGTCTGTTGT 59.971 61.111 0.00 0.00 41.18 3.32
3431 3500 2.022129 CTCGCCCACGTCTGTTGTC 61.022 63.158 0.00 0.00 41.18 3.18
3432 3501 3.403057 CGCCCACGTCTGTTGTCG 61.403 66.667 0.00 0.00 33.53 4.35
3433 3502 2.028484 GCCCACGTCTGTTGTCGA 59.972 61.111 0.00 0.00 0.00 4.20
3434 3503 1.374252 GCCCACGTCTGTTGTCGAT 60.374 57.895 0.00 0.00 0.00 3.59
3435 3504 1.352156 GCCCACGTCTGTTGTCGATC 61.352 60.000 0.00 0.00 0.00 3.69
3436 3505 1.071019 CCCACGTCTGTTGTCGATCG 61.071 60.000 9.36 9.36 0.00 3.69
3437 3506 0.109919 CCACGTCTGTTGTCGATCGA 60.110 55.000 15.15 15.15 0.00 3.59
3438 3507 1.251355 CACGTCTGTTGTCGATCGAG 58.749 55.000 20.09 6.51 0.00 4.04
3439 3508 0.454620 ACGTCTGTTGTCGATCGAGC 60.455 55.000 20.09 13.82 0.00 5.03
3440 3509 1.134530 CGTCTGTTGTCGATCGAGCC 61.135 60.000 20.09 8.53 0.00 4.70
3441 3510 0.171455 GTCTGTTGTCGATCGAGCCT 59.829 55.000 20.09 0.00 0.00 4.58
3442 3511 0.171231 TCTGTTGTCGATCGAGCCTG 59.829 55.000 20.09 12.66 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 2.350522 CATCTTACGGCAAAGTGCTCT 58.649 47.619 0.00 0.00 44.28 4.09
179 187 4.033251 CTACCCCTCCCCACCCCA 62.033 72.222 0.00 0.00 0.00 4.96
180 188 2.985567 GATCTACCCCTCCCCACCCC 62.986 70.000 0.00 0.00 0.00 4.95
182 190 1.461655 GGATCTACCCCTCCCCACC 60.462 68.421 0.00 0.00 0.00 4.61
184 192 0.327191 GTTGGATCTACCCCTCCCCA 60.327 60.000 0.00 0.00 38.00 4.96
349 365 1.697982 TGATGCATGGATCAGGGAGAG 59.302 52.381 24.29 0.00 0.00 3.20
393 409 7.457218 ACACTCCTTACATGATGGATGAGATAT 59.543 37.037 10.60 0.00 35.80 1.63
414 430 2.289694 ACTACAGCATGGAACCACACTC 60.290 50.000 0.00 0.00 43.62 3.51
424 440 1.474077 GAAAGGCCAACTACAGCATGG 59.526 52.381 5.01 0.00 43.62 3.66
467 483 4.864247 GCAAACTCTGAGATCTGAAGACTC 59.136 45.833 12.44 0.00 0.00 3.36
481 497 5.065731 GTCAATGGATCCTAAGCAAACTCTG 59.934 44.000 14.23 0.00 0.00 3.35
531 548 2.236146 TGAATGCGAGTCAGGTTACCAT 59.764 45.455 3.51 0.00 0.00 3.55
617 634 3.697439 ATCACCGGCCATGGGAACG 62.697 63.158 15.13 3.21 0.00 3.95
635 652 7.864108 AAGAATATCACAACAATCATCCGAA 57.136 32.000 0.00 0.00 0.00 4.30
660 678 1.908619 TGCAAGGAGAATGGCAGACTA 59.091 47.619 0.00 0.00 0.00 2.59
678 696 6.797033 GGTAATGCGTATGACAGAATTTATGC 59.203 38.462 3.19 0.00 0.00 3.14
683 701 4.134563 GGGGTAATGCGTATGACAGAATT 58.865 43.478 3.19 0.00 0.00 2.17
1488 1549 2.145397 TGAACAGGTCCTCGATAGCT 57.855 50.000 0.00 0.00 0.00 3.32
1662 1723 1.561542 GAGATCCTCTGGGCCAAGAAA 59.438 52.381 12.07 2.53 0.00 2.52
1881 1942 3.582647 TCTTGATCACCTGCTTCCAGTAA 59.417 43.478 0.00 0.00 37.38 2.24
2326 2387 2.173669 CATTGCGCCCGTCGAAGAT 61.174 57.895 4.18 0.00 40.67 2.40
2369 2430 1.609555 AGTAGACGATGAAGCCGATCC 59.390 52.381 0.00 0.00 0.00 3.36
2462 2523 4.195416 GCAAAAGTTTGTTGAATTCCCCA 58.805 39.130 2.27 0.00 40.24 4.96
2488 2549 2.186350 CTGACAGAAAATGCCGCGCA 62.186 55.000 8.75 2.46 44.86 6.09
2530 2591 7.650903 AGAATGAACAACTCAAAAGCAAAGATC 59.349 33.333 0.00 0.00 37.67 2.75
