Multiple sequence alignment - TraesCS4B01G049700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G049700 chr4B 100.000 4322 0 0 1 4322 38029386 38025065 0.000000e+00 7982.0
1 TraesCS4B01G049700 chr4B 90.441 544 35 13 3407 3935 9948276 9948817 0.000000e+00 701.0
2 TraesCS4B01G049700 chr4B 100.000 148 0 0 4740 4887 38024647 38024500 1.730000e-69 274.0
3 TraesCS4B01G049700 chr4B 95.283 106 2 2 2340 2445 9948089 9947987 1.090000e-36 165.0
4 TraesCS4B01G049700 chr7A 92.527 4148 180 46 1 4087 32634001 32629923 0.000000e+00 5823.0
5 TraesCS4B01G049700 chr7D 93.979 3355 115 45 782 4098 32609923 32606618 0.000000e+00 4996.0
6 TraesCS4B01G049700 chr7D 91.702 470 31 4 1 462 32620344 32619875 0.000000e+00 645.0
7 TraesCS4B01G049700 chr7D 87.906 339 21 4 443 780 32611159 32610840 9.930000e-102 381.0
8 TraesCS4B01G049700 chr4A 93.242 3374 118 48 700 4018 692386234 692382916 0.000000e+00 4867.0
9 TraesCS4B01G049700 chr4A 89.757 576 47 2 1 575 692390147 692389583 0.000000e+00 726.0
10 TraesCS4B01G049700 chr4A 92.941 170 9 3 4110 4276 292272023 292272192 1.360000e-60 244.0
11 TraesCS4B01G049700 chr4A 92.353 170 10 3 4110 4276 244230028 244230197 6.320000e-59 239.0
12 TraesCS4B01G049700 chr4A 93.293 164 8 3 4109 4269 714441625 714441788 6.320000e-59 239.0
13 TraesCS4B01G049700 chr4A 89.831 177 15 1 3677 3850 597837387 597837211 1.770000e-54 224.0
14 TraesCS4B01G049700 chr4A 93.750 112 4 2 3287 3395 597837505 597837394 1.090000e-36 165.0
15 TraesCS4B01G049700 chr4A 82.550 149 23 3 389 535 739026115 739025968 1.430000e-25 128.0
16 TraesCS4B01G049700 chr4A 93.827 81 5 0 1869 1949 687562684 687562604 6.640000e-24 122.0
17 TraesCS4B01G049700 chr4A 94.366 71 4 0 638 708 692389508 692389438 5.170000e-20 110.0
18 TraesCS4B01G049700 chr4D 96.623 2961 37 20 1172 4111 25695632 25692714 0.000000e+00 4855.0
19 TraesCS4B01G049700 chr4D 92.391 736 34 6 3387 4111 5685337 5686061 0.000000e+00 1029.0
20 TraesCS4B01G049700 chr4D 84.539 1106 72 38 1676 2754 5684301 5685334 0.000000e+00 1003.0
21 TraesCS4B01G049700 chr4D 96.266 616 16 3 510 1119 25696493 25695879 0.000000e+00 1003.0
22 TraesCS4B01G049700 chr4D 93.458 535 34 1 1 534 25696960 25696426 0.000000e+00 793.0
23 TraesCS4B01G049700 chr4D 84.770 499 42 22 1067 1539 5683735 5684225 2.060000e-128 470.0
24 TraesCS4B01G049700 chr4D 91.391 151 3 4 4740 4887 25692614 25692471 1.070000e-46 198.0
25 TraesCS4B01G049700 chr6B 94.829 1605 58 15 1676 3270 626213761 626215350 0.000000e+00 2481.0
26 TraesCS4B01G049700 chr6B 90.659 835 61 13 3271 4098 626216565 626217389 0.000000e+00 1094.0
