Multiple sequence alignment - TraesCS4B01G048000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G048000 chr4B 100.000 2546 0 0 1 2546 35633949 35636494 0.000000e+00 4702.0
1 TraesCS4B01G048000 chr4B 89.785 1625 142 13 931 2543 94513960 94515572 0.000000e+00 2060.0
2 TraesCS4B01G048000 chr4B 81.522 276 44 5 491 762 642723631 642723359 1.190000e-53 220.0
3 TraesCS4B01G048000 chr7D 89.874 2064 180 10 493 2542 625237493 625235445 0.000000e+00 2627.0
4 TraesCS4B01G048000 chr1B 88.508 2071 188 19 491 2546 55228928 55226893 0.000000e+00 2460.0
5 TraesCS4B01G048000 chr1B 89.921 1637 137 15 926 2546 577792831 577791207 0.000000e+00 2084.0
6 TraesCS4B01G048000 chr1B 84.133 271 43 0 491 761 88479561 88479291 1.940000e-66 263.0
7 TraesCS4B01G048000 chr1B 81.685 273 43 5 491 759 542264938 542265207 1.190000e-53 220.0
8 TraesCS4B01G048000 chr3D 90.027 1825 139 19 725 2542 80248972 80250760 0.000000e+00 2322.0
9 TraesCS4B01G048000 chr3D 97.619 42 1 0 814 855 80249112 80249153 3.510000e-09 73.1
10 TraesCS4B01G048000 chr2D 91.026 1627 122 12 926 2542 590929464 590927852 0.000000e+00 2174.0
11 TraesCS4B01G048000 chr2D 90.313 1631 128 11 931 2546 12543759 12542144 0.000000e+00 2109.0
12 TraesCS4B01G048000 chr2D 87.823 271 32 1 492 762 551213970 551214239 1.470000e-82 316.0
13 TraesCS4B01G048000 chr2D 80.769 260 46 4 218 474 9102076 9101818 1.540000e-47 200.0
14 TraesCS4B01G048000 chr5D 90.848 1628 116 15 926 2543 353835292 353833688 0.000000e+00 2150.0
15 TraesCS4B01G048000 chr5D 91.046 1597 122 12 881 2472 257136655 257138235 0.000000e+00 2137.0
16 TraesCS4B01G048000 chr5D 87.470 415 44 4 490 901 386155326 386155735 2.960000e-129 472.0
17 TraesCS4B01G048000 chr5D 86.499 437 50 5 490 923 386165851 386166281 2.960000e-129 472.0
18 TraesCS4B01G048000 chr7B 90.552 1630 132 13 931 2542 27463632 27465257 0.000000e+00 2137.0
19 TraesCS4B01G048000 chr7B 89.685 1619 145 12 931 2542 685254030 685252427 0.000000e+00 2045.0
20 TraesCS4B01G048000 chr7B 84.838 277 42 0 486 762 685254382 685254106 1.930000e-71 279.0
21 TraesCS4B01G048000 chr7B 81.172 239 31 12 237 469 642564748 642564518 2.010000e-41 180.0
22 TraesCS4B01G048000 chr6D 90.392 1634 119 18 923 2542 14242955 14244564 0.000000e+00 2113.0
23 TraesCS4B01G048000 chr5B 90.202 1633 143 10 923 2542 548479369 548477741 0.000000e+00 2113.0
24 TraesCS4B01G048000 chr2B 88.882 1619 160 7 492 2104 72862277 72860673 0.000000e+00 1975.0
25 TraesCS4B01G048000 chr2B 83.871 279 41 3 486 762 13181544 13181820 1.940000e-66 263.0
26 TraesCS4B01G048000 chr2B 78.846 260 49 6 218 473 11819483 11819740 1.210000e-38 171.0
27 TraesCS4B01G048000 chr4A 88.062 1667 177 10 486 2146 611925307 611923657 0.000000e+00 1956.0
28 TraesCS4B01G048000 chrUn 92.164 1340 87 9 1216 2542 110637311 110638645 0.000000e+00 1877.0
29 TraesCS4B01G048000 chr3B 88.952 1231 86 16 908 2129 40224911 40226100 0.000000e+00 1474.0
30 TraesCS4B01G048000 chr4D 88.153 498 51 5 1 491 23479006 23479502 1.010000e-163 586.0
31 TraesCS4B01G048000 chr5A 82.353 272 44 3 493 762 548400901 548401170 1.520000e-57 233.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G048000 chr4B 35633949 35636494 2545 False 4702.00 4702 100.0000 1 2546 1 chr4B.!!$F1 2545
1 TraesCS4B01G048000 chr4B 94513960 94515572 1612 False 2060.00 2060 89.7850 931 2543 1 chr4B.!!$F2 1612
2 TraesCS4B01G048000 chr7D 625235445 625237493 2048 True 2627.00 2627 89.8740 493 2542 1 chr7D.!!$R1 2049
3 TraesCS4B01G048000 chr1B 55226893 55228928 2035 True 2460.00 2460 88.5080 491 2546 1 chr1B.!!$R1 2055
4 TraesCS4B01G048000 chr1B 577791207 577792831 1624 True 2084.00 2084 89.9210 926 2546 1 chr1B.!!$R3 1620
5 TraesCS4B01G048000 chr3D 80248972 80250760 1788 False 1197.55 2322 93.8230 725 2542 2 chr3D.!!$F1 1817
6 TraesCS4B01G048000 chr2D 590927852 590929464 1612 True 2174.00 2174 91.0260 926 2542 1 chr2D.!!$R3 1616
7 TraesCS4B01G048000 chr2D 12542144 12543759 1615 True 2109.00 2109 90.3130 931 2546 1 chr2D.!!$R2 1615
8 TraesCS4B01G048000 chr5D 353833688 353835292 1604 True 2150.00 2150 90.8480 926 2543 1 chr5D.!!$R1 1617
9 TraesCS4B01G048000 chr5D 257136655 257138235 1580 False 2137.00 2137 91.0460 881 2472 1 chr5D.!!$F1 1591
10 TraesCS4B01G048000 chr7B 27463632 27465257 1625 False 2137.00 2137 90.5520 931 2542 1 chr7B.!!$F1 1611
11 TraesCS4B01G048000 chr7B 685252427 685254382 1955 True 1162.00 2045 87.2615 486 2542 2 chr7B.!!$R2 2056
12 TraesCS4B01G048000 chr6D 14242955 14244564 1609 False 2113.00 2113 90.3920 923 2542 1 chr6D.!!$F1 1619
13 TraesCS4B01G048000 chr5B 548477741 548479369 1628 True 2113.00 2113 90.2020 923 2542 1 chr5B.!!$R1 1619
14 TraesCS4B01G048000 chr2B 72860673 72862277 1604 True 1975.00 1975 88.8820 492 2104 1 chr2B.!!$R1 1612
15 TraesCS4B01G048000 chr4A 611923657 611925307 1650 True 1956.00 1956 88.0620 486 2146 1 chr4A.!!$R1 1660
16 TraesCS4B01G048000 chrUn 110637311 110638645 1334 False 1877.00 1877 92.1640 1216 2542 1 chrUn.!!$F1 1326
17 TraesCS4B01G048000 chr3B 40224911 40226100 1189 False 1474.00 1474 88.9520 908 2129 1 chr3B.!!$F1 1221

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
533 534 0.105593 CAGTGGTGTCTGTGTGCTCT 59.894 55.0 0.0 0.0 0.00 4.09 F
762 763 0.249741 GGGTGTGCGATATAAGCGGT 60.250 55.0 0.0 0.0 37.44 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1499 1516 0.538118 TACACCCAGTGCGATTACCC 59.462 55.0 0.0 0.0 36.98 3.69 R
1722 1795 2.230130 AAGGCAGAGTAGAGAGCTGT 57.770 50.0 0.0 0.0 32.39 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.248248 CCTCACCAGTTGTACTCTCCA 58.752 52.381 0.00 0.00 0.00 3.86
21 22 2.028930 CCTCACCAGTTGTACTCTCCAC 60.029 54.545 0.00 0.00 0.00 4.02
22 23 2.894126 CTCACCAGTTGTACTCTCCACT 59.106 50.000 0.00 0.00 0.00 4.00
23 24 2.891580 TCACCAGTTGTACTCTCCACTC 59.108 50.000 0.00 0.00 0.00 3.51
24 25 1.887198 ACCAGTTGTACTCTCCACTCG 59.113 52.381 0.00 0.00 0.00 4.18
25 26 1.402984 CCAGTTGTACTCTCCACTCGC 60.403 57.143 0.00 0.00 0.00 5.03
26 27 0.889306 AGTTGTACTCTCCACTCGCC 59.111 55.000 0.00 0.00 0.00 5.54
27 28 0.108756 GTTGTACTCTCCACTCGCCC 60.109 60.000 0.00 0.00 0.00 6.13
28 29 0.251653 TTGTACTCTCCACTCGCCCT 60.252 55.000 0.00 0.00 0.00 5.19
29 30 0.965866 TGTACTCTCCACTCGCCCTG 60.966 60.000 0.00 0.00 0.00 4.45
30 31 1.379977 TACTCTCCACTCGCCCTGG 60.380 63.158 0.00 0.00 0.00 4.45
31 32 2.856039 TACTCTCCACTCGCCCTGGG 62.856 65.000 8.86 8.86 0.00 4.45
32 33 3.965026 CTCTCCACTCGCCCTGGGA 62.965 68.421 19.27 0.00 0.00 4.37
33 34 3.465403 CTCCACTCGCCCTGGGAG 61.465 72.222 19.27 14.77 46.05 4.30
34 35 3.992641 TCCACTCGCCCTGGGAGA 61.993 66.667 19.27 18.89 43.87 3.71
38 39 2.581354 CTCGCCCTGGGAGAGTTG 59.419 66.667 31.44 13.12 43.12 3.16
39 40 2.203788 TCGCCCTGGGAGAGTTGT 60.204 61.111 19.27 0.00 0.00 3.32
40 41 2.046892 CGCCCTGGGAGAGTTGTG 60.047 66.667 19.27 0.00 0.00 3.33
41 42 2.583441 CGCCCTGGGAGAGTTGTGA 61.583 63.158 19.27 0.00 0.00 3.58
