Multiple sequence alignment - TraesCS4B01G047100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G047100 chr4B 100.000 3962 0 0 885 4846 34278683 34274722 0.000000e+00 7317.0
1 TraesCS4B01G047100 chr4B 100.000 554 0 0 1 554 34279567 34279014 0.000000e+00 1024.0
2 TraesCS4B01G047100 chr4D 93.516 3717 150 36 973 4637 22236347 22232670 0.000000e+00 5445.0
3 TraesCS4B01G047100 chr4D 91.341 358 15 10 210 554 22237077 22236723 4.390000e-130 475.0
4 TraesCS4B01G047100 chr4D 88.068 176 12 5 21 192 22237301 22237131 2.960000e-47 200.0
5 TraesCS4B01G047100 chr4A 91.604 3859 184 49 893 4676 579609561 579613354 0.000000e+00 5203.0
6 TraesCS4B01G047100 chr4A 82.561 367 29 21 210 554 579607660 579608013 1.710000e-74 291.0
7 TraesCS4B01G047100 chr4A 92.157 153 8 1 4071 4223 481920544 481920692 3.800000e-51 213.0
8 TraesCS4B01G047100 chr4A 92.308 78 4 2 4769 4844 579613352 579613429 5.130000e-20 110.0
9 TraesCS4B01G047100 chr4A 90.000 80 8 0 21 100 579609124 579609203 2.390000e-18 104.0
10 TraesCS4B01G047100 chr4A 85.567 97 2 1 458 554 579609455 579609539 1.860000e-14 91.6
11 TraesCS4B01G047100 chr6A 92.157 153 8 1 4071 4223 8884312 8884460 3.800000e-51 213.0
12 TraesCS4B01G047100 chr6A 91.503 153 9 1 4071 4223 616697957 616698105 1.770000e-49 207.0
13 TraesCS4B01G047100 chr6A 91.447 152 9 1 4075 4226 583918425 583918278 6.360000e-49 206.0
14 TraesCS4B01G047100 chr6A 90.850 153 10 1 4071 4223 268258732 268258880 8.220000e-48 202.0
15 TraesCS4B01G047100 chr6A 95.960 99 4 0 4125 4223 569037263 569037361 1.400000e-35 161.0
16 TraesCS4B01G047100 chr3A 91.667 156 9 1 4071 4226 142731839 142731688 3.800000e-51 213.0
17 TraesCS4B01G047100 chr2A 91.667 156 9 1 4071 4226 693627418 693627267 3.800000e-51 213.0
18 TraesCS4B01G047100 chr2A 91.503 153 9 2 4071 4223 415855544 415855692 1.770000e-49 207.0
19 TraesCS4B01G047100 chr1A 91.503 153 9 1 4071 4223 96086447 96086595 1.770000e-49 207.0
20 TraesCS4B01G047100 chr1A 90.196 153 11 1 4071 4223 31509247 31509395 3.830000e-46 196.0
21 TraesCS4B01G047100 chr1A 93.000 100 7 0 4124 4223 567494498 567494597 3.910000e-31 147.0
22 TraesCS4B01G047100 chr5D 94.898 98 5 0 4675 4772 319101180 319101277 2.340000e-33 154.0
23 TraesCS4B01G047100 chrUn 92.857 98 7 0 4674 4771 42259708 42259805 5.060000e-30 143.0
24 TraesCS4B01G047100 chrUn 86.916 107 4 1 4675 4771 318992594 318992700 1.430000e-20 111.0
25 TraesCS4B01G047100 chr7B 89.720 107 10 1 4675 4781 329787756 329787651 8.460000e-28 135.0
26 TraesCS4B01G047100 chr7B 85.345 116 7 5 4675 4780 735033993 735033878 1.430000e-20 111.0
27 TraesCS4B01G047100 chr7B 84.956 113 6 3 4674 4775 55905 55793 2.390000e-18 104.0
28 TraesCS4B01G047100 chr2B 89.899 99 8 1 4674 4772 131896869 131896773 5.090000e-25 126.0
29 TraesCS4B01G047100 chr3B 86.207 116 6 5 4675 4780 425080911 425081026 3.060000e-22 117.0
30 TraesCS4B01G047100 chr6B 87.037 108 4 3 4674 4771 288130928 288130821 3.960000e-21 113.0
31 TraesCS4B01G047100 chr6B 87.037 108 4 1 4674 4771 703475902 703476009 3.960000e-21 113.0
32 TraesCS4B01G047100 chr6B 86.111 108 5 1 4674 4771 703402209 703402316 1.840000e-19 108.0
33 TraesCS4B01G047100 chr7A 83.898 118 9 4 4672 4779 118471268 118471385 2.390000e-18 104.0
34 TraesCS4B01G047100 chr5B 86.000 100 3 4 4674 4773 518488622 518488534 3.990000e-16 97.1
35 TraesCS4B01G047100 chr5A 92.982 57 3 1 4716 4771 607949070 607949126 1.120000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G047100 chr4B 34274722 34279567 4845 True 4170.50 7317 100.000 1 4846 2 chr4B.!!$R1 4845
1 TraesCS4B01G047100 chr4D 22232670 22237301 4631 True 2040.00 5445 90.975 21 4637 3 chr4D.!!$R1 4616
2 TraesCS4B01G047100 chr4A 579607660 579613429 5769 False 1159.92 5203 88.408 21 4844 5 chr4A.!!$F2 4823

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
67 1512 0.038159 ACAGACCAACGCTCTAGCAC 60.038 55.000 2.44 0.0 42.21 4.40 F
171 1620 0.248866 CGGAAACACCACAGGCAAAC 60.249 55.000 0.00 0.0 38.90 2.93 F
