Multiple sequence alignment - TraesCS4B01G047000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G047000 chr4B 100.000 5478 0 0 1 5478 34050499 34055976 0.000000e+00 10117.0
1 TraesCS4B01G047000 chr4D 92.849 5034 221 51 526 5478 22034157 22039132 0.000000e+00 7173.0
2 TraesCS4B01G047000 chr4D 91.919 99 5 3 428 524 22033705 22033802 9.570000e-28 135.0
3 TraesCS4B01G047000 chr4A 94.376 3627 151 10 1546 5150 579850955 579847360 0.000000e+00 5518.0
4 TraesCS4B01G047000 chr4A 85.406 1158 81 39 428 1516 579852091 579850953 0.000000e+00 1122.0
5 TraesCS4B01G047000 chr4A 93.373 166 11 0 5150 5315 579847277 579847112 4.240000e-61 246.0
6 TraesCS4B01G047000 chr4A 96.667 90 3 0 5389 5478 579847113 579847024 3.420000e-32 150.0
7 TraesCS4B01G047000 chr5D 76.216 1110 229 26 3330 4420 355204086 355205179 6.200000e-154 555.0
8 TraesCS4B01G047000 chr5D 95.208 313 14 1 3 315 72489574 72489263 1.370000e-135 494.0
9 TraesCS4B01G047000 chr5D 94.569 313 17 0 3 315 409292563 409292251 8.250000e-133 484.0
10 TraesCS4B01G047000 chr5A 76.036 1110 231 26 3330 4420 457436268 457437361 1.340000e-150 544.0
11 TraesCS4B01G047000 chr5A 79.845 129 8 7 316 427 606020397 606020270 1.640000e-10 78.7
12 TraesCS4B01G047000 chr7B 97.460 315 7 1 1 315 153596779 153596466 2.250000e-148 536.0
13 TraesCS4B01G047000 chr5B 75.924 1109 228 25 3330 4420 419998889 419999976 2.900000e-147 532.0
14 TraesCS4B01G047000 chrUn 95.527 313 14 0 2 314 112621930 112622242 8.190000e-138 501.0
15 TraesCS4B01G047000 chr6B 81.373 510 37 24 752 1225 542942477 542942964 4.030000e-96 363.0
16 TraesCS4B01G047000 chr6A 77.729 687 78 44 584 1228 265784696 265784043 8.730000e-93 351.0
17 TraesCS4B01G047000 chr7A 94.904 157 8 0 2 158 118312526 118312370 4.240000e-61 246.0
18 TraesCS4B01G047000 chr7A 92.994 157 10 1 2 158 118315808 118315653 1.540000e-55 228.0
19 TraesCS4B01G047000 chr3A 92.361 144 11 0 2 145 441138379 441138522 7.190000e-49 206.0
20 TraesCS4B01G047000 chr3D 80.451 266 30 5 2 264 327459386 327459632 3.370000e-42 183.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G047000 chr4B 34050499 34055976 5477 False 10117 10117 100.0000 1 5478 1 chr4B.!!$F1 5477
1 TraesCS4B01G047000 chr4D 22033705 22039132 5427 False 3654 7173 92.3840 428 5478 2 chr4D.!!$F1 5050
2 TraesCS4B01G047000 chr4A 579847024 579852091 5067 True 1759 5518 92.4555 428 5478 4 chr4A.!!$R1 5050
3 TraesCS4B01G047000 chr5D 355204086 355205179 1093 False 555 555 76.2160 3330 4420 1 chr5D.!!$F1 1090
4 TraesCS4B01G047000 chr5A 457436268 457437361 1093 False 544 544 76.0360 3330 4420 1 chr5A.!!$F1 1090
5 TraesCS4B01G047000 chr5B 419998889 419999976 1087 False 532 532 75.9240 3330 4420 1 chr5B.!!$F1 1090