27 TraesCS4B01G049700 chr6B 86.054 294 23 11 963 1252 626212036 626212315 2.860000e-77 300.0
28 TraesCS4B01G049700 chr6B 83.721 301 29 15 1258 1539 626213386 626213685 2.900000e-67 267.0
29 TraesCS4B01G049700 chr3A 78.861 790 119 29 3067 3831 651640693 651639927 1.580000e-134 490.0
30 TraesCS4B01G049700 chr3B 79.216 587 81 21 2749 3309 680750527 680751098 2.150000e-98 370.0
31 TraesCS4B01G049700 chr3B 81.798 456 53 16 2149 2597 680749907 680750339 6.020000e-94 355.0
32 TraesCS4B01G049700 chr3B 95.122 164 5 3 4110 4270 716149098 716148935 6.280000e-64 255.0
33 TraesCS4B01G049700 chr3B 82.105 190 29 3 953 1140 680748837 680749023 1.820000e-34 158.0
34 TraesCS4B01G049700 chr3B 81.928 83 13 2 284 365 725636487 725636568 8.780000e-08 69.4
35 TraesCS4B01G049700 chr5B 93.939 165 7 3 4109 4270 145478645 145478809 3.780000e-61 246.0
36 TraesCS4B01G049700 chr5B 93.252 163 8 3 4110 4269 36485589 36485427 2.270000e-58 237.0
37 TraesCS4B01G049700 chr5B 93.252 163 8 3 4110 4269 36489251 36489089 2.270000e-58 237.0
38 TraesCS4B01G049700 chr5B 93.252 163 8 3 4110 4269 36491085 36490923 2.270000e-58 237.0
39 TraesCS4B01G049700 chr5B 82.500 80 10 3 294 370 426983551 426983473 3.160000e-07 67.6
40 TraesCS4B01G049700 chr2A 91.765 170 11 3 4110 4276 376357623 376357454 2.940000e-57 233.0
41 TraesCS4B01G049700 chr7B 93.827 81 5 0 1869 1949 747303738 747303658 6.640000e-24 122.0
42 TraesCS4B01G049700 chr7B 82.143 84 11 4 284 365 516345434 516345515 8.780000e-08 69.4
43 TraesCS4B01G049700 chr1B 94.872 78 4 0 1869 1946 35096862 35096939 6.640000e-24 122.0
44 TraesCS4B01G049700 chr1D 89.744 78 6 2 1464 1539 145884659 145884736 1.120000e-16 99.0
45 TraesCS4B01G049700 chr3D 79.310 87 14 3 289 373 526168898 526168814 1.900000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G049700 chr4B 38024500 38029386 4886 True 4128.000000 7982 100.000000 1 4887 2 chr4B.!!$R2 4886
1 TraesCS4B01G049700 chr4B 9948276 9948817 541 False 701.000000 701 90.441000 3407 3935 1 chr4B.!!$F1 528
2 TraesCS4B01G049700 chr7A 32629923 32634001 4078 True 5823.000000 5823 92.527000 1 4087 1 chr7A.!!$R1 4086
3 TraesCS4B01G049700 chr7D 32606618 32611159 4541 True 2688.500000 4996 90.942500 443 4098 2 chr7D.!!$R2 3655
4 TraesCS4B01G049700 chr4A 692382916 692390147 7231 True 1901.000000 4867 92.455000 1 4018 3 chr4A.!!$R4 4017
5 TraesCS4B01G049700 chr4D 25692471 25696960 4489 True 1712.250000 4855 94.434500 1 4887 4 chr4D.!!$R1 4886
6 TraesCS4B01G049700 chr4D 5683735 5686061 2326 False 834.000000 1029 87.233333 1067 4111 3 chr4D.!!$F1 3044