1766 3541 1.140589 CAACACCTGCGGCAAACAA 59.859 52.632 3.44 0.0 0.00 2.83 F
3326 5136 0.304705 CGCACGGCAATATCAAGTCC 59.695 55.000 0.00 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1770 3545 0.111398 GTTCGTCGTTTCCGCTGTTC 60.111 55.000 0.00 0.00 0.00 3.18 R
2043 3818 1.257743 TCTTCCCTGAAGTCGACTGG 58.742 55.000 20.85 15.95 40.24 4.00 R
3629 5439 1.220477 GGAGCTCTGGTTCCTCAGC 59.780 63.158 14.64 5.01 39.36 4.26 R
4799 6662 0.036164 CCACGATGAACCAACCAGGA 59.964 55.000 0.00 0.00 41.22 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 1506 1.007734 TGACGACAGACCAACGCTC 60.008 57.895 0.00 0.00 0.00 5.03
63 1508 0.520404 GACGACAGACCAACGCTCTA 59.480 55.000 0.00 0.00 0.00 2.43
67 1512 0.038159 ACAGACCAACGCTCTAGCAC 60.038 55.000 2.44 0.00 42.21 4.40
102 1547 1.448717 GAGGCCGCTCTGACCTTTC 60.449 63.158 0.00 0.00 32.67 2.62
119 1564 0.391130 TTCCAGGCGACCTTTCATCG 60.391 55.000 0.00 0.00 42.55 3.84
171 1620 0.248866 CGGAAACACCACAGGCAAAC 60.249 55.000 0.00 0.00 38.90 2.93
206 1655 9.626045 GAGCAGTAAATAAATATTAACCATGCC 57.374 33.333 0.00 0.00 0.00 4.40
207 1656 8.296713 AGCAGTAAATAAATATTAACCATGCCG 58.703 33.333 0.00 0.00 0.00 5.69
208 1657 7.061789 GCAGTAAATAAATATTAACCATGCCGC 59.938 37.037 0.00 0.00 0.00 6.53
252 1737 3.767806 CGCCTGCTCCAGCTCAGA 61.768 66.667 1.83 0.00 42.66 3.27
263 1748 2.089980 CCAGCTCAGAAACAATCCCTG 58.910 52.381 0.00 0.00 0.00 4.45
266 1751 1.467920 CTCAGAAACAATCCCTGCCC 58.532 55.000 0.00 0.00 0.00 5.36
368 1866 3.308705 AGTCCCGTCCCCGTCAAC 61.309 66.667 0.00 0.00 0.00 3.18
386 1884 1.730851 ACCGGAATCTAGGAATCCCC 58.269 55.000 9.46 0.00 28.32 4.81
949 2458 1.826054 CCAAACCGGAACAGCCACA 60.826 57.895 9.46 0.00 36.56 4.17
1383 3158 2.048127 AGCGTCTTCCTCAACGGC 60.048 61.111 0.00 0.00 39.24 5.68
1446 3221 3.462678 GCCCTCGTCCACCTCTCC 61.463 72.222 0.00 0.00 0.00 3.71
1503 3278 3.691342 CTCGCCAACCTCACCCGA 61.691 66.667 0.00 0.00 0.00 5.14
1755 3530 4.003788 CCCTCGCCGACAACACCT 62.004 66.667 0.00 0.00 0.00 4.00
1766 3541 1.140589 CAACACCTGCGGCAAACAA 59.859 52.632 3.44 0.00 0.00 2.83
1770 3545 4.341502 CCTGCGGCAAACAACCCG 62.342 66.667 3.44 0.00 46.94 5.28
1811 3586 3.243367 CGAAATGACAAGAAGGGCAACAA 60.243 43.478 0.00 0.00 39.74 2.83
1929 3704 1.669115 CACCAAGACACGGGCTCTG 60.669 63.158 0.00 0.00 0.00 3.35
2121 3899 1.079543 CGACTTGGAGGACCTGCTG 60.080 63.158 14.77 9.46 37.04 4.41
2598 4399 5.904941 TCCTAAATATAAGACGTTTCGGCA 58.095 37.500 0.00 0.00 37.34 5.69
2621 4422 4.645588 AGTTTAAATTGAACCAACCGGACA 59.354 37.500 9.46 0.00 35.59 4.02
2642 4443 9.967346 CGGACATCTTATATTTAGAAACAGAGA 57.033 33.333 0.00 0.00 0.00 3.10
2686 4487 7.070447 TCTGTCATGGCTTGATTATCTCTAGTT 59.930 37.037 6.35 0.00 36.54 2.24
2720 4521 0.874175 CGAAGGTGACACGTCAAGCA 60.874 55.000 0.50 0.00 41.85 3.91
2759 4560 9.455847 GATCTTGTTTATTTGCTTGATATCCAC 57.544 33.333 0.00 0.00 0.00 4.02
2760 4561 8.347004 TCTTGTTTATTTGCTTGATATCCACA 57.653 30.769 0.00 0.00 0.00 4.17
2848 4649 3.683847 GCTGCTATTCCTTGTGGTCTGAT 60.684 47.826 0.00 0.00 34.23 2.90
2863 4664 5.701290 GTGGTCTGATACTATGTTTATGGCC 59.299 44.000 0.00 0.00 0.00 5.36
2866 4667 5.409826 GTCTGATACTATGTTTATGGCCAGC 59.590 44.000 13.05 1.70 0.00 4.85
2883 4684 3.488047 GCCAGCATACTTGTATTGCAGTG 60.488 47.826 13.38 0.00 38.84 3.66
3061 4871 8.870160 TTGTGTTGATTAGAGGAAACAAAATG 57.130 30.769 0.00 0.00 34.54 2.32
3063 4873 8.134895 TGTGTTGATTAGAGGAAACAAAATGTC 58.865 33.333 0.00 0.00 34.54 3.06
3069 4879 4.407365 AGAGGAAACAAAATGTCGGGAAT 58.593 39.130 0.00 0.00 0.00 3.01
3089 4899 1.148310 CTGTTGTAGTTGGTGGAGCG 58.852 55.000 0.00 0.00 0.00 5.03
3132 4942 5.049474 GTGCTTGTATCTTCATTGTGTCACA 60.049 40.000 0.18 0.18 0.00 3.58
3326 5136 0.304705 CGCACGGCAATATCAAGTCC 59.695 55.000 0.00 0.00 0.00 3.85
3456 5266 0.337082 TCCAGAGGTTACCGATCCCA 59.663 55.000 0.00 0.00 0.00 4.37
3605 5415 2.433318 GTGCGCTCTGAGTGGACC 60.433 66.667 26.33 12.40 40.54 4.46
3629 5439 1.808945 GAGGTGTTTGACATGGAGCTG 59.191 52.381 0.00 0.00 0.00 4.24
