Multiple sequence alignment - TraesCS4B01G048100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G048100 chr4B 100.000 3032 0 0 1 3032 36014977 36011946 0.000000e+00 5600.0
1 TraesCS4B01G048100 chr4B 89.481 1521 98 23 678 2164 35912751 35911259 0.000000e+00 1866.0
2 TraesCS4B01G048100 chr4B 88.676 1254 105 12 921 2165 37084545 37085770 0.000000e+00 1495.0
3 TraesCS4B01G048100 chr4B 86.704 1241 109 25 915 2129 37077168 37078378 0.000000e+00 1327.0
4 TraesCS4B01G048100 chr4B 85.392 1020 133 7 1124 2129 36184683 36185700 0.000000e+00 1044.0
5 TraesCS4B01G048100 chr4B 86.976 453 51 7 1 448 35914488 35914039 1.250000e-138 503.0
6 TraesCS4B01G048100 chr4B 90.667 225 10 5 457 678 35913005 35912789 3.820000e-74 289.0
7 TraesCS4B01G048100 chr4B 90.909 44 4 0 821 864 37075112 37075155 3.260000e-05 60.2
8 TraesCS4B01G048100 chr4D 88.569 2117 155 25 964 3032 25159509 25161586 0.000000e+00 2488.0
9 TraesCS4B01G048100 chr4D 90.054 1478 91 28 718 2152 23482990 23481526 0.000000e+00 1864.0
10 TraesCS4B01G048100 chr4D 90.074 403 32 5 53 448 23483750 23483349 1.610000e-142 516.0
11 TraesCS4B01G048100 chr4D 77.842 871 158 20 1167 2009 25363859 25362996 9.700000e-140 507.0
12 TraesCS4B01G048100 chr4D 86.325 234 17 6 452 680 23483314 23483091 1.090000e-59 241.0
13 TraesCS4B01G048100 chr4A 91.147 1299 81 10 874 2164 578392753 578394025 0.000000e+00 1731.0
14 TraesCS4B01G048100 chr4A 89.274 1212 98 9 964 2165 578383500 578382311 0.000000e+00 1489.0
15 TraesCS4B01G048100 chr4A 86.181 796 61 23 2272 3032 578382255 578381474 0.000000e+00 815.0
16 TraesCS4B01G048100 chr4A 78.657 834 143 20 1167 1972 578176052 578175226 3.460000e-144 521.0
17 TraesCS4B01G048100 chr4A 89.826 403 33 1 54 448 578389794 578390196 7.500000e-141 510.0
18 TraesCS4B01G048100 chr4A 93.151 146 8 1 718 861 578390530 578390675 2.370000e-51 213.0
19 TraesCS4B01G048100 chr4A 88.889 90 7 3 2603 2690 332023652 332023564 1.150000e-19 108.0
20 TraesCS4B01G048100 chr4A 100.000 40 0 0 679 718 578390465 578390504 1.170000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G048100 chr4B 36011946 36014977 3031 True 5600.000000 5600 100.000000 1 3032 1 chr4B.!!$R1 3031
1 TraesCS4B01G048100 chr4B 37084545 37085770 1225 False 1495.000000 1495 88.676000 921 2165 1 chr4B.!!$F2 1244
2 TraesCS4B01G048100 chr4B 36184683 36185700 1017 False 1044.000000 1044 85.392000 1124 2129 1 chr4B.!!$F1 1005