42 43 1.003233 GCCCTGGGAGAGTTGTGAC 60.003 63.158 19.27 0.00 0.00 3.67
43 44 1.484444 GCCCTGGGAGAGTTGTGACT 61.484 60.000 19.27 0.00 39.32 3.41
44 45 0.322975 CCCTGGGAGAGTTGTGACTG 59.677 60.000 7.01 0.00 35.88 3.51
45 46 1.342074 CCTGGGAGAGTTGTGACTGA 58.658 55.000 0.00 0.00 35.88 3.41
46 47 1.001406 CCTGGGAGAGTTGTGACTGAC 59.999 57.143 0.00 0.00 35.88 3.51
47 48 1.688735 CTGGGAGAGTTGTGACTGACA 59.311 52.381 0.00 0.00 35.88 3.58
48 49 2.103094 CTGGGAGAGTTGTGACTGACAA 59.897 50.000 0.00 0.00 42.55 3.18
49 50 2.503765 TGGGAGAGTTGTGACTGACAAA 59.496 45.455 0.00 0.00 46.30 2.83
50 51 3.054728 TGGGAGAGTTGTGACTGACAAAA 60.055 43.478 0.00 0.00 46.30 2.44
51 52 4.137543 GGGAGAGTTGTGACTGACAAAAT 58.862 43.478 0.00 0.00 46.30 1.82
52 53 4.580580 GGGAGAGTTGTGACTGACAAAATT 59.419 41.667 0.00 0.00 46.30 1.82
53 54 5.067805 GGGAGAGTTGTGACTGACAAAATTT 59.932 40.000 0.00 0.00 46.30 1.82
54 55 6.405842 GGGAGAGTTGTGACTGACAAAATTTT 60.406 38.462 0.00 0.00 46.30 1.82
55 56 6.473455 GGAGAGTTGTGACTGACAAAATTTTG 59.527 38.462 25.73 25.73 46.30 2.44
56 57 6.332630 AGAGTTGTGACTGACAAAATTTTGG 58.667 36.000 29.37 17.04 46.30 3.28
57 58 6.036577 AGTTGTGACTGACAAAATTTTGGT 57.963 33.333 29.37 19.69 46.30 3.67
58 59 6.099341 AGTTGTGACTGACAAAATTTTGGTC 58.901 36.000 29.37 25.22 46.30 4.02
59 60 5.651387 TGTGACTGACAAAATTTTGGTCA 57.349 34.783 29.37 26.96 42.34 4.02
60 61 6.219417 TGTGACTGACAAAATTTTGGTCAT 57.781 33.333 28.48 19.93 42.34 3.06
61 62 6.272318 TGTGACTGACAAAATTTTGGTCATC 58.728 36.000 28.48 23.57 42.34 2.92
62 63 6.127507 TGTGACTGACAAAATTTTGGTCATCA 60.128 34.615 28.48 24.89 42.34 3.07
63 64 6.756074 GTGACTGACAAAATTTTGGTCATCAA 59.244 34.615 28.48 17.44 42.34 2.57
64 65 7.277539 GTGACTGACAAAATTTTGGTCATCAAA 59.722 33.333 28.48 13.76 42.98 2.69
65 66 7.986320 TGACTGACAAAATTTTGGTCATCAAAT 59.014 29.630 29.37 16.34 43.95 2.32
66 67 8.145316 ACTGACAAAATTTTGGTCATCAAATG 57.855 30.769 29.37 18.82 43.95 2.32
67 68 7.769970 ACTGACAAAATTTTGGTCATCAAATGT 59.230 29.630 29.37 19.28 43.95 2.71
68 69 7.917597 TGACAAAATTTTGGTCATCAAATGTG 58.082 30.769 29.37 5.67 43.95 3.21
69 70 7.012138 TGACAAAATTTTGGTCATCAAATGTGG 59.988 33.333 29.37 4.42 43.95 4.17
70 71 6.827762 ACAAAATTTTGGTCATCAAATGTGGT 59.172 30.769 29.37 5.06 43.95 4.16
71 72 7.338957 ACAAAATTTTGGTCATCAAATGTGGTT 59.661 29.630 29.37 4.72 43.95 3.67
72 73 7.878547 AAATTTTGGTCATCAAATGTGGTTT 57.121 28.000 0.00 0.00 43.95 3.27
73 74 6.864360 ATTTTGGTCATCAAATGTGGTTTG 57.136 33.333 0.00 0.00 46.86 2.93
85 86 6.445357 AAATGTGGTTTGAAACTTACGAGT 57.555 33.333 8.09 0.00 37.87 4.18
87 88 5.224562 TGTGGTTTGAAACTTACGAGTTG 57.775 39.130 8.09 0.00 45.18 3.16
88 89 4.936411 TGTGGTTTGAAACTTACGAGTTGA 59.064 37.500 8.09 0.00 45.18 3.18
89 90 5.064198 TGTGGTTTGAAACTTACGAGTTGAG 59.936 40.000 8.09 0.00 45.18 3.02
90 91 5.292589 GTGGTTTGAAACTTACGAGTTGAGA 59.707 40.000 8.09 0.00 45.18 3.27
91 92 6.018180 GTGGTTTGAAACTTACGAGTTGAGAT 60.018 38.462 8.09 0.00 45.18 2.75
92 93 6.018262 TGGTTTGAAACTTACGAGTTGAGATG 60.018 38.462 8.09 0.00 45.18 2.90
93 94 6.363473 GTTTGAAACTTACGAGTTGAGATGG 58.637 40.000 0.00 0.00 45.18 3.51
94 95 5.462530 TGAAACTTACGAGTTGAGATGGA 57.537 39.130 0.00 0.00 45.18 3.41
95 96 5.470368 TGAAACTTACGAGTTGAGATGGAG 58.530 41.667 0.00 0.00 45.18 3.86
96 97 3.512033 ACTTACGAGTTGAGATGGAGC 57.488 47.619 0.00 0.00 29.87 4.70
97 98 3.093057 ACTTACGAGTTGAGATGGAGCT 58.907 45.455 0.00 0.00 29.87 4.09
98 99 3.129638 ACTTACGAGTTGAGATGGAGCTC 59.870 47.826 4.71 4.71 29.87 4.09
99 100 1.846007 ACGAGTTGAGATGGAGCTCT 58.154 50.000 14.64 0.00 35.91 4.09
100 101 3.006112 ACGAGTTGAGATGGAGCTCTA 57.994 47.619 14.64 8.26 35.91 2.43
101 102 2.685897 ACGAGTTGAGATGGAGCTCTAC 59.314 50.000 14.64 5.51 39.75 2.59
102 103 2.685388 CGAGTTGAGATGGAGCTCTACA 59.315 50.000 14.64 4.20 41.19 2.74
103 104 3.243035 CGAGTTGAGATGGAGCTCTACAG 60.243 52.174 14.64 0.24 41.19 2.74
104 105 3.699038 GAGTTGAGATGGAGCTCTACAGT 59.301 47.826 14.64 0.00 41.19 3.55
105 106 4.093011 AGTTGAGATGGAGCTCTACAGTT 58.907 43.478 14.64 0.00 41.19 3.16
106 107 5.265191 AGTTGAGATGGAGCTCTACAGTTA 58.735 41.667 14.64 0.00 41.19 2.24
107 108 5.896678 AGTTGAGATGGAGCTCTACAGTTAT 59.103 40.000 14.64 0.00 41.19 1.89
108 109 7.063593 AGTTGAGATGGAGCTCTACAGTTATA 58.936 38.462 14.64 0.00 41.19 0.98
109 110 7.561722 AGTTGAGATGGAGCTCTACAGTTATAA 59.438 37.037 14.64 0.00 41.19 0.98
110 111 8.364142 GTTGAGATGGAGCTCTACAGTTATAAT 58.636 37.037 14.64 0.00 39.42 1.28
111 112 8.484214 TGAGATGGAGCTCTACAGTTATAATT 57.516 34.615 14.64 0.00 35.91 1.40
112 113 8.928448 TGAGATGGAGCTCTACAGTTATAATTT 58.072 33.333 14.64 0.00 35.91 1.82
113 114 9.202273 GAGATGGAGCTCTACAGTTATAATTTG 57.798 37.037 14.64 0.00 32.16 2.32
114 115 8.153550 AGATGGAGCTCTACAGTTATAATTTGG 58.846 37.037 14.64 0.00 0.00 3.28
115 116 6.591935 TGGAGCTCTACAGTTATAATTTGGG 58.408 40.000 14.64 0.00 0.00 4.12
116 117 5.998363 GGAGCTCTACAGTTATAATTTGGGG 59.002 44.000 14.64 0.00 0.00 4.96
117 118 6.183361 GGAGCTCTACAGTTATAATTTGGGGA 60.183 42.308 14.64 0.00 0.00 4.81
118 119 6.831976 AGCTCTACAGTTATAATTTGGGGAG 58.168 40.000 13.49 13.49 0.00 4.30
119 120 5.998363 GCTCTACAGTTATAATTTGGGGAGG 59.002 44.000 16.34 0.00 0.00 4.30
120 121 6.509523 TCTACAGTTATAATTTGGGGAGGG 57.490 41.667 0.00 0.00 0.00 4.30
121 122 4.536295 ACAGTTATAATTTGGGGAGGGG 57.464 45.455 0.00 0.00 0.00 4.79
122 123 3.862309 ACAGTTATAATTTGGGGAGGGGT 59.138 43.478 0.00 0.00 0.00 4.95
123 124 5.047906 ACAGTTATAATTTGGGGAGGGGTA 58.952 41.667 0.00 0.00 0.00 3.69
124 125 5.133830 ACAGTTATAATTTGGGGAGGGGTAG 59.866 44.000 0.00 0.00 0.00 3.18
125 126 5.133830 CAGTTATAATTTGGGGAGGGGTAGT 59.866 44.000 0.00 0.00 0.00 2.73
126 127 5.133830 AGTTATAATTTGGGGAGGGGTAGTG 59.866 44.000 0.00 0.00 0.00 2.74
127 128 2.068831 AATTTGGGGAGGGGTAGTGA 57.931 50.000 0.00 0.00 0.00 3.41
128 129 2.068831 ATTTGGGGAGGGGTAGTGAA 57.931 50.000 0.00 0.00 0.00 3.18
129 130 1.835895 TTTGGGGAGGGGTAGTGAAA 58.164 50.000 0.00 0.00 0.00 2.69
130 131 1.835895 TTGGGGAGGGGTAGTGAAAA 58.164 50.000 0.00 0.00 0.00 2.29
131 132 2.068831 TGGGGAGGGGTAGTGAAAAT 57.931 50.000 0.00 0.00 0.00 1.82
132 133 1.638589 TGGGGAGGGGTAGTGAAAATG 59.361 52.381 0.00 0.00 0.00 2.32
133 134 1.920351 GGGGAGGGGTAGTGAAAATGA 59.080 52.381 0.00 0.00 0.00 2.57
134 135 2.092375 GGGGAGGGGTAGTGAAAATGAG 60.092 54.545 0.00 0.00 0.00 2.90
135 136 2.092375 GGGAGGGGTAGTGAAAATGAGG 60.092 54.545 0.00 0.00 0.00 3.86
136 137 2.092375 GGAGGGGTAGTGAAAATGAGGG 60.092 54.545 0.00 0.00 0.00 4.30
137 138 1.923148 AGGGGTAGTGAAAATGAGGGG 59.077 52.381 0.00 0.00 0.00 4.79
138 139 1.920351 GGGGTAGTGAAAATGAGGGGA 59.080 52.381 0.00 0.00 0.00 4.81
139 140 2.356844 GGGGTAGTGAAAATGAGGGGAC 60.357 54.545 0.00 0.00 0.00 4.46
140 141 2.629051 GGTAGTGAAAATGAGGGGACG 58.371 52.381 0.00 0.00 0.00 4.79
141 142 2.629051 GTAGTGAAAATGAGGGGACGG 58.371 52.381 0.00 0.00 0.00 4.79
142 143 0.328258 AGTGAAAATGAGGGGACGGG 59.672 55.000 0.00 0.00 0.00 5.28