3668 5478 3.555139 CCGAAGAACAGATGATTCAGCTC 59.445 47.826 0.43 0.00 0.00 4.09
3674 5484 4.669206 ACAGATGATTCAGCTCCTACAG 57.331 45.455 0.43 0.00 0.00 2.74
3735 5545 0.249120 GACCATGTCCCATGTCGTCA 59.751 55.000 3.75 0.00 0.00 4.35
3771 5581 1.081892 CAAGATGTCAGGTGGAAGCG 58.918 55.000 0.00 0.00 40.95 4.68
3780 5590 2.391389 GGTGGAAGCGCCGAAGAAG 61.391 63.158 2.29 0.00 40.66 2.85
3806 5619 1.166531 AACAACAGAGCGCCCTGAAC 61.167 55.000 26.78 0.00 37.59 3.18
3823 5636 2.281345 CCAGGGCGATGAGATGGC 60.281 66.667 0.00 0.00 0.00 4.40
3850 5663 2.121538 CCTCCTCGCCGTGATCTCA 61.122 63.158 0.00 0.00 0.00 3.27
3858 5671 1.728490 GCCGTGATCTCAAATGGCCC 61.728 60.000 0.00 0.00 35.88 5.80
3859 5672 0.394216 CCGTGATCTCAAATGGCCCA 60.394 55.000 0.00 0.00 0.00 5.36
3878 5691 1.484444 AAGAGAAAGGAGCCGGCTGT 61.484 55.000 38.41 19.13 0.00 4.40
3879 5692 1.743252 GAGAAAGGAGCCGGCTGTG 60.743 63.158 38.41 0.00 0.00 3.66
3880 5693 3.435186 GAAAGGAGCCGGCTGTGC 61.435 66.667 38.41 20.48 0.00 4.57
3881 5694 3.909086 GAAAGGAGCCGGCTGTGCT 62.909 63.158 38.41 20.19 43.03 4.40
3917 5730 4.273480 CCACATTCATTCCGTTCATAGACC 59.727 45.833 0.00 0.00 0.00 3.85
3929 5742 3.443099 TCATAGACCTGACGAATGCTG 57.557 47.619 0.00 0.00 0.00 4.41
3930 5743 2.760650 TCATAGACCTGACGAATGCTGT 59.239 45.455 0.00 0.00 0.00 4.40
3931 5744 2.941453 TAGACCTGACGAATGCTGTC 57.059 50.000 0.00 0.00 36.88 3.51
3932 5745 1.261480 AGACCTGACGAATGCTGTCT 58.739 50.000 0.00 0.00 37.26 3.41
3933 5746 2.447443 AGACCTGACGAATGCTGTCTA 58.553 47.619 0.00 0.00 37.26 2.59
3934 5747 3.027412 AGACCTGACGAATGCTGTCTAT 58.973 45.455 0.00 0.00 37.26 1.98
3935 5748 3.067461 AGACCTGACGAATGCTGTCTATC 59.933 47.826 0.00 0.00 37.26 2.08
3936 5749 3.027412 ACCTGACGAATGCTGTCTATCT 58.973 45.455 0.00 0.00 37.26 1.98
4013 5830 1.056464 ATTCGTTGTCGTCGTCGTCG 61.056 55.000 5.50 5.50 38.33 5.12
4014 5831 2.360091 TTCGTTGTCGTCGTCGTCGT 62.360 55.000 11.41 0.00 38.33 4.34
4015 5832 2.405212 CGTTGTCGTCGTCGTCGTC 61.405 63.158 11.41 6.94 38.33 4.20
4016 5833 2.128017 TTGTCGTCGTCGTCGTCG 60.128 61.111 14.18 14.18 46.06 5.12
4017 5834 2.870341 TTGTCGTCGTCGTCGTCGT 61.870 57.895 18.44 0.00 45.27 4.34
4018 5835 2.566765 GTCGTCGTCGTCGTCGTC 60.567 66.667 18.44 11.28 45.27 4.20
4064 5882 1.451337 TTGTGTGGTGGGTGATTGCG 61.451 55.000 0.00 0.00 0.00 4.85
4065 5883 1.896660 GTGTGGTGGGTGATTGCGT 60.897 57.895 0.00 0.00 0.00 5.24
4066 5884 1.896183 TGTGGTGGGTGATTGCGTG 60.896 57.895 0.00 0.00 0.00 5.34
4096 5914 2.694628 GTTTAGGGATGGAATGCATGCA 59.305 45.455 25.04 25.04 35.75 3.96
4097 5915 2.984435 TAGGGATGGAATGCATGCAT 57.016 45.000 27.46 27.46 43.60 3.96
4098 5916 1.338107 AGGGATGGAATGCATGCATG 58.662 50.000 32.79 22.70 40.61 4.06
4118 5936 1.133253 CCGACTGTGCGATTGCTTG 59.867 57.895 6.47 0.00 43.34 4.01
4122 5940 2.778659 GACTGTGCGATTGCTTGATTC 58.221 47.619 6.47 0.00 43.34 2.52
4199 6017 1.037030 TCAGCCCGATCAAATTGCCC 61.037 55.000 0.00 0.00 0.00 5.36
4259 6080 0.250513 GGTGTCTGTCCTGTGGATCC 59.749 60.000 4.20 4.20 32.73 3.36
4316 6139 2.362760 TGGGTCATGCATGGTGCC 60.363 61.111 25.97 22.59 44.23 5.01
4317 6140 3.149648 GGGTCATGCATGGTGCCC 61.150 66.667 26.97 26.97 44.23 5.36
4361 6184 2.027625 GCTACTGCGTGGTGTGTCC 61.028 63.158 0.00 0.00 0.00 4.02
4369 6192 1.081376 GTGGTGTGTCCGTCTCGAG 60.081 63.158 5.93 5.93 39.52 4.04
4459 6305 4.701651 ACTGAATTGAATTTCGCCTGATGA 59.298 37.500 0.00 0.00 0.00 2.92
4523 6369 5.772393 TGATTAACAGTTGGGAGGTACAT 57.228 39.130 0.00 0.00 0.00 2.29
4639 6493 2.435805 TGCTGTCTAGATGACCCAATCC 59.564 50.000 0.00 0.00 44.75 3.01
4676 6539 0.808755 CGATTTGTTGGCCCTGGTAC 59.191 55.000 0.00 0.00 0.00 3.34
4677 6540 1.613255 CGATTTGTTGGCCCTGGTACT 60.613 52.381 0.00 0.00 0.00 2.73
4678 6541 2.092323 GATTTGTTGGCCCTGGTACTC 58.908 52.381 0.00 0.00 0.00 2.59
4679 6542 0.111639 TTTGTTGGCCCTGGTACTCC 59.888 55.000 0.00 0.00 0.00 3.85
4680 6543 1.785353 TTGTTGGCCCTGGTACTCCC 61.785 60.000 0.00 0.00 0.00 4.30
4681 6544 1.923909 GTTGGCCCTGGTACTCCCT 60.924 63.158 0.00 0.00 0.00 4.20