2542 2603 3.243168 GCAGTGCAAGAATGAACAACTCA 60.243 43.478 11.09 0.00 37.59 3.41
2832 2900 1.188219 AGAGGCAGAGGCTTGTTCGA 61.188 55.000 0.00 0.00 38.98 3.71
2837 2905 0.612229 TTCAGAGAGGCAGAGGCTTG 59.388 55.000 0.00 0.00 38.98 4.01
2840 2908 0.392327 GGTTTCAGAGAGGCAGAGGC 60.392 60.000 0.00 0.00 40.13 4.70
2841 2909 0.979665 TGGTTTCAGAGAGGCAGAGG 59.020 55.000 0.00 0.00 0.00 3.69
2842 2910 1.898472 TCTGGTTTCAGAGAGGCAGAG 59.102 52.381 0.00 0.00 44.39 3.35
2843 2911 2.015456 TCTGGTTTCAGAGAGGCAGA 57.985 50.000 0.00 0.00 44.39 4.26
2851 2919 7.719633 ACAAAAGTTATAAGCTCTGGTTTCAGA 59.280 33.333 0.00 0.00 46.81 3.27
2852 2920 7.875971 ACAAAAGTTATAAGCTCTGGTTTCAG 58.124 34.615 0.00 0.00 42.21 3.02
2853 2921 7.719633 AGACAAAAGTTATAAGCTCTGGTTTCA 59.280 33.333 0.00 0.00 0.00 2.69
2854 2922 8.017946 CAGACAAAAGTTATAAGCTCTGGTTTC 58.982 37.037 0.00 0.00 0.00 2.78
2855 2923 7.719633 TCAGACAAAAGTTATAAGCTCTGGTTT 59.280 33.333 0.00 0.00 0.00 3.27
2856 2924 7.224297 TCAGACAAAAGTTATAAGCTCTGGTT 58.776 34.615 0.00 0.00 0.00 3.67
2857 2925 6.769512 TCAGACAAAAGTTATAAGCTCTGGT 58.230 36.000 0.00 0.00 0.00 4.00
2858 2926 7.389053 ACTTCAGACAAAAGTTATAAGCTCTGG 59.611 37.037 0.00 0.00 33.19 3.86
2859 2927 8.316640 ACTTCAGACAAAAGTTATAAGCTCTG 57.683 34.615 0.00 0.00 33.19 3.35
2860 2928 8.150945 TGACTTCAGACAAAAGTTATAAGCTCT 58.849 33.333 0.00 0.00 37.10 4.09
2861 2929 8.311650 TGACTTCAGACAAAAGTTATAAGCTC 57.688 34.615 0.00 0.00 37.10 4.09
2862 2930 8.677148 TTGACTTCAGACAAAAGTTATAAGCT 57.323 30.769 0.00 0.00 37.10 3.74
2863 2931 9.170584 GTTTGACTTCAGACAAAAGTTATAAGC 57.829 33.333 6.11 0.00 40.22 3.09
2874 2942 3.754323 ACCGTTTGTTTGACTTCAGACAA 59.246 39.130 10.44 10.44 45.38 3.18
2875 2943 3.126171 CACCGTTTGTTTGACTTCAGACA 59.874 43.478 0.00 0.00 38.90 3.41
2876 2944 3.680789 CACCGTTTGTTTGACTTCAGAC 58.319 45.455 0.00 0.00 0.00 3.51
2877 2945 2.096819 GCACCGTTTGTTTGACTTCAGA 59.903 45.455 0.00 0.00 0.00 3.27
2878 2946 2.159448 TGCACCGTTTGTTTGACTTCAG 60.159 45.455 0.00 0.00 0.00 3.02
2879 2947 1.813178 TGCACCGTTTGTTTGACTTCA 59.187 42.857 0.00 0.00 0.00 3.02
2880 2948 2.553079 TGCACCGTTTGTTTGACTTC 57.447 45.000 0.00 0.00 0.00 3.01
2881 2949 4.640789 TTATGCACCGTTTGTTTGACTT 57.359 36.364 0.00 0.00 0.00 3.01
2882 2950 4.846779 ATTATGCACCGTTTGTTTGACT 57.153 36.364 0.00 0.00 0.00 3.41
2883 2951 5.460419 TGAAATTATGCACCGTTTGTTTGAC 59.540 36.000 0.00 0.00 0.00 3.18
2884 2952 5.460419 GTGAAATTATGCACCGTTTGTTTGA 59.540 36.000 0.00 0.00 0.00 2.69
2885 2953 5.332959 GGTGAAATTATGCACCGTTTGTTTG 60.333 40.000 8.68 0.00 44.39 2.93
2886 2954 4.747605 GGTGAAATTATGCACCGTTTGTTT 59.252 37.500 8.68 0.00 44.39 2.83
2887 2955 4.303282 GGTGAAATTATGCACCGTTTGTT 58.697 39.130 8.68 0.00 44.39 2.83
2888 2956 3.908213 GGTGAAATTATGCACCGTTTGT 58.092 40.909 8.68 0.00 44.39 2.83
2895 2963 8.153479 TCTACATACATGGTGAAATTATGCAC 57.847 34.615 7.28 0.00 0.00 4.57
