Multiple sequence alignment - TraesCS4B01G049900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G049900 chr4B 100.000 3392 0 0 1 3392 38627039 38623648 0.000000e+00 6264.0
1 TraesCS4B01G049900 chr4D 93.526 1838 59 28 1602 3392 26206269 26204445 0.000000e+00 2680.0
2 TraesCS4B01G049900 chr4D 92.385 499 20 9 692 1184 26207163 26206677 0.000000e+00 695.0
3 TraesCS4B01G049900 chr4D 90.083 121 8 1 1315 1431 26206583 26206463 1.630000e-33 154.0
4 TraesCS4B01G049900 chr4D 91.429 105 5 3 1475 1578 26206461 26206360 1.270000e-29 141.0
5 TraesCS4B01G049900 chr4A 89.659 1025 47 27 1449 2421 577110134 577109117 0.000000e+00 1251.0
6 TraesCS4B01G049900 chr4A 91.096 584 26 13 623 1184 577110935 577110356 0.000000e+00 767.0
7 TraesCS4B01G049900 chr4A 86.364 264 17 9 2414 2662 577109085 577108826 1.550000e-68 270.0
8 TraesCS4B01G049900 chr4A 92.105 152 8 1 1284 1431 577110269 577110118 9.540000e-51 211.0
9 TraesCS4B01G049900 chr3D 94.362 337 15 4 3056 3391 506014372 506014705 6.490000e-142 514.0
10 TraesCS4B01G049900 chr3D 87.654 162 19 1 2830 2990 31577237 31577076 1.610000e-43 187.0
11 TraesCS4B01G049900 chr3A 88.889 162 17 1 2830 2990 600921015 600920854 7.420000e-47 198.0
12 TraesCS4B01G049900 chr1D 88.889 162 17 1 2830 2990 155961834 155961673 7.420000e-47 198.0
13 TraesCS4B01G049900 chr5A 88.820 161 17 1 2830 2989 414775662 414775822 2.670000e-46 196.0
14 TraesCS4B01G049900 chr2A 78.931 318 44 16 3056 3355 141276767 141277079 9.600000e-46 195.0
15 TraesCS4B01G049900 chr2A 82.635 167 27 2 3056 3220 353473500 353473666 2.730000e-31 147.0
16 TraesCS4B01G049900 chr1A 88.344 163 16 3 2830 2990 268939766 268939605 3.450000e-45 193.0
17 TraesCS4B01G049900 chr6D 88.199 161 18 1 2830 2989 145462623 145462463 1.240000e-44 191.0
18 TraesCS4B01G049900 chr6D 91.111 45 4 0 3273 3317 218391484 218391440 1.020000e-05 62.1
19 TraesCS4B01G049900 chr7D 87.654 162 18 2 2830 2989 83345011 83344850 1.610000e-43 187.0
20 TraesCS4B01G049900 chr6A 87.273 165 20 1 2830 2993 66996753 66996589 1.610000e-43 187.0
21 TraesCS4B01G049900 chr6A 91.111 45 2 2 3273 3317 297639038 297638996 3.660000e-05 60.2
22 TraesCS4B01G049900 chr2D 78.344 314 46 13 3056 3355 133263690 133263995 2.080000e-42 183.0
23 TraesCS4B01G049900 chr2D 83.832 167 25 2 3056 3220 275944484 275944318 1.260000e-34 158.0
24 TraesCS4B01G049900 chr2D 88.732 71 8 0 3281 3351 209522803 209522733 1.680000e-13 87.9
25 TraesCS4B01G049900 chr2B 82.036 167 28 2 3056 3220 312197447 312197613 1.270000e-29 141.0
26 TraesCS4B01G049900 chr2B 82.927 123 14 7 3094 3211 798144756 798144876 1.660000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G049900 chr4B 38623648 38627039 3391 True 6264.00 6264 100.00000 1 3392 1 chr4B.!!$R1 3391
1 TraesCS4B01G049900 chr4D 26204445 26207163 2718 True 917.50 2680 91.85575 692 3392 4 chr4D.!!$R1 2700
2 TraesCS4B01G049900 chr4A 577108826 577110935 2109 True 624.75 1251 89.80600 623 2662 4 chr4A.!!$R1 2039

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
675 676 0.109272 AGTGCGGGCGATATATGTCG 60.109 55.0 16.62 16.62 44.14 4.35 F
677 678 0.109458 TGCGGGCGATATATGTCGTC 60.109 55.0 20.89 19.07 44.95 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1677 1818 0.030369 CCTGCTACGTGTACCGATCC 59.970 60.0 0.0 0.2 40.7 3.36 R
2504 2707 0.174617 CGCAAACCACCCAAACTTGT 59.825 50.0 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 6.720012 TTTTCCTTTTCTTTGTGTTGCTTC 57.280 33.333 0.00 0.00 0.00 3.86
73 74 5.398603 TTCCTTTTCTTTGTGTTGCTTCA 57.601 34.783 0.00 0.00 0.00 3.02
74 75 4.997565 TCCTTTTCTTTGTGTTGCTTCAG 58.002 39.130 0.00 0.00 0.00 3.02
75 76 4.462483 TCCTTTTCTTTGTGTTGCTTCAGT 59.538 37.500 0.00 0.00 0.00 3.41
76 77 5.047377 TCCTTTTCTTTGTGTTGCTTCAGTT 60.047 36.000 0.00 0.00 0.00 3.16
77 78 5.639082 CCTTTTCTTTGTGTTGCTTCAGTTT 59.361 36.000 0.00 0.00 0.00 2.66
78 79 6.147656 CCTTTTCTTTGTGTTGCTTCAGTTTT 59.852 34.615 0.00 0.00 0.00 2.43
79 80 6.704512 TTTCTTTGTGTTGCTTCAGTTTTC 57.295 33.333 0.00 0.00 0.00 2.29
80 81 5.643379 TCTTTGTGTTGCTTCAGTTTTCT 57.357 34.783 0.00 0.00 0.00 2.52
81 82 6.024552 TCTTTGTGTTGCTTCAGTTTTCTT 57.975 33.333 0.00 0.00 0.00 2.52
82 83 6.454795 TCTTTGTGTTGCTTCAGTTTTCTTT 58.545 32.000 0.00 0.00 0.00 2.52
83 84 6.365789 TCTTTGTGTTGCTTCAGTTTTCTTTG 59.634 34.615 0.00 0.00 0.00 2.77
84 85 5.132897 TGTGTTGCTTCAGTTTTCTTTGT 57.867 34.783 0.00 0.00 0.00 2.83
85 86 5.537188 TGTGTTGCTTCAGTTTTCTTTGTT 58.463 33.333 0.00 0.00 0.00 2.83
86 87 5.988561 TGTGTTGCTTCAGTTTTCTTTGTTT 59.011 32.000 0.00 0.00 0.00 2.83
87 88 6.145371 TGTGTTGCTTCAGTTTTCTTTGTTTC 59.855 34.615 0.00 0.00 0.00 2.78
88 89 6.366061 GTGTTGCTTCAGTTTTCTTTGTTTCT 59.634 34.615 0.00 0.00 0.00 2.52
89 90 6.928492 TGTTGCTTCAGTTTTCTTTGTTTCTT 59.072 30.769 0.00 0.00 0.00 2.52
90 91 7.440856 TGTTGCTTCAGTTTTCTTTGTTTCTTT 59.559 29.630 0.00 0.00 0.00 2.52
91 92 7.581011 TGCTTCAGTTTTCTTTGTTTCTTTC 57.419 32.000 0.00 0.00 0.00 2.62
92 93 7.378181 TGCTTCAGTTTTCTTTGTTTCTTTCT 58.622 30.769 0.00 0.00 0.00 2.52
93 94 7.872483 TGCTTCAGTTTTCTTTGTTTCTTTCTT 59.128 29.630 0.00 0.00 0.00 2.52
94 95 8.164790 GCTTCAGTTTTCTTTGTTTCTTTCTTG 58.835 33.333 0.00 0.00 0.00 3.02
95 96 8.532977 TTCAGTTTTCTTTGTTTCTTTCTTGG 57.467 30.769 0.00 0.00 0.00 3.61
96 97 7.666623 TCAGTTTTCTTTGTTTCTTTCTTGGT 58.333 30.769 0.00 0.00 0.00 3.67
97 98 8.147704 TCAGTTTTCTTTGTTTCTTTCTTGGTT 58.852 29.630 0.00 0.00 0.00 3.67
98 99 8.773645 CAGTTTTCTTTGTTTCTTTCTTGGTTT 58.226 29.630 0.00 0.00 0.00 3.27
99 100 8.988934 AGTTTTCTTTGTTTCTTTCTTGGTTTC 58.011 29.630 0.00 0.00 0.00 2.78