6 TraesCS4B01G047000 chr6A 265784043 265784696 653 True 351 351 77.7290 584 1228 1 chr6A.!!$R1 644
7 TraesCS4B01G047000 chr7A 118312370 118315808 3438 True 237 246 93.9490 2 158 2 chr7A.!!$R1 156

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
311 3594 0.106918 TGCACCGAGTGGAAAGGTTT 60.107 50.000 6.23 0.00 39.21 3.27 F
1721 5462 0.030908 GTCTCGTCTTATCCAGCCCG 59.969 60.000 0.00 0.00 0.00 6.13 F
2365 6113 0.041535 TTGATGCTGGCCAAAGGGAT 59.958 50.000 7.01 1.06 35.59 3.85 F
2369 6117 1.454663 GCTGGCCAAAGGGATCCTC 60.455 63.158 12.58 1.55 35.59 3.71 F
2950 6713 1.677576 TGCTGTTCTTTTGTGCAGGAG 59.322 47.619 0.00 0.00 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1880 5625 0.533755 CCATCCCATCAGCGTCCTTC 60.534 60.000 0.00 0.0 0.00 3.46 R
3135 6898 1.064017 AGACCTGGCCAAGTTTGAACA 60.064 47.619 8.78 0.0 0.00 3.18 R
3852 7618 0.036010 AGCTTGAGTTGGTGGATCGG 60.036 55.000 0.00 0.0 0.00 4.18 R
3882 7648 1.233285 CCTGCACTCTTCCAGCACAC 61.233 60.000 0.00 0.0 34.13 3.82 R
4876 8642 1.072806 TCTGCAGCACATGAGTCCTTT 59.927 47.619 9.47 0.0 0.00 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 3332 3.503363 GCTCCAGCGCATCACCAC 61.503 66.667 11.47 0.00 0.00 4.16
68 3351 2.586792 GCTCCGCACTTCCTGGAT 59.413 61.111 0.00 0.00 0.00 3.41
75 3358 0.962356 GCACTTCCTGGATGTGGTGG 60.962 60.000 31.77 15.62 37.91 4.61
90 3373 2.032924 GTGGTGGTGGAGAAAAGAAACG 59.967 50.000 0.00 0.00 0.00 3.60
91 3374 2.092861 TGGTGGTGGAGAAAAGAAACGA 60.093 45.455 0.00 0.00 0.00 3.85
93 3376 3.003378 GGTGGTGGAGAAAAGAAACGAAG 59.997 47.826 0.00 0.00 0.00 3.79
158 3441 3.244249 GGGATGGGAACGAGAAGATAAGG 60.244 52.174 0.00 0.00 0.00 2.69
159 3442 3.388350 GGATGGGAACGAGAAGATAAGGT 59.612 47.826 0.00 0.00 0.00 3.50
160 3443 4.501743 GGATGGGAACGAGAAGATAAGGTC 60.502 50.000 0.00 0.00 0.00 3.85
161 3444 3.437213 TGGGAACGAGAAGATAAGGTCA 58.563 45.455 0.00 0.00 0.00 4.02
162 3445 3.194968 TGGGAACGAGAAGATAAGGTCAC 59.805 47.826 0.00 0.00 0.00 3.67
163 3446 3.447944 GGGAACGAGAAGATAAGGTCACT 59.552 47.826 0.00 0.00 0.00 3.41
164 3447 4.425520 GGAACGAGAAGATAAGGTCACTG 58.574 47.826 0.00 0.00 0.00 3.66
165 3448 3.512033 ACGAGAAGATAAGGTCACTGC 57.488 47.619 0.00 0.00 0.00 4.40
166 3449 2.166664 ACGAGAAGATAAGGTCACTGCC 59.833 50.000 0.00 0.00 0.00 4.85
167 3450 2.796383 CGAGAAGATAAGGTCACTGCCG 60.796 54.545 0.00 0.00 0.00 5.69
168 3451 1.134670 AGAAGATAAGGTCACTGCCGC 60.135 52.381 0.00 0.00 0.00 6.53
169 3452 0.905357 AAGATAAGGTCACTGCCGCT 59.095 50.000 0.00 0.00 0.00 5.52
170 3453 0.905357 AGATAAGGTCACTGCCGCTT 59.095 50.000 0.00 0.00 0.00 4.68
171 3454 1.279271 AGATAAGGTCACTGCCGCTTT 59.721 47.619 0.00 0.00 0.00 3.51
172 3455 2.084546 GATAAGGTCACTGCCGCTTTT 58.915 47.619 0.00 0.00 0.00 2.27
173 3456 1.519408 TAAGGTCACTGCCGCTTTTC 58.481 50.000 0.00 0.00 0.00 2.29