143 144 0.679960 GTGAAAATGAGGGGACGGGG 60.680 60.000 0.00 0.00 0.00 5.73
144 145 1.137594 TGAAAATGAGGGGACGGGGT 61.138 55.000 0.00 0.00 0.00 4.95
145 146 0.913924 GAAAATGAGGGGACGGGGTA 59.086 55.000 0.00 0.00 0.00 3.69
146 147 0.916809 AAAATGAGGGGACGGGGTAG 59.083 55.000 0.00 0.00 0.00 3.18
147 148 1.632965 AAATGAGGGGACGGGGTAGC 61.633 60.000 0.00 0.00 0.00 3.58
148 149 2.547123 AATGAGGGGACGGGGTAGCT 62.547 60.000 0.00 0.00 0.00 3.32
149 150 1.661990 ATGAGGGGACGGGGTAGCTA 61.662 60.000 0.00 0.00 0.00 3.32
150 151 1.531128 GAGGGGACGGGGTAGCTAG 60.531 68.421 0.00 0.00 0.00 3.42
151 152 2.281429 GGGGACGGGGTAGCTAGT 59.719 66.667 0.00 0.00 0.00 2.57
152 153 0.995675 AGGGGACGGGGTAGCTAGTA 60.996 60.000 0.00 0.00 0.00 1.82
153 154 0.539207 GGGGACGGGGTAGCTAGTAG 60.539 65.000 0.00 0.00 0.00 2.57
154 155 0.539207 GGGACGGGGTAGCTAGTAGG 60.539 65.000 0.00 0.00 0.00 3.18
155 156 0.539207 GGACGGGGTAGCTAGTAGGG 60.539 65.000 0.00 0.00 0.00 3.53
156 157 0.539207 GACGGGGTAGCTAGTAGGGG 60.539 65.000 0.00 0.00 0.00 4.79
157 158 1.228800 CGGGGTAGCTAGTAGGGGG 60.229 68.421 0.00 0.00 0.00 5.40
158 159 1.723128 CGGGGTAGCTAGTAGGGGGA 61.723 65.000 0.00 0.00 0.00 4.81
159 160 0.564671 GGGGTAGCTAGTAGGGGGAA 59.435 60.000 0.00 0.00 0.00 3.97
160 161 1.482741 GGGGTAGCTAGTAGGGGGAAG 60.483 61.905 0.00 0.00 0.00 3.46
161 162 1.502474 GGGTAGCTAGTAGGGGGAAGA 59.498 57.143 0.00 0.00 0.00 2.87
162 163 2.090887 GGGTAGCTAGTAGGGGGAAGAA 60.091 54.545 0.00 0.00 0.00 2.52
163 164 3.631865 GGGTAGCTAGTAGGGGGAAGAAA 60.632 52.174 0.00 0.00 0.00 2.52
164 165 4.035814 GGTAGCTAGTAGGGGGAAGAAAA 58.964 47.826 0.00 0.00 0.00 2.29
165 166 4.659368 GGTAGCTAGTAGGGGGAAGAAAAT 59.341 45.833 0.00 0.00 0.00 1.82
166 167 5.132312 GGTAGCTAGTAGGGGGAAGAAAATT 59.868 44.000 0.00 0.00 0.00 1.82
167 168 5.798239 AGCTAGTAGGGGGAAGAAAATTT 57.202 39.130 0.00 0.00 0.00 1.82
168 169 6.903340 AGCTAGTAGGGGGAAGAAAATTTA 57.097 37.500 0.00 0.00 0.00 1.40
169 170 6.660800 AGCTAGTAGGGGGAAGAAAATTTAC 58.339 40.000 0.00 0.00 0.00 2.01
170 171 5.826737 GCTAGTAGGGGGAAGAAAATTTACC 59.173 44.000 0.00 0.00 0.00 2.85
179 180 7.490657 GGGAAGAAAATTTACCCCTGTAATT 57.509 36.000 9.92 0.00 36.84 1.40
180 181 8.598202 GGGAAGAAAATTTACCCCTGTAATTA 57.402 34.615 9.92 0.00 36.84 1.40
181 182 9.209048 GGGAAGAAAATTTACCCCTGTAATTAT 57.791 33.333 9.92 0.00 36.84 1.28
184 185 9.777008 AAGAAAATTTACCCCTGTAATTATGGA 57.223 29.630 8.51 0.00 36.84 3.41
185 186 9.951866 AGAAAATTTACCCCTGTAATTATGGAT 57.048 29.630 8.51 1.33 36.84 3.41
188 189 8.857694 AATTTACCCCTGTAATTATGGATACG 57.142 34.615 8.51 0.00 36.84 3.06
189 190 6.999705 TTACCCCTGTAATTATGGATACGT 57.000 37.500 8.51 0.00 33.18 3.57
190 191 8.489676 TTTACCCCTGTAATTATGGATACGTA 57.510 34.615 0.00 0.00 36.84 3.57
191 192 6.350629 ACCCCTGTAATTATGGATACGTAC 57.649 41.667 0.00 0.00 37.94 3.67
192 193 5.840149 ACCCCTGTAATTATGGATACGTACA 59.160 40.000 0.00 0.00 37.94 2.90
193 194 6.499350 ACCCCTGTAATTATGGATACGTACAT 59.501 38.462 0.00 0.16 37.94 2.29
194 195 7.039882 CCCCTGTAATTATGGATACGTACATC 58.960 42.308 0.00 0.00 37.94 3.06
195 196 7.039882 CCCTGTAATTATGGATACGTACATCC 58.960 42.308 9.99 9.99 44.21 3.51
206 207 6.698380 GGATACGTACATCCATTATTCCAGT 58.302 40.000 11.74 0.00 43.52 4.00
207 208 6.812160 GGATACGTACATCCATTATTCCAGTC 59.188 42.308 11.74 0.00 43.52 3.51
208 209 4.957296 ACGTACATCCATTATTCCAGTCC 58.043 43.478 0.00 0.00 0.00 3.85
209 210 3.987868 CGTACATCCATTATTCCAGTCCG 59.012 47.826 0.00 0.00 0.00 4.79
210 211 4.500887 CGTACATCCATTATTCCAGTCCGT 60.501 45.833 0.00 0.00 0.00 4.69
211 212 5.278610 CGTACATCCATTATTCCAGTCCGTA 60.279 44.000 0.00 0.00 0.00 4.02
212 213 5.623956 ACATCCATTATTCCAGTCCGTAA 57.376 39.130 0.00 0.00 0.00 3.18
213 214 6.187727 ACATCCATTATTCCAGTCCGTAAT 57.812 37.500 0.00 0.00 0.00 1.89
214 215 6.231211 ACATCCATTATTCCAGTCCGTAATC 58.769 40.000 0.00 0.00 0.00 1.75
215 216 6.043243 ACATCCATTATTCCAGTCCGTAATCT 59.957 38.462 0.00 0.00 0.00 2.40
216 217 7.234782 ACATCCATTATTCCAGTCCGTAATCTA 59.765 37.037 0.00 0.00 0.00 1.98
217 218 7.228314 TCCATTATTCCAGTCCGTAATCTAG 57.772 40.000 0.00 0.00 0.00 2.43
218 219 7.008332 TCCATTATTCCAGTCCGTAATCTAGA 58.992 38.462 0.00 0.00 0.00 2.43
219 220 7.674348 TCCATTATTCCAGTCCGTAATCTAGAT 59.326 37.037 0.00 0.00 0.00 1.98
220 221 8.967918 CCATTATTCCAGTCCGTAATCTAGATA 58.032 37.037 5.46 0.00 0.00 1.98
221 222 9.790389 CATTATTCCAGTCCGTAATCTAGATAC 57.210 37.037 5.46 0.00 0.00 2.24
222 223 6.837471 ATTCCAGTCCGTAATCTAGATACC 57.163 41.667 5.46 0.00 0.00 2.73
223 224 4.660168 TCCAGTCCGTAATCTAGATACCC 58.340 47.826 5.46 0.00 0.00 3.69
224 225 3.762823 CCAGTCCGTAATCTAGATACCCC 59.237 52.174 5.46 0.00 0.00 4.95
225 226 4.508763 CCAGTCCGTAATCTAGATACCCCT 60.509 50.000 5.46 0.00 0.00 4.79
226 227 5.078256 CAGTCCGTAATCTAGATACCCCTT 58.922 45.833 5.46 0.00 0.00 3.95
227 228 5.047943 CAGTCCGTAATCTAGATACCCCTTG 60.048 48.000 5.46 0.00 0.00 3.61
228 229 4.831710 GTCCGTAATCTAGATACCCCTTGT 59.168 45.833 5.46 0.00 0.00 3.16
229 230 6.006449 GTCCGTAATCTAGATACCCCTTGTA 58.994 44.000 5.46 0.00 0.00 2.41
230 231 6.662663 GTCCGTAATCTAGATACCCCTTGTAT 59.337 42.308 5.46 0.00 42.95 2.29
231 232 7.178097 GTCCGTAATCTAGATACCCCTTGTATT 59.822 40.741 5.46 0.00 40.31 1.89
232 233 7.177921 TCCGTAATCTAGATACCCCTTGTATTG 59.822 40.741 5.46 0.00 40.31 1.90
233 234 7.039223 CCGTAATCTAGATACCCCTTGTATTGT 60.039 40.741 5.46 0.00 40.31 2.71
234 235 9.017509 CGTAATCTAGATACCCCTTGTATTGTA 57.982 37.037 5.46 0.00 40.31 2.41
237 238 7.281040 TCTAGATACCCCTTGTATTGTAACG 57.719 40.000 0.00 0.00 40.31 3.18
238 239 5.286267 AGATACCCCTTGTATTGTAACGG 57.714 43.478 0.00 0.00 40.31 4.44
239 240 2.793288 ACCCCTTGTATTGTAACGGG 57.207 50.000 0.00 0.00 35.06 5.28
240 241 2.268107 ACCCCTTGTATTGTAACGGGA 58.732 47.619 0.00 0.00 33.46 5.14
241 242 2.643801 ACCCCTTGTATTGTAACGGGAA 59.356 45.455 0.00 0.00 33.46 3.97
242 243 3.267551 ACCCCTTGTATTGTAACGGGAAT 59.732 43.478 0.00 0.00 33.46 3.01
243 244 4.264038 ACCCCTTGTATTGTAACGGGAATT 60.264 41.667 0.00 0.00 33.46 2.17
244 245 4.097286 CCCCTTGTATTGTAACGGGAATTG 59.903 45.833 0.00 0.00 33.46 2.32
245 246 4.944930 CCCTTGTATTGTAACGGGAATTGA 59.055 41.667 0.00 0.00 33.46 2.57
246 247 5.592688 CCCTTGTATTGTAACGGGAATTGAT 59.407 40.000 0.00 0.00 33.46 2.57
247 248 6.096282 CCCTTGTATTGTAACGGGAATTGATT 59.904 38.462 0.00 0.00 33.46 2.57
248 249 6.972328 CCTTGTATTGTAACGGGAATTGATTG 59.028 38.462 0.00 0.00 0.00 2.67
249 250 7.148154 CCTTGTATTGTAACGGGAATTGATTGA 60.148 37.037 0.00 0.00 0.00 2.57
250 251 7.873719 TGTATTGTAACGGGAATTGATTGAT 57.126 32.000 0.00 0.00 0.00 2.57
251 252 7.702386 TGTATTGTAACGGGAATTGATTGATG 58.298 34.615 0.00 0.00 0.00 3.07
252 253 7.554476 TGTATTGTAACGGGAATTGATTGATGA 59.446 33.333 0.00 0.00 0.00 2.92
253 254 6.825944 TTGTAACGGGAATTGATTGATGAA 57.174 33.333 0.00 0.00 0.00 2.57
254 255 6.825944 TGTAACGGGAATTGATTGATGAAA 57.174 33.333 0.00 0.00 0.00 2.69
255 256 7.220741 TGTAACGGGAATTGATTGATGAAAA 57.779 32.000 0.00 0.00 0.00 2.29