100 101 8.769891 GTTTTCTTTGTTTCTTTCTTGGTTTCA 58.230 29.630 0.00 0.00 0.00 2.69
101 102 8.894768 TTTCTTTGTTTCTTTCTTGGTTTCAA 57.105 26.923 0.00 0.00 0.00 2.69
102 103 9.500785 TTTCTTTGTTTCTTTCTTGGTTTCAAT 57.499 25.926 0.00 0.00 31.75 2.57
103 104 8.477984 TCTTTGTTTCTTTCTTGGTTTCAATG 57.522 30.769 0.00 0.00 31.75 2.82
104 105 8.310382 TCTTTGTTTCTTTCTTGGTTTCAATGA 58.690 29.630 0.00 0.00 31.75 2.57
105 106 8.839310 TTTGTTTCTTTCTTGGTTTCAATGAA 57.161 26.923 0.00 0.00 31.75 2.57
106 107 9.447157 TTTGTTTCTTTCTTGGTTTCAATGAAT 57.553 25.926 0.00 0.00 31.75 2.57
107 108 9.447157 TTGTTTCTTTCTTGGTTTCAATGAATT 57.553 25.926 0.00 0.00 31.75 2.17
108 109 9.447157 TGTTTCTTTCTTGGTTTCAATGAATTT 57.553 25.926 0.00 0.00 31.75 1.82
144 145 6.582437 TTTGTTTCTTCATTTTTCTTCGGC 57.418 33.333 0.00 0.00 0.00 5.54
145 146 5.514274 TGTTTCTTCATTTTTCTTCGGCT 57.486 34.783 0.00 0.00 0.00 5.52
146 147 5.901552 TGTTTCTTCATTTTTCTTCGGCTT 58.098 33.333 0.00 0.00 0.00 4.35
147 148 6.337356 TGTTTCTTCATTTTTCTTCGGCTTT 58.663 32.000 0.00 0.00 0.00 3.51
148 149 6.255453 TGTTTCTTCATTTTTCTTCGGCTTTG 59.745 34.615 0.00 0.00 0.00 2.77
149 150 5.514274 TCTTCATTTTTCTTCGGCTTTGT 57.486 34.783 0.00 0.00 0.00 2.83
150 151 5.901552 TCTTCATTTTTCTTCGGCTTTGTT 58.098 33.333 0.00 0.00 0.00 2.83
151 152 6.337356 TCTTCATTTTTCTTCGGCTTTGTTT 58.663 32.000 0.00 0.00 0.00 2.83
152 153 5.964887 TCATTTTTCTTCGGCTTTGTTTG 57.035 34.783 0.00 0.00 0.00 2.93
153 154 5.415221 TCATTTTTCTTCGGCTTTGTTTGT 58.585 33.333 0.00 0.00 0.00 2.83
154 155 5.872070 TCATTTTTCTTCGGCTTTGTTTGTT 59.128 32.000 0.00 0.00 0.00 2.83
155 156 6.370166 TCATTTTTCTTCGGCTTTGTTTGTTT 59.630 30.769 0.00 0.00 0.00 2.83
156 157 7.545965 TCATTTTTCTTCGGCTTTGTTTGTTTA 59.454 29.630 0.00 0.00 0.00 2.01
157 158 7.835634 TTTTTCTTCGGCTTTGTTTGTTTAT 57.164 28.000 0.00 0.00 0.00 1.40
158 159 6.820470 TTTCTTCGGCTTTGTTTGTTTATG 57.180 33.333 0.00 0.00 0.00 1.90
159 160 5.508200 TCTTCGGCTTTGTTTGTTTATGT 57.492 34.783 0.00 0.00 0.00 2.29
160 161 5.516090 TCTTCGGCTTTGTTTGTTTATGTC 58.484 37.500 0.00 0.00 0.00 3.06
161 162 5.298276 TCTTCGGCTTTGTTTGTTTATGTCT 59.702 36.000 0.00 0.00 0.00 3.41
162 163 5.103290 TCGGCTTTGTTTGTTTATGTCTC 57.897 39.130 0.00 0.00 0.00 3.36
163 164 4.819630 TCGGCTTTGTTTGTTTATGTCTCT 59.180 37.500 0.00 0.00 0.00 3.10
164 165 5.298276 TCGGCTTTGTTTGTTTATGTCTCTT 59.702 36.000 0.00 0.00 0.00 2.85
165 166 5.977129 CGGCTTTGTTTGTTTATGTCTCTTT 59.023 36.000 0.00 0.00 0.00 2.52
166 167 6.475402 CGGCTTTGTTTGTTTATGTCTCTTTT 59.525 34.615 0.00 0.00 0.00 2.27
167 168 7.010091 CGGCTTTGTTTGTTTATGTCTCTTTTT 59.990 33.333 0.00 0.00 0.00 1.94
168 169 8.328146 GGCTTTGTTTGTTTATGTCTCTTTTTC 58.672 33.333 0.00 0.00 0.00 2.29
169 170 8.868916 GCTTTGTTTGTTTATGTCTCTTTTTCA 58.131 29.630 0.00 0.00 0.00 2.69
214 215 9.621629 TTCCTCAAGTTTCATAGTTTTTCTACA 57.378 29.630 0.00 0.00 0.00 2.74
215 216 9.052759 TCCTCAAGTTTCATAGTTTTTCTACAC 57.947 33.333 0.00 0.00 0.00 2.90
216 217 8.836413 CCTCAAGTTTCATAGTTTTTCTACACA 58.164 33.333 0.00 0.00 0.00 3.72
217 218 9.651718 CTCAAGTTTCATAGTTTTTCTACACAC 57.348 33.333 0.00 0.00 0.00 3.82
218 219 9.168451 TCAAGTTTCATAGTTTTTCTACACACA 57.832 29.630 0.00 0.00 0.00 3.72
219 220 9.950680 CAAGTTTCATAGTTTTTCTACACACAT 57.049 29.630 0.00 0.00 0.00 3.21
256 257 8.876275 TCTAGTACATTTTTCTAACACACGTT 57.124 30.769 0.00 0.00 39.24 3.99
257 258 9.964303 TCTAGTACATTTTTCTAACACACGTTA 57.036 29.630 0.00 0.00 36.52 3.18
260 261 8.881743 AGTACATTTTTCTAACACACGTTAACA 58.118 29.630 6.39 0.00 37.16 2.41
261 262 9.654417 GTACATTTTTCTAACACACGTTAACAT 57.346 29.630 6.39 0.00 37.16 2.71
263 264 9.575783 ACATTTTTCTAACACACGTTAACATTT 57.424 25.926 6.39 0.00 37.16 2.32
267 268 9.622004 TTTTCTAACACACGTTAACATTTTTCA 57.378 25.926 6.39 0.00 37.16 2.69
268 269 9.622004 TTTCTAACACACGTTAACATTTTTCAA 57.378 25.926 6.39 0.00 37.16 2.69
269 270 9.622004 TTCTAACACACGTTAACATTTTTCAAA 57.378 25.926 6.39 0.00 37.16 2.69
270 271 9.790389 TCTAACACACGTTAACATTTTTCAAAT 57.210 25.926 6.39 0.00 37.16 2.32
300 301 9.705290 AATTTAACATTTTGTGGATACTTGGTC 57.295 29.630 0.00 0.00 37.61 4.02
301 302 7.825331 TTAACATTTTGTGGATACTTGGTCA 57.175 32.000 0.00 0.00 37.61 4.02
302 303 6.723298 AACATTTTGTGGATACTTGGTCAA 57.277 33.333 0.00 0.00 37.61 3.18
303 304 6.916360 ACATTTTGTGGATACTTGGTCAAT 57.084 33.333 0.00 0.00 37.61 2.57
304 305 8.415950 AACATTTTGTGGATACTTGGTCAATA 57.584 30.769 0.00 0.00 37.61 1.90
305 306 8.593945 ACATTTTGTGGATACTTGGTCAATAT 57.406 30.769 0.00 0.00 37.61 1.28
306 307 9.034800 ACATTTTGTGGATACTTGGTCAATATT 57.965 29.630 0.00 0.00 37.61 1.28
307 308 9.874205 CATTTTGTGGATACTTGGTCAATATTT 57.126 29.630 0.00 0.00 37.61 1.40
335 336 9.762381 TTCTATACACAATTTTGGGATTTACCT 57.238 29.630 0.00 0.00 38.98 3.08
340 341 8.887264 ACACAATTTTGGGATTTACCTATACA 57.113 30.769 0.00 0.00 38.98 2.29
341 342 9.487442 ACACAATTTTGGGATTTACCTATACAT 57.513 29.630 0.00 0.00 38.98 2.29
342 343 9.965824 CACAATTTTGGGATTTACCTATACATC 57.034 33.333 0.00 0.00 38.98 3.06
343 344 9.936329 ACAATTTTGGGATTTACCTATACATCT 57.064 29.630 0.00 0.00 38.98 2.90
388 389 8.896320 TGTTTACTACATAGTCAACATGTTGT 57.104 30.769 31.99 19.78 42.30 3.32
389 390 9.332502 TGTTTACTACATAGTCAACATGTTGTT 57.667 29.630 31.99 24.23 42.30 2.83
390 391 9.807386 GTTTACTACATAGTCAACATGTTGTTC 57.193 33.333 31.99 25.43 40.88 3.18
391 392 9.549078 TTTACTACATAGTCAACATGTTGTTCA 57.451 29.630 31.99 20.28 40.88 3.18
392 393 9.549078 TTACTACATAGTCAACATGTTGTTCAA 57.451 29.630 31.99 19.04 40.88 2.69
393 394 8.621532 ACTACATAGTCAACATGTTGTTCAAT 57.378 30.769 31.99 18.32 38.77 2.57