174 3457 0.179018 AAGGTCACTGCCGCTTTTCT 60.179 50.000 0.00 0.00 0.00 2.52
175 3458 0.179018 AGGTCACTGCCGCTTTTCTT 60.179 50.000 0.00 0.00 0.00 2.52
176 3459 1.071699 AGGTCACTGCCGCTTTTCTTA 59.928 47.619 0.00 0.00 0.00 2.10
177 3460 2.084546 GGTCACTGCCGCTTTTCTTAT 58.915 47.619 0.00 0.00 0.00 1.73
178 3461 2.159517 GGTCACTGCCGCTTTTCTTATG 60.160 50.000 0.00 0.00 0.00 1.90
179 3462 2.083774 TCACTGCCGCTTTTCTTATGG 58.916 47.619 0.00 0.00 0.00 2.74
180 3463 1.133025 CACTGCCGCTTTTCTTATGGG 59.867 52.381 0.00 0.00 0.00 4.00
181 3464 0.740737 CTGCCGCTTTTCTTATGGGG 59.259 55.000 0.00 0.00 37.15 4.96
183 3466 2.115510 CCGCTTTTCTTATGGGGCC 58.884 57.895 0.00 0.00 0.00 5.80
184 3467 1.391933 CCGCTTTTCTTATGGGGCCC 61.392 60.000 18.17 18.17 0.00 5.80
185 3468 1.724582 CGCTTTTCTTATGGGGCCCG 61.725 60.000 19.83 2.95 0.00 6.13
186 3469 2.016393 GCTTTTCTTATGGGGCCCGC 62.016 60.000 19.83 9.75 0.00 6.13
187 3470 0.682855 CTTTTCTTATGGGGCCCGCA 60.683 55.000 19.83 15.87 0.00 5.69
188 3471 0.968393 TTTTCTTATGGGGCCCGCAC 60.968 55.000 19.83 1.80 0.00 5.34
189 3472 3.690685 TTCTTATGGGGCCCGCACG 62.691 63.158 19.83 5.69 0.00 5.34
190 3473 4.169696 CTTATGGGGCCCGCACGA 62.170 66.667 19.83 0.00 0.00 4.35
191 3474 4.169696 TTATGGGGCCCGCACGAG 62.170 66.667 19.83 0.00 0.00 4.18
199 3482 4.657824 CCCGCACGAGGACACGTT 62.658 66.667 0.00 0.00 44.76 3.99
200 3483 2.660552 CCGCACGAGGACACGTTT 60.661 61.111 0.00 0.00 44.76 3.60
201 3484 1.372004 CCGCACGAGGACACGTTTA 60.372 57.895 0.00 0.00 44.76 2.01
202 3485 0.940519 CCGCACGAGGACACGTTTAA 60.941 55.000 0.00 0.00 44.76 1.52
203 3486 0.160182 CGCACGAGGACACGTTTAAC 59.840 55.000 0.00 0.00 44.76 2.01
238 3521 2.027605 CGTGTCGCACTGGTCAGT 59.972 61.111 0.00 0.00 43.61 3.41
239 3522 1.591594 CGTGTCGCACTGGTCAGTT 60.592 57.895 0.20 0.00 40.20 3.16
240 3523 1.548973 CGTGTCGCACTGGTCAGTTC 61.549 60.000 0.20 0.00 40.20 3.01
241 3524 1.299850 TGTCGCACTGGTCAGTTCG 60.300 57.895 14.95 14.95 46.58 3.95
245 3528 3.514777 GCACTGGTCAGTTCGATCA 57.485 52.632 0.20 0.00 40.20 2.92
246 3529 1.795768 GCACTGGTCAGTTCGATCAA 58.204 50.000 0.20 0.00 40.20 2.57
247 3530 2.143122 GCACTGGTCAGTTCGATCAAA 58.857 47.619 0.20 0.00 40.20 2.69
248 3531 2.744202 GCACTGGTCAGTTCGATCAAAT 59.256 45.455 0.20 0.00 40.20 2.32
249 3532 3.181516 GCACTGGTCAGTTCGATCAAATC 60.182 47.826 0.20 0.00 40.20 2.17
250 3533 3.996363 CACTGGTCAGTTCGATCAAATCA 59.004 43.478 0.20 0.00 40.20 2.57
251 3534 4.092529 CACTGGTCAGTTCGATCAAATCAG 59.907 45.833 0.20 6.78 40.20 2.90
252 3535 4.021104 ACTGGTCAGTTCGATCAAATCAGA 60.021 41.667 12.63 0.00 38.83 3.27
253 3536 5.089970 TGGTCAGTTCGATCAAATCAGAT 57.910 39.130 0.00 0.00 29.35 2.90
254 3537 5.111989 TGGTCAGTTCGATCAAATCAGATC 58.888 41.667 0.00 0.00 40.76 2.75