3 TraesCS4B01G048100 chr4B 35911259 35914488 3229 True 886.000000 1866 89.041333 1 2164 3 chr4B.!!$R2 2163
4 TraesCS4B01G048100 chr4B 37075112 37078378 3266 False 693.600000 1327 88.806500 821 2129 2 chr4B.!!$F3 1308
5 TraesCS4B01G048100 chr4D 25159509 25161586 2077 False 2488.000000 2488 88.569000 964 3032 1 chr4D.!!$F1 2068
6 TraesCS4B01G048100 chr4D 23481526 23483750 2224 True 873.666667 1864 88.817667 53 2152 3 chr4D.!!$R2 2099
7 TraesCS4B01G048100 chr4D 25362996 25363859 863 True 507.000000 507 77.842000 1167 2009 1 chr4D.!!$R1 842
8 TraesCS4B01G048100 chr4A 578381474 578383500 2026 True 1152.000000 1489 87.727500 964 3032 2 chr4A.!!$R3 2068
9 TraesCS4B01G048100 chr4A 578389794 578394025 4231 False 632.250000 1731 93.531000 54 2164 4 chr4A.!!$F1 2110
10 TraesCS4B01G048100 chr4A 578175226 578176052 826 True 521.000000 521 78.657000 1167 1972 1 chr4A.!!$R2 805

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
636 1679 0.108186 TAATCACCAGCACTCCAGCG 60.108 55.0 0.0 0.0 40.15 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2359 6589 0.240411 GACTGCGACAACTCTACCGT 59.76 55.0 0.0 0.0 0.0 4.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.129871 TCCAAATAAAACGAACGTCCGT 58.870 40.909 0.00 0.00 45.64 4.69
36 37 3.841624 ACGAACGTCCGTTTTAAAGTC 57.158 42.857 0.00 0.00 40.17 3.01
37 38 2.216263 ACGAACGTCCGTTTTAAAGTCG 59.784 45.455 0.00 6.42 40.17 4.18
38 39 2.408865 CGAACGTCCGTTTTAAAGTCGG 60.409 50.000 20.44 20.44 44.76 4.79
39 40 2.223537 ACGTCCGTTTTAAAGTCGGT 57.776 45.000 23.33 10.01 43.94 4.69
44 45 2.613133 TCCGTTTTAAAGTCGGTGGTTG 59.387 45.455 23.33 6.87 43.94 3.77
67 69 4.141251 GGAGTTGGCCTAAGGATCCAATTA 60.141 45.833 15.82 3.83 41.35 1.40
114 116 5.472137 GGAGCTAGACTGTACTCAGATAAGG 59.528 48.000 0.00 0.00 43.76 2.69
123 125 8.783660 ACTGTACTCAGATAAGGGATCATTAA 57.216 34.615 2.17 0.00 43.76 1.40
208 210 4.634184 ACGTCAGTAGACCACATCATAC 57.366 45.455 0.00 0.00 41.87 2.39
211 213 4.498177 CGTCAGTAGACCACATCATACCTG 60.498 50.000 0.00 0.00 41.87 4.00
215 220 4.646945 AGTAGACCACATCATACCTGACAG 59.353 45.833 0.00 0.00 33.22 3.51
217 222 4.096681 AGACCACATCATACCTGACAGAA 58.903 43.478 3.32 0.00 33.22 3.02
220 225 4.225942 ACCACATCATACCTGACAGAACAT 59.774 41.667 3.32 0.00 33.22 2.71
221 226 4.573607 CCACATCATACCTGACAGAACATG 59.426 45.833 3.32 4.49 33.22 3.21
225 230 3.118629 TCATACCTGACAGAACATGAGCC 60.119 47.826 3.32 0.00 0.00 4.70
228 233 1.277273 CCTGACAGAACATGAGCCTCA 59.723 52.381 3.32 0.00 0.00 3.86