394 395 9.066892 ACTACATAGTCAACATGTTGTTCAATT 57.933 29.630 31.99 18.55 38.77 2.32
395 396 9.897744 CTACATAGTCAACATGTTGTTCAATTT 57.102 29.630 31.99 18.44 38.77 1.82
397 398 9.598517 ACATAGTCAACATGTTGTTCAATTTTT 57.401 25.926 31.99 14.89 38.77 1.94
452 453 9.768662 AAGCTTGATTAAATTTTCACATGTTCT 57.231 25.926 0.00 0.00 0.00 3.01
469 470 9.345517 CACATGTTCTATGTTGAGTTATTTTGG 57.654 33.333 0.00 0.00 0.00 3.28
470 471 9.077885 ACATGTTCTATGTTGAGTTATTTTGGT 57.922 29.630 0.00 0.00 0.00 3.67
565 566 9.883142 ATAGACAAATGAAAGAAAAACCAAACA 57.117 25.926 0.00 0.00 0.00 2.83
566 567 8.614469 AGACAAATGAAAGAAAAACCAAACAA 57.386 26.923 0.00 0.00 0.00 2.83
567 568 9.230122 AGACAAATGAAAGAAAAACCAAACAAT 57.770 25.926 0.00 0.00 0.00 2.71
573 574 7.680062 TGAAAGAAAAACCAAACAATAAAGCG 58.320 30.769 0.00 0.00 0.00 4.68
574 575 7.545965 TGAAAGAAAAACCAAACAATAAAGCGA 59.454 29.630 0.00 0.00 0.00 4.93
575 576 6.822073 AGAAAAACCAAACAATAAAGCGAC 57.178 33.333 0.00 0.00 0.00 5.19
576 577 5.457473 AGAAAAACCAAACAATAAAGCGACG 59.543 36.000 0.00 0.00 0.00 5.12
577 578 2.981400 ACCAAACAATAAAGCGACGG 57.019 45.000 0.00 0.00 0.00 4.79
578 579 2.223745 ACCAAACAATAAAGCGACGGT 58.776 42.857 0.00 0.00 0.00 4.83
579 580 2.619646 ACCAAACAATAAAGCGACGGTT 59.380 40.909 6.44 6.44 0.00 4.44
580 581 3.231160 CCAAACAATAAAGCGACGGTTC 58.769 45.455 13.33 0.00 0.00 3.62
581 582 3.231160 CAAACAATAAAGCGACGGTTCC 58.769 45.455 13.33 0.00 0.00 3.62
582 583 1.445871 ACAATAAAGCGACGGTTCCC 58.554 50.000 13.33 0.00 0.00 3.97
583 584 1.002773 ACAATAAAGCGACGGTTCCCT 59.997 47.619 13.33 0.00 0.00 4.20
584 585 1.664151 CAATAAAGCGACGGTTCCCTC 59.336 52.381 13.33 0.00 0.00 4.30
585 586 1.192428 ATAAAGCGACGGTTCCCTCT 58.808 50.000 13.33 0.00 0.00 3.69
586 587 0.245539 TAAAGCGACGGTTCCCTCTG 59.754 55.000 13.33 0.00 0.00 3.35
587 588 1.755393 AAAGCGACGGTTCCCTCTGT 61.755 55.000 13.33 0.00 0.00 3.41
588 589 1.755393 AAGCGACGGTTCCCTCTGTT 61.755 55.000 6.44 0.00 0.00 3.16
589 590 1.301479 GCGACGGTTCCCTCTGTTT 60.301 57.895 0.00 0.00 0.00 2.83
590 591 1.289800 GCGACGGTTCCCTCTGTTTC 61.290 60.000 0.00 0.00 0.00 2.78
591 592 1.007336 CGACGGTTCCCTCTGTTTCG 61.007 60.000 0.00 0.00 0.00 3.46
592 593 1.289800 GACGGTTCCCTCTGTTTCGC 61.290 60.000 0.00 0.00 0.00 4.70
593 594 1.301401 CGGTTCCCTCTGTTTCGCA 60.301 57.895 0.00 0.00 0.00 5.10
594 595 0.673644 CGGTTCCCTCTGTTTCGCAT 60.674 55.000 0.00 0.00 0.00 4.73
595 596 0.804989 GGTTCCCTCTGTTTCGCATG 59.195 55.000 0.00 0.00 0.00 4.06
596 597 1.610624 GGTTCCCTCTGTTTCGCATGA 60.611 52.381 0.00 0.00 0.00 3.07
597 598 2.151202 GTTCCCTCTGTTTCGCATGAA 58.849 47.619 0.00 0.00 0.00 2.57
598 599 2.099141 TCCCTCTGTTTCGCATGAAG 57.901 50.000 0.00 0.00 35.06 3.02
599 600 0.449388 CCCTCTGTTTCGCATGAAGC 59.551 55.000 0.00 0.00 35.06 3.86
610 611 1.506493 GCATGAAGCGAGACATAGGG 58.494 55.000 0.00 0.00 0.00 3.53
611 612 1.875576 GCATGAAGCGAGACATAGGGG 60.876 57.143 0.00 0.00 0.00 4.79
612 613 0.394565 ATGAAGCGAGACATAGGGGC 59.605 55.000 0.00 0.00 0.00 5.80
613 614 1.300233 GAAGCGAGACATAGGGGCG 60.300 63.158 0.00 0.00 0.00 6.13
615 616 4.971125 GCGAGACATAGGGGCGCC 62.971 72.222 21.18 21.18 41.65 6.53
616 617 3.227276 CGAGACATAGGGGCGCCT 61.227 66.667 28.56 27.11 0.00 5.52
617 618 2.737830 GAGACATAGGGGCGCCTC 59.262 66.667 27.81 25.59 0.00 4.70
618 619 3.214250 GAGACATAGGGGCGCCTCG 62.214 68.421 27.81 20.52 0.00 4.63
631 632 2.727647 CCTCGCGCGCTAGCTTAG 60.728 66.667 30.48 15.44 42.32 2.18
640 641 1.223763 GCTAGCTTAGGGCCCGTTT 59.776 57.895 18.44 0.39 43.05 3.60
641 642 0.466963 GCTAGCTTAGGGCCCGTTTA 59.533 55.000 18.44 0.00 43.05 2.01
654 655 0.935196 CCGTTTAGATGCTTACGGCC 59.065 55.000 0.00 0.00 45.75 6.13
655 656 0.575390 CGTTTAGATGCTTACGGCCG 59.425 55.000 26.86 26.86 40.92 6.13
675 676 0.109272 AGTGCGGGCGATATATGTCG 60.109 55.000 16.62 16.62 44.14 4.35
676 677 0.388134 GTGCGGGCGATATATGTCGT 60.388 55.000 20.89 0.00 43.27 4.34
677 678 0.109458 TGCGGGCGATATATGTCGTC 60.109 55.000 20.89 19.07 44.95 4.20
678 679 0.170561 GCGGGCGATATATGTCGTCT 59.829 55.000 22.98 0.00 45.03 4.18
679 680 1.402456 GCGGGCGATATATGTCGTCTT 60.402 52.381 22.98 0.00 45.03 3.01
680 681 2.516923 CGGGCGATATATGTCGTCTTC 58.483 52.381 22.98 9.07 45.03 2.87
681 682 2.516923 GGGCGATATATGTCGTCTTCG 58.483 52.381 22.98 0.00 45.03 3.79
682 683 2.161012 GGGCGATATATGTCGTCTTCGA 59.839 50.000 22.98 0.00 45.03 3.71
713 722 2.072298 GACATGCTGTCACCACTCTTC 58.928 52.381 10.30 0.00 46.22 2.87
765 780 3.340928 CATCACCATCACCATCGCATAT 58.659 45.455 0.00 0.00 0.00 1.78
785 800 1.264749 ACACAGCCGGAGATGCCTTA 61.265 55.000 5.05 0.00 0.00 2.69
977 994 1.081092 AGAGCCAAGCTAGGGTGGA 59.919 57.895 6.34 0.00 39.88 4.02
1119 1140 1.227205 CATGCTCGTCTGGCTCCTC 60.227 63.158 0.00 0.00 0.00 3.71
1158 1179 0.323178 ACATACAGTCCGACGACCCT 60.323 55.000 0.00 0.00 40.12 4.34
1180 1201 3.437741 TGAGCAGATCTTCAACGTACGTA 59.562 43.478 23.12 5.71 0.00 3.57
1184 1205 1.842546 GATCTTCAACGTACGTACCGC 59.157 52.381 23.12 4.17 0.00 5.68
1185 1206 0.109781 TCTTCAACGTACGTACCGCC 60.110 55.000 23.12 0.00 0.00 6.13
1186 1207 0.387112 CTTCAACGTACGTACCGCCA 60.387 55.000 23.12 2.06 0.00 5.69
1187 1208 0.662970 TTCAACGTACGTACCGCCAC 60.663 55.000 23.12 0.00 0.00 5.01
1188 1209 2.088178 CAACGTACGTACCGCCACC 61.088 63.158 23.12 0.00 0.00 4.61
1189 1210 3.609214 AACGTACGTACCGCCACCG 62.609 63.158 23.12 8.88 0.00 4.94
1202 1238 1.305930 GCCACCGGTGTTCTTGATCC 61.306 60.000 31.80 5.88 0.00 3.36
1208 1244 1.743996 GGTGTTCTTGATCCCTCTGC 58.256 55.000 0.00 0.00 0.00 4.26
1211 1247 3.006247 GTGTTCTTGATCCCTCTGCTTC 58.994 50.000 0.00 0.00 0.00 3.86