255 3538 4.509600 GGTCAGTTCGATCAAATCAGATCC 59.490 45.833 0.00 0.00 41.03 3.36
256 3539 5.111989 GTCAGTTCGATCAAATCAGATCCA 58.888 41.667 0.00 0.00 41.03 3.41
257 3540 5.582269 GTCAGTTCGATCAAATCAGATCCAA 59.418 40.000 0.00 0.00 41.03 3.53
258 3541 5.582269 TCAGTTCGATCAAATCAGATCCAAC 59.418 40.000 6.39 6.39 42.64 3.77
259 3542 4.568359 AGTTCGATCAAATCAGATCCAACG 59.432 41.667 8.17 0.00 45.10 4.10
260 3543 4.385358 TCGATCAAATCAGATCCAACGA 57.615 40.909 0.00 0.00 41.03 3.85
261 3544 4.112634 TCGATCAAATCAGATCCAACGAC 58.887 43.478 0.00 0.00 41.03 4.34
262 3545 3.060940 CGATCAAATCAGATCCAACGACG 60.061 47.826 0.00 0.00 41.03 5.12
263 3546 1.999735 TCAAATCAGATCCAACGACGC 59.000 47.619 0.00 0.00 0.00 5.19
264 3547 1.731709 CAAATCAGATCCAACGACGCA 59.268 47.619 0.00 0.00 0.00 5.24
265 3548 1.359848 AATCAGATCCAACGACGCAC 58.640 50.000 0.00 0.00 0.00 5.34
307 3590 3.655481 GGTGCACCGAGTGGAAAG 58.345 61.111 22.49 0.00 35.32 2.62
308 3591 1.966451 GGTGCACCGAGTGGAAAGG 60.966 63.158 22.49 0.00 35.32 3.11
309 3592 1.227853 GTGCACCGAGTGGAAAGGT 60.228 57.895 5.22 0.00 35.32 3.50
310 3593 0.818040 GTGCACCGAGTGGAAAGGTT 60.818 55.000 5.22 0.00 35.32 3.50
311 3594 0.106918 TGCACCGAGTGGAAAGGTTT 60.107 50.000 6.23 0.00 39.21 3.27
312 3595 0.591659 GCACCGAGTGGAAAGGTTTC 59.408 55.000 6.23 0.00 39.21 2.78
330 3613 1.807814 TCCCATAAGGAAGAGGGAGC 58.192 55.000 0.00 0.00 45.15 4.70
331 3614 1.009552 TCCCATAAGGAAGAGGGAGCA 59.990 52.381 0.00 0.00 45.15 4.26
332 3615 2.061061 CCCATAAGGAAGAGGGAGCAT 58.939 52.381 0.00 0.00 44.30 3.79
333 3616 2.224719 CCCATAAGGAAGAGGGAGCATG 60.225 54.545 0.00 0.00 44.30 4.06
334 3617 2.441001 CCATAAGGAAGAGGGAGCATGT 59.559 50.000 0.00 0.00 36.89 3.21
335 3618 3.474600 CATAAGGAAGAGGGAGCATGTG 58.525 50.000 0.00 0.00 0.00 3.21
336 3619 0.622665 AAGGAAGAGGGAGCATGTGG 59.377 55.000 0.00 0.00 0.00 4.17
337 3620 1.225704 GGAAGAGGGAGCATGTGGG 59.774 63.158 0.00 0.00 0.00 4.61
338 3621 1.225704 GAAGAGGGAGCATGTGGGG 59.774 63.158 0.00 0.00 0.00 4.96
339 3622 2.900671 GAAGAGGGAGCATGTGGGGC 62.901 65.000 0.00 0.00 0.00 5.80
340 3623 4.512914 GAGGGAGCATGTGGGGCC 62.513 72.222 0.00 0.00 0.00 5.80
343 3626 4.864334 GGAGCATGTGGGGCCGAG 62.864 72.222 0.00 0.00 0.00 4.63
344 3627 3.785859 GAGCATGTGGGGCCGAGA 61.786 66.667 0.00 0.00 0.00 4.04
345 3628 3.746949 GAGCATGTGGGGCCGAGAG 62.747 68.421 0.00 0.00 0.00 3.20
365 3648 3.133464 CACGTGGGCCGCATGATT 61.133 61.111 18.64 0.00 41.42 2.57
366 3649 3.133464 ACGTGGGCCGCATGATTG 61.133 61.111 18.64 1.58 41.42 2.67
367 3650 4.557605 CGTGGGCCGCATGATTGC 62.558 66.667 18.64 0.00 45.78 3.56
377 3660 2.744787 GCATGATTGCTTTCGATCGT 57.255 45.000 15.94 0.00 45.77 3.73
378 3661 3.859745 GCATGATTGCTTTCGATCGTA 57.140 42.857 15.94 1.77 45.77 3.43