229 234 2.289882 CCTGACAGAACATGAGCCTCAA 60.290 50.000 3.32 0.00 0.00 3.02
295 300 1.028330 ATTGATGGCGTGCTGAGGTG 61.028 55.000 0.00 0.00 0.00 4.00
448 461 2.890808 TCTTGATATTTCGGCTCGCT 57.109 45.000 0.00 0.00 0.00 4.93
450 463 2.100749 TCTTGATATTTCGGCTCGCTGA 59.899 45.455 0.00 0.00 0.00 4.26
451 464 2.820059 TGATATTTCGGCTCGCTGAT 57.180 45.000 0.63 0.00 0.00 2.90
452 465 3.111853 TGATATTTCGGCTCGCTGATT 57.888 42.857 0.63 0.00 0.00 2.57
453 466 3.466836 TGATATTTCGGCTCGCTGATTT 58.533 40.909 0.63 0.00 0.00 2.17
454 467 4.627058 TGATATTTCGGCTCGCTGATTTA 58.373 39.130 0.63 0.00 0.00 1.40
455 468 4.686091 TGATATTTCGGCTCGCTGATTTAG 59.314 41.667 0.63 0.00 0.00 1.85
456 469 2.380084 TTTCGGCTCGCTGATTTAGT 57.620 45.000 0.63 0.00 0.00 2.24
460 473 3.852286 TCGGCTCGCTGATTTAGTAAAA 58.148 40.909 0.00 0.00 0.00 1.52
507 1547 1.227999 ACTCGCGGGTGTTGACAATG 61.228 55.000 12.89 0.00 0.00 2.82
508 1548 1.911293 CTCGCGGGTGTTGACAATGG 61.911 60.000 6.13 0.00 0.00 3.16
509 1549 2.258013 CGCGGGTGTTGACAATGGT 61.258 57.895 0.00 0.00 0.00 3.55
510 1550 1.579429 GCGGGTGTTGACAATGGTC 59.421 57.895 0.00 0.00 44.57 4.02
565 1605 4.566004 CTCCTCCACGTCAGTTGATTAAA 58.434 43.478 0.00 0.00 0.00 1.52
636 1679 0.108186 TAATCACCAGCACTCCAGCG 60.108 55.000 0.00 0.00 40.15 5.18
731 1863 2.976490 ATGCCTGGCTGACCTGTCC 61.976 63.158 21.03 0.00 36.63 4.02
757 1889 1.210155 CAAGTACAAAGCGCAGGGC 59.790 57.895 11.47 0.00 44.05 5.19
783 1924 3.119316 ACTCGCTGGAGAAGTAGAATGTG 60.119 47.826 0.00 0.00 43.27 3.21
885 5016 3.254060 CAACACGTATAAGTGAGCTGCT 58.746 45.455 23.14 0.00 44.43 4.24
892 5023 0.610174 TAAGTGAGCTGCTGGTCTGG 59.390 55.000 21.21 0.00 40.98 3.86
914 5045 1.888512 TCATCTTCACAAGCCAAAGCC 59.111 47.619 0.00 0.00 41.25 4.35
915 5046 1.614903 CATCTTCACAAGCCAAAGCCA 59.385 47.619 0.00 0.00 41.25 4.75
927 5058 2.224042 GCCAAAGCCAAAGTAAAGCAGT 60.224 45.455 0.00 0.00 0.00 4.40
960 5091 0.738975 TCAGATCACTCGGCTTACGG 59.261 55.000 0.00 0.00 44.45 4.02
1014 5149 2.103373 AGACACATGGCTCTGATACGT 58.897 47.619 0.00 0.00 0.00 3.57
1050 5185 2.555547 GCTGCACCTTTCGTTGCCT 61.556 57.895 0.00 0.00 0.00 4.75
1089 5224 3.764466 CAGGAGCTCGGCGTCCTT 61.764 66.667 14.17 0.00 41.57 3.36
1194 5329 1.079750 GGCCGACTTCGAGAAGCTT 60.080 57.895 12.32 0.00 41.99 3.74
2035 6209 1.335597 CCTCGTCTTCGTTGTAGTGCA 60.336 52.381 0.00 0.00 38.33 4.57
2076 6262 3.667282 GCAGGGCCATGCGCATAG 61.667 66.667 28.54 18.03 44.06 2.23
2077 6263 2.981909 CAGGGCCATGCGCATAGG 60.982 66.667 24.84 25.19 44.06 2.57