256 257 7.835822 TGTAACGGGAATTGATTGATGAAAAT 58.164 30.769 0.00 0.00 0.00 1.82
257 258 8.310382 TGTAACGGGAATTGATTGATGAAAATT 58.690 29.630 0.00 0.00 0.00 1.82
258 259 9.150348 GTAACGGGAATTGATTGATGAAAATTT 57.850 29.630 0.00 0.00 0.00 1.82
260 261 8.931385 ACGGGAATTGATTGATGAAAATTTAG 57.069 30.769 0.00 0.00 0.00 1.85
261 262 8.748412 ACGGGAATTGATTGATGAAAATTTAGA 58.252 29.630 0.00 0.00 0.00 2.10
262 263 9.754382 CGGGAATTGATTGATGAAAATTTAGAT 57.246 29.630 0.00 0.00 0.00 1.98
380 381 8.712285 ACTGGAAAAATATTTTCTCATGCATG 57.288 30.769 21.07 21.07 0.00 4.06
381 382 8.533657 ACTGGAAAAATATTTTCTCATGCATGA 58.466 29.630 27.10 27.10 35.16 3.07
382 383 9.542462 CTGGAAAAATATTTTCTCATGCATGAT 57.458 29.630 28.81 16.48 36.02 2.45
383 384 9.893634 TGGAAAAATATTTTCTCATGCATGATT 57.106 25.926 28.81 16.01 36.02 2.57
393 394 8.865590 TTTCTCATGCATGATTGAATATTGTG 57.134 30.769 28.81 13.00 36.02 3.33
394 395 6.977213 TCTCATGCATGATTGAATATTGTGG 58.023 36.000 28.81 12.81 36.02 4.17
395 396 6.548251 TCTCATGCATGATTGAATATTGTGGT 59.452 34.615 28.81 0.00 36.02 4.16
396 397 6.508777 TCATGCATGATTGAATATTGTGGTG 58.491 36.000 25.42 0.00 0.00 4.17
397 398 5.265350 TGCATGATTGAATATTGTGGTGG 57.735 39.130 0.00 0.00 0.00 4.61
398 399 4.099727 TGCATGATTGAATATTGTGGTGGG 59.900 41.667 0.00 0.00 0.00 4.61
399 400 4.099881 GCATGATTGAATATTGTGGTGGGT 59.900 41.667 0.00 0.00 0.00 4.51
400 401 5.593968 CATGATTGAATATTGTGGTGGGTG 58.406 41.667 0.00 0.00 0.00 4.61
401 402 4.671831 TGATTGAATATTGTGGTGGGTGT 58.328 39.130 0.00 0.00 0.00 4.16
402 403 5.083122 TGATTGAATATTGTGGTGGGTGTT 58.917 37.500 0.00 0.00 0.00 3.32
403 404 5.184864 TGATTGAATATTGTGGTGGGTGTTC 59.815 40.000 0.00 0.00 0.00 3.18
404 405 4.380843 TGAATATTGTGGTGGGTGTTCT 57.619 40.909 0.00 0.00 0.00 3.01
405 406 4.735369 TGAATATTGTGGTGGGTGTTCTT 58.265 39.130 0.00 0.00 0.00 2.52
406 407 5.144100 TGAATATTGTGGTGGGTGTTCTTT 58.856 37.500 0.00 0.00 0.00 2.52
407 408 5.242838 TGAATATTGTGGTGGGTGTTCTTTC 59.757 40.000 0.00 0.00 0.00 2.62
408 409 2.516227 TTGTGGTGGGTGTTCTTTCA 57.484 45.000 0.00 0.00 0.00 2.69
409 410 2.746279 TGTGGTGGGTGTTCTTTCAT 57.254 45.000 0.00 0.00 0.00 2.57
410 411 2.305928 TGTGGTGGGTGTTCTTTCATG 58.694 47.619 0.00 0.00 0.00 3.07
411 412 1.000274 GTGGTGGGTGTTCTTTCATGC 60.000 52.381 0.00 0.00 0.00 4.06
412 413 1.327303 GGTGGGTGTTCTTTCATGCA 58.673 50.000 0.00 0.00 0.00 3.96
413 414 1.895131 GGTGGGTGTTCTTTCATGCAT 59.105 47.619 0.00 0.00 0.00 3.96
414 415 3.088532 GGTGGGTGTTCTTTCATGCATA 58.911 45.455 0.00 0.00 0.00 3.14
415 416 3.509575 GGTGGGTGTTCTTTCATGCATAA 59.490 43.478 0.00 0.00 0.00 1.90
416 417 4.160252 GGTGGGTGTTCTTTCATGCATAAT 59.840 41.667 0.00 0.00 0.00 1.28
417 418 5.337491 GGTGGGTGTTCTTTCATGCATAATT 60.337 40.000 0.00 0.00 0.00 1.40
418 419 5.577945 GTGGGTGTTCTTTCATGCATAATTG 59.422 40.000 0.00 0.00 0.00 2.32
435 436 6.989659 CATAATTGCATTTTGAGATAGGCCT 58.010 36.000 11.78 11.78 0.00 5.19
436 437 5.945144 AATTGCATTTTGAGATAGGCCTT 57.055 34.783 12.58 0.00 0.00 4.35
437 438 8.579006 CATAATTGCATTTTGAGATAGGCCTTA 58.421 33.333 12.58 0.00 0.00 2.69
438 439 7.607615 AATTGCATTTTGAGATAGGCCTTAT 57.392 32.000 12.58 1.87 0.00 1.73
439 440 6.639632 TTGCATTTTGAGATAGGCCTTATC 57.360 37.500 12.58 12.18 38.78 1.75
440 441 5.072741 TGCATTTTGAGATAGGCCTTATCC 58.927 41.667 12.58 7.07 39.22 2.59
441 442 5.163055 TGCATTTTGAGATAGGCCTTATCCT 60.163 40.000 12.58 2.65 39.22 3.24
442 443 6.044287 TGCATTTTGAGATAGGCCTTATCCTA 59.956 38.462 12.58 0.00 42.45 2.94
444 445 7.613411 GCATTTTGAGATAGGCCTTATCCTATT 59.387 37.037 12.58 0.00 46.54 1.73
445 446 9.171877 CATTTTGAGATAGGCCTTATCCTATTC 57.828 37.037 12.58 6.44 46.54 1.75
446 447 7.872061 TTTGAGATAGGCCTTATCCTATTCA 57.128 36.000 12.58 8.81 46.54 2.57
447 448 8.454859 TTTGAGATAGGCCTTATCCTATTCAT 57.545 34.615 12.58 0.00 46.54 2.57
448 449 9.560860 TTTGAGATAGGCCTTATCCTATTCATA 57.439 33.333 12.58 4.81 46.54 2.15
449 450 8.540507 TGAGATAGGCCTTATCCTATTCATAC 57.459 38.462 12.58 0.00 46.54 2.39
450 451 8.347591 TGAGATAGGCCTTATCCTATTCATACT 58.652 37.037 12.58 0.00 46.54 2.12
451 452 9.207868 GAGATAGGCCTTATCCTATTCATACTT 57.792 37.037 12.58 0.00 46.54 2.24
452 453 8.986991 AGATAGGCCTTATCCTATTCATACTTG 58.013 37.037 12.58 0.00 46.54 3.16
453 454 8.686739 ATAGGCCTTATCCTATTCATACTTGT 57.313 34.615 12.58 0.00 44.81 3.16
454 455 9.784376 ATAGGCCTTATCCTATTCATACTTGTA 57.216 33.333 12.58 0.00 44.81 2.41
455 456 8.686739 AGGCCTTATCCTATTCATACTTGTAT 57.313 34.615 0.00 0.00 33.95 2.29
456 457 8.543774 AGGCCTTATCCTATTCATACTTGTATG 58.456 37.037 0.00 13.01 33.95 2.39
457 458 8.540388 GGCCTTATCCTATTCATACTTGTATGA 58.460 37.037 16.69 16.69 34.91 2.15
463 464 8.727100 TCCTATTCATACTTGTATGATGAGGT 57.273 34.615 28.08 16.19 38.52 3.85
464 465 8.588472 TCCTATTCATACTTGTATGATGAGGTG 58.412 37.037 28.08 16.82 38.52 4.00
465 466 8.588472 CCTATTCATACTTGTATGATGAGGTGA 58.412 37.037 25.03 13.14 36.47 4.02
466 467 9.416794 CTATTCATACTTGTATGATGAGGTGAC 57.583 37.037 20.00 0.00 36.47 3.67
467 468 6.790232 TCATACTTGTATGATGAGGTGACA 57.210 37.500 16.69 0.00 32.04 3.58
468 469 7.365497 TCATACTTGTATGATGAGGTGACAT 57.635 36.000 16.69 0.00 32.04 3.06
469 470 8.477419 TCATACTTGTATGATGAGGTGACATA 57.523 34.615 16.69 0.00 32.04 2.29
470 471 8.360390 TCATACTTGTATGATGAGGTGACATAC 58.640 37.037 16.69 0.00 43.48 2.39
471 472 6.798427 ACTTGTATGATGAGGTGACATACT 57.202 37.500 0.69 0.00 43.53 2.12
472 473 7.187824 ACTTGTATGATGAGGTGACATACTT 57.812 36.000 0.69 0.00 43.53 2.24
473 474 7.044181 ACTTGTATGATGAGGTGACATACTTG 58.956 38.462 0.69 0.00 43.53 3.16
474 475 6.544928 TGTATGATGAGGTGACATACTTGT 57.455 37.500 0.69 0.00 43.53 3.16
475 476 6.340522 TGTATGATGAGGTGACATACTTGTG 58.659 40.000 0.69 0.00 43.53 3.33
476 477 4.890158 TGATGAGGTGACATACTTGTGT 57.110 40.909 0.00 0.00 35.79 3.72
477 478 4.568956 TGATGAGGTGACATACTTGTGTG 58.431 43.478 0.00 0.00 35.79 3.82
478 479 2.766313 TGAGGTGACATACTTGTGTGC 58.234 47.619 0.00 0.00 35.79 4.57
479 480 2.076863 GAGGTGACATACTTGTGTGCC 58.923 52.381 0.00 0.00 35.79 5.01
480 481 1.419762 AGGTGACATACTTGTGTGCCA 59.580 47.619 0.00 0.00 35.79 4.92
481 482 2.158682 AGGTGACATACTTGTGTGCCAA 60.159 45.455 0.00 0.00 35.79 4.52
500 501 9.702253 TGTGCCAAGATAAATAAAGGGTTAATA 57.298 29.630 0.00 0.00 0.00 0.98
525 526 2.620251 TTTGTCCTCAGTGGTGTCTG 57.380 50.000 0.00 0.00 37.07 3.51
533 534 0.105593 CAGTGGTGTCTGTGTGCTCT 59.894 55.000 0.00 0.00 0.00 4.09
534 535 1.341209 CAGTGGTGTCTGTGTGCTCTA 59.659 52.381 0.00 0.00 0.00 2.43
581 582 2.441750 TCAGTTTTGCCCCTAGTCTGTT 59.558 45.455 0.00 0.00 0.00 3.16
584 585 1.053424 TTTGCCCCTAGTCTGTTCGT 58.947 50.000 0.00 0.00 0.00 3.85
617 618 3.112709 GAACACTGCCGTCTCCGC 61.113 66.667 0.00 0.00 0.00 5.54
626 627 2.125912 CGTCTCCGCCAGGTCAAG 60.126 66.667 0.00 0.00 39.05 3.02
647 648 2.223745 GTTTTGACTCGGCCCTTACAA 58.776 47.619 0.00 0.00 0.00 2.41
679 680 2.831366 GCAGAGATGCGCCACATGG 61.831 63.158 4.18 0.00 39.84 3.66