379 3662 3.535860 GCATGATTGCTTTCGATCGTAC 58.464 45.455 15.94 3.87 45.77 3.67
380 3663 3.776742 CATGATTGCTTTCGATCGTACG 58.223 45.455 15.94 9.53 36.15 3.67
381 3664 2.871133 TGATTGCTTTCGATCGTACGT 58.129 42.857 15.94 2.33 36.15 3.57
382 3665 2.596862 TGATTGCTTTCGATCGTACGTG 59.403 45.455 15.94 6.86 36.15 4.49
383 3666 2.334971 TTGCTTTCGATCGTACGTGA 57.665 45.000 15.94 9.19 34.70 4.35
384 3667 1.609932 TGCTTTCGATCGTACGTGAC 58.390 50.000 15.94 7.05 34.70 3.67
385 3668 0.912528 GCTTTCGATCGTACGTGACC 59.087 55.000 15.94 2.34 34.70 4.02
386 3669 1.177668 CTTTCGATCGTACGTGACCG 58.822 55.000 15.94 13.75 40.83 4.79
387 3670 0.179192 TTTCGATCGTACGTGACCGG 60.179 55.000 15.94 0.00 38.78 5.28
388 3671 2.582202 TTCGATCGTACGTGACCGGC 62.582 60.000 15.94 0.00 38.78 6.13
389 3672 2.278401 GATCGTACGTGACCGGCC 60.278 66.667 16.05 0.00 38.78 6.13
390 3673 4.183686 ATCGTACGTGACCGGCCG 62.184 66.667 21.04 21.04 38.78 6.13
392 3675 4.403137 CGTACGTGACCGGCCGAA 62.403 66.667 30.73 9.20 38.78 4.30
393 3676 2.806621 GTACGTGACCGGCCGAAC 60.807 66.667 30.73 20.36 38.78 3.95
394 3677 4.403137 TACGTGACCGGCCGAACG 62.403 66.667 32.19 32.19 41.64 3.95
397 3680 3.408851 GTGACCGGCCGAACGTTC 61.409 66.667 30.73 18.47 0.00 3.95
398 3681 4.668118 TGACCGGCCGAACGTTCC 62.668 66.667 30.73 8.54 0.00 3.62
423 3706 3.030652 CGCAGCAGGGAAACGTTT 58.969 55.556 14.57 14.57 0.00 3.60
424 3707 1.082104 CGCAGCAGGGAAACGTTTC 60.082 57.895 28.83 28.83 36.46 2.78
487 3770 1.073923 CCAGTTCAGTTAAGGCCCAGT 59.926 52.381 0.00 0.00 0.00 4.00
490 3773 4.567747 CCAGTTCAGTTAAGGCCCAGTTAT 60.568 45.833 0.00 0.00 0.00 1.89
590 4228 1.700368 CCTCCTCTCCACCTCCTCA 59.300 63.158 0.00 0.00 0.00 3.86
661 4299 4.208686 GGCGAGGAGGCGATCGTT 62.209 66.667 17.81 5.41 40.97 3.85
673 4311 1.819632 GATCGTTGCCCGCATTCCT 60.820 57.895 0.00 0.00 36.19 3.36
675 4313 2.535485 ATCGTTGCCCGCATTCCTCA 62.535 55.000 0.00 0.00 36.19 3.86
797 4465 1.346197 CATCATCGCACGTGAGCAC 59.654 57.895 22.23 0.00 0.00 4.40
975 4685 3.056328 GACTTGGCCGGGTGCTTC 61.056 66.667 2.18 0.00 40.92 3.86
1020 4730 2.349755 GCGGTGGTAAAGCCCTCA 59.650 61.111 0.00 0.00 36.04 3.86
1033 4743 0.188342 GCCCTCATCTCCTCTCCTCT 59.812 60.000 0.00 0.00 0.00 3.69
1034 4744 1.823250 GCCCTCATCTCCTCTCCTCTC 60.823 61.905 0.00 0.00 0.00 3.20
1035 4745 1.203050 CCCTCATCTCCTCTCCTCTCC 60.203 61.905 0.00 0.00 0.00 3.71
1038 4748 1.419762 TCATCTCCTCTCCTCTCCTCG 59.580 57.143 0.00 0.00 0.00 4.63
1039 4749 1.419762 CATCTCCTCTCCTCTCCTCGA 59.580 57.143 0.00 0.00 0.00 4.04
1041 4751 2.131854 TCTCCTCTCCTCTCCTCGATT 58.868 52.381 0.00 0.00 0.00 3.34
1042 4752 2.105821 TCTCCTCTCCTCTCCTCGATTC 59.894 54.545 0.00 0.00 0.00 2.52
1087 4819 3.690628 AGAAGAGACCGAGTACACTTAGC 59.309 47.826 0.00 0.00 0.00 3.09