2078 6264 3.170672 AGGGCCATGCGCATAGGA 61.171 61.111 30.62 4.99 44.06 2.94
2111 6308 5.973899 TCAATTTTGCTAGCCATGTACAA 57.026 34.783 13.29 0.00 0.00 2.41
2130 6339 1.605753 ATGCCATGTATGCAGAGCAG 58.394 50.000 14.23 0.00 43.65 4.24
2138 6350 3.004862 TGTATGCAGAGCAGAACACATG 58.995 45.455 0.00 0.00 43.65 3.21
2142 6355 2.299867 TGCAGAGCAGAACACATGAGTA 59.700 45.455 0.00 0.00 33.32 2.59
2143 6356 2.928757 GCAGAGCAGAACACATGAGTAG 59.071 50.000 0.00 0.00 0.00 2.57
2144 6357 3.616076 GCAGAGCAGAACACATGAGTAGT 60.616 47.826 0.00 0.00 0.00 2.73
2153 6366 7.063544 GCAGAACACATGAGTAGTTAGTTTAGG 59.936 40.741 0.00 0.00 0.00 2.69
2188 6418 3.814842 CAGACACTGGTGATGTTTTAGCA 59.185 43.478 7.78 0.00 0.00 3.49
2193 6423 4.925054 CACTGGTGATGTTTTAGCATTTGG 59.075 41.667 0.00 0.00 0.00 3.28
2204 6434 4.502105 TTAGCATTTGGGACTAGATGCA 57.498 40.909 12.39 0.00 45.47 3.96
2220 6450 2.740668 GCATTTTGCATCACGGTGG 58.259 52.632 8.50 0.00 44.26 4.61
2221 6451 0.243365 GCATTTTGCATCACGGTGGA 59.757 50.000 8.50 0.00 44.26 4.02
2222 6452 1.336702 GCATTTTGCATCACGGTGGAA 60.337 47.619 8.50 0.00 44.26 3.53
2223 6453 2.865670 GCATTTTGCATCACGGTGGAAA 60.866 45.455 8.50 0.00 44.26 3.13
2224 6454 2.500509 TTTTGCATCACGGTGGAAAC 57.499 45.000 8.50 0.00 38.81 2.78
2225 6455 0.309302 TTTGCATCACGGTGGAAACG 59.691 50.000 8.50 0.00 35.01 3.60
2226 6456 1.511318 TTGCATCACGGTGGAAACGG 61.511 55.000 8.50 0.00 35.23 4.44
2234 6464 2.096119 CACGGTGGAAACGGATAAACAC 60.096 50.000 0.00 0.00 35.23 3.32
2242 6472 6.477360 GTGGAAACGGATAAACACATGTTTTT 59.523 34.615 14.78 14.05 45.07 1.94
2268 6498 7.883391 TTCCACACCACTGTAAAATAAGAAA 57.117 32.000 0.00 0.00 0.00 2.52
2270 6500 8.472007 TCCACACCACTGTAAAATAAGAAAAT 57.528 30.769 0.00 0.00 0.00 1.82
2290 6520 9.020731 AGAAAATATTACCTTTTGTCCGTCAAT 57.979 29.630 0.00 0.00 35.84 2.57
2347 6577 7.252612 TCAATATGAGACTGTTAAACCCTCA 57.747 36.000 0.00 0.00 38.12 3.86
2353 6583 6.361433 TGAGACTGTTAAACCCTCAATCAAA 58.639 36.000 0.00 0.00 31.72 2.69
2359 6589 7.069331 ACTGTTAAACCCTCAATCAAATCACAA 59.931 33.333 0.00 0.00 0.00 3.33
2368 6598 5.547465 TCAATCAAATCACAACGGTAGAGT 58.453 37.500 0.00 0.00 0.00 3.24
2415 6646 0.467290 ACCCACGGTCTGCACAAATT 60.467 50.000 0.00 0.00 0.00 1.82
2625 6888 7.279313 GCTCCCTTTGTAACGAAATATAAGACA 59.721 37.037 0.00 0.00 0.00 3.41
2927 7206 3.243704 CCCCGCAATAATGTAATTGGGTG 60.244 47.826 11.22 2.20 44.18 4.61
2952 7231 6.374417 ACCTCTTTTACTAAGATTGAGGCA 57.626 37.500 0.00 0.00 42.20 4.75