7 TraesCS4B01G049700 chr6B 626212036 626217389 5353 False 1035.500000 2481 88.815750 963 4098 4 chr6B.!!$F1 3135
8 TraesCS4B01G049700 chr3A 651639927 651640693 766 True 490.000000 490 78.861000 3067 3831 1 chr3A.!!$R1 764
9 TraesCS4B01G049700 chr3B 680748837 680751098 2261 False 294.333333 370 81.039667 953 3309 3 chr3B.!!$F2 2356
10 TraesCS4B01G049700 chr5B 36485427 36491085 5658 True 237.000000 237 93.252000 4110 4269 3 chr5B.!!$R2 159

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
988 5273 0.745486 TCCAATCCGCGACTCGACTA 60.745 55.000 8.23 0.00 41.67 2.59 F
1834 7477 3.391665 CTCGAGGATGTGGTGGGGC 62.392 68.421 3.91 0.00 0.00 5.80 F
3050 8843 0.598562 CATCATCGGAGGAGTACCCG 59.401 60.000 0.00 2.22 46.57 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2029 7693 1.338484 GCAGCATCAGAGGTCAAGTCA 60.338 52.381 0.00 0.00 0.00 3.41 R
3804 10846 1.099689 ACAGTGGGTGAAACAAACGG 58.900 50.000 0.00 0.00 39.98 4.44 R
4782 17354 0.458669 TACCGTAGCTTAGCTGGCAC 59.541 55.000 17.97 6.26 40.10 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 117 2.105821 TGTCTCGGTGGACCTTTGAAAT 59.894 45.455 0.00 0.00 35.54 2.17
129 131 6.405278 CCTTTGAAATAAGGTCCTTGTTGT 57.595 37.500 14.84 5.15 39.89 3.32
146 148 2.888414 GTTGTAAAGCCCCTAAGCACAA 59.112 45.455 0.00 0.00 34.23 3.33
181 183 2.365293 GTTGCAAAGGTCCTTGATTGGT 59.635 45.455 4.45 0.00 0.00 3.67
189 191 2.593026 GTCCTTGATTGGTTGGGTCAA 58.407 47.619 0.00 0.00 0.00 3.18
258 260 6.073222 GCGGACGATCTAATTGGTTTATCATT 60.073 38.462 0.00 0.00 0.00 2.57
272 274 3.487202 CATTGGGTCGGACGCGTG 61.487 66.667 20.70 15.66 33.25 5.34
399 401 1.174783 CGTATATGTAGGCCCGAGCT 58.825 55.000 0.00 0.00 39.73 4.09
428 430 9.045223 GCCAGAGAAACTAAAAACATCAATTTT 57.955 29.630 0.00 0.00 33.13 1.82
474 476 5.468746 CCGTGTAAATCGACATATTTCCCAT 59.531 40.000 0.00 0.00 31.63 4.00
476 478 6.142817 GTGTAAATCGACATATTTCCCATGC 58.857 40.000 0.00 0.00 31.63 4.06
481 483 2.733552 CGACATATTTCCCATGCTCGAG 59.266 50.000 8.45 8.45 33.08 4.04
485 487 1.639635 ATTTCCCATGCTCGAGCCCT 61.640 55.000 33.23 18.67 41.18 5.19
486 488 2.541547 TTTCCCATGCTCGAGCCCTG 62.542 60.000 33.23 27.54 41.18 4.45
502 504 1.695893 CCTGCCTGACATACGCAACG 61.696 60.000 0.00 0.00 30.85 4.10
504 506 1.740296 GCCTGACATACGCAACGGT 60.740 57.895 0.00 0.00 0.00 4.83
588 674 2.281208 CCCGAACACAAAGCCCGA 60.281 61.111 0.00 0.00 0.00 5.14
647 763 1.330655 ATGCCCAGGTCTAGTCCGTG 61.331 60.000 0.04 0.43 0.00 4.94
988 5273 0.745486 TCCAATCCGCGACTCGACTA 60.745 55.000 8.23 0.00 41.67 2.59
1204 5693 6.455780 GCTCGCATCTTTTCTAGGTTTTAGTC 60.456 42.308 0.00 0.00 0.00 2.59