1213 1249 3.328931 TGTTCTTGATCCCTCTGCTTCTT 59.671 43.478 0.00 0.00 0.00 2.52
1215 1251 4.213564 TCTTGATCCCTCTGCTTCTTTC 57.786 45.455 0.00 0.00 0.00 2.62
1216 1252 3.584406 TCTTGATCCCTCTGCTTCTTTCA 59.416 43.478 0.00 0.00 0.00 2.69
1218 1254 4.148128 TGATCCCTCTGCTTCTTTCATC 57.852 45.455 0.00 0.00 0.00 2.92
1221 1257 3.947868 TCCCTCTGCTTCTTTCATCTTG 58.052 45.455 0.00 0.00 0.00 3.02
1222 1258 2.422832 CCCTCTGCTTCTTTCATCTTGC 59.577 50.000 0.00 0.00 0.00 4.01
1223 1259 3.079578 CCTCTGCTTCTTTCATCTTGCA 58.920 45.455 0.00 0.00 0.00 4.08
1224 1260 3.695060 CCTCTGCTTCTTTCATCTTGCAT 59.305 43.478 0.00 0.00 0.00 3.96
1225 1261 4.438880 CCTCTGCTTCTTTCATCTTGCATG 60.439 45.833 0.00 0.00 0.00 4.06
1226 1262 4.077108 TCTGCTTCTTTCATCTTGCATGT 58.923 39.130 0.00 0.00 0.00 3.21
1227 1263 4.082949 TCTGCTTCTTTCATCTTGCATGTG 60.083 41.667 0.00 0.00 0.00 3.21
1228 1264 3.570975 TGCTTCTTTCATCTTGCATGTGT 59.429 39.130 0.00 0.00 0.00 3.72
1229 1265 3.918591 GCTTCTTTCATCTTGCATGTGTG 59.081 43.478 0.00 1.20 0.00 3.82
1230 1266 4.320714 GCTTCTTTCATCTTGCATGTGTGA 60.321 41.667 0.00 3.43 0.00 3.58
1231 1267 5.621555 GCTTCTTTCATCTTGCATGTGTGAT 60.622 40.000 9.80 0.00 0.00 3.06
1232 1268 5.556355 TCTTTCATCTTGCATGTGTGATC 57.444 39.130 9.80 0.00 0.00 2.92
1233 1269 4.093850 TCTTTCATCTTGCATGTGTGATCG 59.906 41.667 9.80 6.15 0.00 3.69
1234 1270 2.976589 TCATCTTGCATGTGTGATCGT 58.023 42.857 0.00 0.00 0.00 3.73
1235 1271 2.931969 TCATCTTGCATGTGTGATCGTC 59.068 45.455 0.00 0.00 0.00 4.20
1236 1272 1.349234 TCTTGCATGTGTGATCGTCG 58.651 50.000 0.00 0.00 0.00 5.12
1237 1273 1.067915 TCTTGCATGTGTGATCGTCGA 60.068 47.619 0.00 0.00 0.00 4.20
1238 1274 1.059692 CTTGCATGTGTGATCGTCGAC 59.940 52.381 5.18 5.18 0.00 4.20
1239 1275 0.243636 TGCATGTGTGATCGTCGACT 59.756 50.000 14.70 0.00 0.00 4.18
1240 1276 0.642291 GCATGTGTGATCGTCGACTG 59.358 55.000 14.70 7.51 0.00 3.51
1241 1277 0.642291 CATGTGTGATCGTCGACTGC 59.358 55.000 14.70 3.14 0.00 4.40
1242 1278 0.243636 ATGTGTGATCGTCGACTGCA 59.756 50.000 14.70 5.90 0.00 4.41
1243 1279 0.243636 TGTGTGATCGTCGACTGCAT 59.756 50.000 14.70 2.51 0.00 3.96
1244 1280 1.336795 TGTGTGATCGTCGACTGCATT 60.337 47.619 14.70 0.00 0.00 3.56
1245 1281 1.059692 GTGTGATCGTCGACTGCATTG 59.940 52.381 14.70 0.00 0.00 2.82
1246 1282 1.336795 TGTGATCGTCGACTGCATTGT 60.337 47.619 14.70 0.00 0.00 2.71
1247 1283 1.726791 GTGATCGTCGACTGCATTGTT 59.273 47.619 14.70 0.00 0.00 2.83
1248 1284 2.921121 GTGATCGTCGACTGCATTGTTA 59.079 45.455 14.70 0.00 0.00 2.41
1249 1285 2.921121 TGATCGTCGACTGCATTGTTAC 59.079 45.455 14.70 0.00 0.00 2.50
1250 1286 1.705256 TCGTCGACTGCATTGTTACC 58.295 50.000 14.70 0.00 0.00 2.85
1251 1287 1.271379 TCGTCGACTGCATTGTTACCT 59.729 47.619 14.70 0.00 0.00 3.08
1252 1288 2.066262 CGTCGACTGCATTGTTACCTT 58.934 47.619 14.70 0.00 0.00 3.50
1253 1289 3.057386 TCGTCGACTGCATTGTTACCTTA 60.057 43.478 14.70 0.00 0.00 2.69
1254 1290 3.863424 CGTCGACTGCATTGTTACCTTAT 59.137 43.478 14.70 0.00 0.00 1.73
1255 1291 4.328983 CGTCGACTGCATTGTTACCTTATT 59.671 41.667 14.70 0.00 0.00 1.40
1256 1292 5.163893 CGTCGACTGCATTGTTACCTTATTT 60.164 40.000 14.70 0.00 0.00 1.40
1257 1293 6.035220 CGTCGACTGCATTGTTACCTTATTTA 59.965 38.462 14.70 0.00 0.00 1.40
1258 1294 7.254319 CGTCGACTGCATTGTTACCTTATTTAT 60.254 37.037 14.70 0.00 0.00 1.40
1259 1295 8.395633 GTCGACTGCATTGTTACCTTATTTATT 58.604 33.333 8.70 0.00 0.00 1.40
1260 1296 8.952278 TCGACTGCATTGTTACCTTATTTATTT 58.048 29.630 0.00 0.00 0.00 1.40
1304 1363 6.488344 TCTGGCACTAGTAGTATTGATCTCTG 59.512 42.308 1.57 0.00 0.00 3.35
1313 1372 8.526667 AGTAGTATTGATCTCTGCTTTCTGTA 57.473 34.615 0.00 0.00 0.00 2.74
1364 1427 1.943340 GGGTTCATTCTTCTCATCGGC 59.057 52.381 0.00 0.00 0.00 5.54
1388 1455 2.300723 AGGTACGTCCAATGCACACTAA 59.699 45.455 0.00 0.00 39.02 2.24
1394 1461 2.744202 GTCCAATGCACACTAACCTGAG 59.256 50.000 0.00 0.00 0.00 3.35
1431 1498 1.005450 ACCAACTCCCAAACACAGTGT 59.995 47.619 0.00 0.00 0.00 3.55
1432 1499 2.240160 ACCAACTCCCAAACACAGTGTA 59.760 45.455 6.63 0.00 0.00 2.90
1433 1500 3.117663 ACCAACTCCCAAACACAGTGTAT 60.118 43.478 6.63 0.00 0.00 2.29
1434 1501 3.253188 CCAACTCCCAAACACAGTGTATG 59.747 47.826 6.63 0.00 0.00 2.39
1435 1502 2.504367 ACTCCCAAACACAGTGTATGC 58.496 47.619 6.63 0.00 0.00 3.14
1436 1503 1.464608 CTCCCAAACACAGTGTATGCG 59.535 52.381 6.63 0.00 0.00 4.73
1437 1504 0.109781 CCCAAACACAGTGTATGCGC 60.110 55.000 6.63 0.00 0.00 6.09
1438 1505 0.590682 CCAAACACAGTGTATGCGCA 59.409 50.000 14.96 14.96 0.00 6.09
1439 1506 1.001924 CCAAACACAGTGTATGCGCAA 60.002 47.619 17.11 0.11 0.00 4.85
1440 1507 2.542618 CCAAACACAGTGTATGCGCAAA 60.543 45.455 17.11 0.00 0.00 3.68
1441 1508 3.111838 CAAACACAGTGTATGCGCAAAA 58.888 40.909 17.11 2.00 0.00 2.44
1442 1509 3.428746 AACACAGTGTATGCGCAAAAA 57.571 38.095 17.11 0.00 0.00 1.94
1511 1578 5.801531 ACCTTTTTGTGGGAATCTTAACC 57.198 39.130 0.00 0.00 0.00 2.85
1537 1608 8.973182 CAAGGTTTAGGGGAGATAGATAGATAC 58.027 40.741 0.00 0.00 0.00 2.24
1545 1616 8.723365 AGGGGAGATAGATAGATACATGAGTAG 58.277 40.741 0.00 0.00 32.86 2.57
1546 1617 8.499406 GGGGAGATAGATAGATACATGAGTAGT 58.501 40.741 0.00 0.00 32.86 2.73
1581 1684 5.351233 AAACGTCGCAACAGAATCATTAA 57.649 34.783 0.00 0.00 0.00 1.40
1598 1701 6.408035 ATCATTAATGATTGCCAAAAGCACA 58.592 32.000 22.65 0.00 44.70 4.57
1599 1702 6.537301 ATCATTAATGATTGCCAAAAGCACAG 59.463 34.615 22.65 0.00 44.70 3.66
1600 1703 7.795724 ATCATTAATGATTGCCAAAAGCACAGT 60.796 33.333 22.65 0.00 44.70 3.55
1677 1818 4.387862 GTCACCACACTACATTTTAGACCG 59.612 45.833 0.00 0.00 0.00 4.79