2896 2964 8.744568 TTCTACATACATGGTGAAATTATGCA 57.255 30.769 7.28 0.00 0.00 3.96
2897 2965 9.450807 GTTTCTACATACATGGTGAAATTATGC 57.549 33.333 7.28 0.00 36.40 3.14
2898 2966 9.650371 CGTTTCTACATACATGGTGAAATTATG 57.350 33.333 7.28 2.26 36.40 1.90
2899 2967 9.607988 TCGTTTCTACATACATGGTGAAATTAT 57.392 29.630 7.28 0.00 36.40 1.28
2900 2968 9.607988 ATCGTTTCTACATACATGGTGAAATTA 57.392 29.630 7.28 6.85 36.40 1.40
2901 2969 7.915293 TCGTTTCTACATACATGGTGAAATT 57.085 32.000 7.28 0.00 36.40 1.82
2902 2970 9.607988 TTATCGTTTCTACATACATGGTGAAAT 57.392 29.630 7.28 3.84 36.40 2.17
2903 2971 9.607988 ATTATCGTTTCTACATACATGGTGAAA 57.392 29.630 7.28 7.38 33.84 2.69
2904 2972 9.256477 GATTATCGTTTCTACATACATGGTGAA 57.744 33.333 7.28 0.00 0.00 3.18
2905 2973 8.417884 TGATTATCGTTTCTACATACATGGTGA 58.582 33.333 7.28 0.00 0.00 4.02
2906 2974 8.587952 TGATTATCGTTTCTACATACATGGTG 57.412 34.615 0.00 0.00 0.00 4.17
2907 2975 9.042008 GTTGATTATCGTTTCTACATACATGGT 57.958 33.333 0.00 0.00 0.00 3.55
2908 2976 9.040939 TGTTGATTATCGTTTCTACATACATGG 57.959 33.333 0.00 0.00 0.00 3.66
2909 2977 9.849607 GTGTTGATTATCGTTTCTACATACATG 57.150 33.333 0.00 0.00 31.96 3.21
2910 2978 9.042008 GGTGTTGATTATCGTTTCTACATACAT 57.958 33.333 0.00 0.00 31.96 2.29
2911 2979 8.255206 AGGTGTTGATTATCGTTTCTACATACA 58.745 33.333 0.00 0.00 31.96 2.29
2912 2980 8.644318 AGGTGTTGATTATCGTTTCTACATAC 57.356 34.615 0.00 0.00 31.96 2.39
2913 2981 9.740239 GTAGGTGTTGATTATCGTTTCTACATA 57.260 33.333 0.00 0.00 31.96 2.29
2914 2982 8.255206 TGTAGGTGTTGATTATCGTTTCTACAT 58.745 33.333 0.00 0.00 31.96 2.29
2915 2983 7.543172 GTGTAGGTGTTGATTATCGTTTCTACA 59.457 37.037 0.00 0.00 33.40 2.74
2916 2984 7.009907 GGTGTAGGTGTTGATTATCGTTTCTAC 59.990 40.741 0.00 0.00 0.00 2.59
2917 2985 7.037438 GGTGTAGGTGTTGATTATCGTTTCTA 58.963 38.462 0.00 0.00 0.00 2.10
2918 2986 5.873164 GGTGTAGGTGTTGATTATCGTTTCT 59.127 40.000 0.00 0.00 0.00 2.52
2919 2987 5.640357 TGGTGTAGGTGTTGATTATCGTTTC 59.360 40.000 0.00 0.00 0.00 2.78
2920 2988 5.410439 GTGGTGTAGGTGTTGATTATCGTTT 59.590 40.000 0.00 0.00 0.00 3.60
2921 2989 4.933400 GTGGTGTAGGTGTTGATTATCGTT 59.067 41.667 0.00 0.00 0.00 3.85
2922 2990 4.222145 AGTGGTGTAGGTGTTGATTATCGT 59.778 41.667 0.00 0.00 0.00 3.73
2923 2991 4.755411 AGTGGTGTAGGTGTTGATTATCG 58.245 43.478 0.00 0.00 0.00 2.92
2924 2992 8.732746 ATTTAGTGGTGTAGGTGTTGATTATC 57.267 34.615 0.00 0.00 0.00 1.75
2981 3049 8.959058 CGATGCCGAATTAGTATCATTAGATAC 58.041 37.037 7.39 7.39 45.77 2.24
2982 3050 8.683615 ACGATGCCGAATTAGTATCATTAGATA 58.316 33.333 0.00 0.00 39.50 1.98
2983 3051 7.548097 ACGATGCCGAATTAGTATCATTAGAT 58.452 34.615 0.00 0.00 39.50 1.98
2984 3052 6.920817 ACGATGCCGAATTAGTATCATTAGA 58.079 36.000 0.00 0.00 39.50 2.10
2985 3053 7.968956 ACTACGATGCCGAATTAGTATCATTAG 59.031 37.037 0.00 7.78 39.50 1.73
2986 3054 7.823665 ACTACGATGCCGAATTAGTATCATTA 58.176 34.615 0.00 0.00 39.50 1.90