1108 4844 4.651045 AGCTGGTTTCCTTTTCTTCATGTT 59.349 37.500 0.00 0.00 0.00 2.71
1128 4866 3.615224 TGTTAGATCAGATGTGCTGCA 57.385 42.857 0.00 0.00 44.52 4.41
1225 4964 4.619973 TGCAAAATGTGATCTTGGACAAC 58.380 39.130 0.00 0.00 0.00 3.32
1244 4983 2.950433 ACGGCAGCAAATTCATTCTTG 58.050 42.857 0.00 0.00 0.00 3.02
1259 4998 1.140161 CTTGAATGCGGCCACATGG 59.860 57.895 7.10 0.00 38.53 3.66
1280 5019 2.893637 CGAGGTTTCCATGTCTAGTGG 58.106 52.381 0.00 0.00 38.11 4.00
1284 5023 2.084546 GTTTCCATGTCTAGTGGTGGC 58.915 52.381 0.00 0.00 37.96 5.01
1317 5057 4.155280 GCAGTCTTTAATTTGGAACCGCTA 59.845 41.667 0.00 0.00 0.00 4.26
1322 5062 6.093633 GTCTTTAATTTGGAACCGCTAGTGAT 59.906 38.462 4.44 0.00 0.00 3.06
1326 5066 3.627395 TTGGAACCGCTAGTGATGATT 57.373 42.857 4.44 0.00 0.00 2.57
1388 5128 2.489971 GTTTTGACATCTGTGGGACGA 58.510 47.619 0.00 0.00 0.00 4.20
1397 5137 1.614903 TCTGTGGGACGACGTAAATGT 59.385 47.619 0.00 0.00 0.00 2.71
1410 5150 2.669434 CGTAAATGTTCGGTTGGATCGT 59.331 45.455 0.00 0.00 0.00 3.73
1419 5159 1.129811 CGGTTGGATCGTAAAAGGTGC 59.870 52.381 0.00 0.00 0.00 5.01
1467 5208 9.525409 GCGTTCTAGACCTTATACTAATTGAAA 57.475 33.333 0.00 0.00 0.00 2.69
1480 5221 4.697352 ACTAATTGAAAGTGGCTGTGCTAG 59.303 41.667 0.00 0.00 0.00 3.42
1489 5230 2.224314 GTGGCTGTGCTAGTTTCTTGTC 59.776 50.000 0.00 0.00 0.00 3.18
1524 5265 1.059692 CGATGTCGCATGTCTGTTGTC 59.940 52.381 0.00 0.00 0.00 3.18
1526 5267 0.943835 TGTCGCATGTCTGTTGTCGG 60.944 55.000 0.00 0.00 0.00 4.79
1531 5272 1.229428 CATGTCTGTTGTCGGCTTGT 58.771 50.000 0.00 0.00 0.00 3.16
1537 5278 2.664851 TTGTCGGCTTGTGGCTCG 60.665 61.111 0.00 0.00 41.46 5.03
1544 5285 2.186826 GCTTGTGGCTCGGTGTGTT 61.187 57.895 0.00 0.00 38.06 3.32
1552 5293 0.676782 GCTCGGTGTGTTATGCCCTT 60.677 55.000 0.00 0.00 0.00 3.95
1597 5338 1.335496 GGTGGTTTGCTTTCGCTGTTA 59.665 47.619 0.00 0.00 36.97 2.41
1618 5359 1.732941 TCTGTGCGTTTGAGTTGTGT 58.267 45.000 0.00 0.00 0.00 3.72
1657 5398 2.386661 AGTGGACTTGGTTAGCGATG 57.613 50.000 0.00 0.00 0.00 3.84
1664 5405 4.122776 GACTTGGTTAGCGATGATGATGT 58.877 43.478 0.00 0.00 0.00 3.06
1677 5418 4.944962 TGATGATGTGTTCGAATTGGAC 57.055 40.909 0.00 0.00 0.00 4.02
1682 5423 1.076332 GTGTTCGAATTGGACGAGGG 58.924 55.000 0.00 0.00 40.72 4.30
1721 5462 0.030908 GTCTCGTCTTATCCAGCCCG 59.969 60.000 0.00 0.00 0.00 6.13
1837 5582 7.541091 AGTCATTGCTCGTATACGGTTATTATG 59.459 37.037 24.18 18.04 40.29 1.90
1880 5625 8.763049 TTAGTCTGATGTTTGTTACTGATCTG 57.237 34.615 0.00 0.00 0.00 2.90
1904 5649 2.484062 CGCTGATGGGATGGCCAAC 61.484 63.158 10.96 7.12 35.15 3.77
1980 5725 4.526970 GAAAGAGATGGTATTGAAGGCCA 58.473 43.478 5.01 0.00 36.64 5.36
2088 5836 3.517500 ACCTTTTGTTTTGCTTTCAGGGA 59.482 39.130 0.00 0.00 0.00 4.20
2225 5973 2.821378 TGGTCATGTGAAATGCAGGAAG 59.179 45.455 0.00 0.00 0.00 3.46