1544 7147 4.402616 TGGTGAGGGGATTTTGATTCTT 57.597 40.909 0.00 0.00 0.00 2.52
1552 7170 5.716703 AGGGGATTTTGATTCTTTGTGTAGG 59.283 40.000 0.00 0.00 0.00 3.18
1659 7277 4.201812 GGTTGATGTGTGATGTGGTTATCG 60.202 45.833 0.00 0.00 0.00 2.92
1834 7477 3.391665 CTCGAGGATGTGGTGGGGC 62.392 68.421 3.91 0.00 0.00 5.80
1900 7550 8.721019 TTTTACTTTAGGAGTTTCAGTCGAAA 57.279 30.769 0.00 0.00 39.86 3.46
2264 7943 3.788227 TGCTCTGGTCTTGTGGTTATT 57.212 42.857 0.00 0.00 0.00 1.40
2422 8101 5.300792 TGGACACATGGTTAGTTCCTTTTTC 59.699 40.000 0.00 0.00 0.00 2.29
2423 8102 5.535030 GGACACATGGTTAGTTCCTTTTTCT 59.465 40.000 0.00 0.00 0.00 2.52
2424 8103 6.040504 GGACACATGGTTAGTTCCTTTTTCTT 59.959 38.462 0.00 0.00 0.00 2.52
2586 8357 7.158697 GGTTTTCTTTGGGCATAATAAGTTGT 58.841 34.615 0.00 0.00 0.00 3.32
2607 8378 9.744468 AGTTGTCAAATGAGTTAAACCAAATAC 57.256 29.630 0.00 0.00 0.00 1.89
2608 8379 9.744468 GTTGTCAAATGAGTTAAACCAAATACT 57.256 29.630 0.00 0.00 0.00 2.12
2609 8380 9.743057 TTGTCAAATGAGTTAAACCAAATACTG 57.257 29.630 0.00 0.00 0.00 2.74
2613 8384 9.341899 CAAATGAGTTAAACCAAATACTGTAGC 57.658 33.333 0.00 0.00 0.00 3.58
2659 8430 6.223120 AGTTTTTGGGTTAATCTTGCATGAC 58.777 36.000 4.14 0.00 0.00 3.06
2910 8682 7.490962 TTTATATGCCTGGTTTATCAAGTCG 57.509 36.000 0.00 0.00 0.00 4.18
3050 8843 0.598562 CATCATCGGAGGAGTACCCG 59.401 60.000 0.00 2.22 46.57 5.28
3495 10516 3.128764 GGAGGTAAAGTAACATGCCTTGC 59.871 47.826 0.00 0.00 31.26 4.01
3514 10538 1.675641 GCTCCCGGTGTGAATTGCT 60.676 57.895 0.00 0.00 0.00 3.91
3794 10836 2.826128 CCCTGTGACTCAGCTGTACTAA 59.174 50.000 14.67 0.00 42.38 2.24
3804 10846 8.770828 TGACTCAGCTGTACTAATTTGTTAAAC 58.229 33.333 14.67 0.00 0.00 2.01
4037 11110 4.021719 CAGAGCCTTTCATTCACAATGGTT 60.022 41.667 0.00 0.00 39.38 3.67
4127 11200 5.652324 ACATATACTCCCTCCGTTCCTAAT 58.348 41.667 0.00 0.00 0.00 1.73
4128 11201 6.797707 ACATATACTCCCTCCGTTCCTAATA 58.202 40.000 0.00 0.00 0.00 0.98
4130 11203 7.731688 ACATATACTCCCTCCGTTCCTAATAAA 59.268 37.037 0.00 0.00 0.00 1.40
4175 16747 4.442706 AGACTACATACGGAGCAAAATGG 58.557 43.478 0.00 0.00 0.00 3.16
4790 17362 4.743057 AAAAGAAGAAAAAGTGCCAGCT 57.257 36.364 0.00 0.00 0.00 4.24
4791 17363 5.852282 AAAAGAAGAAAAAGTGCCAGCTA 57.148 34.783 0.00 0.00 0.00 3.32
4826 17398 2.460757 ATCATTTGCCCAGTTTGCAC 57.539 45.000 0.00 0.00 38.72 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 0.535335 GTCTCGGCCATAGAACACCA 59.465 55.000 2.24 0.00 0.00 4.17
68 70 3.628989 CCGAGATAGGCCACACCA 58.371 61.111 5.01 0.00 43.14 4.17
115 117 3.499021 GGGGCTTTACAACAAGGACCTTA 60.499 47.826 6.38 0.00 0.00 2.69
129 131 2.961531 TGTTGTGCTTAGGGGCTTTA 57.038 45.000 0.00 0.00 0.00 1.85