2987 3055 6.688578 ACTACGATGCCGAATTAGTATCATT 58.311 36.000 0.00 0.00 39.50 2.57
2988 3056 6.268825 ACTACGATGCCGAATTAGTATCAT 57.731 37.500 0.00 0.00 39.50 2.45
2989 3057 5.700722 ACTACGATGCCGAATTAGTATCA 57.299 39.130 0.00 0.00 39.50 2.15
2990 3058 6.380190 AGAACTACGATGCCGAATTAGTATC 58.620 40.000 0.00 0.00 39.50 2.24
2991 3059 6.328641 AGAACTACGATGCCGAATTAGTAT 57.671 37.500 0.00 0.00 39.50 2.12
2992 3060 5.762825 AGAACTACGATGCCGAATTAGTA 57.237 39.130 0.00 0.00 39.50 1.82
2993 3061 4.650754 AGAACTACGATGCCGAATTAGT 57.349 40.909 0.00 0.00 39.50 2.24
2994 3062 5.041287 TGAAGAACTACGATGCCGAATTAG 58.959 41.667 0.00 0.00 39.50 1.73
2995 3063 5.001237 TGAAGAACTACGATGCCGAATTA 57.999 39.130 0.00 0.00 39.50 1.40
2996 3064 3.857052 TGAAGAACTACGATGCCGAATT 58.143 40.909 0.00 0.00 39.50 2.17
2997 3065 3.520290 TGAAGAACTACGATGCCGAAT 57.480 42.857 0.00 0.00 39.50 3.34
2998 3066 3.520290 ATGAAGAACTACGATGCCGAA 57.480 42.857 0.00 0.00 39.50 4.30
2999 3067 4.642445 TTATGAAGAACTACGATGCCGA 57.358 40.909 0.00 0.00 39.50 5.54
3000 3068 4.745125 ACATTATGAAGAACTACGATGCCG 59.255 41.667 0.00 0.00 42.50 5.69
3001 3069 6.604735 AACATTATGAAGAACTACGATGCC 57.395 37.500 0.00 0.00 0.00 4.40
3002 3070 9.422196 GTAAAACATTATGAAGAACTACGATGC 57.578 33.333 0.00 0.00 0.00 3.91
3014 3082 9.522804 GGTGTCAAGTTTGTAAAACATTATGAA 57.477 29.630 0.00 0.00 0.00 2.57
3015 3083 7.858382 CGGTGTCAAGTTTGTAAAACATTATGA 59.142 33.333 0.00 2.37 0.00 2.15
3016 3084 7.646130 ACGGTGTCAAGTTTGTAAAACATTATG 59.354 33.333 5.72 0.00 0.00 1.90
3017 3085 7.708998 ACGGTGTCAAGTTTGTAAAACATTAT 58.291 30.769 5.72 0.00 0.00 1.28
3018 3086 7.066043 AGACGGTGTCAAGTTTGTAAAACATTA 59.934 33.333 5.72 0.00 34.60 1.90
3019 3087 5.956642 ACGGTGTCAAGTTTGTAAAACATT 58.043 33.333 5.72 0.00 0.00 2.71
3020 3088 5.355910 AGACGGTGTCAAGTTTGTAAAACAT 59.644 36.000 5.72 0.00 34.60 2.71
3021 3089 4.696402 AGACGGTGTCAAGTTTGTAAAACA 59.304 37.500 5.72 0.00 34.60 2.83
3022 3090 5.025826 CAGACGGTGTCAAGTTTGTAAAAC 58.974 41.667 0.00 0.00 34.60 2.43
3023 3091 4.936411 TCAGACGGTGTCAAGTTTGTAAAA 59.064 37.500 0.00 0.00 34.60 1.52
3024 3092 4.330620 GTCAGACGGTGTCAAGTTTGTAAA 59.669 41.667 0.00 0.00 34.60 2.01
3025 3093 3.866910 GTCAGACGGTGTCAAGTTTGTAA 59.133 43.478 0.00 0.00 34.60 2.41
3026 3094 3.131577 AGTCAGACGGTGTCAAGTTTGTA 59.868 43.478 0.00 0.00 34.60 2.41
3027 3095 2.093658 AGTCAGACGGTGTCAAGTTTGT 60.094 45.455 0.00 0.00 34.60 2.83
3028 3096 2.550978 AGTCAGACGGTGTCAAGTTTG 58.449 47.619 0.00 0.00 34.60 2.93
3029 3097 2.981859 AGTCAGACGGTGTCAAGTTT 57.018 45.000 0.00 0.00 34.60 2.66
3030 3098 2.167693 TGAAGTCAGACGGTGTCAAGTT 59.832 45.455 0.00 0.00 34.60 2.66
3031 3099 1.754803 TGAAGTCAGACGGTGTCAAGT 59.245 47.619 0.00 0.00 34.60 3.16
3032 3100 2.509052 TGAAGTCAGACGGTGTCAAG 57.491 50.000 0.00 0.00 34.60 3.02
3033 3101 2.933906 GTTTGAAGTCAGACGGTGTCAA 59.066 45.455 0.00 1.93 34.60 3.18