683 684 1.002257 AGATGCGCCACATGGTCAA 60.002 52.632 4.18 0.00 39.84 3.18
695 696 3.814842 CACATGGTCAAACTGTTGCTCTA 59.185 43.478 0.00 0.00 34.50 2.43
705 706 2.072298 CTGTTGCTCTAGTGGCTTGTC 58.928 52.381 10.61 2.20 0.00 3.18
713 714 1.556911 CTAGTGGCTTGTCAGACCCAT 59.443 52.381 0.00 0.00 0.00 4.00
724 725 1.078143 AGACCCATCAAAGAGCCGC 60.078 57.895 0.00 0.00 0.00 6.53
762 763 0.249741 GGGTGTGCGATATAAGCGGT 60.250 55.000 0.00 0.00 37.44 5.68
765 766 0.462375 TGTGCGATATAAGCGGTGGT 59.538 50.000 0.00 0.00 37.44 4.16
787 788 1.448540 CGTCCTTGGAGCTCGCAAT 60.449 57.895 15.23 0.00 0.00 3.56
887 888 3.078196 TGGGCACGGGCGATAGAA 61.078 61.111 2.17 0.00 42.47 2.10
906 907 2.031163 GAGCAGCGGTGACCACTT 59.969 61.111 20.69 0.00 0.00 3.16
929 930 0.827925 ACAGAGAGAGCGGGTGACAA 60.828 55.000 0.00 0.00 0.00 3.18
961 962 1.067295 TGGGAAGATTGCTGTGGAGT 58.933 50.000 0.00 0.00 0.00 3.85
991 992 0.253327 GTTGAGATCCCCTTCGGCTT 59.747 55.000 0.00 0.00 0.00 4.35
1071 1073 0.824109 TGGAGATGCCGATCTTCGTT 59.176 50.000 0.00 0.00 39.19 3.85
1318 1324 2.417933 GCAAGAAGAGCATGACGAATGT 59.582 45.455 0.00 0.00 38.65 2.71
1321 1327 5.390885 GCAAGAAGAGCATGACGAATGTTTA 60.391 40.000 0.00 0.00 38.65 2.01
1331 1337 2.943033 GACGAATGTTTACCCATCCTGG 59.057 50.000 0.00 0.00 37.25 4.45
1362 1368 2.980233 GGCCGCAACACAAGCTCT 60.980 61.111 0.00 0.00 0.00 4.09
1406 1413 2.670414 GCACACAATGACAGAGAGCTAC 59.330 50.000 0.00 0.00 0.00 3.58
1409 1417 2.164422 CACAATGACAGAGAGCTACCGA 59.836 50.000 0.00 0.00 0.00 4.69
1438 1449 6.633500 TTAGGATGTTGAACAAGAAGGTTG 57.367 37.500 0.62 0.00 0.00 3.77
1524 1541 2.264005 TCGCACTGGGTGTAATGTTT 57.736 45.000 0.00 0.00 35.75 2.83
1544 1591 8.721019 ATGTTTAAATTGTATGGAAAGGCATG 57.279 30.769 0.00 0.00 0.00 4.06
1545 1592 7.901029 TGTTTAAATTGTATGGAAAGGCATGA 58.099 30.769 0.00 0.00 0.00 3.07
1546 1593 8.370940 TGTTTAAATTGTATGGAAAGGCATGAA 58.629 29.630 0.00 0.00 0.00 2.57
1547 1594 9.382275 GTTTAAATTGTATGGAAAGGCATGAAT 57.618 29.630 0.00 0.00 0.00 2.57
1548 1595 9.956640 TTTAAATTGTATGGAAAGGCATGAATT 57.043 25.926 0.00 0.00 0.00 2.17
1551 1598 6.713762 TTGTATGGAAAGGCATGAATTAGG 57.286 37.500 0.00 0.00 0.00 2.69
1552 1599 5.139727 TGTATGGAAAGGCATGAATTAGGG 58.860 41.667 0.00 0.00 0.00 3.53
1860 1940 2.439507 GGGTGGGCAAATGAGATCTCTA 59.560 50.000 22.95 10.37 0.00 2.43
1880 1961 6.982141 TCTCTAGCGTGTTTTTCTGTTTTCTA 59.018 34.615 0.00 0.00 0.00 2.10
1961 2051 7.721286 AGCTAATTGAATTATTCCAGAGTCG 57.279 36.000 2.22 0.00 0.00 4.18
2078 2176 3.084039 GTCATGGAAAATGTGCCTCAGA 58.916 45.455 0.00 0.00 0.00 3.27
2301 2422 4.778213 TGACATGGATAGGGAAGGAAAG 57.222 45.455 0.00 0.00 0.00 2.62
2305 2426 6.183361 TGACATGGATAGGGAAGGAAAGTATG 60.183 42.308 0.00 0.00 0.00 2.39
2332 2453 2.960384 TGAGACCGTGACTTGGTTTAGA 59.040 45.455 0.00 0.00 40.63 2.10
2339 2460 5.756833 ACCGTGACTTGGTTTAGAGTTTAAG 59.243 40.000 0.00 0.00 35.82 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.891580 GAGTGGAGAGTACAACTGGTGA 59.108 50.000 0.00 0.00 0.00 4.02
3 4 2.351835 CGAGTGGAGAGTACAACTGGTG 60.352 54.545 0.00 0.00 0.00 4.17
5 6 1.402984 GCGAGTGGAGAGTACAACTGG 60.403 57.143 0.00 0.00 0.00 4.00
6 7 1.402984 GGCGAGTGGAGAGTACAACTG 60.403 57.143 0.00 0.00 0.00 3.16
7 8 0.889306 GGCGAGTGGAGAGTACAACT 59.111 55.000 0.00 0.00 0.00 3.16
8 9 0.108756 GGGCGAGTGGAGAGTACAAC 60.109 60.000 0.00 0.00 0.00 3.32
9 10 0.251653 AGGGCGAGTGGAGAGTACAA 60.252 55.000 0.00 0.00 0.00 2.41
10 11 0.965866 CAGGGCGAGTGGAGAGTACA 60.966 60.000 0.00 0.00 0.00 2.90
11 12 1.668101 CCAGGGCGAGTGGAGAGTAC 61.668 65.000 0.00 0.00 37.23 2.73
12 13 1.379977 CCAGGGCGAGTGGAGAGTA 60.380 63.158 0.00 0.00 37.23 2.59
13 14 2.681778 CCAGGGCGAGTGGAGAGT 60.682 66.667 0.00 0.00 37.23 3.24
14 15 3.465403 CCCAGGGCGAGTGGAGAG 61.465 72.222 0.00 0.00 37.23 3.20
15 16 3.965026 CTCCCAGGGCGAGTGGAGA 62.965 68.421 0.00 0.00 45.93 3.71
16 17 3.465403 CTCCCAGGGCGAGTGGAG 61.465 72.222 0.00 0.00 37.23 3.86
17 18 3.965026 CTCTCCCAGGGCGAGTGGA 62.965 68.421 16.68 0.16 37.23 4.02
18 19 3.465403 CTCTCCCAGGGCGAGTGG 61.465 72.222 16.68 0.00 34.52 4.00
19 20 2.286523 AACTCTCCCAGGGCGAGTG 61.287 63.158 28.80 12.51 38.00 3.51
20 21 2.120718 AACTCTCCCAGGGCGAGT 59.879 61.111 23.76 23.76 39.53 4.18
21 22 2.286523 ACAACTCTCCCAGGGCGAG 61.287 63.158 22.39 22.39 0.00 5.03
22 23 2.203788 ACAACTCTCCCAGGGCGA 60.204 61.111 0.00 0.00 0.00 5.54
23 24 2.046892 CACAACTCTCCCAGGGCG 60.047 66.667 0.00 0.00 0.00 6.13
24 25 1.003233 GTCACAACTCTCCCAGGGC 60.003 63.158 0.00 0.00 0.00 5.19
25 26 0.322975 CAGTCACAACTCTCCCAGGG 59.677 60.000 0.00 0.00 31.71 4.45
26 27 1.001406 GTCAGTCACAACTCTCCCAGG 59.999 57.143 0.00 0.00 31.71 4.45
27 28 1.688735 TGTCAGTCACAACTCTCCCAG 59.311 52.381 0.00 0.00 31.71 4.45
28 29 1.788229 TGTCAGTCACAACTCTCCCA 58.212 50.000 0.00 0.00 31.71 4.37
29 30 2.910688 TTGTCAGTCACAACTCTCCC 57.089 50.000 0.00 0.00 40.29 4.30
30 31 5.757850 AATTTTGTCAGTCACAACTCTCC 57.242 39.130 0.00 0.00 45.12 3.71
31 32 6.473455 CCAAAATTTTGTCAGTCACAACTCTC 59.527 38.462 25.25 0.00 45.12 3.20
32 33 6.071391 ACCAAAATTTTGTCAGTCACAACTCT 60.071 34.615 25.25 0.00 45.12 3.24
33 34 6.099341 ACCAAAATTTTGTCAGTCACAACTC 58.901 36.000 25.25 0.00 45.12 3.01
34 35 6.036577 ACCAAAATTTTGTCAGTCACAACT 57.963 33.333 25.25 0.00 45.12 3.16
35 36 5.866633 TGACCAAAATTTTGTCAGTCACAAC 59.133 36.000 25.10 10.31 45.12 3.32
36 37 6.030548 TGACCAAAATTTTGTCAGTCACAA 57.969 33.333 25.10 12.11 43.68 3.33
37 38 5.651387 TGACCAAAATTTTGTCAGTCACA 57.349 34.783 25.10 13.02 34.35 3.58
38 39 6.272318 TGATGACCAAAATTTTGTCAGTCAC 58.728 36.000 28.43 23.49 38.62 3.67
39 40 6.462552 TGATGACCAAAATTTTGTCAGTCA 57.537 33.333 28.20 28.20 39.44 3.41
40 41 7.769272 TTTGATGACCAAAATTTTGTCAGTC 57.231 32.000 25.25 23.40 41.43 3.51
41 42 7.769970 ACATTTGATGACCAAAATTTTGTCAGT 59.230 29.630 25.25 17.57 46.64 3.41
42 43 8.065407 CACATTTGATGACCAAAATTTTGTCAG 58.935 33.333 25.25 14.89 46.64 3.51
43 44 7.012138 CCACATTTGATGACCAAAATTTTGTCA 59.988 33.333 25.25 25.07 46.64 3.58
44 45 7.012232 ACCACATTTGATGACCAAAATTTTGTC 59.988 33.333 25.25 21.48 46.64 3.18
45 46 6.827762 ACCACATTTGATGACCAAAATTTTGT 59.172 30.769 25.25 15.43 46.64 2.83
46 47 7.261829 ACCACATTTGATGACCAAAATTTTG 57.738 32.000 21.65 21.65 46.64 2.44
47 48 7.878547 AACCACATTTGATGACCAAAATTTT 57.121 28.000 0.00 0.00 46.64 1.82
48 49 7.878547 AAACCACATTTGATGACCAAAATTT 57.121 28.000 0.00 0.00 46.64 1.82
57 58 7.201741 TCGTAAGTTTCAAACCACATTTGATGA 60.202 33.333 0.00 0.00 46.93 2.92
58 59 6.915300 TCGTAAGTTTCAAACCACATTTGATG 59.085 34.615 0.00 0.00 46.93 3.07
59 60 7.033530 TCGTAAGTTTCAAACCACATTTGAT 57.966 32.000 0.00 0.00 46.93 2.57
60 61 6.094325 ACTCGTAAGTTTCAAACCACATTTGA 59.906 34.615 0.00 0.00 46.48 2.69
61 62 6.262601 ACTCGTAAGTTTCAAACCACATTTG 58.737 36.000 0.00 0.00 43.53 2.32
62 63 6.445357 ACTCGTAAGTTTCAAACCACATTT 57.555 33.333 0.00 0.00 39.48 2.32
63 64 6.094325 TCAACTCGTAAGTTTCAAACCACATT 59.906 34.615 0.00 0.00 43.28 2.71