4682 6545 1.615424 TTGGCCCTGGTACTCCCTC 60.615 63.158 0.00 0.00 0.00 4.30
4683 6546 2.768769 GGCCCTGGTACTCCCTCC 60.769 72.222 0.00 0.00 0.00 4.30
4684 6547 3.155167 GCCCTGGTACTCCCTCCG 61.155 72.222 0.00 0.00 0.00 4.63
4685 6548 2.363361 CCCTGGTACTCCCTCCGT 59.637 66.667 0.00 0.00 0.00 4.69
4686 6549 1.305887 CCCTGGTACTCCCTCCGTT 60.306 63.158 0.00 0.00 0.00 4.44
4687 6550 0.908180 CCCTGGTACTCCCTCCGTTT 60.908 60.000 0.00 0.00 0.00 3.60
4688 6551 0.535797 CCTGGTACTCCCTCCGTTTC 59.464 60.000 0.00 0.00 0.00 2.78
4689 6552 1.263356 CTGGTACTCCCTCCGTTTCA 58.737 55.000 0.00 0.00 0.00 2.69
4690 6553 1.621814 CTGGTACTCCCTCCGTTTCAA 59.378 52.381 0.00 0.00 0.00 2.69
4691 6554 2.038033 CTGGTACTCCCTCCGTTTCAAA 59.962 50.000 0.00 0.00 0.00 2.69
4692 6555 2.640826 TGGTACTCCCTCCGTTTCAAAT 59.359 45.455 0.00 0.00 0.00 2.32
4693 6556 3.073356 TGGTACTCCCTCCGTTTCAAATT 59.927 43.478 0.00 0.00 0.00 1.82
4694 6557 4.286549 TGGTACTCCCTCCGTTTCAAATTA 59.713 41.667 0.00 0.00 0.00 1.40
4695 6558 4.633126 GGTACTCCCTCCGTTTCAAATTAC 59.367 45.833 0.00 0.00 0.00 1.89
4696 6559 3.682696 ACTCCCTCCGTTTCAAATTACC 58.317 45.455 0.00 0.00 0.00 2.85
4697 6560 3.014623 CTCCCTCCGTTTCAAATTACCC 58.985 50.000 0.00 0.00 0.00 3.69
4698 6561 1.741145 CCCTCCGTTTCAAATTACCCG 59.259 52.381 0.00 0.00 0.00 5.28
4699 6562 2.429478 CCTCCGTTTCAAATTACCCGT 58.571 47.619 0.00 0.00 0.00 5.28
4700 6563 2.417586 CCTCCGTTTCAAATTACCCGTC 59.582 50.000 0.00 0.00 0.00 4.79
4701 6564 2.067766 TCCGTTTCAAATTACCCGTCG 58.932 47.619 0.00 0.00 0.00 5.12
4702 6565 1.464521 CCGTTTCAAATTACCCGTCGC 60.465 52.381 0.00 0.00 0.00 5.19
4703 6566 1.461897 CGTTTCAAATTACCCGTCGCT 59.538 47.619 0.00 0.00 0.00 4.93
4704 6567 2.723618 CGTTTCAAATTACCCGTCGCTG 60.724 50.000 0.00 0.00 0.00 5.18
4705 6568 2.459060 TTCAAATTACCCGTCGCTGA 57.541 45.000 0.00 0.00 0.00 4.26
4706 6569 2.459060 TCAAATTACCCGTCGCTGAA 57.541 45.000 0.00 0.00 0.00 3.02
4707 6570 2.768698 TCAAATTACCCGTCGCTGAAA 58.231 42.857 0.00 0.00 0.00 2.69
4708 6571 3.340034 TCAAATTACCCGTCGCTGAAAT 58.660 40.909 0.00 0.00 0.00 2.17
4709 6572 3.126171 TCAAATTACCCGTCGCTGAAATG 59.874 43.478 0.00 0.00 0.00 2.32
4710 6573 1.663695 ATTACCCGTCGCTGAAATGG 58.336 50.000 0.00 0.00 0.00 3.16
4711 6574 0.609151 TTACCCGTCGCTGAAATGGA 59.391 50.000 0.00 0.00 0.00 3.41
4712 6575 0.828022 TACCCGTCGCTGAAATGGAT 59.172 50.000 0.00 0.00 0.00 3.41
4713 6576 0.744414 ACCCGTCGCTGAAATGGATG 60.744 55.000 0.00 0.00 0.00 3.51
4714 6577 0.744414 CCCGTCGCTGAAATGGATGT 60.744 55.000 0.00 0.00 0.00 3.06
4715 6578 1.472552 CCCGTCGCTGAAATGGATGTA 60.473 52.381 0.00 0.00 0.00 2.29
4716 6579 2.483876 CCGTCGCTGAAATGGATGTAT 58.516 47.619 0.00 0.00 0.00 2.29
4717 6580 2.476619 CCGTCGCTGAAATGGATGTATC 59.523 50.000 0.00 0.00 0.00 2.24
4718 6581 3.384668 CGTCGCTGAAATGGATGTATCT 58.615 45.455 0.00 0.00 0.00 1.98
4719 6582 4.546570 CGTCGCTGAAATGGATGTATCTA 58.453 43.478 0.00 0.00 0.00 1.98
4720 6583 4.618912 CGTCGCTGAAATGGATGTATCTAG 59.381 45.833 0.00 0.00 0.00 2.43
4721 6584 5.562890 CGTCGCTGAAATGGATGTATCTAGA 60.563 44.000 0.00 0.00 0.00 2.43
4722 6585 6.216569 GTCGCTGAAATGGATGTATCTAGAA 58.783 40.000 0.00 0.00 0.00 2.10
4723 6586 6.870965 GTCGCTGAAATGGATGTATCTAGAAT 59.129 38.462 0.00 0.00 0.00 2.40
4724 6587 7.386299 GTCGCTGAAATGGATGTATCTAGAATT 59.614 37.037 0.00 0.00 0.00 2.17
4725 6588 8.585018 TCGCTGAAATGGATGTATCTAGAATTA 58.415 33.333 0.00 0.00 0.00 1.40
4726 6589 9.208022 CGCTGAAATGGATGTATCTAGAATTAA 57.792 33.333 0.00 0.00 0.00 1.40
4745 6608 9.687210 AGAATTAAAATACATCTATACGTGCGA 57.313 29.630 0.00 0.00 0.00 5.10
4746 6609 9.723299 GAATTAAAATACATCTATACGTGCGAC 57.277 33.333 0.00 0.00 0.00 5.19
4747 6610 8.806177 ATTAAAATACATCTATACGTGCGACA 57.194 30.769 0.00 0.00 0.00 4.35
4748 6611 8.631676 TTAAAATACATCTATACGTGCGACAA 57.368 30.769 0.00 0.00 0.00 3.18
4749 6612 6.749216 AAATACATCTATACGTGCGACAAG 57.251 37.500 0.00 0.00 0.00 3.16
4750 6613 3.777465 ACATCTATACGTGCGACAAGT 57.223 42.857 0.00 0.00 0.00 3.16