3034 3102 2.093921 TGTTTGAAGTCAGACGGTGTCA 60.094 45.455 0.00 0.00 34.10 3.58
3035 3103 2.546778 TGTTTGAAGTCAGACGGTGTC 58.453 47.619 0.00 0.00 34.10 3.67
3036 3104 2.684001 TGTTTGAAGTCAGACGGTGT 57.316 45.000 0.00 0.00 34.10 4.16
3037 3105 4.349663 TTTTGTTTGAAGTCAGACGGTG 57.650 40.909 0.00 0.00 34.10 4.94
3038 3106 6.053005 TCTATTTTGTTTGAAGTCAGACGGT 58.947 36.000 0.00 0.00 34.10 4.83
3039 3107 6.539649 TCTATTTTGTTTGAAGTCAGACGG 57.460 37.500 0.00 0.00 34.10 4.79
3040 3108 8.499162 AGAATCTATTTTGTTTGAAGTCAGACG 58.501 33.333 0.00 0.00 34.10 4.18
3057 3125 9.688592 CTTGCAGAAACTTTTGAAGAATCTATT 57.311 29.630 0.00 0.00 0.00 1.73
3058 3126 9.071276 TCTTGCAGAAACTTTTGAAGAATCTAT 57.929 29.630 0.00 0.00 0.00 1.98
3059 3127 8.450578 TCTTGCAGAAACTTTTGAAGAATCTA 57.549 30.769 0.00 0.00 0.00 1.98
3060 3128 7.338800 TCTTGCAGAAACTTTTGAAGAATCT 57.661 32.000 0.00 0.00 0.00 2.40
3061 3129 7.864379 TGATCTTGCAGAAACTTTTGAAGAATC 59.136 33.333 0.00 0.00 0.00 2.52
3062 3130 7.719483 TGATCTTGCAGAAACTTTTGAAGAAT 58.281 30.769 0.00 0.00 0.00 2.40
3063 3131 7.099266 TGATCTTGCAGAAACTTTTGAAGAA 57.901 32.000 0.00 0.00 0.00 2.52
3064 3132 6.698008 TGATCTTGCAGAAACTTTTGAAGA 57.302 33.333 0.00 0.00 0.00 2.87
3065 3133 7.143340 TGATGATCTTGCAGAAACTTTTGAAG 58.857 34.615 0.00 0.00 0.00 3.02
3066 3134 7.041635 TGATGATCTTGCAGAAACTTTTGAA 57.958 32.000 0.00 0.00 0.00 2.69
3067 3135 6.638096 TGATGATCTTGCAGAAACTTTTGA 57.362 33.333 0.00 0.00 0.00 2.69
3068 3136 8.456471 TCTATGATGATCTTGCAGAAACTTTTG 58.544 33.333 0.00 0.00 0.00 2.44
3069 3137 8.571461 TCTATGATGATCTTGCAGAAACTTTT 57.429 30.769 0.00 0.00 0.00 2.27
3070 3138 8.571461 TTCTATGATGATCTTGCAGAAACTTT 57.429 30.769 0.00 0.00 0.00 2.66
3071 3139 7.828223 ACTTCTATGATGATCTTGCAGAAACTT 59.172 33.333 0.00 0.00 0.00 2.66
3072 3140 7.280428 CACTTCTATGATGATCTTGCAGAAACT 59.720 37.037 0.00 0.00 0.00 2.66
3073 3141 7.279536 TCACTTCTATGATGATCTTGCAGAAAC 59.720 37.037 0.00 0.00 0.00 2.78
3074 3142 7.333323 TCACTTCTATGATGATCTTGCAGAAA 58.667 34.615 0.00 0.00 0.00 2.52
3075 3143 6.881570 TCACTTCTATGATGATCTTGCAGAA 58.118 36.000 0.00 0.00 0.00 3.02
3076 3144 6.475596 TCACTTCTATGATGATCTTGCAGA 57.524 37.500 0.00 0.00 0.00 4.26
3099 3167 9.979897 TGCTGCTATTTGGGAAGAAATATATAT 57.020 29.630 0.00 0.00 29.49 0.86
3100 3168 9.453572 CTGCTGCTATTTGGGAAGAAATATATA 57.546 33.333 0.00 0.00 29.49 0.86
3101 3169 7.395489 CCTGCTGCTATTTGGGAAGAAATATAT 59.605 37.037 0.00 0.00 29.49 0.86
3102 3170 6.716628 CCTGCTGCTATTTGGGAAGAAATATA 59.283 38.462 0.00 0.00 29.49 0.86
3103 3171 5.537674 CCTGCTGCTATTTGGGAAGAAATAT 59.462 40.000 0.00 0.00 29.49 1.28
3104 3172 4.889409 CCTGCTGCTATTTGGGAAGAAATA 59.111 41.667 0.00 0.00 0.00 1.40
3105 3173 3.703052 CCTGCTGCTATTTGGGAAGAAAT 59.297 43.478 0.00 0.00 0.00 2.17
3106 3174 3.091545 CCTGCTGCTATTTGGGAAGAAA 58.908 45.455 0.00 0.00 0.00 2.52
3107 3175 2.621407 CCCTGCTGCTATTTGGGAAGAA 60.621 50.000 0.00 0.00 40.23 2.52