1720 1861 1.228033 GTAGGTGTTTGGTGGCCGT 60.228 57.895 0.00 0.00 0.00 5.68
1799 1940 1.026718 GCCAAAGGTCACCTCGGATG 61.027 60.000 15.31 4.49 30.89 3.51
1800 1941 0.613260 CCAAAGGTCACCTCGGATGA 59.387 55.000 6.42 0.00 30.89 2.92
1801 1942 1.210478 CCAAAGGTCACCTCGGATGAT 59.790 52.381 6.42 0.00 30.89 2.45
1802 1943 2.283298 CAAAGGTCACCTCGGATGATG 58.717 52.381 0.00 0.00 30.89 3.07
1819 1960 2.002586 GATGGATGCCGATAATGACCG 58.997 52.381 0.00 0.00 0.00 4.79
1867 2008 3.833732 AGCTCATCATCCATCTTGCAAT 58.166 40.909 0.00 0.00 0.00 3.56
1891 2033 3.938963 GGCATATGGTTGGTACATATCCG 59.061 47.826 4.56 0.00 38.98 4.18
1894 2036 6.346096 GCATATGGTTGGTACATATCCGTAT 58.654 40.000 4.56 1.01 38.98 3.06
1897 2039 3.388350 TGGTTGGTACATATCCGTATGCA 59.612 43.478 0.00 0.00 41.15 3.96
1912 2054 7.379098 TCCGTATGCAAAATTAACATGTACA 57.621 32.000 0.00 0.00 0.00 2.90
1913 2055 7.990917 TCCGTATGCAAAATTAACATGTACAT 58.009 30.769 1.41 1.41 0.00 2.29
1914 2056 9.110502 TCCGTATGCAAAATTAACATGTACATA 57.889 29.630 8.32 0.00 0.00 2.29
1915 2057 9.891828 CCGTATGCAAAATTAACATGTACATAT 57.108 29.630 8.32 3.31 0.00 1.78
1919 2061 7.990917 TGCAAAATTAACATGTACATATCCGT 58.009 30.769 8.32 0.00 0.00 4.69
1920 2062 9.110502 TGCAAAATTAACATGTACATATCCGTA 57.889 29.630 8.32 0.00 0.00 4.02
2392 2551 2.882876 CCACGCGCTACCAGTAGT 59.117 61.111 5.73 0.00 35.65 2.73
2393 2552 1.996786 GCCACGCGCTACCAGTAGTA 61.997 60.000 5.73 0.00 35.65 1.82
2411 2571 2.816012 GCTCGGTAGCCCCTCTTC 59.184 66.667 0.00 0.00 43.40 2.87
2468 2668 6.342111 GTTGGGTTTCTTTCACCATTTGTAA 58.658 36.000 0.00 0.00 35.80 2.41
2555 2766 3.252215 TGCGTTATGTCCTGAACCTTTTG 59.748 43.478 0.00 0.00 0.00 2.44
2702 2917 3.948473 GGTGTGTCTAGTGCTCATCTAGA 59.052 47.826 0.00 0.00 40.71 2.43
2706 2921 5.888161 TGTGTCTAGTGCTCATCTAGATGAA 59.112 40.000 30.28 17.70 46.10 2.57
2828 3043 8.753497 AGATGGGACTTTGTTATTTCTTATCC 57.247 34.615 0.00 0.00 0.00 2.59
2854 3069 7.931948 CACTCCCTCCGTTCATAAATATAAGTT 59.068 37.037 0.00 0.00 0.00 2.66
2907 3122 4.259970 CGGAGCAAAATGAGTGAATCTACG 60.260 45.833 0.00 0.00 0.00 3.51
2910 3125 4.331168 AGCAAAATGAGTGAATCTACGCTC 59.669 41.667 0.00 0.00 44.55 5.03
3007 3224 7.071698 AGGGAGTAGATGAGAATTAGCAAATCA 59.928 37.037 0.00 0.00 0.00 2.57
3222 3440 7.706159 TCATCAAGTCATGCATGTATTTTACC 58.294 34.615 25.43 5.64 0.00 2.85
3242 3460 2.681848 CCAGGAGACTCAATTCATGCAC 59.318 50.000 4.53 0.00 40.21 4.57
3259 3477 2.359214 TGCACGACATTGGCAAGTTAAA 59.641 40.909 5.96 0.00 34.05 1.52
3317 3535 1.597854 TGTTGGACGCTTGGAGCAG 60.598 57.895 0.50 0.00 42.58 4.24
3343 3561 9.090692 GAAATATAAAGCTCATGTTGCACATTT 57.909 29.630 13.86 9.11 36.53 2.32
3377 3595 5.781210 TGCATTGTGTTAAGTTCAATCCA 57.219 34.783 0.00 0.00 30.74 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 6.708054 TGAAGCAACACAAAGAAAAGGAAAAA 59.292 30.769 0.00 0.00 0.00 1.94
49 50 6.226787 TGAAGCAACACAAAGAAAAGGAAAA 58.773 32.000 0.00 0.00 0.00 2.29
50 51 5.788450 TGAAGCAACACAAAGAAAAGGAAA 58.212 33.333 0.00 0.00 0.00 3.13
51 52 5.047377 ACTGAAGCAACACAAAGAAAAGGAA 60.047 36.000 0.00 0.00 0.00 3.36
52 53 4.462483 ACTGAAGCAACACAAAGAAAAGGA 59.538 37.500 0.00 0.00 0.00 3.36
53 54 4.747810 ACTGAAGCAACACAAAGAAAAGG 58.252 39.130 0.00 0.00 0.00 3.11
54 55 6.710692 AAACTGAAGCAACACAAAGAAAAG 57.289 33.333 0.00 0.00 0.00 2.27
55 56 6.928492 AGAAAACTGAAGCAACACAAAGAAAA 59.072 30.769 0.00 0.00 0.00 2.29
56 57 6.454795 AGAAAACTGAAGCAACACAAAGAAA 58.545 32.000 0.00 0.00 0.00 2.52
57 58 6.024552 AGAAAACTGAAGCAACACAAAGAA 57.975 33.333 0.00 0.00 0.00 2.52
58 59 5.643379 AGAAAACTGAAGCAACACAAAGA 57.357 34.783 0.00 0.00 0.00 2.52
59 60 6.146021 ACAAAGAAAACTGAAGCAACACAAAG 59.854 34.615 0.00 0.00 0.00 2.77
60 61 5.988561 ACAAAGAAAACTGAAGCAACACAAA 59.011 32.000 0.00 0.00 0.00 2.83
61 62 5.537188 ACAAAGAAAACTGAAGCAACACAA 58.463 33.333 0.00 0.00 0.00 3.33
62 63 5.132897 ACAAAGAAAACTGAAGCAACACA 57.867 34.783 0.00 0.00 0.00 3.72
63 64 6.366061 AGAAACAAAGAAAACTGAAGCAACAC 59.634 34.615 0.00 0.00 0.00 3.32
64 65 6.454795 AGAAACAAAGAAAACTGAAGCAACA 58.545 32.000 0.00 0.00 0.00 3.33
65 66 6.951256 AGAAACAAAGAAAACTGAAGCAAC 57.049 33.333 0.00 0.00 0.00 4.17
66 67 7.872483 AGAAAGAAACAAAGAAAACTGAAGCAA 59.128 29.630 0.00 0.00 0.00 3.91
67 68 7.378181 AGAAAGAAACAAAGAAAACTGAAGCA 58.622 30.769 0.00 0.00 0.00 3.91
68 69 7.818493 AGAAAGAAACAAAGAAAACTGAAGC 57.182 32.000 0.00 0.00 0.00 3.86
69 70 8.650714 CCAAGAAAGAAACAAAGAAAACTGAAG 58.349 33.333 0.00 0.00 0.00 3.02
70 71 8.147704 ACCAAGAAAGAAACAAAGAAAACTGAA 58.852 29.630 0.00 0.00 0.00 3.02
71 72 7.666623 ACCAAGAAAGAAACAAAGAAAACTGA 58.333 30.769 0.00 0.00 0.00 3.41
72 73 7.889589 ACCAAGAAAGAAACAAAGAAAACTG 57.110 32.000 0.00 0.00 0.00 3.16
73 74 8.902540 AAACCAAGAAAGAAACAAAGAAAACT 57.097 26.923 0.00 0.00 0.00 2.66
74 75 8.769891 TGAAACCAAGAAAGAAACAAAGAAAAC 58.230 29.630 0.00 0.00 0.00 2.43
75 76 8.894768 TGAAACCAAGAAAGAAACAAAGAAAA 57.105 26.923 0.00 0.00 0.00 2.29
76 77 8.894768 TTGAAACCAAGAAAGAAACAAAGAAA 57.105 26.923 0.00 0.00 0.00 2.52
77 78 8.934825 CATTGAAACCAAGAAAGAAACAAAGAA 58.065 29.630 0.00 0.00 0.00 2.52
78 79 8.310382 TCATTGAAACCAAGAAAGAAACAAAGA 58.690 29.630 0.00 0.00 0.00 2.52
79 80 8.477984 TCATTGAAACCAAGAAAGAAACAAAG 57.522 30.769 0.00 0.00 0.00 2.77
80 81 8.839310 TTCATTGAAACCAAGAAAGAAACAAA 57.161 26.923 0.00 0.00 0.00 2.83
81 82 9.447157 AATTCATTGAAACCAAGAAAGAAACAA 57.553 25.926 2.68 0.00 0.00 2.83
82 83 9.447157 AAATTCATTGAAACCAAGAAAGAAACA 57.553 25.926 2.68 0.00 0.00 2.83
119 120 7.333174 AGCCGAAGAAAAATGAAGAAACAAAAA 59.667 29.630 0.00 0.00 0.00 1.94