3014 7293 4.693283 TGTCATTCGTCATTCATACCTCC 58.307 43.478 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.129871 ACGGACGTTCGTTTTATTTGGA 58.870 40.909 18.05 0.00 40.85 3.53
27 28 3.888583 ACTCCAACCACCGACTTTAAAA 58.111 40.909 0.00 0.00 0.00 1.52
30 31 2.485835 CCAACTCCAACCACCGACTTTA 60.486 50.000 0.00 0.00 0.00 1.85
32 33 0.179029 CCAACTCCAACCACCGACTT 60.179 55.000 0.00 0.00 0.00 3.01
33 34 1.450211 CCAACTCCAACCACCGACT 59.550 57.895 0.00 0.00 0.00 4.18
34 35 2.258726 GCCAACTCCAACCACCGAC 61.259 63.158 0.00 0.00 0.00 4.79
35 36 2.112297 GCCAACTCCAACCACCGA 59.888 61.111 0.00 0.00 0.00 4.69
36 37 2.119484 TAGGCCAACTCCAACCACCG 62.119 60.000 5.01 0.00 0.00 4.94
37 38 0.111639 TTAGGCCAACTCCAACCACC 59.888 55.000 5.01 0.00 0.00 4.61
38 39 1.534729 CTTAGGCCAACTCCAACCAC 58.465 55.000 5.01 0.00 0.00 4.16
39 40 0.404040 CCTTAGGCCAACTCCAACCA 59.596 55.000 5.01 0.00 0.00 3.67
44 45 1.213296 TGGATCCTTAGGCCAACTCC 58.787 55.000 14.23 2.55 0.00 3.85
87 89 4.265893 TCTGAGTACAGTCTAGCTCCTTG 58.734 47.826 0.00 0.00 43.81 3.61
114 116 5.350365 TGTTACTGCGTCACTTTAATGATCC 59.650 40.000 0.00 0.00 0.00 3.36
123 125 2.882927 TCAGTGTTACTGCGTCACTT 57.117 45.000 4.14 0.00 45.54 3.16
208 210 1.277273 TGAGGCTCATGTTCTGTCAGG 59.723 52.381 14.43 0.00 0.00 3.86
211 213 3.668447 TCTTTGAGGCTCATGTTCTGTC 58.332 45.455 19.50 0.00 0.00 3.51
215 220 5.747951 CCTAATCTTTGAGGCTCATGTTC 57.252 43.478 19.50 0.00 0.00 3.18
242 247 6.857964 CGCCGCTTTGATCATTTTAATTATCT 59.142 34.615 0.00 0.00 0.00 1.98
332 337 1.024579 AGTTAAAGGGTGATGCGCGG 61.025 55.000 8.83 0.00 34.93 6.46
336 341 2.688446 GGGCTTAGTTAAAGGGTGATGC 59.312 50.000 0.00 0.00 35.58 3.91
463 476 4.573201 AGAATCTCGAGGAAAGAGACGTAG 59.427 45.833 13.56 0.00 46.12 3.51
465 478 3.127895 CAGAATCTCGAGGAAAGAGACGT 59.872 47.826 13.56 0.00 46.12 4.34
507 1547 1.077068 TCCGAATGGCCCATTGACC 60.077 57.895 15.10 0.00 33.90 4.02
508 1548 0.394352 AGTCCGAATGGCCCATTGAC 60.394 55.000 15.10 15.45 33.90 3.18
509 1549 0.394216 CAGTCCGAATGGCCCATTGA 60.394 55.000 15.10 2.75 33.90 2.57
510 1550 0.394216 TCAGTCCGAATGGCCCATTG 60.394 55.000 15.10 6.32 33.90 2.82
511 1551 0.107017 CTCAGTCCGAATGGCCCATT 60.107 55.000 9.17 9.17 36.72 3.16
512 1552 1.528824 CTCAGTCCGAATGGCCCAT 59.471 57.895 0.00 0.00 34.14 4.00
513 1553 2.989639 CTCAGTCCGAATGGCCCA 59.010 61.111 0.00 0.00 34.14 5.36
514 1554 2.514824 GCTCAGTCCGAATGGCCC 60.515 66.667 0.00 0.00 34.14 5.80
565 1605 3.374058 CGTCGGAGATTAACAAGGCATTT 59.626 43.478 0.00 0.00 40.67 2.32