3108 3176 1.064463 CCCTGCTGCTATTTGGGAAGA 60.064 52.381 0.00 0.00 40.23 2.87
3109 3177 1.396653 CCCTGCTGCTATTTGGGAAG 58.603 55.000 0.00 0.00 40.23 3.46
3110 3178 0.033208 CCCCTGCTGCTATTTGGGAA 60.033 55.000 0.00 0.00 40.23 3.97
3111 3179 0.918799 TCCCCTGCTGCTATTTGGGA 60.919 55.000 0.00 6.19 40.23 4.37
3112 3180 0.466922 CTCCCCTGCTGCTATTTGGG 60.467 60.000 0.00 3.84 37.68 4.12
3113 3181 1.105759 GCTCCCCTGCTGCTATTTGG 61.106 60.000 0.00 0.00 0.00 3.28
3114 3182 1.105759 GGCTCCCCTGCTGCTATTTG 61.106 60.000 0.00 0.00 0.00 2.32
3115 3183 1.228510 GGCTCCCCTGCTGCTATTT 59.771 57.895 0.00 0.00 0.00 1.40
3116 3184 1.358830 ATGGCTCCCCTGCTGCTATT 61.359 55.000 0.00 0.00 0.00 1.73
3117 3185 1.358830 AATGGCTCCCCTGCTGCTAT 61.359 55.000 0.00 0.00 0.00 2.97
3118 3186 2.002977 AATGGCTCCCCTGCTGCTA 61.003 57.895 0.00 0.00 0.00 3.49
3119 3187 3.345028 AATGGCTCCCCTGCTGCT 61.345 61.111 0.00 0.00 0.00 4.24
3120 3188 2.923634 ATCAATGGCTCCCCTGCTGC 62.924 60.000 0.00 0.00 0.00 5.25
3121 3189 0.822532 GATCAATGGCTCCCCTGCTG 60.823 60.000 0.00 0.00 0.00 4.41
3122 3190 0.992431 AGATCAATGGCTCCCCTGCT 60.992 55.000 0.00 0.00 0.00 4.24
3123 3191 0.106318 AAGATCAATGGCTCCCCTGC 60.106 55.000 0.00 0.00 0.00 4.85
3124 3192 3.330110 AGATAAGATCAATGGCTCCCCTG 59.670 47.826 0.00 0.00 0.00 4.45
3125 3193 3.586618 GAGATAAGATCAATGGCTCCCCT 59.413 47.826 0.00 0.00 0.00 4.79
3126 3194 3.328931 TGAGATAAGATCAATGGCTCCCC 59.671 47.826 0.00 0.00 0.00 4.81
3127 3195 4.630644 TGAGATAAGATCAATGGCTCCC 57.369 45.455 0.00 0.00 0.00 4.30
3128 3196 4.942483 CCATGAGATAAGATCAATGGCTCC 59.058 45.833 0.00 0.00 38.27 4.70
3129 3197 5.558818 ACCATGAGATAAGATCAATGGCTC 58.441 41.667 15.72 0.00 43.83 4.70
3130 3198 5.579753 ACCATGAGATAAGATCAATGGCT 57.420 39.130 15.72 6.10 43.83 4.75
3131 3199 6.370994 CACTACCATGAGATAAGATCAATGGC 59.629 42.308 15.72 0.00 43.83 4.40
3132 3200 7.448420 ACACTACCATGAGATAAGATCAATGG 58.552 38.462 14.81 14.81 44.73 3.16
3133 3201 8.899427 AACACTACCATGAGATAAGATCAATG 57.101 34.615 0.00 0.00 0.00 2.82
3134 3202 8.708378 TGAACACTACCATGAGATAAGATCAAT 58.292 33.333 0.00 0.00 0.00 2.57
3135 3203 8.078060 TGAACACTACCATGAGATAAGATCAA 57.922 34.615 0.00 0.00 0.00 2.57
3136 3204 7.660030 TGAACACTACCATGAGATAAGATCA 57.340 36.000 0.00 0.00 0.00 2.92
3137 3205 9.553064 AAATGAACACTACCATGAGATAAGATC 57.447 33.333 0.00 0.00 0.00 2.75
3138 3206 9.334947 CAAATGAACACTACCATGAGATAAGAT 57.665 33.333 0.00 0.00 0.00 2.40
3139 3207 7.280876 GCAAATGAACACTACCATGAGATAAGA 59.719 37.037 0.00 0.00 0.00 2.10
3140 3208 7.066163 TGCAAATGAACACTACCATGAGATAAG 59.934 37.037 0.00 0.00 0.00 1.73
3141 3209 6.883756 TGCAAATGAACACTACCATGAGATAA 59.116 34.615 0.00 0.00 0.00 1.75
3142 3210 6.316140 GTGCAAATGAACACTACCATGAGATA 59.684 38.462 0.00 0.00 33.92 1.98
3143 3211 5.124457 GTGCAAATGAACACTACCATGAGAT 59.876 40.000 0.00 0.00 33.92 2.75