2287 6035 1.679944 CCCCAGCGTGTTGAAGATGAT 60.680 52.381 0.00 0.00 0.00 2.45
2290 6038 2.941064 CCAGCGTGTTGAAGATGATGAT 59.059 45.455 1.06 0.00 0.00 2.45
2293 6041 4.272748 CAGCGTGTTGAAGATGATGATGAT 59.727 41.667 0.00 0.00 0.00 2.45
2296 6044 5.049612 GCGTGTTGAAGATGATGATGATGAT 60.050 40.000 0.00 0.00 0.00 2.45
2299 6047 7.095187 CGTGTTGAAGATGATGATGATGATGAT 60.095 37.037 0.00 0.00 0.00 2.45
2316 6064 8.429641 TGATGATGATGAAGAAGAAGATGATGA 58.570 33.333 0.00 0.00 0.00 2.92
2343 6091 5.818887 TGATTTTGAAGACTGGGATGATGA 58.181 37.500 0.00 0.00 0.00 2.92
2365 6113 0.041535 TTGATGCTGGCCAAAGGGAT 59.958 50.000 7.01 1.06 35.59 3.85
2369 6117 1.454663 GCTGGCCAAAGGGATCCTC 60.455 63.158 12.58 1.55 35.59 3.71
2396 6144 3.197766 TGATGGTTCTGGTGATGAGGTAC 59.802 47.826 0.00 0.00 0.00 3.34
2607 6370 9.976511 AGCATTAATCACTTTCATGATTTATGG 57.023 29.630 20.39 9.28 46.47 2.74
2662 6425 2.669434 CTGCAAACACATTTATGGCTGC 59.331 45.455 0.00 0.00 0.00 5.25
2687 6450 2.028020 AGGTAGCTGTGTCAAGTAAGCC 60.028 50.000 0.00 0.00 36.28 4.35
2894 6657 4.159557 ACTTAGTTGGCATCAAAATGGGT 58.840 39.130 0.00 0.00 34.28 4.51
2936 6699 5.450550 GCTTTCTAACCTCTGTTTTGCTGTT 60.451 40.000 0.00 0.00 35.87 3.16
2949 6712 1.761449 TGCTGTTCTTTTGTGCAGGA 58.239 45.000 0.00 0.00 0.00 3.86
2950 6713 1.677576 TGCTGTTCTTTTGTGCAGGAG 59.322 47.619 0.00 0.00 0.00 3.69
2957 6720 3.740115 TCTTTTGTGCAGGAGTTCCTAC 58.260 45.455 0.00 0.00 46.65 3.18
2962 6725 2.300152 TGTGCAGGAGTTCCTACAAGAG 59.700 50.000 2.67 0.00 46.65 2.85
2973 6736 5.305644 AGTTCCTACAAGAGATGTCACAGTT 59.694 40.000 0.00 0.00 42.70 3.16
2983 6746 2.121291 TGTCACAGTTGGACAAGCAA 57.879 45.000 0.00 0.00 41.96 3.91
3030 6793 5.443185 TTTCCTGAAGATGAAGCAAACAG 57.557 39.130 0.00 0.00 0.00 3.16
3031 6794 4.356405 TCCTGAAGATGAAGCAAACAGA 57.644 40.909 0.00 0.00 0.00 3.41
3059 6822 2.703007 AGAAGATGTGGTATGGCTCTCC 59.297 50.000 0.00 0.00 0.00 3.71
3061 6824 2.769209 AGATGTGGTATGGCTCTCCTT 58.231 47.619 0.00 0.00 0.00 3.36
3079 6842 4.274147 TCCTTTTGTAGTTGTTGGCTTGA 58.726 39.130 0.00 0.00 0.00 3.02
3135 6898 9.309224 GGGATGGTACCTTATGCTTTATATTTT 57.691 33.333 14.36 0.00 0.00 1.82
3175 6938 3.838317 TCTGGATACCCCTATGCATGTAC 59.162 47.826 10.16 0.00 30.91 2.90
3183 6946 3.181440 CCCCTATGCATGTACTGGTTGAT 60.181 47.826 10.16 0.00 0.00 2.57
3186 6949 5.371526 CCTATGCATGTACTGGTTGATTCT 58.628 41.667 10.16 0.00 0.00 2.40
3202 6965 6.128336 GGTTGATTCTATCTATGCATCACAGC 60.128 42.308 0.19 0.00 0.00 4.40
3209 6972 4.324471 TGCATCACAGCATGACCC 57.676 55.556 0.00 0.00 41.24 4.46
3258 7021 8.909708 ACATGTGAATAATAATGGTTTCGTTG 57.090 30.769 0.00 0.00 0.00 4.10
3271 7034 4.912766 TGGTTTCGTTGTTAATTTCGATGC 59.087 37.500 0.00 0.00 32.54 3.91