120 121 6.816140 AGCCGAAGAAAAATGAAGAAACAAAA 59.184 30.769 0.00 0.00 0.00 2.44
121 122 6.337356 AGCCGAAGAAAAATGAAGAAACAAA 58.663 32.000 0.00 0.00 0.00 2.83
122 123 5.901552 AGCCGAAGAAAAATGAAGAAACAA 58.098 33.333 0.00 0.00 0.00 2.83
123 124 5.514274 AGCCGAAGAAAAATGAAGAAACA 57.486 34.783 0.00 0.00 0.00 2.83
124 125 6.255670 ACAAAGCCGAAGAAAAATGAAGAAAC 59.744 34.615 0.00 0.00 0.00 2.78
125 126 6.337356 ACAAAGCCGAAGAAAAATGAAGAAA 58.663 32.000 0.00 0.00 0.00 2.52
126 127 5.901552 ACAAAGCCGAAGAAAAATGAAGAA 58.098 33.333 0.00 0.00 0.00 2.52
127 128 5.514274 ACAAAGCCGAAGAAAAATGAAGA 57.486 34.783 0.00 0.00 0.00 2.87
128 129 6.035975 ACAAACAAAGCCGAAGAAAAATGAAG 59.964 34.615 0.00 0.00 0.00 3.02
129 130 5.872070 ACAAACAAAGCCGAAGAAAAATGAA 59.128 32.000 0.00 0.00 0.00 2.57
130 131 5.415221 ACAAACAAAGCCGAAGAAAAATGA 58.585 33.333 0.00 0.00 0.00 2.57
131 132 5.717038 ACAAACAAAGCCGAAGAAAAATG 57.283 34.783 0.00 0.00 0.00 2.32
132 133 6.735678 AAACAAACAAAGCCGAAGAAAAAT 57.264 29.167 0.00 0.00 0.00 1.82
133 134 7.332182 ACATAAACAAACAAAGCCGAAGAAAAA 59.668 29.630 0.00 0.00 0.00 1.94
134 135 6.814146 ACATAAACAAACAAAGCCGAAGAAAA 59.186 30.769 0.00 0.00 0.00 2.29
135 136 6.334202 ACATAAACAAACAAAGCCGAAGAAA 58.666 32.000 0.00 0.00 0.00 2.52
136 137 5.897050 ACATAAACAAACAAAGCCGAAGAA 58.103 33.333 0.00 0.00 0.00 2.52
137 138 5.298276 AGACATAAACAAACAAAGCCGAAGA 59.702 36.000 0.00 0.00 0.00 2.87
138 139 5.519722 AGACATAAACAAACAAAGCCGAAG 58.480 37.500 0.00 0.00 0.00 3.79
139 140 5.298276 AGAGACATAAACAAACAAAGCCGAA 59.702 36.000 0.00 0.00 0.00 4.30
140 141 4.819630 AGAGACATAAACAAACAAAGCCGA 59.180 37.500 0.00 0.00 0.00 5.54
141 142 5.108385 AGAGACATAAACAAACAAAGCCG 57.892 39.130 0.00 0.00 0.00 5.52
142 143 7.770801 AAAAGAGACATAAACAAACAAAGCC 57.229 32.000 0.00 0.00 0.00 4.35
143 144 8.868916 TGAAAAAGAGACATAAACAAACAAAGC 58.131 29.630 0.00 0.00 0.00 3.51
188 189 9.621629 TGTAGAAAAACTATGAAACTTGAGGAA 57.378 29.630 0.00 0.00 33.39 3.36
189 190 9.052759 GTGTAGAAAAACTATGAAACTTGAGGA 57.947 33.333 0.00 0.00 33.39 3.71
190 191 8.836413 TGTGTAGAAAAACTATGAAACTTGAGG 58.164 33.333 0.00 0.00 33.39 3.86
191 192 9.651718 GTGTGTAGAAAAACTATGAAACTTGAG 57.348 33.333 0.00 0.00 33.39 3.02
192 193 9.168451 TGTGTGTAGAAAAACTATGAAACTTGA 57.832 29.630 0.00 0.00 33.39 3.02
193 194 9.950680 ATGTGTGTAGAAAAACTATGAAACTTG 57.049 29.630 0.00 0.00 33.39 3.16
230 231 9.485206 AACGTGTGTTAGAAAAATGTACTAGAT 57.515 29.630 0.00 0.00 36.28 1.98
231 232 8.876275 AACGTGTGTTAGAAAAATGTACTAGA 57.124 30.769 0.00 0.00 36.28 2.43
234 235 8.881743 TGTTAACGTGTGTTAGAAAAATGTACT 58.118 29.630 0.26 0.00 41.37 2.73
235 236 9.654417 ATGTTAACGTGTGTTAGAAAAATGTAC 57.346 29.630 0.00 0.00 41.37 2.90
237 238 9.575783 AAATGTTAACGTGTGTTAGAAAAATGT 57.424 25.926 0.00 0.00 41.37 2.71
241 242 9.622004 TGAAAAATGTTAACGTGTGTTAGAAAA 57.378 25.926 0.00 0.00 41.37 2.29
242 243 9.622004 TTGAAAAATGTTAACGTGTGTTAGAAA 57.378 25.926 0.00 0.00 41.37 2.52
243 244 9.622004 TTTGAAAAATGTTAACGTGTGTTAGAA 57.378 25.926 0.00 0.00 41.37 2.10
244 245 9.790389 ATTTGAAAAATGTTAACGTGTGTTAGA 57.210 25.926 0.00 0.00 41.37 2.10
274 275 9.705290 GACCAAGTATCCACAAAATGTTAAATT 57.295 29.630 0.00 0.00 0.00 1.82
275 276 8.865090 TGACCAAGTATCCACAAAATGTTAAAT 58.135 29.630 0.00 0.00 0.00 1.40
276 277 8.239038 TGACCAAGTATCCACAAAATGTTAAA 57.761 30.769 0.00 0.00 0.00 1.52
277 278 7.825331 TGACCAAGTATCCACAAAATGTTAA 57.175 32.000 0.00 0.00 0.00 2.01
278 279 7.825331 TTGACCAAGTATCCACAAAATGTTA 57.175 32.000 0.00 0.00 0.00 2.41
279 280 6.723298 TTGACCAAGTATCCACAAAATGTT 57.277 33.333 0.00 0.00 0.00 2.71
280 281 6.916360 ATTGACCAAGTATCCACAAAATGT 57.084 33.333 0.00 0.00 0.00 2.71
281 282 9.874205 AAATATTGACCAAGTATCCACAAAATG 57.126 29.630 0.00 0.00 0.00 2.32
309 310 9.762381 AGGTAAATCCCAAAATTGTGTATAGAA 57.238 29.630 0.00 0.00 36.75 2.10
314 315 9.976776 TGTATAGGTAAATCCCAAAATTGTGTA 57.023 29.630 0.00 0.00 36.75 2.90
315 316 8.887264 TGTATAGGTAAATCCCAAAATTGTGT 57.113 30.769 0.00 0.00 36.75 3.72
316 317 9.965824 GATGTATAGGTAAATCCCAAAATTGTG 57.034 33.333 0.00 0.00 36.75 3.33
317 318 9.936329 AGATGTATAGGTAAATCCCAAAATTGT 57.064 29.630 0.00 0.00 36.75 2.71
364 365 9.807386 GAACAACATGTTGACTATGTAGTAAAC 57.193 33.333 38.30 11.81 44.47 2.01
365 366 9.549078 TGAACAACATGTTGACTATGTAGTAAA 57.451 29.630 38.30 13.16 41.28 2.01
366 367 9.549078 TTGAACAACATGTTGACTATGTAGTAA 57.451 29.630 38.30 18.10 41.28 2.24
367 368 9.719355 ATTGAACAACATGTTGACTATGTAGTA 57.281 29.630 38.30 15.57 41.28 1.82
368 369 8.621532 ATTGAACAACATGTTGACTATGTAGT 57.378 30.769 38.30 14.97 41.28 2.73
369 370 9.897744 AAATTGAACAACATGTTGACTATGTAG 57.102 29.630 38.30 14.30 41.28 2.74
371 372 9.598517 AAAAATTGAACAACATGTTGACTATGT 57.401 25.926 38.30 24.68 41.28 2.29
426 427 9.768662 AGAACATGTGAAAATTTAATCAAGCTT 57.231 25.926 0.00 0.00 0.00 3.74
443 444 9.345517 CCAAAATAACTCAACATAGAACATGTG 57.654 33.333 0.00 0.00 31.80 3.21
444 445 9.077885 ACCAAAATAACTCAACATAGAACATGT 57.922 29.630 0.00 0.00 0.00 3.21
539 540 9.883142 TGTTTGGTTTTTCTTTCATTTGTCTAT 57.117 25.926 0.00 0.00 0.00 1.98
540 541 9.712305 TTGTTTGGTTTTTCTTTCATTTGTCTA 57.288 25.926 0.00 0.00 0.00 2.59
541 542 8.614469 TTGTTTGGTTTTTCTTTCATTTGTCT 57.386 26.923 0.00 0.00 0.00 3.41
547 548 8.334632 CGCTTTATTGTTTGGTTTTTCTTTCAT 58.665 29.630 0.00 0.00 0.00 2.57
548 549 7.545965 TCGCTTTATTGTTTGGTTTTTCTTTCA 59.454 29.630 0.00 0.00 0.00 2.69
549 550 7.844169 GTCGCTTTATTGTTTGGTTTTTCTTTC 59.156 33.333 0.00 0.00 0.00 2.62
550 551 7.463515 CGTCGCTTTATTGTTTGGTTTTTCTTT 60.464 33.333 0.00 0.00 0.00 2.52