3144 3212 4.455533 GTGCAAATGAACACTACCATGAGA 59.544 41.667 0.00 0.00 33.92 3.27
3145 3213 4.216042 TGTGCAAATGAACACTACCATGAG 59.784 41.667 0.00 0.00 37.68 2.90
3146 3214 4.140536 TGTGCAAATGAACACTACCATGA 58.859 39.130 0.00 0.00 37.68 3.07
3147 3215 4.478699 CTGTGCAAATGAACACTACCATG 58.521 43.478 0.00 0.00 37.68 3.66
3148 3216 3.057315 GCTGTGCAAATGAACACTACCAT 60.057 43.478 0.00 0.00 37.68 3.55
3149 3217 2.293122 GCTGTGCAAATGAACACTACCA 59.707 45.455 0.00 0.00 37.68 3.25
3150 3218 2.554032 AGCTGTGCAAATGAACACTACC 59.446 45.455 0.00 0.00 37.68 3.18
3151 3219 3.250762 TCAGCTGTGCAAATGAACACTAC 59.749 43.478 14.67 0.00 37.68 2.73
3152 3220 3.475575 TCAGCTGTGCAAATGAACACTA 58.524 40.909 14.67 0.00 37.68 2.74
3153 3221 2.300433 TCAGCTGTGCAAATGAACACT 58.700 42.857 14.67 0.00 37.68 3.55
3154 3222 2.780065 TCAGCTGTGCAAATGAACAC 57.220 45.000 14.67 0.00 37.31 3.32
3155 3223 2.029739 CCATCAGCTGTGCAAATGAACA 60.030 45.455 14.67 0.00 31.56 3.18
3156 3224 2.229543 TCCATCAGCTGTGCAAATGAAC 59.770 45.455 14.67 0.00 0.00 3.18
3157 3225 2.516906 TCCATCAGCTGTGCAAATGAA 58.483 42.857 14.67 0.00 0.00 2.57
3158 3226 2.203470 TCCATCAGCTGTGCAAATGA 57.797 45.000 14.67 1.53 0.00 2.57
3159 3227 3.186909 CAATCCATCAGCTGTGCAAATG 58.813 45.455 14.67 9.41 0.00 2.32
3160 3228 2.167693 CCAATCCATCAGCTGTGCAAAT 59.832 45.455 14.67 0.00 0.00 2.32
3161 3229 1.546923 CCAATCCATCAGCTGTGCAAA 59.453 47.619 14.67 0.00 0.00 3.68
3162 3230 1.179152 CCAATCCATCAGCTGTGCAA 58.821 50.000 14.67 0.00 0.00 4.08
3163 3231 1.317431 GCCAATCCATCAGCTGTGCA 61.317 55.000 14.67 0.00 0.00 4.57
3164 3232 1.317431 TGCCAATCCATCAGCTGTGC 61.317 55.000 14.67 5.60 0.00 4.57
3165 3233 0.454600 GTGCCAATCCATCAGCTGTG 59.545 55.000 14.67 11.14 0.00 3.66
3166 3234 0.682209 GGTGCCAATCCATCAGCTGT 60.682 55.000 14.67 0.00 0.00 4.40
3167 3235 0.681887 TGGTGCCAATCCATCAGCTG 60.682 55.000 7.63 7.63 0.00 4.24
3168 3236 0.395311 CTGGTGCCAATCCATCAGCT 60.395 55.000 0.00 0.00 37.17 4.24
3169 3237 0.682209 ACTGGTGCCAATCCATCAGC 60.682 55.000 2.56 0.00 45.65 4.26
3170 3238 1.100510 CACTGGTGCCAATCCATCAG 58.899 55.000 1.17 1.17 46.81 2.90
3171 3239 0.697658 TCACTGGTGCCAATCCATCA 59.302 50.000 0.00 0.00 34.26 3.07
3172 3240 1.747355 CTTCACTGGTGCCAATCCATC 59.253 52.381 0.00 0.00 34.26 3.51
3173 3241 1.355381 TCTTCACTGGTGCCAATCCAT 59.645 47.619 0.00 0.00 34.26 3.41
3174 3242 0.770499 TCTTCACTGGTGCCAATCCA 59.230 50.000 0.00 0.00 0.00 3.41
3175 3243 1.909700 TTCTTCACTGGTGCCAATCC 58.090 50.000 0.00 0.00 0.00 3.01
3176 3244 4.702131 AGTAATTCTTCACTGGTGCCAATC 59.298 41.667 0.00 0.00 0.00 2.67
3177 3245 4.666512 AGTAATTCTTCACTGGTGCCAAT 58.333 39.130 0.00 0.00 0.00 3.16
3178 3246 4.072131 GAGTAATTCTTCACTGGTGCCAA 58.928 43.478 0.00 0.00 0.00 4.52
3179 3247 3.559171 GGAGTAATTCTTCACTGGTGCCA 60.559 47.826 0.00 0.00 0.00 4.92
3180 3248 3.010420 GGAGTAATTCTTCACTGGTGCC 58.990 50.000 0.00 0.00 0.00 5.01
3181 3249 3.437049 GTGGAGTAATTCTTCACTGGTGC 59.563 47.826 8.34 0.00 46.30 5.01