146 148 2.768253 TGCAACAGCTACTAGCATGT 57.232 45.000 10.73 8.63 45.56 3.21
181 183 2.158593 TCCGTCCAATCTTTTGACCCAA 60.159 45.455 0.00 0.00 34.60 4.12
189 191 2.819608 CCAACACATCCGTCCAATCTTT 59.180 45.455 0.00 0.00 0.00 2.52
315 317 2.750237 GTGCTTTGGTAGGCCCGG 60.750 66.667 0.00 0.00 35.15 5.73
399 401 3.811083 TGTTTTTAGTTTCTCTGGCCGA 58.189 40.909 0.00 0.00 0.00 5.54
405 407 9.546428 CCCAAAATTGATGTTTTTAGTTTCTCT 57.454 29.630 0.00 0.00 0.00 3.10
406 408 8.282592 GCCCAAAATTGATGTTTTTAGTTTCTC 58.717 33.333 0.00 0.00 0.00 2.87
459 461 2.364002 TCGAGCATGGGAAATATGTCGA 59.636 45.455 0.00 0.00 36.60 4.20
460 462 2.733552 CTCGAGCATGGGAAATATGTCG 59.266 50.000 0.00 0.00 34.00 4.35
476 478 1.395045 TATGTCAGGCAGGGCTCGAG 61.395 60.000 8.45 8.45 0.00 4.04
481 483 2.897350 GCGTATGTCAGGCAGGGC 60.897 66.667 0.00 0.00 37.96 5.19
485 487 1.739929 CCGTTGCGTATGTCAGGCA 60.740 57.895 0.00 0.00 45.90 4.75
486 488 1.296056 AACCGTTGCGTATGTCAGGC 61.296 55.000 0.00 0.00 38.55 4.85
502 504 2.683362 CTCGGGCCTAGAAATTTGAACC 59.317 50.000 0.84 0.00 0.00 3.62
504 506 2.365582 GCTCGGGCCTAGAAATTTGAA 58.634 47.619 9.63 0.00 0.00 2.69
570 656 2.593436 CGGGCTTTGTGTTCGGGT 60.593 61.111 0.00 0.00 0.00 5.28
588 674 3.182996 AGCCCAGAAAACCCGGGT 61.183 61.111 24.16 24.16 42.44 5.28
647 763 8.652810 TTACGAAATCTATTAACCCAACTAGC 57.347 34.615 0.00 0.00 0.00 3.42
716 4044 2.658224 CGCGAAAAACAACAGGTAGACG 60.658 50.000 0.00 0.00 0.00 4.18
723 4051 2.792749 AGGAAACGCGAAAAACAACAG 58.207 42.857 15.93 0.00 0.00 3.16
912 5181 0.318762 ATCGAGGCGGAAGATTAGGC 59.681 55.000 0.00 0.00 0.00 3.93
1237 5726 2.766229 GACCTCTCCCTCCCCAGC 60.766 72.222 0.00 0.00 0.00 4.85
1238 5727 2.041405 GGACCTCTCCCTCCCCAG 60.041 72.222 0.00 0.00 0.00 4.45
1239 5728 2.257541 GATGGACCTCTCCCTCCCCA 62.258 65.000 0.00 0.00 35.34 4.96
1572 7190 9.996554 TCACCGACACAATCTTCATATATATTT 57.003 29.630 0.00 0.00 0.00 1.40
1573 7191 9.645059 CTCACCGACACAATCTTCATATATATT 57.355 33.333 0.00 0.00 0.00 1.28
1659 7277 2.614983 TCAGACAGCGTTACAAAAACCC 59.385 45.455 0.00 0.00 0.00 4.11
1834 7477 1.806542 AGTGTTAGGCGTGCAAAGATG 59.193 47.619 0.00 0.00 0.00 2.90
1900 7550 6.736110 AAAATTCATATATGGCTGCAACCT 57.264 33.333 12.78 0.00 0.00 3.50
2029 7693 1.338484 GCAGCATCAGAGGTCAAGTCA 60.338 52.381 0.00 0.00 0.00 3.41
2082 7748 7.274447 TGCAACATAGTGATATCTGAATGACA 58.726 34.615 14.60 9.07 0.00 3.58
2264 7943 7.366847 AGATTTAGTGGCTGCTCTATTAAGA 57.633 36.000 0.00 0.00 0.00 2.10
2422 8101 6.720012 AAACAACTGCAAAGTGGTAAAAAG 57.280 33.333 0.00 0.00 0.00 2.27
2423 8102 6.931840 AGAAAACAACTGCAAAGTGGTAAAAA 59.068 30.769 0.00 0.00 0.00 1.94