4751 6614 4.888038 ACATCTATACGTGCGACAAGTA 57.112 40.909 0.00 7.72 33.49 2.24
4752 6615 5.239359 ACATCTATACGTGCGACAAGTAA 57.761 39.130 0.00 0.00 32.82 2.24
4753 6616 5.828747 ACATCTATACGTGCGACAAGTAAT 58.171 37.500 0.00 0.00 32.82 1.89
4754 6617 6.270815 ACATCTATACGTGCGACAAGTAATT 58.729 36.000 0.00 0.00 32.82 1.40
4755 6618 6.417044 ACATCTATACGTGCGACAAGTAATTC 59.583 38.462 0.00 0.00 32.82 2.17
4756 6619 4.965762 TCTATACGTGCGACAAGTAATTCG 59.034 41.667 0.00 0.00 32.82 3.34
4757 6620 1.065358 ACGTGCGACAAGTAATTCGG 58.935 50.000 0.00 0.00 35.73 4.30
4758 6621 1.336148 ACGTGCGACAAGTAATTCGGA 60.336 47.619 0.00 0.00 35.73 4.55
4759 6622 1.722464 CGTGCGACAAGTAATTCGGAA 59.278 47.619 0.00 0.00 37.32 4.30
4760 6623 2.471749 CGTGCGACAAGTAATTCGGAAC 60.472 50.000 0.00 0.00 37.32 3.62
4798 6661 3.027292 GCTCAACGAAAACCGGCA 58.973 55.556 0.00 0.00 43.93 5.69
4799 6662 1.579429 GCTCAACGAAAACCGGCAT 59.421 52.632 0.00 0.00 43.93 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.100631 GGATTGGACTGTCGTGCGG 61.101 63.158 1.07 0.00 33.68 5.69
8 9 0.948623 TTGGATTGGACTGTCGTGCG 60.949 55.000 1.07 0.00 33.68 5.34
9 10 1.398390 GATTGGATTGGACTGTCGTGC 59.602 52.381 1.07 0.00 0.00 5.34
10 11 2.009774 GGATTGGATTGGACTGTCGTG 58.990 52.381 1.07 0.00 0.00 4.35
12 13 2.401583 TGGATTGGATTGGACTGTCG 57.598 50.000 1.07 0.00 0.00 4.35
13 14 2.424956 GCTTGGATTGGATTGGACTGTC 59.575 50.000 0.00 0.00 0.00 3.51
14 15 2.450476 GCTTGGATTGGATTGGACTGT 58.550 47.619 0.00 0.00 0.00 3.55
15 16 1.402968 CGCTTGGATTGGATTGGACTG 59.597 52.381 0.00 0.00 0.00 3.51
16 17 1.004745 ACGCTTGGATTGGATTGGACT 59.995 47.619 0.00 0.00 0.00 3.85
17 18 1.401905 GACGCTTGGATTGGATTGGAC 59.598 52.381 0.00 0.00 0.00 4.02
18 19 1.681780 GGACGCTTGGATTGGATTGGA 60.682 52.381 0.00 0.00 0.00 3.53
19 20 0.740737 GGACGCTTGGATTGGATTGG 59.259 55.000 0.00 0.00 0.00 3.16
54 1499 1.005037 TGGTGGTGCTAGAGCGTTG 60.005 57.895 0.00 0.00 45.83 4.10
55 1500 1.293498 CTGGTGGTGCTAGAGCGTT 59.707 57.895 0.00 0.00 45.83 4.84
61 1506 1.512926 GTGTTGACTGGTGGTGCTAG 58.487 55.000 0.00 0.00 0.00 3.42
63 1508 1.523711 CGTGTTGACTGGTGGTGCT 60.524 57.895 0.00 0.00 0.00 4.40
67 1512 0.319900 CTCTCCGTGTTGACTGGTGG 60.320 60.000 0.00 0.00 0.00 4.61
102 1547 1.815421 CCGATGAAAGGTCGCCTGG 60.815 63.158 0.00 0.00 37.75 4.45
148 1597 3.353836 CTGTGGTGTTTCCGGCGG 61.354 66.667 22.51 22.51 39.52 6.13
206 1655 0.725686 CACTCTCTGCCTGATTTGCG 59.274 55.000 0.00 0.00 0.00 4.85
207 1656 2.105006 TCACTCTCTGCCTGATTTGC 57.895 50.000 0.00 0.00 0.00 3.68
208 1657 4.070716 AGTTTCACTCTCTGCCTGATTTG 58.929 43.478 0.00 0.00 0.00 2.32
237 1722 0.035881 TGTTTCTGAGCTGGAGCAGG 59.964 55.000 0.00 0.00 45.16 4.85
252 1737 2.679996 GGCGGGCAGGGATTGTTT 60.680 61.111 0.00 0.00 0.00 2.83
368 1866 0.984995 GGGGGATTCCTAGATTCCGG 59.015 60.000 2.01 0.00 34.14 5.14
411 1909 1.282875 GTTGGCTCGTCTGTTTGGC 59.717 57.895 0.00 0.00 0.00 4.52
1040 2815 4.135153 GCGCGAGGAGGAAGAGCA 62.135 66.667 12.10 0.00 0.00 4.26
1041 2816 3.766496 GAGCGCGAGGAGGAAGAGC 62.766 68.421 12.10 0.00 0.00 4.09
1042 2817 2.411290 GAGCGCGAGGAGGAAGAG 59.589 66.667 12.10 0.00 0.00 2.85
1043 2818 3.141488 GGAGCGCGAGGAGGAAGA 61.141 66.667 12.10 0.00 0.00 2.87
1044 2819 3.132481 GAGGAGCGCGAGGAGGAAG 62.132 68.421 12.10 0.00 0.00 3.46
1045 2820 3.141488 GAGGAGCGCGAGGAGGAA 61.141 66.667 12.10 0.00 0.00 3.36
1335 3110 3.148279 ATGGAGGCGAGGTCGGAC 61.148 66.667 0.00 0.00 40.23 4.79
1336 3111 3.147595 CATGGAGGCGAGGTCGGA 61.148 66.667 0.89 0.00 40.23 4.55
1500 3275 1.803519 GAGCAGCGTCTTGAGTCGG 60.804 63.158 0.36 0.00 0.00 4.79
1503 3278 1.589113 GAGGAGCAGCGTCTTGAGT 59.411 57.895 0.00 0.00 0.00 3.41
1647 3422 1.437986 GGACGACATCCCGAGGAAG 59.562 63.158 0.00 0.00 42.46 3.46
1755 3530 2.829003 TTCGGGTTGTTTGCCGCA 60.829 55.556 0.00 0.00 0.00 5.69
1770 3545 0.111398 GTTCGTCGTTTCCGCTGTTC 60.111 55.000 0.00 0.00 0.00 3.18
1929 3704 4.593864 GACGGAGGCGGCATCTCC 62.594 72.222 14.76 14.02 45.46 3.71
2038 3813 4.373116 TGAAGTCGACTGGCCCGC 62.373 66.667 20.85 5.44 0.00 6.13