551 552 6.020201 CGTCGCTTTATTGTTTGGTTTTTCTT 60.020 34.615 0.00 0.00 0.00 2.52
552 553 5.457473 CGTCGCTTTATTGTTTGGTTTTTCT 59.543 36.000 0.00 0.00 0.00 2.52
553 554 5.331980 CCGTCGCTTTATTGTTTGGTTTTTC 60.332 40.000 0.00 0.00 0.00 2.29
554 555 4.504826 CCGTCGCTTTATTGTTTGGTTTTT 59.495 37.500 0.00 0.00 0.00 1.94
555 556 4.045783 CCGTCGCTTTATTGTTTGGTTTT 58.954 39.130 0.00 0.00 0.00 2.43
556 557 3.067040 ACCGTCGCTTTATTGTTTGGTTT 59.933 39.130 0.00 0.00 0.00 3.27
557 558 2.619646 ACCGTCGCTTTATTGTTTGGTT 59.380 40.909 0.00 0.00 0.00 3.67
558 559 2.223745 ACCGTCGCTTTATTGTTTGGT 58.776 42.857 0.00 0.00 0.00 3.67
559 560 2.981400 ACCGTCGCTTTATTGTTTGG 57.019 45.000 0.00 0.00 0.00 3.28
560 561 3.231160 GGAACCGTCGCTTTATTGTTTG 58.769 45.455 0.00 0.00 0.00 2.93
561 562 2.227149 GGGAACCGTCGCTTTATTGTTT 59.773 45.455 0.00 0.00 40.86 2.83
562 563 1.808343 GGGAACCGTCGCTTTATTGTT 59.192 47.619 0.00 0.00 40.86 2.83
563 564 1.445871 GGGAACCGTCGCTTTATTGT 58.554 50.000 0.00 0.00 40.86 2.71
577 578 1.808411 TCATGCGAAACAGAGGGAAC 58.192 50.000 0.00 0.00 0.00 3.62
578 579 2.426522 CTTCATGCGAAACAGAGGGAA 58.573 47.619 0.00 0.00 0.00 3.97
579 580 1.945819 GCTTCATGCGAAACAGAGGGA 60.946 52.381 0.00 0.00 0.00 4.20
580 581 0.449388 GCTTCATGCGAAACAGAGGG 59.551 55.000 0.00 0.00 0.00 4.30
581 582 3.984292 GCTTCATGCGAAACAGAGG 57.016 52.632 0.00 0.00 0.00 3.69
591 592 1.506493 CCCTATGTCTCGCTTCATGC 58.494 55.000 0.00 0.00 38.57 4.06
592 593 1.875576 GCCCCTATGTCTCGCTTCATG 60.876 57.143 0.00 0.00 0.00 3.07
593 594 0.394565 GCCCCTATGTCTCGCTTCAT 59.605 55.000 0.00 0.00 0.00 2.57
594 595 1.823295 GCCCCTATGTCTCGCTTCA 59.177 57.895 0.00 0.00 0.00 3.02
595 596 1.300233 CGCCCCTATGTCTCGCTTC 60.300 63.158 0.00 0.00 0.00 3.86
596 597 2.815308 CGCCCCTATGTCTCGCTT 59.185 61.111 0.00 0.00 0.00 4.68
597 598 3.917760 GCGCCCCTATGTCTCGCT 61.918 66.667 0.00 0.00 42.19 4.93
598 599 4.971125 GGCGCCCCTATGTCTCGC 62.971 72.222 18.11 0.00 44.39 5.03
599 600 3.214250 GAGGCGCCCCTATGTCTCG 62.214 68.421 26.15 0.00 43.12 4.04
600 601 2.737830 GAGGCGCCCCTATGTCTC 59.262 66.667 26.15 7.69 43.12 3.36
601 602 3.227276 CGAGGCGCCCCTATGTCT 61.227 66.667 26.15 0.00 43.12 3.41
613 614 4.925576 TAAGCTAGCGCGCGAGGC 62.926 66.667 36.22 31.96 42.32 4.70
614 615 2.727647 CTAAGCTAGCGCGCGAGG 60.728 66.667 36.22 25.28 42.32 4.63
615 616 2.727647 CCTAAGCTAGCGCGCGAG 60.728 66.667 37.18 33.00 42.32 5.03
616 617 4.266070 CCCTAAGCTAGCGCGCGA 62.266 66.667 37.18 21.03 42.32 5.87
619 620 4.971125 GGGCCCTAAGCTAGCGCG 62.971 72.222 17.04 0.00 43.05 6.86
620 621 4.971125 CGGGCCCTAAGCTAGCGC 62.971 72.222 22.43 0.00 43.05 5.92
621 622 2.588856 AAACGGGCCCTAAGCTAGCG 62.589 60.000 22.43 5.35 43.05 4.26
631 632 1.306148 GTAAGCATCTAAACGGGCCC 58.694 55.000 13.57 13.57 0.00 5.80
640 641 0.384309 CACTCGGCCGTAAGCATCTA 59.616 55.000 27.15 0.17 46.50 1.98
641 642 1.141881 CACTCGGCCGTAAGCATCT 59.858 57.895 27.15 0.00 46.50 2.90
654 655 0.109272 ACATATATCGCCCGCACTCG 60.109 55.000 0.00 0.00 0.00 4.18
655 656 1.630148 GACATATATCGCCCGCACTC 58.370 55.000 0.00 0.00 0.00 3.51
661 662 2.161012 TCGAAGACGACATATATCGCCC 59.839 50.000 2.67 0.00 46.22 6.13
705 714 2.093447 AGCAAGTAATCCCGAAGAGTGG 60.093 50.000 0.00 0.00 0.00 4.00
708 717 3.198872 GGAAGCAAGTAATCCCGAAGAG 58.801 50.000 0.00 0.00 0.00 2.85
765 780 1.264749 AAGGCATCTCCGGCTGTGTA 61.265 55.000 0.00 0.00 41.70 2.90
785 800 2.713154 GGCGTGCGTGTTGAAAGT 59.287 55.556 0.00 0.00 0.00 2.66
856 871 1.165284 GGTTTTAACGTGGCCACCGA 61.165 55.000 29.95 12.57 0.00 4.69
977 994 0.030908 CGCGCCTAGCTAGCTACTTT 59.969 55.000 20.67 0.00 45.59 2.66
1158 1179 2.228103 ACGTACGTTGAAGATCTGCTCA 59.772 45.455 16.72 0.00 0.00 4.26
1180 1201 3.868985 AAGAACACCGGTGGCGGT 61.869 61.111 36.47 19.54 43.99 5.68
1184 1205 0.676782 GGGATCAAGAACACCGGTGG 60.677 60.000 36.47 19.50 34.19 4.61
1185 1206 0.324943 AGGGATCAAGAACACCGGTG 59.675 55.000 32.83 32.83 0.00 4.94
1186 1207 0.613777 GAGGGATCAAGAACACCGGT 59.386 55.000 0.00 0.00 0.00 5.28
1187 1208 0.905357 AGAGGGATCAAGAACACCGG 59.095 55.000 0.00 0.00 0.00 5.28
1188 1209 2.009042 GCAGAGGGATCAAGAACACCG 61.009 57.143 0.00 0.00 0.00 4.94
1189 1210 1.280421 AGCAGAGGGATCAAGAACACC 59.720 52.381 0.00 0.00 0.00 4.16
1190 1211 2.777832 AGCAGAGGGATCAAGAACAC 57.222 50.000 0.00 0.00 0.00 3.32
1192 1213 3.625649 AGAAGCAGAGGGATCAAGAAC 57.374 47.619 0.00 0.00 0.00 3.01
1194 1230 3.584406 TGAAAGAAGCAGAGGGATCAAGA 59.416 43.478 0.00 0.00 0.00 3.02
1197 1233 3.779183 AGATGAAAGAAGCAGAGGGATCA 59.221 43.478 0.00 0.00 0.00 2.92
1202 1238 3.079578 TGCAAGATGAAAGAAGCAGAGG 58.920 45.455 0.00 0.00 0.00 3.69
1208 1244 5.366829 TCACACATGCAAGATGAAAGAAG 57.633 39.130 0.00 0.00 0.00 2.85
1211 1247 4.142752 ACGATCACACATGCAAGATGAAAG 60.143 41.667 0.00 1.18 0.00 2.62
1213 1249 3.337358 ACGATCACACATGCAAGATGAA 58.663 40.909 0.00 0.00 0.00 2.57
1215 1251 2.285428 CGACGATCACACATGCAAGATG 60.285 50.000 0.00 0.00 0.00 2.90
1216 1252 1.929169 CGACGATCACACATGCAAGAT 59.071 47.619 0.00 0.00 0.00 2.40
1218 1254 1.059692 GTCGACGATCACACATGCAAG 59.940 52.381 0.00 0.00 0.00 4.01
1221 1257 0.642291 CAGTCGACGATCACACATGC 59.358 55.000 10.46 0.00 0.00 4.06
1222 1258 0.642291 GCAGTCGACGATCACACATG 59.358 55.000 10.46 0.34 0.00 3.21
1223 1259 0.243636 TGCAGTCGACGATCACACAT 59.756 50.000 10.46 0.00 0.00 3.21
1224 1260 0.243636 ATGCAGTCGACGATCACACA 59.756 50.000 10.46 2.51 0.00 3.72
1225 1261 1.059692 CAATGCAGTCGACGATCACAC 59.940 52.381 10.46 0.00 0.00 3.82
1226 1262 1.336795 ACAATGCAGTCGACGATCACA 60.337 47.619 10.46 5.74 0.00 3.58
1227 1263 1.350193 ACAATGCAGTCGACGATCAC 58.650 50.000 10.46 0.00 0.00 3.06