2424 8103 6.459923 AGAAAACAACTGCAAAGTGGTAAAA 58.540 32.000 0.00 0.00 0.00 1.52
2605 8376 7.254658 GCAAGACTAACACAAAAAGCTACAGTA 60.255 37.037 0.00 0.00 0.00 2.74
2606 8377 6.458342 GCAAGACTAACACAAAAAGCTACAGT 60.458 38.462 0.00 0.00 0.00 3.55
2607 8378 5.909610 GCAAGACTAACACAAAAAGCTACAG 59.090 40.000 0.00 0.00 0.00 2.74
2608 8379 5.355630 TGCAAGACTAACACAAAAAGCTACA 59.644 36.000 0.00 0.00 0.00 2.74
2609 8380 5.816919 TGCAAGACTAACACAAAAAGCTAC 58.183 37.500 0.00 0.00 0.00 3.58
2613 8384 6.498304 ACTCATGCAAGACTAACACAAAAAG 58.502 36.000 0.00 0.00 0.00 2.27
3050 8843 1.777272 AGAAGGTTAGCCCCCATGATC 59.223 52.381 0.00 0.00 34.57 2.92
3473 10489 3.128764 GCAAGGCATGTTACTTTACCTCC 59.871 47.826 0.00 0.00 0.00 4.30
3495 10516 3.039202 GCAATTCACACCGGGAGCG 62.039 63.158 6.32 0.00 0.00 5.03
3514 10538 4.468510 ACACGGGGAGTCATAATAACTCAA 59.531 41.667 5.71 0.00 44.03 3.02
3804 10846 1.099689 ACAGTGGGTGAAACAAACGG 58.900 50.000 0.00 0.00 39.98 4.44
4102 11175 5.070823 AGGAACGGAGGGAGTATATGTTA 57.929 43.478 0.00 0.00 0.00 2.41
4113 11186 7.640597 AAAAAGATTTATTAGGAACGGAGGG 57.359 36.000 0.00 0.00 0.00 4.30
4152 16724 4.876107 CCATTTTGCTCCGTATGTAGTCTT 59.124 41.667 0.00 0.00 0.00 3.01
4175 16747 6.932947 ACATAGTTTAGAGTGTAGGTTCACC 58.067 40.000 0.00 0.00 38.91 4.02
4240 16812 7.529555 TCCCTCCGTTCCTAAATATAAGTCTA 58.470 38.462 0.00 0.00 0.00 2.59
4291 16863 5.106197 TGTCCTGTTTGCTGCAAATATGTAG 60.106 40.000 28.21 19.60 41.69 2.74
4292 16864 4.764308 TGTCCTGTTTGCTGCAAATATGTA 59.236 37.500 28.21 14.13 35.74 2.29
4293 16865 3.573538 TGTCCTGTTTGCTGCAAATATGT 59.426 39.130 28.21 0.00 35.74 2.29
4294 16866 4.177165 TGTCCTGTTTGCTGCAAATATG 57.823 40.909 28.21 21.93 35.74 1.78
4295 16867 4.463539 TCATGTCCTGTTTGCTGCAAATAT 59.536 37.500 28.21 9.69 35.74 1.28
4296 16868 3.825585 TCATGTCCTGTTTGCTGCAAATA 59.174 39.130 28.21 24.31 35.74 1.40
4297 16869 2.629137 TCATGTCCTGTTTGCTGCAAAT 59.371 40.909 28.21 9.91 35.74 2.32
4773 17345 3.254411 AGCTTAGCTGGCACTTTTTCTTC 59.746 43.478 5.70 0.00 37.57 2.87
4782 17354 0.458669 TACCGTAGCTTAGCTGGCAC 59.541 55.000 17.97 6.26 40.10 5.01
4787 17359 6.401047 TGATTATTGTACCGTAGCTTAGCT 57.599 37.500 12.67 12.67 43.41 3.32
4788 17360 7.653767 AATGATTATTGTACCGTAGCTTAGC 57.346 36.000 0.00 0.00 0.00 3.09
4789 17361 8.009974 GCAAATGATTATTGTACCGTAGCTTAG 58.990 37.037 0.00 0.00 0.00 2.18
4790 17362 7.041644 GGCAAATGATTATTGTACCGTAGCTTA 60.042 37.037 0.00 0.00 0.00 3.09
4791 17363 6.238648 GGCAAATGATTATTGTACCGTAGCTT 60.239 38.462 0.00 0.00 0.00 3.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.