2039 3814 2.125912 CTGAAGTCGACTGGCCCG 60.126 66.667 20.85 4.49 0.00 6.13
2040 3815 2.266055 CCTGAAGTCGACTGGCCC 59.734 66.667 20.85 9.49 0.00 5.80
2043 3818 1.257743 TCTTCCCTGAAGTCGACTGG 58.742 55.000 20.85 15.95 40.24 4.00
2046 3821 1.273886 AGCTTCTTCCCTGAAGTCGAC 59.726 52.381 7.70 7.70 43.74 4.20
2439 4240 0.877649 ACTCACAAGCACGAGCACAG 60.878 55.000 7.77 0.00 45.49 3.66
2477 4278 3.060020 CTACCATCGCCACGGACGT 62.060 63.158 0.00 0.00 0.00 4.34
2589 4390 4.147479 GGTTCAATTTAAACTGCCGAAACG 59.853 41.667 0.00 0.00 0.00 3.60
2594 4395 3.738791 GGTTGGTTCAATTTAAACTGCCG 59.261 43.478 0.00 0.00 0.00 5.69
2598 4399 4.645588 TGTCCGGTTGGTTCAATTTAAACT 59.354 37.500 0.00 0.00 36.30 2.66
2645 4446 7.398618 AGCCATGACAGATGTAGTAATAGCTAT 59.601 37.037 0.00 0.00 0.00 2.97
2686 4487 2.099592 ACCTTCGACAAGACACACGTAA 59.900 45.455 0.00 0.00 0.00 3.18
2848 4649 6.433847 AGTATGCTGGCCATAAACATAGTA 57.566 37.500 5.51 0.00 38.11 1.82
2863 4664 5.122869 AGTTCACTGCAATACAAGTATGCTG 59.877 40.000 13.97 13.97 0.00 4.41
2913 4714 6.395629 ACATTCTGAAAAATTGGAGCAGATG 58.604 36.000 0.00 0.00 35.73 2.90
3021 4822 7.994425 ATCAACACAAAGTATACAATGGACA 57.006 32.000 5.50 0.00 0.00 4.02
3061 4871 3.000727 CCAACTACAACAGATTCCCGAC 58.999 50.000 0.00 0.00 0.00 4.79
3063 4873 2.742053 CACCAACTACAACAGATTCCCG 59.258 50.000 0.00 0.00 0.00 5.14
3069 4879 1.270094 CGCTCCACCAACTACAACAGA 60.270 52.381 0.00 0.00 0.00 3.41
3108 4918 5.049474 TGTGACACAATGAAGATACAAGCAC 60.049 40.000 5.62 0.00 0.00 4.40
3111 4921 7.239271 GTCATGTGACACAATGAAGATACAAG 58.761 38.462 13.23 0.00 44.18 3.16
3132 4942 3.199946 AGGTTCATCCGTTACATGGTCAT 59.800 43.478 0.00 0.00 41.99 3.06
3326 5136 3.891977 TCTTCGACAGGAGGATATTGGAG 59.108 47.826 0.00 0.00 0.00 3.86
3456 5266 1.229658 CCTTCTGGGACACCCTCCT 60.230 63.158 8.34 0.00 45.70 3.69
3539 5349 1.511768 GCCCTCGTCGTTAAGAGCT 59.488 57.895 0.00 0.00 33.39 4.09
3605 5415 1.497278 CATGTCAAACACCTCCGCG 59.503 57.895 0.00 0.00 0.00 6.46
3629 5439 1.220477 GGAGCTCTGGTTCCTCAGC 59.780 63.158 14.64 5.01 39.36 4.26
3668 5478 2.095466 GCAGTCTATAGCGAGCTGTAGG 60.095 54.545 22.58 11.93 38.02 3.18
3735 5545 1.271934 CTTGATCTCCTCGATCCGCAT 59.728 52.381 0.00 0.00 46.52 4.73
3771 5581 1.442769 TGTTGATCAGCTTCTTCGGC 58.557 50.000 11.09 0.00 0.00 5.54
3780 5590 0.179205 GCGCTCTGTTGTTGATCAGC 60.179 55.000 0.00 2.05 0.00 4.26
3806 5619 2.281345 GCCATCTCATCGCCCTGG 60.281 66.667 0.00 0.00 0.00 4.45
3850 5663 2.812658 CTCCTTTCTCTTGGGCCATTT 58.187 47.619 7.26 0.00 0.00 2.32
3858 5671 1.023513 CAGCCGGCTCCTTTCTCTTG 61.024 60.000 30.29 8.52 0.00 3.02
3859 5672 1.298014 CAGCCGGCTCCTTTCTCTT 59.702 57.895 30.29 0.00 0.00 2.85
3890 5703 1.133025 GAACGGAATGAATGTGGGCTG 59.867 52.381 0.00 0.00 0.00 4.85
3917 5730 4.930963 AGAAGATAGACAGCATTCGTCAG 58.069 43.478 0.00 0.00 35.77 3.51
3929 5742 3.364946 GCCGTCGAAGAAGAAGATAGAC 58.635 50.000 0.00 0.00 38.59 2.59
3930 5743 2.031807 CGCCGTCGAAGAAGAAGATAGA 59.968 50.000 0.00 0.00 38.59 1.98
3931 5744 2.376956 CGCCGTCGAAGAAGAAGATAG 58.623 52.381 0.00 0.00 38.59 2.08
3932 5745 1.065102 CCGCCGTCGAAGAAGAAGATA 59.935 52.381 0.00 0.00 38.59 1.98
3933 5746 0.179134 CCGCCGTCGAAGAAGAAGAT 60.179 55.000 0.00 0.00 38.59 2.40
3934 5747 1.211969 CCGCCGTCGAAGAAGAAGA 59.788 57.895 0.00 0.00 38.59 2.87
3935 5748 0.798771 CTCCGCCGTCGAAGAAGAAG 60.799 60.000 0.00 0.00 38.59 2.85
3936 5749 1.211969 CTCCGCCGTCGAAGAAGAA 59.788 57.895 0.00 0.00 38.59 2.52
3966 5782 5.171476 TGTTCGCTAAAAGGAAGAGATGAG 58.829 41.667 0.00 0.00 0.00 2.90
4013 5830 2.030457 CAGTCAACAACACCAAGACGAC 59.970 50.000 0.00 0.00 34.56 4.34
4014 5831 2.093921 TCAGTCAACAACACCAAGACGA 60.094 45.455 0.00 0.00 34.56 4.20
4015 5832 2.030457 GTCAGTCAACAACACCAAGACG 59.970 50.000 0.00 0.00 34.56 4.18
4016 5833 3.063997 CAGTCAGTCAACAACACCAAGAC 59.936 47.826 0.00 0.00 0.00 3.01
4017 5834 3.270027 CAGTCAGTCAACAACACCAAGA 58.730 45.455 0.00 0.00 0.00 3.02
4018 5835 3.009723 ACAGTCAGTCAACAACACCAAG 58.990 45.455 0.00 0.00 0.00 3.61