1228 1264 2.078849 AACAATGCAGTCGACGATCA 57.921 45.000 10.46 9.73 0.00 2.92
1229 1265 2.281762 GGTAACAATGCAGTCGACGATC 59.718 50.000 10.46 3.89 0.00 3.69
1230 1266 2.094182 AGGTAACAATGCAGTCGACGAT 60.094 45.455 10.46 0.74 41.41 3.73
1231 1267 1.271379 AGGTAACAATGCAGTCGACGA 59.729 47.619 10.46 0.00 41.41 4.20
1232 1268 1.710013 AGGTAACAATGCAGTCGACG 58.290 50.000 10.46 6.47 41.41 5.12
1233 1269 5.796350 AATAAGGTAACAATGCAGTCGAC 57.204 39.130 7.70 7.70 41.41 4.20
1234 1270 8.500753 AATAAATAAGGTAACAATGCAGTCGA 57.499 30.769 0.00 0.00 41.41 4.20
1259 1295 9.290988 TGCCAGATTTGTTTCTGTAATAAGTAA 57.709 29.630 1.24 0.00 41.30 2.24
1260 1296 8.726988 GTGCCAGATTTGTTTCTGTAATAAGTA 58.273 33.333 1.24 0.00 41.30 2.24
1261 1297 7.448469 AGTGCCAGATTTGTTTCTGTAATAAGT 59.552 33.333 1.24 0.00 41.30 2.24
1262 1298 7.820648 AGTGCCAGATTTGTTTCTGTAATAAG 58.179 34.615 1.24 0.00 41.30 1.73
1263 1299 7.759489 AGTGCCAGATTTGTTTCTGTAATAA 57.241 32.000 1.24 0.00 41.30 1.40
1264 1300 8.100791 ACTAGTGCCAGATTTGTTTCTGTAATA 58.899 33.333 0.00 0.00 41.30 0.98
1265 1301 6.942576 ACTAGTGCCAGATTTGTTTCTGTAAT 59.057 34.615 0.00 0.00 41.30 1.89
1277 1313 7.728083 AGAGATCAATACTACTAGTGCCAGATT 59.272 37.037 5.39 0.00 0.00 2.40
1278 1314 7.176515 CAGAGATCAATACTACTAGTGCCAGAT 59.823 40.741 5.39 1.62 0.00 2.90
1283 1319 6.325919 AGCAGAGATCAATACTACTAGTGC 57.674 41.667 5.39 0.00 0.00 4.40
1284 1320 8.629158 AGAAAGCAGAGATCAATACTACTAGTG 58.371 37.037 5.39 0.00 0.00 2.74
1285 1321 8.629158 CAGAAAGCAGAGATCAATACTACTAGT 58.371 37.037 0.00 0.00 0.00 2.57
1286 1322 8.629158 ACAGAAAGCAGAGATCAATACTACTAG 58.371 37.037 0.00 0.00 0.00 2.57
1288 1324 7.416964 ACAGAAAGCAGAGATCAATACTACT 57.583 36.000 0.00 0.00 0.00 2.57
1289 1325 9.757227 ATTACAGAAAGCAGAGATCAATACTAC 57.243 33.333 0.00 0.00 0.00 2.73
1290 1326 9.755804 CATTACAGAAAGCAGAGATCAATACTA 57.244 33.333 0.00 0.00 0.00 1.82
1313 1372 1.077663 ACAAAGGGATGGACCTGCATT 59.922 47.619 0.00 0.00 40.87 3.56
1364 1427 0.719465 GTGCATTGGACGTACCTTCG 59.281 55.000 0.00 0.00 39.86 3.79
1388 1455 2.365617 AGACGACATTGACAACTCAGGT 59.634 45.455 0.00 0.00 0.00 4.00
1394 1461 4.510340 AGTTGGTAAGACGACATTGACAAC 59.490 41.667 0.00 0.00 36.77 3.32
1445 1512 3.194755 GGTCACTGTGTTTGGGAGTTTTT 59.805 43.478 7.79 0.00 0.00 1.94
1446 1513 2.758423 GGTCACTGTGTTTGGGAGTTTT 59.242 45.455 7.79 0.00 0.00 2.43
1447 1514 2.025321 AGGTCACTGTGTTTGGGAGTTT 60.025 45.455 7.79 0.00 0.00 2.66
1511 1578 8.973182 GTATCTATCTATCTCCCCTAAACCTTG 58.027 40.741 0.00 0.00 0.00 3.61
1549 1620 0.574454 TGCGACGTTTTGCAAATTGC 59.426 45.000 13.65 11.58 45.29 3.56
1555 1628 0.448197 TTCTGTTGCGACGTTTTGCA 59.552 45.000 6.93 6.93 40.69 4.08
1598 1701 1.039856 GGCCCATGTCAACAACAACT 58.960 50.000 0.00 0.00 42.37 3.16
1599 1702 0.318614 CGGCCCATGTCAACAACAAC 60.319 55.000 0.00 0.00 42.37 3.32
1600 1703 0.466372 TCGGCCCATGTCAACAACAA 60.466 50.000 0.00 0.00 42.37 2.83
1653 1794 4.387862 GGTCTAAAATGTAGTGTGGTGACG 59.612 45.833 0.00 0.00 0.00 4.35
1677 1818 0.030369 CCTGCTACGTGTACCGATCC 59.970 60.000 0.00 0.20 40.70 3.36
1685 1826 0.682852 TACAAAGCCCTGCTACGTGT 59.317 50.000 0.00 0.00 38.25 4.49
1686 1827 1.359848 CTACAAAGCCCTGCTACGTG 58.640 55.000 0.00 0.00 38.25 4.49
1720 1861 0.771127 AGCCTGGTCCAGTGCTTTTA 59.229 50.000 22.32 0.00 35.58 1.52
1799 1940 2.002586 CGGTCATTATCGGCATCCATC 58.997 52.381 0.00 0.00 0.00 3.51
1800 1941 1.945819 GCGGTCATTATCGGCATCCAT 60.946 52.381 0.00 0.00 0.00 3.41
1801 1942 0.602638 GCGGTCATTATCGGCATCCA 60.603 55.000 0.00 0.00 0.00 3.41
1802 1943 2.162716 GCGGTCATTATCGGCATCC 58.837 57.895 0.00 0.00 0.00 3.51
1819 1960 1.356527 AAAACGTAGCGATCCACGGC 61.357 55.000 12.18 0.00 42.35 5.68
1867 2008 5.321102 GGATATGTACCAACCATATGCCAA 58.679 41.667 0.00 0.00 37.54 4.52
1877 2018 5.994887 TTTGCATACGGATATGTACCAAC 57.005 39.130 0.00 0.00 40.45 3.77
1894 2036 7.990917 ACGGATATGTACATGTTAATTTTGCA 58.009 30.769 18.81 0.00 0.00 4.08
1912 2054 3.861840 GTATGGCTGCACATACGGATAT 58.138 45.455 18.67 0.00 42.45 1.63
1913 2055 3.313012 GTATGGCTGCACATACGGATA 57.687 47.619 18.67 0.00 42.45 2.59
1914 2056 2.169832 GTATGGCTGCACATACGGAT 57.830 50.000 18.67 0.00 42.45 4.18
1915 2057 3.678921 GTATGGCTGCACATACGGA 57.321 52.632 18.67 0.00 42.45 4.69
2208 2367 1.443828 GAAGATGACGAGCCCTCCC 59.556 63.158 0.00 0.00 0.00 4.30
2211 2370 1.045911 GGAGGAAGATGACGAGCCCT 61.046 60.000 0.00 0.00 0.00 5.19
2395 2554 1.448922 CGAGAAGAGGGGCTACCGAG 61.449 65.000 0.00 0.00 46.96 4.63
2411 2571 2.166459 ACATGTACACAGACCCATCGAG 59.834 50.000 0.00 0.00 0.00 4.04
2468 2668 2.070783 CGTAAACATGTACCAGCCGTT 58.929 47.619 0.00 0.00 0.00 4.44
2504 2707 0.174617 CGCAAACCACCCAAACTTGT 59.825 50.000 0.00 0.00 0.00 3.16
2555 2766 1.933853 AGCCGATTAGAAATGTCGCAC 59.066 47.619 0.00 0.00 34.25 5.34
2778 2993 5.630121 ACTCCCACACATCATTTGAGTAAA 58.370 37.500 0.00 0.00 30.35 2.01
2828 3043 7.442656 ACTTATATTTATGAACGGAGGGAGTG 58.557 38.462 0.00 0.00 0.00 3.51
2907 3122 7.702772 CGGATGTATATAGACATACTTTGGAGC 59.297 40.741 18.29 2.27 40.18 4.70
2974 3191 5.740290 TTCTCATCTACTCCCTTCGTTTT 57.260 39.130 0.00 0.00 0.00 2.43
3126 3344 3.276857 ACATGCATGACTTGAGGATGTC 58.723 45.455 32.75 0.00 0.00 3.06
3191 3409 0.737219 GCATGACTTGATGAGGTGGC 59.263 55.000 0.00 0.00 0.00 5.01
3222 3440 2.350804 CGTGCATGAATTGAGTCTCCTG 59.649 50.000 0.00 0.00 0.00 3.86
3242 3460 8.920665 TCATAAATTTTTAACTTGCCAATGTCG 58.079 29.630 0.00 0.00 0.00 4.35
3343 3561 9.539825 ACTTAACACAATGCAATCATTAACAAA 57.460 25.926 0.00 0.00 40.74 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.