3187 3255 6.294363 CGTAAAACGTGGAGTAATTCTTCAC 58.706 40.000 0.00 6.36 46.33 3.18
3188 3256 6.456447 CGTAAAACGTGGAGTAATTCTTCA 57.544 37.500 0.00 0.00 36.74 3.02
3219 3287 2.578021 ACTGAATATGTTGACTGGCCCT 59.422 45.455 0.00 0.00 0.00 5.19
3227 3295 6.406370 CCACTGGTCTAACTGAATATGTTGA 58.594 40.000 0.00 0.00 0.00 3.18
3228 3296 5.065218 GCCACTGGTCTAACTGAATATGTTG 59.935 44.000 0.00 0.00 0.00 3.33
3229 3297 5.186198 GCCACTGGTCTAACTGAATATGTT 58.814 41.667 0.00 0.00 0.00 2.71
3230 3298 4.680708 CGCCACTGGTCTAACTGAATATGT 60.681 45.833 0.00 0.00 0.00 2.29
3231 3299 3.804325 CGCCACTGGTCTAACTGAATATG 59.196 47.826 0.00 0.00 0.00 1.78
3232 3300 3.181465 CCGCCACTGGTCTAACTGAATAT 60.181 47.826 0.00 0.00 0.00 1.28
3233 3301 2.167693 CCGCCACTGGTCTAACTGAATA 59.832 50.000 0.00 0.00 0.00 1.75
3234 3302 1.066143 CCGCCACTGGTCTAACTGAAT 60.066 52.381 0.00 0.00 0.00 2.57
3235 3303 0.320374 CCGCCACTGGTCTAACTGAA 59.680 55.000 0.00 0.00 0.00 3.02
3261 3329 2.029073 ACCGTGCACGTCTTCCTG 59.971 61.111 34.81 21.05 37.74 3.86
3262 3330 2.029073 CACCGTGCACGTCTTCCT 59.971 61.111 34.81 9.41 37.74 3.36
3263 3331 3.712881 GCACCGTGCACGTCTTCC 61.713 66.667 34.81 16.02 44.26 3.46
3285 3353 3.435105 TTTTCTGTGGATGTTGTGTGC 57.565 42.857 0.00 0.00 0.00 4.57
3307 3375 7.734942 TGATGTTTTCCTTTTATCAGCCTTTT 58.265 30.769 0.00 0.00 0.00 2.27
3308 3376 7.301868 TGATGTTTTCCTTTTATCAGCCTTT 57.698 32.000 0.00 0.00 0.00 3.11
3309 3377 6.916360 TGATGTTTTCCTTTTATCAGCCTT 57.084 33.333 0.00 0.00 0.00 4.35
3323 3391 6.865205 CCACTCCATTTTCTCTTGATGTTTTC 59.135 38.462 0.00 0.00 0.00 2.29
3325 3393 5.835280 ACCACTCCATTTTCTCTTGATGTTT 59.165 36.000 0.00 0.00 0.00 2.83
3328 3396 5.105997 GGAACCACTCCATTTTCTCTTGATG 60.106 44.000 0.00 0.00 44.67 3.07
3329 3397 5.012893 GGAACCACTCCATTTTCTCTTGAT 58.987 41.667 0.00 0.00 44.67 2.57
3330 3398 4.398319 GGAACCACTCCATTTTCTCTTGA 58.602 43.478 0.00 0.00 44.67 3.02
3331 3399 4.773323 GGAACCACTCCATTTTCTCTTG 57.227 45.455 0.00 0.00 44.67 3.02
3377 3446 1.188219 AAGGAGCAGTTCGAGAGGCA 61.188 55.000 6.97 0.00 0.00 4.75
3416 3485 1.352156 GATCGACAACAGACGTGGGC 61.352 60.000 0.00 0.00 0.00 5.36
3417 3486 1.071019 CGATCGACAACAGACGTGGG 61.071 60.000 10.26 0.00 0.00 4.61
3418 3487 0.109919 TCGATCGACAACAGACGTGG 60.110 55.000 15.15 0.00 0.00 4.94
3419 3488 1.251355 CTCGATCGACAACAGACGTG 58.749 55.000 15.15 0.00 0.00 4.49
3420 3489 0.454620 GCTCGATCGACAACAGACGT 60.455 55.000 15.15 0.00 0.00 4.34
3421 3490 1.134530 GGCTCGATCGACAACAGACG 61.135 60.000 15.15 2.84 0.00 4.18
3422 3491 0.171455 AGGCTCGATCGACAACAGAC 59.829 55.000 15.15 6.36 0.00 3.51
3423 3492 0.171231 CAGGCTCGATCGACAACAGA 59.829 55.000 15.15 0.00 0.00 3.41
3424 3493 2.658538 CAGGCTCGATCGACAACAG 58.341 57.895 15.15 5.25 0.00 3.16
3425 3494 4.889427 CAGGCTCGATCGACAACA 57.111 55.556 15.15 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.