64 65 5.587043 TCAACTCGTAAGTTTCAAACCACAT 59.413 36.000 0.00 0.00 43.28 3.21
65 66 4.936411 TCAACTCGTAAGTTTCAAACCACA 59.064 37.500 0.00 0.00 43.28 4.17
66 67 5.292589 TCTCAACTCGTAAGTTTCAAACCAC 59.707 40.000 0.00 0.00 43.28 4.16
67 68 5.421277 TCTCAACTCGTAAGTTTCAAACCA 58.579 37.500 0.00 0.00 43.28 3.67
68 69 5.978934 TCTCAACTCGTAAGTTTCAAACC 57.021 39.130 0.00 0.00 43.28 3.27
69 70 6.202188 TCCATCTCAACTCGTAAGTTTCAAAC 59.798 38.462 0.00 0.00 43.28 2.93
70 71 6.285224 TCCATCTCAACTCGTAAGTTTCAAA 58.715 36.000 0.00 0.00 43.28 2.69
71 72 5.849510 TCCATCTCAACTCGTAAGTTTCAA 58.150 37.500 0.00 0.00 43.28 2.69
72 73 5.462530 TCCATCTCAACTCGTAAGTTTCA 57.537 39.130 0.00 0.00 43.28 2.69
73 74 4.327627 GCTCCATCTCAACTCGTAAGTTTC 59.672 45.833 0.00 0.00 43.28 2.78
74 75 4.021016 AGCTCCATCTCAACTCGTAAGTTT 60.021 41.667 0.00 0.00 43.28 2.66
75 76 3.511934 AGCTCCATCTCAACTCGTAAGTT 59.488 43.478 0.00 0.00 46.80 2.66
76 77 3.093057 AGCTCCATCTCAACTCGTAAGT 58.907 45.455 0.00 0.00 37.32 2.24
77 78 3.380004 AGAGCTCCATCTCAACTCGTAAG 59.620 47.826 10.93 0.00 35.59 2.34
78 79 3.357203 AGAGCTCCATCTCAACTCGTAA 58.643 45.455 10.93 0.00 35.59 3.18
79 80 3.006112 AGAGCTCCATCTCAACTCGTA 57.994 47.619 10.93 0.00 35.59 3.43
80 81 1.846007 AGAGCTCCATCTCAACTCGT 58.154 50.000 10.93 0.00 35.59 4.18
81 82 2.685388 TGTAGAGCTCCATCTCAACTCG 59.315 50.000 10.93 0.00 35.59 4.18
82 83 3.699038 ACTGTAGAGCTCCATCTCAACTC 59.301 47.826 10.93 0.00 35.59 3.01
83 84 3.707316 ACTGTAGAGCTCCATCTCAACT 58.293 45.455 10.93 0.00 35.59 3.16
84 85 4.464069 AACTGTAGAGCTCCATCTCAAC 57.536 45.455 10.93 0.00 35.59 3.18
85 86 7.898014 TTATAACTGTAGAGCTCCATCTCAA 57.102 36.000 10.93 0.00 35.59 3.02
86 87 8.484214 AATTATAACTGTAGAGCTCCATCTCA 57.516 34.615 10.93 2.15 35.59 3.27
87 88 9.202273 CAAATTATAACTGTAGAGCTCCATCTC 57.798 37.037 10.93 0.00 0.00 2.75
88 89 8.153550 CCAAATTATAACTGTAGAGCTCCATCT 58.846 37.037 10.93 0.00 0.00 2.90
89 90 7.389053 CCCAAATTATAACTGTAGAGCTCCATC 59.611 40.741 10.93 1.63 0.00 3.51
90 91 7.227156 CCCAAATTATAACTGTAGAGCTCCAT 58.773 38.462 10.93 0.00 0.00 3.41
91 92 6.409234 CCCCAAATTATAACTGTAGAGCTCCA 60.409 42.308 10.93 0.72 0.00 3.86
92 93 5.998363 CCCCAAATTATAACTGTAGAGCTCC 59.002 44.000 10.93 0.00 0.00 4.70
93 94 6.827727 TCCCCAAATTATAACTGTAGAGCTC 58.172 40.000 5.27 5.27 0.00 4.09
94 95 6.183361 CCTCCCCAAATTATAACTGTAGAGCT 60.183 42.308 0.00 0.00 0.00 4.09
95 96 5.998363 CCTCCCCAAATTATAACTGTAGAGC 59.002 44.000 0.00 0.00 0.00 4.09
96 97 6.465894 CCCCTCCCCAAATTATAACTGTAGAG 60.466 46.154 0.00 0.00 0.00 2.43
97 98 5.371472 CCCCTCCCCAAATTATAACTGTAGA 59.629 44.000 0.00 0.00 0.00 2.59
98 99 5.133830 ACCCCTCCCCAAATTATAACTGTAG 59.866 44.000 0.00 0.00 0.00 2.74
99 100 5.047906 ACCCCTCCCCAAATTATAACTGTA 58.952 41.667 0.00 0.00 0.00 2.74
100 101 3.862309 ACCCCTCCCCAAATTATAACTGT 59.138 43.478 0.00 0.00 0.00 3.55
101 102 4.536295 ACCCCTCCCCAAATTATAACTG 57.464 45.455 0.00 0.00 0.00 3.16
102 103 5.133830 CACTACCCCTCCCCAAATTATAACT 59.866 44.000 0.00 0.00 0.00 2.24
103 104 5.133153 TCACTACCCCTCCCCAAATTATAAC 59.867 44.000 0.00 0.00 0.00 1.89
104 105 5.298633 TCACTACCCCTCCCCAAATTATAA 58.701 41.667 0.00 0.00 0.00 0.98
105 106 4.910515 TCACTACCCCTCCCCAAATTATA 58.089 43.478 0.00 0.00 0.00 0.98
106 107 3.754976 TCACTACCCCTCCCCAAATTAT 58.245 45.455 0.00 0.00 0.00 1.28
107 108 3.223940 TCACTACCCCTCCCCAAATTA 57.776 47.619 0.00 0.00 0.00 1.40
108 109 2.068831 TCACTACCCCTCCCCAAATT 57.931 50.000 0.00 0.00 0.00 1.82
109 110 2.068831 TTCACTACCCCTCCCCAAAT 57.931 50.000 0.00 0.00 0.00 2.32
110 111 1.835895 TTTCACTACCCCTCCCCAAA 58.164 50.000 0.00 0.00 0.00 3.28
111 112 1.835895 TTTTCACTACCCCTCCCCAA 58.164 50.000 0.00 0.00 0.00 4.12
112 113 1.638589 CATTTTCACTACCCCTCCCCA 59.361 52.381 0.00 0.00 0.00 4.96
113 114 1.920351 TCATTTTCACTACCCCTCCCC 59.080 52.381 0.00 0.00 0.00 4.81
114 115 2.092375 CCTCATTTTCACTACCCCTCCC 60.092 54.545 0.00 0.00 0.00 4.30
115 116 2.092375 CCCTCATTTTCACTACCCCTCC 60.092 54.545 0.00 0.00 0.00 4.30
116 117 2.092375 CCCCTCATTTTCACTACCCCTC 60.092 54.545 0.00 0.00 0.00 4.30
117 118 1.923148 CCCCTCATTTTCACTACCCCT 59.077 52.381 0.00 0.00 0.00 4.79
118 119 1.920351 TCCCCTCATTTTCACTACCCC 59.080 52.381 0.00 0.00 0.00 4.95
119 120 2.679930 CGTCCCCTCATTTTCACTACCC 60.680 54.545 0.00 0.00 0.00 3.69
120 121 2.629051 CGTCCCCTCATTTTCACTACC 58.371 52.381 0.00 0.00 0.00 3.18
121 122 2.629051 CCGTCCCCTCATTTTCACTAC 58.371 52.381 0.00 0.00 0.00 2.73
122 123 1.557832 CCCGTCCCCTCATTTTCACTA 59.442 52.381 0.00 0.00 0.00 2.74
123 124 0.328258 CCCGTCCCCTCATTTTCACT 59.672 55.000 0.00 0.00 0.00 3.41
124 125 0.679960 CCCCGTCCCCTCATTTTCAC 60.680 60.000 0.00 0.00 0.00 3.18
125 126 1.137594 ACCCCGTCCCCTCATTTTCA 61.138 55.000 0.00 0.00 0.00 2.69
126 127 0.913924 TACCCCGTCCCCTCATTTTC 59.086 55.000 0.00 0.00 0.00 2.29
127 128 0.916809 CTACCCCGTCCCCTCATTTT 59.083 55.000 0.00 0.00 0.00 1.82
128 129 1.632965 GCTACCCCGTCCCCTCATTT 61.633 60.000 0.00 0.00 0.00 2.32
129 130 2.070650 GCTACCCCGTCCCCTCATT 61.071 63.158 0.00 0.00 0.00 2.57
130 131 1.661990 TAGCTACCCCGTCCCCTCAT 61.662 60.000 0.00 0.00 0.00 2.90
131 132 2.294170 CTAGCTACCCCGTCCCCTCA 62.294 65.000 0.00 0.00 0.00 3.86
132 133 1.531128 CTAGCTACCCCGTCCCCTC 60.531 68.421 0.00 0.00 0.00 4.30
133 134 0.995675 TACTAGCTACCCCGTCCCCT 60.996 60.000 0.00 0.00 0.00 4.79
134 135 0.539207 CTACTAGCTACCCCGTCCCC 60.539 65.000 0.00 0.00 0.00 4.81
135 136 0.539207 CCTACTAGCTACCCCGTCCC 60.539 65.000 0.00 0.00 0.00 4.46
136 137 0.539207 CCCTACTAGCTACCCCGTCC 60.539 65.000 0.00 0.00 0.00 4.79
137 138 0.539207 CCCCTACTAGCTACCCCGTC 60.539 65.000 0.00 0.00 0.00 4.79
138 139 1.540667 CCCCTACTAGCTACCCCGT 59.459 63.158 0.00 0.00 0.00 5.28
139 140 1.228800 CCCCCTACTAGCTACCCCG 60.229 68.421 0.00 0.00 0.00 5.73
140 141 0.564671 TTCCCCCTACTAGCTACCCC 59.435 60.000 0.00 0.00 0.00 4.95
141 142 1.502474 TCTTCCCCCTACTAGCTACCC 59.498 57.143 0.00 0.00 0.00 3.69
142 143 3.325359 TTCTTCCCCCTACTAGCTACC 57.675 52.381 0.00 0.00 0.00 3.18
143 144 5.890752 ATTTTCTTCCCCCTACTAGCTAC 57.109 43.478 0.00 0.00 0.00 3.58
144 145 6.903340 AAATTTTCTTCCCCCTACTAGCTA 57.097 37.500 0.00 0.00 0.00 3.32
145 146 5.798239 AAATTTTCTTCCCCCTACTAGCT 57.202 39.130 0.00 0.00 0.00 3.32
146 147 5.826737 GGTAAATTTTCTTCCCCCTACTAGC 59.173 44.000 0.00 0.00 0.00 3.42
147 148 6.363065 GGGTAAATTTTCTTCCCCCTACTAG 58.637 44.000 0.00 0.00 32.66 2.57
148 149 6.331577 GGGTAAATTTTCTTCCCCCTACTA 57.668 41.667 0.00 0.00 32.66 1.82
149 150 5.202746 GGGTAAATTTTCTTCCCCCTACT 57.797 43.478 0.00 0.00 32.66 2.57
155 156 7.490657 AATTACAGGGGTAAATTTTCTTCCC 57.509 36.000 0.00 4.15 42.43 3.97
158 159 9.777008 TCCATAATTACAGGGGTAAATTTTCTT 57.223 29.630 0.00 0.00 42.43 2.52
159 160 9.951866 ATCCATAATTACAGGGGTAAATTTTCT 57.048 29.630 0.00 0.00 42.43 2.52
162 163 9.292195 CGTATCCATAATTACAGGGGTAAATTT 57.708 33.333 0.00 0.00 42.43 1.82