4064 5882 0.475044 TCCCTAAACACCACCACCAC 59.525 55.000 0.00 0.00 0.00 4.16
4065 5883 1.074727 CATCCCTAAACACCACCACCA 59.925 52.381 0.00 0.00 0.00 4.17
4066 5884 1.615919 CCATCCCTAAACACCACCACC 60.616 57.143 0.00 0.00 0.00 4.61
4096 5914 2.108514 CAATCGCACAGTCGGGCAT 61.109 57.895 0.00 0.00 0.00 4.40
4097 5915 2.741985 CAATCGCACAGTCGGGCA 60.742 61.111 0.00 0.00 0.00 5.36
4098 5916 4.166011 GCAATCGCACAGTCGGGC 62.166 66.667 0.00 0.00 38.36 6.13
4099 5917 2.034879 AAGCAATCGCACAGTCGGG 61.035 57.895 0.00 0.00 42.27 5.14
4118 5936 6.921332 GCTAGAACAATAGCTAGACGAATC 57.079 41.667 0.00 0.00 43.96 2.52
4199 6017 0.317519 GTTTTGGCCAACGAGTTCCG 60.318 55.000 20.35 0.00 45.44 4.30
4213 6031 5.288804 CAGGTAAACTCACCAATGGTTTTG 58.711 41.667 0.16 0.00 41.40 2.44
4330 6153 3.127895 ACGCAGTAGCTTTCAACAACAAA 59.872 39.130 0.00 0.00 41.94 2.83
4459 6305 2.125912 CAGGCAAGTCGCTACGCT 60.126 61.111 0.00 0.00 41.91 5.07
4462 6308 1.811679 GGAGCAGGCAAGTCGCTAC 60.812 63.158 0.00 0.00 41.91 3.58
4523 6369 0.852842 GGATCCCATCCCAACATGGA 59.147 55.000 0.00 0.00 45.79 3.41
4536 6382 1.742831 CTCTCTCGATCGATGGATCCC 59.257 57.143 19.78 0.00 45.16 3.85
4537 6383 1.132262 GCTCTCTCGATCGATGGATCC 59.868 57.143 19.78 4.20 45.16 3.36
4538 6384 1.809547 TGCTCTCTCGATCGATGGATC 59.190 52.381 19.78 14.65 44.63 3.36
4566 6412 2.036604 TCATCAAGCGTGTACAGAACCA 59.963 45.455 0.00 0.00 0.00 3.67
4676 6539 3.014623 GGGTAATTTGAAACGGAGGGAG 58.985 50.000 0.00 0.00 0.00 4.30
4677 6540 2.616001 CGGGTAATTTGAAACGGAGGGA 60.616 50.000 0.00 0.00 0.00 4.20
4678 6541 1.741145 CGGGTAATTTGAAACGGAGGG 59.259 52.381 0.00 0.00 0.00 4.30
4679 6542 2.417586 GACGGGTAATTTGAAACGGAGG 59.582 50.000 0.00 0.00 0.00 4.30
4680 6543 2.093152 CGACGGGTAATTTGAAACGGAG 59.907 50.000 0.00 0.00 0.00 4.63
4681 6544 2.067766 CGACGGGTAATTTGAAACGGA 58.932 47.619 0.00 0.00 0.00 4.69
4682 6545 1.464521 GCGACGGGTAATTTGAAACGG 60.465 52.381 0.00 0.00 0.00 4.44
4683 6546 1.461897 AGCGACGGGTAATTTGAAACG 59.538 47.619 0.00 0.00 0.00 3.60
4684 6547 2.481185 TCAGCGACGGGTAATTTGAAAC 59.519 45.455 0.00 0.00 0.00 2.78
4685 6548 2.768698 TCAGCGACGGGTAATTTGAAA 58.231 42.857 0.00 0.00 0.00 2.69
4686 6549 2.459060 TCAGCGACGGGTAATTTGAA 57.541 45.000 0.00 0.00 0.00 2.69
4687 6550 2.459060 TTCAGCGACGGGTAATTTGA 57.541 45.000 0.00 0.00 0.00 2.69
4688 6551 3.425404 CATTTCAGCGACGGGTAATTTG 58.575 45.455 0.00 0.00 0.00 2.32
4689 6552 2.422127 CCATTTCAGCGACGGGTAATTT 59.578 45.455 0.00 0.00 0.00 1.82
4690 6553 2.014128 CCATTTCAGCGACGGGTAATT 58.986 47.619 0.00 0.00 0.00 1.40
4691 6554 1.208535 TCCATTTCAGCGACGGGTAAT 59.791 47.619 0.00 0.00 0.00 1.89
4692 6555 0.609151 TCCATTTCAGCGACGGGTAA 59.391 50.000 0.00 0.00 0.00 2.85
4693 6556 0.828022 ATCCATTTCAGCGACGGGTA 59.172 50.000 0.00 0.00 0.00 3.69
4694 6557 0.744414 CATCCATTTCAGCGACGGGT 60.744 55.000 0.00 0.00 0.00 5.28
4695 6558 0.744414 ACATCCATTTCAGCGACGGG 60.744 55.000 0.00 0.00 0.00 5.28
4696 6559 1.934589 TACATCCATTTCAGCGACGG 58.065 50.000 0.00 0.00 0.00 4.79
4697 6560 3.384668 AGATACATCCATTTCAGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
4698 6561 5.773575 TCTAGATACATCCATTTCAGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
4699 6562 6.405278 TTCTAGATACATCCATTTCAGCGA 57.595 37.500 0.00 0.00 0.00 4.93
4700 6563 7.664082 AATTCTAGATACATCCATTTCAGCG 57.336 36.000 0.00 0.00 0.00 5.18
4719 6582 9.687210 TCGCACGTATAGATGTATTTTAATTCT 57.313 29.630 0.00 0.00 0.00 2.40
4720 6583 9.723299 GTCGCACGTATAGATGTATTTTAATTC 57.277 33.333 0.00 0.00 0.00 2.17
4721 6584 9.251792 TGTCGCACGTATAGATGTATTTTAATT 57.748 29.630 0.00 0.00 0.00 1.40
4722 6585 8.806177 TGTCGCACGTATAGATGTATTTTAAT 57.194 30.769 0.00 0.00 0.00 1.40
4723 6586 8.631676 TTGTCGCACGTATAGATGTATTTTAA 57.368 30.769 0.00 0.00 0.00 1.52
4724 6587 7.916977 ACTTGTCGCACGTATAGATGTATTTTA 59.083 33.333 0.00 0.00 0.00 1.52
4725 6588 6.755141 ACTTGTCGCACGTATAGATGTATTTT 59.245 34.615 0.00 0.00 0.00 1.82
4726 6589 6.270815 ACTTGTCGCACGTATAGATGTATTT 58.729 36.000 0.00 0.00 0.00 1.40