636 1679 2.427506 CAGGATAGAATAAAGCCGCCC 58.572 52.381 0.00 0.00 0.00 6.13
675 1719 4.169508 CGTGGTGTCATTTCTAGACTCTG 58.830 47.826 0.00 0.00 36.94 3.35
731 1863 0.517316 GCTTTGTACTTGCTGGACCG 59.483 55.000 0.00 0.00 0.00 4.79
757 1889 2.750166 TCTACTTCTCCAGCGAGTCTTG 59.250 50.000 0.00 0.00 37.40 3.02
764 1899 1.929836 GCACATTCTACTTCTCCAGCG 59.070 52.381 0.00 0.00 0.00 5.18
783 1924 4.819088 AGTTTTCTTCTCACTTTCTGGAGC 59.181 41.667 0.00 0.00 0.00 4.70
832 1973 2.809446 TCAGCAAATCATAGTCGACCG 58.191 47.619 13.01 0.94 0.00 4.79
885 5016 3.743521 CTTGTGAAGATGAACCAGACCA 58.256 45.455 0.00 0.00 0.00 4.02
892 5023 3.311966 GCTTTGGCTTGTGAAGATGAAC 58.688 45.455 0.00 0.00 35.22 3.18
914 5045 3.748048 TGAGCTGCTACTGCTTTACTTTG 59.252 43.478 0.15 0.00 38.70 2.77
915 5046 3.999663 CTGAGCTGCTACTGCTTTACTTT 59.000 43.478 0.15 0.00 38.70 2.66
927 5058 3.130164 GTGATCTGAGTTCTGAGCTGCTA 59.870 47.826 0.15 0.00 32.53 3.49
960 5091 2.230940 CGATGATCACCGCCGTCAC 61.231 63.158 0.00 0.00 0.00 3.67
967 5098 2.658593 GTCGGCCGATGATCACCG 60.659 66.667 33.58 15.46 46.97 4.94
1303 5442 3.745803 GAGGACGTCGGCCTCGTT 61.746 66.667 30.75 3.29 42.22 3.85
1972 6143 2.749865 CGCATTTCGACACGGGCAT 61.750 57.895 0.00 0.00 41.67 4.40
1975 6146 4.499023 CGCGCATTTCGACACGGG 62.499 66.667 8.75 0.00 41.67 5.28
1977 6148 4.134187 AGCGCGCATTTCGACACG 62.134 61.111 35.10 0.00 41.67 4.49
2022 6193 2.343101 GTATGCCTGCACTACAACGAA 58.657 47.619 0.00 0.00 0.00 3.85
2071 6257 8.725148 CAAAATTGATCCTATGTACTCCTATGC 58.275 37.037 0.00 0.00 0.00 3.14
2076 6262 7.095017 GCTAGCAAAATTGATCCTATGTACTCC 60.095 40.741 10.63 0.00 0.00 3.85
2077 6263 7.095017 GGCTAGCAAAATTGATCCTATGTACTC 60.095 40.741 18.24 0.00 0.00 2.59
2078 6264 6.712547 GGCTAGCAAAATTGATCCTATGTACT 59.287 38.462 18.24 0.00 0.00 2.73
2111 6308 1.142262 TCTGCTCTGCATACATGGCAT 59.858 47.619 0.00 0.00 41.06 4.40
2130 6339 7.609056 TCCCTAAACTAACTACTCATGTGTTC 58.391 38.462 5.63 0.00 0.00 3.18
2138 6350 7.231115 CCTAGGTCATCCCTAAACTAACTACTC 59.769 44.444 0.00 0.00 45.40 2.59
2142 6355 5.851418 ACCTAGGTCATCCCTAAACTAACT 58.149 41.667 9.21 0.00 45.40 2.24
2143 6356 6.159299 GACCTAGGTCATCCCTAAACTAAC 57.841 45.833 32.91 3.78 45.40 2.34
2172 6402 4.220382 TCCCAAATGCTAAAACATCACCAG 59.780 41.667 0.00 0.00 0.00 4.00
2188 6418 5.014808 GCAAAATGCATCTAGTCCCAAAT 57.985 39.130 0.00 0.00 44.26 2.32
2204 6434 2.606795 CGTTTCCACCGTGATGCAAAAT 60.607 45.455 0.00 0.00 0.00 1.82