163 164 8.442374 ACGTATCCATAATTACAGGGGTAAATT 58.558 33.333 6.07 0.00 42.43 1.82
164 165 7.981142 ACGTATCCATAATTACAGGGGTAAAT 58.019 34.615 6.07 0.00 42.43 1.40
165 166 7.377696 ACGTATCCATAATTACAGGGGTAAA 57.622 36.000 6.07 0.00 42.43 2.01
166 167 6.999705 ACGTATCCATAATTACAGGGGTAA 57.000 37.500 6.07 0.00 43.25 2.85
167 168 7.009550 TGTACGTATCCATAATTACAGGGGTA 58.990 38.462 0.00 0.00 0.00 3.69
168 169 5.840149 TGTACGTATCCATAATTACAGGGGT 59.160 40.000 0.00 0.00 0.00 4.95
169 170 6.349243 TGTACGTATCCATAATTACAGGGG 57.651 41.667 0.00 0.00 0.00 4.79
170 171 7.039882 GGATGTACGTATCCATAATTACAGGG 58.960 42.308 11.74 0.74 44.90 4.45
182 183 6.698380 ACTGGAATAATGGATGTACGTATCC 58.302 40.000 9.99 9.99 45.59 2.59
183 184 6.812160 GGACTGGAATAATGGATGTACGTATC 59.188 42.308 0.00 0.00 0.00 2.24
184 185 6.571731 CGGACTGGAATAATGGATGTACGTAT 60.572 42.308 0.00 0.00 0.00 3.06
185 186 5.278610 CGGACTGGAATAATGGATGTACGTA 60.279 44.000 0.00 0.00 0.00 3.57
186 187 4.500887 CGGACTGGAATAATGGATGTACGT 60.501 45.833 0.00 0.00 0.00 3.57
187 188 3.987868 CGGACTGGAATAATGGATGTACG 59.012 47.826 0.00 0.00 0.00 3.67
188 189 4.957296 ACGGACTGGAATAATGGATGTAC 58.043 43.478 0.00 0.00 0.00 2.90
189 190 6.734502 TTACGGACTGGAATAATGGATGTA 57.265 37.500 0.00 0.00 0.00 2.29
190 191 5.623956 TTACGGACTGGAATAATGGATGT 57.376 39.130 0.00 0.00 0.00 3.06
191 192 6.467677 AGATTACGGACTGGAATAATGGATG 58.532 40.000 0.00 0.00 0.00 3.51
192 193 6.688073 AGATTACGGACTGGAATAATGGAT 57.312 37.500 0.00 0.00 0.00 3.41
193 194 7.008332 TCTAGATTACGGACTGGAATAATGGA 58.992 38.462 0.00 0.00 0.00 3.41
194 195 7.228314 TCTAGATTACGGACTGGAATAATGG 57.772 40.000 0.00 0.00 0.00 3.16
195 196 9.790389 GTATCTAGATTACGGACTGGAATAATG 57.210 37.037 11.25 0.00 0.00 1.90
196 197 8.968969 GGTATCTAGATTACGGACTGGAATAAT 58.031 37.037 11.25 0.00 0.00 1.28
197 198 7.395489 GGGTATCTAGATTACGGACTGGAATAA 59.605 40.741 11.25 0.00 0.00 1.40
198 199 6.888632 GGGTATCTAGATTACGGACTGGAATA 59.111 42.308 11.25 0.00 0.00 1.75
199 200 5.715753 GGGTATCTAGATTACGGACTGGAAT 59.284 44.000 11.25 0.00 0.00 3.01
200 201 5.075493 GGGTATCTAGATTACGGACTGGAA 58.925 45.833 11.25 0.00 0.00 3.53
201 202 4.508047 GGGGTATCTAGATTACGGACTGGA 60.508 50.000 11.25 0.00 0.00 3.86
202 203 3.762823 GGGGTATCTAGATTACGGACTGG 59.237 52.174 11.25 0.00 0.00 4.00
203 204 4.664392 AGGGGTATCTAGATTACGGACTG 58.336 47.826 11.25 0.00 0.00 3.51
204 205 5.078256 CAAGGGGTATCTAGATTACGGACT 58.922 45.833 11.25 0.00 0.00 3.85
205 206 4.831710 ACAAGGGGTATCTAGATTACGGAC 59.168 45.833 11.25 2.16 0.00 4.79
206 207 5.070823 ACAAGGGGTATCTAGATTACGGA 57.929 43.478 11.25 0.00 0.00 4.69
207 208 7.039223 ACAATACAAGGGGTATCTAGATTACGG 60.039 40.741 11.25 0.00 41.87 4.02
208 209 7.893658 ACAATACAAGGGGTATCTAGATTACG 58.106 38.462 11.25 0.00 41.87 3.18
211 212 8.365647 CGTTACAATACAAGGGGTATCTAGATT 58.634 37.037 11.25 0.00 41.87 2.40
212 213 7.039223 CCGTTACAATACAAGGGGTATCTAGAT 60.039 40.741 10.73 10.73 41.87 1.98
213 214 6.266103 CCGTTACAATACAAGGGGTATCTAGA 59.734 42.308 0.00 0.00 41.87 2.43
214 215 6.453092 CCGTTACAATACAAGGGGTATCTAG 58.547 44.000 0.00 0.00 41.87 2.43
215 216 5.305128 CCCGTTACAATACAAGGGGTATCTA 59.695 44.000 4.97 0.00 43.24 1.98
216 217 4.102054 CCCGTTACAATACAAGGGGTATCT 59.898 45.833 4.97 0.00 43.24 1.98
217 218 4.101430 TCCCGTTACAATACAAGGGGTATC 59.899 45.833 11.45 0.00 46.60 2.24
218 219 4.039339 TCCCGTTACAATACAAGGGGTAT 58.961 43.478 11.45 0.00 46.60 2.73
219 220 3.448934 TCCCGTTACAATACAAGGGGTA 58.551 45.455 11.45 0.00 46.60 3.69
220 221 2.268107 TCCCGTTACAATACAAGGGGT 58.732 47.619 11.45 0.00 46.60 4.95
222 223 4.944930 TCAATTCCCGTTACAATACAAGGG 59.055 41.667 0.00 0.00 40.16 3.95
223 224 6.693315 ATCAATTCCCGTTACAATACAAGG 57.307 37.500 0.00 0.00 0.00 3.61
224 225 7.757526 TCAATCAATTCCCGTTACAATACAAG 58.242 34.615 0.00 0.00 0.00 3.16
225 226 7.689446 TCAATCAATTCCCGTTACAATACAA 57.311 32.000 0.00 0.00 0.00 2.41
226 227 7.554476 TCATCAATCAATTCCCGTTACAATACA 59.446 33.333 0.00 0.00 0.00 2.29
227 228 7.925993 TCATCAATCAATTCCCGTTACAATAC 58.074 34.615 0.00 0.00 0.00 1.89
228 229 8.512966 TTCATCAATCAATTCCCGTTACAATA 57.487 30.769 0.00 0.00 0.00 1.90
229 230 7.403312 TTCATCAATCAATTCCCGTTACAAT 57.597 32.000 0.00 0.00 0.00 2.71
230 231 6.825944 TTCATCAATCAATTCCCGTTACAA 57.174 33.333 0.00 0.00 0.00 2.41
231 232 6.825944 TTTCATCAATCAATTCCCGTTACA 57.174 33.333 0.00 0.00 0.00 2.41
232 233 8.702163 AATTTTCATCAATCAATTCCCGTTAC 57.298 30.769 0.00 0.00 0.00 2.50
234 235 9.369904 CTAAATTTTCATCAATCAATTCCCGTT 57.630 29.630 0.00 0.00 0.00 4.44
235 236 8.748412 TCTAAATTTTCATCAATCAATTCCCGT 58.252 29.630 0.00 0.00 0.00 5.28
236 237 9.754382 ATCTAAATTTTCATCAATCAATTCCCG 57.246 29.630 0.00 0.00 0.00 5.14
354 355 9.158233 CATGCATGAGAAAATATTTTTCCAGTT 57.842 29.630 22.59 0.78 0.00 3.16
355 356 8.533657 TCATGCATGAGAAAATATTTTTCCAGT 58.466 29.630 25.42 4.58 32.11 4.00
356 357 8.936070 TCATGCATGAGAAAATATTTTTCCAG 57.064 30.769 25.42 9.71 32.11 3.86
357 358 9.893634 AATCATGCATGAGAAAATATTTTTCCA 57.106 25.926 31.36 14.45 40.64 3.53
367 368 9.308318 CACAATATTCAATCATGCATGAGAAAA 57.692 29.630 31.36 23.63 40.64 2.29
368 369 7.923878 CCACAATATTCAATCATGCATGAGAAA 59.076 33.333 31.36 23.94 40.64 2.52
369 370 7.068962 ACCACAATATTCAATCATGCATGAGAA 59.931 33.333 31.36 27.88 40.64 2.87
370 371 6.548251 ACCACAATATTCAATCATGCATGAGA 59.452 34.615 31.36 22.08 40.64 3.27
371 372 6.640907 CACCACAATATTCAATCATGCATGAG 59.359 38.462 31.36 20.26 40.64 2.90
372 373 6.461788 CCACCACAATATTCAATCATGCATGA 60.462 38.462 30.47 30.47 41.70 3.07
373 374 5.694458 CCACCACAATATTCAATCATGCATG 59.306 40.000 21.07 21.07 0.00 4.06
374 375 5.221561 CCCACCACAATATTCAATCATGCAT 60.222 40.000 0.00 0.00 0.00 3.96
375 376 4.099727 CCCACCACAATATTCAATCATGCA 59.900 41.667 0.00 0.00 0.00 3.96
376 377 4.099881 ACCCACCACAATATTCAATCATGC 59.900 41.667 0.00 0.00 0.00 4.06
377 378 5.127519 ACACCCACCACAATATTCAATCATG 59.872 40.000 0.00 0.00 0.00 3.07
378 379 5.271598 ACACCCACCACAATATTCAATCAT 58.728 37.500 0.00 0.00 0.00 2.45
379 380 4.671831 ACACCCACCACAATATTCAATCA 58.328 39.130 0.00 0.00 0.00 2.57
380 381 5.418840 AGAACACCCACCACAATATTCAATC 59.581 40.000 0.00 0.00 0.00 2.67
381 382 5.332743 AGAACACCCACCACAATATTCAAT 58.667 37.500 0.00 0.00 0.00 2.57
382 383 4.735369 AGAACACCCACCACAATATTCAA 58.265 39.130 0.00 0.00 0.00 2.69
383 384 4.380843 AGAACACCCACCACAATATTCA 57.619 40.909 0.00 0.00 0.00 2.57
384 385 5.242838 TGAAAGAACACCCACCACAATATTC 59.757 40.000 0.00 0.00 0.00 1.75
385 386 5.144100 TGAAAGAACACCCACCACAATATT 58.856 37.500 0.00 0.00 0.00 1.28
386 387 4.735369 TGAAAGAACACCCACCACAATAT 58.265 39.130 0.00 0.00 0.00 1.28
387 388 4.171878 TGAAAGAACACCCACCACAATA 57.828 40.909 0.00 0.00 0.00 1.90
388 389 3.025322 TGAAAGAACACCCACCACAAT 57.975 42.857 0.00 0.00 0.00 2.71
389 390 2.516227 TGAAAGAACACCCACCACAA 57.484 45.000 0.00 0.00 0.00 3.33
390 391 2.305928 CATGAAAGAACACCCACCACA 58.694 47.619 0.00 0.00 0.00 4.17