4727 6590 5.828747 ACTTGTCGCACGTATAGATGTATT 58.171 37.500 0.00 0.00 0.00 1.89
4728 6591 5.434352 ACTTGTCGCACGTATAGATGTAT 57.566 39.130 0.00 0.00 0.00 2.29
4729 6592 4.888038 ACTTGTCGCACGTATAGATGTA 57.112 40.909 0.00 0.00 0.00 2.29
4730 6593 3.777465 ACTTGTCGCACGTATAGATGT 57.223 42.857 0.00 0.00 0.00 3.06
4731 6594 6.397584 CGAATTACTTGTCGCACGTATAGATG 60.398 42.308 0.00 0.00 0.00 2.90
4732 6595 5.624081 CGAATTACTTGTCGCACGTATAGAT 59.376 40.000 0.00 0.00 0.00 1.98
4733 6596 4.965762 CGAATTACTTGTCGCACGTATAGA 59.034 41.667 0.00 0.00 0.00 1.98
4734 6597 4.145928 CCGAATTACTTGTCGCACGTATAG 59.854 45.833 0.00 0.00 35.93 1.31
4735 6598 4.037021 CCGAATTACTTGTCGCACGTATA 58.963 43.478 0.00 0.00 35.93 1.47
4736 6599 2.855963 CCGAATTACTTGTCGCACGTAT 59.144 45.455 0.00 0.00 35.93 3.06
4737 6600 2.095314 TCCGAATTACTTGTCGCACGTA 60.095 45.455 0.00 0.00 35.93 3.57
4738 6601 1.065358 CCGAATTACTTGTCGCACGT 58.935 50.000 0.00 0.00 35.93 4.49
4739 6602 1.342555 TCCGAATTACTTGTCGCACG 58.657 50.000 0.00 0.00 35.93 5.34
4740 6603 2.471749 CGTTCCGAATTACTTGTCGCAC 60.472 50.000 0.00 0.00 35.93 5.34
4741 6604 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
4742 6605 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
4743 6606 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
4744 6607 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
4745 6608 2.564062 TCCTCCGTTCCGAATTACTTGT 59.436 45.455 0.00 0.00 0.00 3.16
4746 6609 3.241067 TCCTCCGTTCCGAATTACTTG 57.759 47.619 0.00 0.00 0.00 3.16
4747 6610 3.260128 ACTTCCTCCGTTCCGAATTACTT 59.740 43.478 0.00 0.00 0.00 2.24
4748 6611 2.830321 ACTTCCTCCGTTCCGAATTACT 59.170 45.455 0.00 0.00 0.00 2.24
4749 6612 3.242549 ACTTCCTCCGTTCCGAATTAC 57.757 47.619 0.00 0.00 0.00 1.89
4750 6613 4.272489 TCTACTTCCTCCGTTCCGAATTA 58.728 43.478 0.00 0.00 0.00 1.40
4751 6614 3.094572 TCTACTTCCTCCGTTCCGAATT 58.905 45.455 0.00 0.00 0.00 2.17
4752 6615 2.731572 TCTACTTCCTCCGTTCCGAAT 58.268 47.619 0.00 0.00 0.00 3.34
4753 6616 2.205022 TCTACTTCCTCCGTTCCGAA 57.795 50.000 0.00 0.00 0.00 4.30
4754 6617 2.022195 CATCTACTTCCTCCGTTCCGA 58.978 52.381 0.00 0.00 0.00 4.55
4755 6618 1.067212 CCATCTACTTCCTCCGTTCCG 59.933 57.143 0.00 0.00 0.00 4.30
4756 6619 1.202545 GCCATCTACTTCCTCCGTTCC 60.203 57.143 0.00 0.00 0.00 3.62
4757 6620 1.480954 TGCCATCTACTTCCTCCGTTC 59.519 52.381 0.00 0.00 0.00 3.95
4758 6621 1.568504 TGCCATCTACTTCCTCCGTT 58.431 50.000 0.00 0.00 0.00 4.44
4759 6622 1.482593 CTTGCCATCTACTTCCTCCGT 59.517 52.381 0.00 0.00 0.00 4.69
4760 6623 1.808133 GCTTGCCATCTACTTCCTCCG 60.808 57.143 0.00 0.00 0.00 4.63
4761 6624 1.808133 CGCTTGCCATCTACTTCCTCC 60.808 57.143 0.00 0.00 0.00 4.30
4762 6625 1.576356 CGCTTGCCATCTACTTCCTC 58.424 55.000 0.00 0.00 0.00 3.71
4763 6626 0.462759 GCGCTTGCCATCTACTTCCT 60.463 55.000 0.00 0.00 0.00 3.36
4764 6627 0.462759 AGCGCTTGCCATCTACTTCC 60.463 55.000 2.64 0.00 40.41 3.46
4765 6628 0.933796 GAGCGCTTGCCATCTACTTC 59.066 55.000 13.26 0.00 40.41 3.01
4766 6629 0.250234 TGAGCGCTTGCCATCTACTT 59.750 50.000 13.26 0.00 40.41 2.24
4767 6630 0.250234 TTGAGCGCTTGCCATCTACT 59.750 50.000 13.26 0.00 40.41 2.57
4768 6631 0.375106 GTTGAGCGCTTGCCATCTAC 59.625 55.000 13.26 0.56 40.41 2.59
4769 6632 1.083806 CGTTGAGCGCTTGCCATCTA 61.084 55.000 13.26 0.00 40.41 1.98
4770 6633 2.393768 CGTTGAGCGCTTGCCATCT 61.394 57.895 13.26 0.00 40.41 2.90
4791 6654 2.035626 CCAACCAGGATGCCGGTT 59.964 61.111 1.90 0.00 39.56 4.44
4793 6656 2.035626 AACCAACCAGGATGCCGG 59.964 61.111 0.00 0.00 41.22 6.13
4795 6658 1.106285 GATGAACCAACCAGGATGCC 58.894 55.000 0.00 0.00 41.22 4.40
4796 6659 0.734889 CGATGAACCAACCAGGATGC 59.265 55.000 0.00 0.00 41.22 3.91
4797 6660 1.739466 CACGATGAACCAACCAGGATG 59.261 52.381 0.00 0.00 41.22 3.51
4798 6661 1.340017 CCACGATGAACCAACCAGGAT 60.340 52.381 0.00 0.00 41.22 3.24
4799 6662 0.036164 CCACGATGAACCAACCAGGA 59.964 55.000 0.00 0.00 41.22 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.