2217 6447 4.759516 ACATGTGTTTATCCGTTTCCAC 57.240 40.909 0.00 0.00 0.00 4.02
2218 6448 5.776173 AAACATGTGTTTATCCGTTTCCA 57.224 34.783 9.24 0.00 45.47 3.53
2219 6449 8.751302 ATAAAAACATGTGTTTATCCGTTTCC 57.249 30.769 23.01 0.00 46.47 3.13
2221 6451 9.198837 GGAATAAAAACATGTGTTTATCCGTTT 57.801 29.630 26.87 15.97 46.47 3.60
2222 6452 8.361139 TGGAATAAAAACATGTGTTTATCCGTT 58.639 29.630 26.87 16.27 46.47 4.44
2223 6453 7.810759 GTGGAATAAAAACATGTGTTTATCCGT 59.189 33.333 26.87 16.00 46.47 4.69
2224 6454 7.810282 TGTGGAATAAAAACATGTGTTTATCCG 59.190 33.333 26.87 0.00 46.47 4.18
2225 6455 8.921670 GTGTGGAATAAAAACATGTGTTTATCC 58.078 33.333 26.87 25.84 46.47 2.59
2226 6456 8.921670 GGTGTGGAATAAAAACATGTGTTTATC 58.078 33.333 26.87 20.49 46.47 1.75
2234 6464 5.841810 ACAGTGGTGTGGAATAAAAACATG 58.158 37.500 0.00 0.00 34.75 3.21
2242 6472 9.575868 TTTCTTATTTTACAGTGGTGTGGAATA 57.424 29.630 0.00 0.00 37.52 1.75
2270 6500 7.980662 TCGATAATTGACGGACAAAAGGTAATA 59.019 33.333 0.00 0.00 42.03 0.98
2285 6515 9.864034 CAAACATGGTATTAGTCGATAATTGAC 57.136 33.333 0.00 0.00 35.63 3.18
2290 6520 8.041919 TGAACCAAACATGGTATTAGTCGATAA 58.958 33.333 0.12 0.00 42.20 1.75
2347 6577 6.241207 CAACTCTACCGTTGTGATTTGATT 57.759 37.500 0.00 0.00 39.45 2.57
2359 6589 0.240411 GACTGCGACAACTCTACCGT 59.760 55.000 0.00 0.00 0.00 4.83
2368 6598 2.556257 TGTGCTAAAAGACTGCGACAA 58.444 42.857 0.00 0.00 0.00 3.18
2372 6602 2.349817 CCACTTGTGCTAAAAGACTGCG 60.350 50.000 0.00 0.00 0.00 5.18
2403 6633 8.986477 ATTGTCCTTTATTAATTTGTGCAGAC 57.014 30.769 0.00 0.00 0.00 3.51
2405 6635 9.853555 TGTATTGTCCTTTATTAATTTGTGCAG 57.146 29.630 0.00 0.00 0.00 4.41
2469 6700 8.589701 TCCCTCTGACTTTTTAGTTTCTTTTT 57.410 30.769 0.00 0.00 0.00 1.94
2474 6705 8.672823 TTACTTCCCTCTGACTTTTTAGTTTC 57.327 34.615 0.00 0.00 0.00 2.78
2599 6862 7.279313 TGTCTTATATTTCGTTACAAAGGGAGC 59.721 37.037 0.00 0.00 0.00 4.70
2625 6888 7.929941 TTTGTAGCCAACTTTTTCCAAAAAT 57.070 28.000 0.00 0.00 37.27 1.82
2653 6917 8.432805 ACTCCCTCTATAACAAAATGTAGGATG 58.567 37.037 0.00 0.00 0.00 3.51
2654 6918 8.568617 ACTCCCTCTATAACAAAATGTAGGAT 57.431 34.615 0.00 0.00 0.00 3.24
2841 7106 7.571080 AAAAATGAGGCAACAAACATGAAAT 57.429 28.000 0.00 0.00 41.41 2.17
2885 7164 2.550978 GATATTGCACACGTGGTAGCT 58.449 47.619 21.57 8.44 0.00 3.32
2927 7206 7.328737 TGCCTCAATCTTAGTAAAAGAGGTAC 58.671 38.462 15.40 0.00 42.36 3.34
2952 7231 3.883830 TTTGAAACCACACAGCACAAT 57.116 38.095 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.