391 392 1.000274 GCATGAAAGAACACCCACCAC 60.000 52.381 0.00 0.00 0.00 4.16
392 393 1.327303 GCATGAAAGAACACCCACCA 58.673 50.000 0.00 0.00 0.00 4.17
393 394 1.327303 TGCATGAAAGAACACCCACC 58.673 50.000 0.00 0.00 0.00 4.61
394 395 4.782019 TTATGCATGAAAGAACACCCAC 57.218 40.909 10.16 0.00 0.00 4.61
395 396 5.722263 CAATTATGCATGAAAGAACACCCA 58.278 37.500 10.16 0.00 0.00 4.51
411 412 6.989659 AGGCCTATCTCAAAATGCAATTATG 58.010 36.000 1.29 0.00 33.67 1.90
412 413 7.607615 AAGGCCTATCTCAAAATGCAATTAT 57.392 32.000 5.16 0.00 33.67 1.28
413 414 8.710749 ATAAGGCCTATCTCAAAATGCAATTA 57.289 30.769 5.16 0.00 33.67 1.40
414 415 5.945144 AAGGCCTATCTCAAAATGCAATT 57.055 34.783 5.16 0.00 38.98 2.32
415 416 6.210185 GGATAAGGCCTATCTCAAAATGCAAT 59.790 38.462 5.16 0.00 37.22 3.56
416 417 5.536161 GGATAAGGCCTATCTCAAAATGCAA 59.464 40.000 5.16 0.00 37.22 4.08
417 418 5.072741 GGATAAGGCCTATCTCAAAATGCA 58.927 41.667 5.16 0.00 37.22 3.96
418 419 5.320277 AGGATAAGGCCTATCTCAAAATGC 58.680 41.667 5.16 0.00 37.22 3.56
429 430 9.784376 ATACAAGTATGAATAGGATAAGGCCTA 57.216 33.333 5.16 0.00 44.23 3.93
430 431 8.543774 CATACAAGTATGAATAGGATAAGGCCT 58.456 37.037 13.60 0.00 44.22 5.19
431 432 8.540388 TCATACAAGTATGAATAGGATAAGGCC 58.460 37.037 17.93 0.00 46.22 5.19
445 446 8.363390 AGTATGTCACCTCATCATACAAGTATG 58.637 37.037 12.82 12.82 43.35 2.39
446 447 8.484214 AGTATGTCACCTCATCATACAAGTAT 57.516 34.615 14.14 0.00 43.35 2.12
447 448 7.898014 AGTATGTCACCTCATCATACAAGTA 57.102 36.000 14.14 0.00 43.35 2.24
448 449 6.798427 AGTATGTCACCTCATCATACAAGT 57.202 37.500 14.14 0.00 43.35 3.16
449 450 7.010830 CACAAGTATGTCACCTCATCATACAAG 59.989 40.741 14.14 9.49 43.35 3.16
450 451 6.818142 CACAAGTATGTCACCTCATCATACAA 59.182 38.462 14.14 0.00 43.35 2.41
451 452 6.070824 ACACAAGTATGTCACCTCATCATACA 60.071 38.462 14.14 0.00 43.35 2.29
452 453 6.256539 CACACAAGTATGTCACCTCATCATAC 59.743 42.308 0.00 0.00 42.10 2.39
453 454 6.340522 CACACAAGTATGTCACCTCATCATA 58.659 40.000 0.00 0.00 37.82 2.15
454 455 5.181009 CACACAAGTATGTCACCTCATCAT 58.819 41.667 0.00 0.00 37.82 2.45
455 456 4.568956 CACACAAGTATGTCACCTCATCA 58.431 43.478 0.00 0.00 37.82 3.07
456 457 3.372206 GCACACAAGTATGTCACCTCATC 59.628 47.826 0.00 0.00 37.82 2.92
457 458 3.338249 GCACACAAGTATGTCACCTCAT 58.662 45.455 0.00 0.00 37.82 2.90
458 459 2.549992 GGCACACAAGTATGTCACCTCA 60.550 50.000 0.00 0.00 37.82 3.86
459 460 2.076863 GGCACACAAGTATGTCACCTC 58.923 52.381 0.00 0.00 37.82 3.85
460 461 1.419762 TGGCACACAAGTATGTCACCT 59.580 47.619 0.00 0.00 37.82 4.00
461 462 1.890876 TGGCACACAAGTATGTCACC 58.109 50.000 0.00 0.00 37.82 4.02
471 472 5.777732 ACCCTTTATTTATCTTGGCACACAA 59.222 36.000 0.00 0.00 39.29 3.33
472 473 5.329399 ACCCTTTATTTATCTTGGCACACA 58.671 37.500 0.00 0.00 39.29 3.72
473 474 5.914898 ACCCTTTATTTATCTTGGCACAC 57.085 39.130 0.00 0.00 39.29 3.82
474 475 8.602472 ATTAACCCTTTATTTATCTTGGCACA 57.398 30.769 0.00 0.00 0.00 4.57
488 489 9.470399 GAGGACAAAAGGATTATTAACCCTTTA 57.530 33.333 14.09 0.00 46.29 1.85
500 501 3.117512 ACACCACTGAGGACAAAAGGATT 60.118 43.478 0.00 0.00 41.22 3.01
510 511 0.752658 CACACAGACACCACTGAGGA 59.247 55.000 0.00 0.00 41.22 3.71
525 526 2.421424 CTGAGGGCAAAATAGAGCACAC 59.579 50.000 0.00 0.00 36.38 3.82
533 534 5.076182 TGATTCACAACTGAGGGCAAAATA 58.924 37.500 0.00 0.00 0.00 1.40
534 535 3.896888 TGATTCACAACTGAGGGCAAAAT 59.103 39.130 0.00 0.00 0.00 1.82
581 582 2.282407 TCATGGAACGAGTCGATACGA 58.718 47.619 21.50 7.47 0.00 3.43
584 585 3.442625 AGTGTTCATGGAACGAGTCGATA 59.557 43.478 21.50 2.36 44.55 2.92
626 627 1.162698 GTAAGGGCCGAGTCAAAACC 58.837 55.000 0.00 0.00 0.00 3.27
647 648 3.252284 CTGCCACCTGGTCCCACT 61.252 66.667 0.00 0.00 37.57 4.00
673 674 2.620115 AGAGCAACAGTTTGACCATGTG 59.380 45.455 0.00 0.00 34.24 3.21
679 680 2.224314 GCCACTAGAGCAACAGTTTGAC 59.776 50.000 0.00 0.00 34.24 3.18
683 684 2.158755 ACAAGCCACTAGAGCAACAGTT 60.159 45.455 11.21 0.00 0.00 3.16
695 696 3.986054 TGGGTCTGACAAGCCACT 58.014 55.556 10.38 0.00 41.74 4.00
705 706 1.372087 GCGGCTCTTTGATGGGTCTG 61.372 60.000 0.00 0.00 0.00 3.51
713 714 3.939837 CTGCTCGGCGGCTCTTTGA 62.940 63.158 18.47 0.00 0.00 2.69
724 725 2.178890 GCAATGGCTCTCTGCTCGG 61.179 63.158 0.00 0.00 42.39 4.63
762 763 4.680237 CTCCAAGGACGCGCACCA 62.680 66.667 21.64 3.70 0.00 4.17
765 766 4.742201 GAGCTCCAAGGACGCGCA 62.742 66.667 5.73 0.00 0.00 6.09
774 775 2.299993 CTCACTATTGCGAGCTCCAA 57.700 50.000 16.66 16.66 0.00 3.53
787 788 3.319405 GCCTAGCTGATAGTTGCTCACTA 59.681 47.826 0.00 0.00 42.49 2.74
883 884 0.246635 GGTCACCGCTGCTCTTTCTA 59.753 55.000 0.00 0.00 0.00 2.10
887 888 2.031163 GTGGTCACCGCTGCTCTT 59.969 61.111 0.00 0.00 0.00 2.85
906 907 3.443925 CCCGCTCTCTCTGTCGCA 61.444 66.667 0.00 0.00 0.00 5.10
1101 1103 2.818751 TTGGTGTGTGAGAAACCCTT 57.181 45.000 0.00 0.00 32.70 3.95
1331 1337 3.712881 GGCCACTGTCGTTCGTGC 61.713 66.667 0.00 0.00 0.00 5.34
1362 1368 2.026169 TCGCCCTCTGTCTCTTCTTCTA 60.026 50.000 0.00 0.00 0.00 2.10
1406 1413 3.459232 TCAACATCCTAAGCTCATCGG 57.541 47.619 0.00 0.00 0.00 4.18
1409 1417 5.809001 TCTTGTTCAACATCCTAAGCTCAT 58.191 37.500 0.00 0.00 0.00 2.90
1484 1501 4.443739 CGATTACCCTACCTACAAATGCCA 60.444 45.833 0.00 0.00 0.00 4.92
1499 1516 0.538118 TACACCCAGTGCGATTACCC 59.462 55.000 0.00 0.00 36.98 3.69
1543 1590 6.840090 TCCTCCATAATTCACCCTAATTCA 57.160 37.500 0.00 0.00 31.63 2.57
1544 1591 8.712228 AATTCCTCCATAATTCACCCTAATTC 57.288 34.615 0.00 0.00 31.63 2.17
1545 1592 8.927411 CAAATTCCTCCATAATTCACCCTAATT 58.073 33.333 0.00 0.00 33.69 1.40
1546 1593 8.067488 ACAAATTCCTCCATAATTCACCCTAAT 58.933 33.333 0.00 0.00 0.00 1.73
1547 1594 7.418378 ACAAATTCCTCCATAATTCACCCTAA 58.582 34.615 0.00 0.00 0.00 2.69
1548 1595 6.980577 ACAAATTCCTCCATAATTCACCCTA 58.019 36.000 0.00 0.00 0.00 3.53
1549 1596 5.842339 ACAAATTCCTCCATAATTCACCCT 58.158 37.500 0.00 0.00 0.00 4.34
1550 1597 7.654022 TTACAAATTCCTCCATAATTCACCC 57.346 36.000 0.00 0.00 0.00 4.61
1551 1598 7.068716 AGCTTACAAATTCCTCCATAATTCACC 59.931 37.037 0.00 0.00 0.00 4.02
1552 1599 8.000780 AGCTTACAAATTCCTCCATAATTCAC 57.999 34.615 0.00 0.00 0.00 3.18
1700 1772 8.721478 GCTGTATTTCACTGATCAAAGTTTCTA 58.279 33.333 0.00 0.00 0.00 2.10
1715 1788 5.040635 GCAGAGTAGAGAGCTGTATTTCAC 58.959 45.833 0.00 0.00 32.39 3.18
1722 1795 2.230130 AAGGCAGAGTAGAGAGCTGT 57.770 50.000 0.00 0.00 32.39 4.40
1860 1940 6.912591 CAGAATAGAAAACAGAAAAACACGCT 59.087 34.615 0.00 0.00 0.00 5.07
2078 2176 3.775316 CCAGGTGTAAACCTCTACCAGAT 59.225 47.826 0.00 0.00 38.22 2.90
2301 2422 3.066900 AGTCACGGTCTCACTATGCATAC 59.933 47.826 1.16 0.00 0.00 2.39
2305 2426 2.263077 CAAGTCACGGTCTCACTATGC 58.737 52.381 0.00 0.00 0.00 3.14
2332 2453 6.259167 TCAGTACAAACATGCGTTCTTAAACT 59.741 34.615 0.00 0.00 32.91 2.66
2339 2460 4.783242 ACATTCAGTACAAACATGCGTTC 58.217 39.130 0.00 0.00 32.91 3.95
2434 2558 3.609853 TCTAACCAGAATCATGTGGCAC 58.390 45.455 11.55 11.55 43.76 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.