3287 7050 3.374988 TCGATGCATTGACACTGGAATTC 59.625 43.478 12.88 0.00 0.00 2.17
3325 7088 2.300152 TGAGAATCGCTTCAGTTCCTGT 59.700 45.455 1.35 0.00 38.61 4.00
3346 7109 1.889170 GTGGGGAGAAAGAAAGCAAGG 59.111 52.381 0.00 0.00 0.00 3.61
3538 7304 8.584157 CATAGTATGAGAGCACCTTTCTTCTAT 58.416 37.037 3.91 0.00 0.00 1.98
3591 7357 3.429960 GCCTGGGCAGAAATTTCAAGATC 60.430 47.826 19.99 6.34 41.49 2.75
3796 7562 2.229784 GCAGCTCAATTGCCTACAAACT 59.770 45.455 0.00 0.00 39.77 2.66
3881 7647 3.378427 ACCAACTCAAGCTGTTCAGAAAC 59.622 43.478 3.84 0.00 35.85 2.78
3882 7648 3.546815 CCAACTCAAGCTGTTCAGAAACG 60.547 47.826 3.84 0.00 38.28 3.60
3922 7688 5.300286 CAGGAAGTGGAATTTGGTATGGATC 59.700 44.000 0.00 0.00 0.00 3.36
3951 7717 4.870123 ACAAAGTTGCTGCATTGGATTA 57.130 36.364 16.24 0.00 0.00 1.75
4003 7769 2.452937 GGACCATACCAGGGGAGCC 61.453 68.421 0.00 0.00 0.00 4.70
4252 8018 1.761784 GATCAGACTCAGGATGGCACT 59.238 52.381 0.00 0.00 36.16 4.40
4285 8051 1.344458 GTGATGTGCAGTCTCTCACG 58.656 55.000 0.00 0.00 36.06 4.35
4582 8348 7.797123 GTGAAAGTTTATTTTGTAGACAGACCG 59.203 37.037 0.00 0.00 0.00 4.79
4589 8355 6.980051 ATTTTGTAGACAGACCGGATAAAC 57.020 37.500 9.46 0.00 0.00 2.01
4657 8423 3.573967 GCCTTCATTTGGGAGAAGTTCAA 59.426 43.478 5.50 0.00 39.61 2.69
4718 8484 9.638239 TTGTGAATACTGAATTTATTGCTTTCC 57.362 29.630 0.00 0.00 0.00 3.13
4724 8490 7.156876 ACTGAATTTATTGCTTTCCGATTCA 57.843 32.000 0.00 0.00 32.85 2.57
4729 8495 7.760131 ATTTATTGCTTTCCGATTCATTGTG 57.240 32.000 0.00 0.00 0.00 3.33
4876 8642 3.961408 GGTACATCTCAGAGCTTTAGGGA 59.039 47.826 0.00 0.00 0.00 4.20
4896 8662 0.689055 AAGGACTCATGTGCTGCAGA 59.311 50.000 20.43 0.69 44.18 4.26
4897 8663 0.910338 AGGACTCATGTGCTGCAGAT 59.090 50.000 20.43 6.44 43.30 2.90
4898 8664 2.113807 AGGACTCATGTGCTGCAGATA 58.886 47.619 20.43 1.74 43.30 1.98
4899 8665 2.102757 AGGACTCATGTGCTGCAGATAG 59.897 50.000 20.43 11.92 43.30 2.08
4900 8666 2.102084 GGACTCATGTGCTGCAGATAGA 59.898 50.000 20.43 10.87 0.00 1.98
4901 8667 3.382855 GACTCATGTGCTGCAGATAGAG 58.617 50.000 20.43 23.99 0.00 2.43
4902 8668 2.765135 ACTCATGTGCTGCAGATAGAGT 59.235 45.455 24.83 24.83 0.00 3.24
4903 8669 3.197333 ACTCATGTGCTGCAGATAGAGTT 59.803 43.478 24.83 15.96 29.21 3.01
4904 8670 4.190001 CTCATGTGCTGCAGATAGAGTTT 58.810 43.478 20.43 0.00 0.00 2.66
4905 8671 4.186926 TCATGTGCTGCAGATAGAGTTTC 58.813 43.478 20.43 0.00 0.00 2.78
4906 8672 3.969287 TGTGCTGCAGATAGAGTTTCT 57.031 42.857 20.43 0.00 0.00 2.52
4907 8673 4.277515 TGTGCTGCAGATAGAGTTTCTT 57.722 40.909 20.43 0.00 0.00 2.52
4908 8674 4.248859 TGTGCTGCAGATAGAGTTTCTTC 58.751 43.478 20.43 0.00 0.00 2.87
4909 8675 3.620821 GTGCTGCAGATAGAGTTTCTTCC 59.379 47.826 20.43 0.00 0.00 3.46
4910 8676 3.202097 GCTGCAGATAGAGTTTCTTCCC 58.798 50.000 20.43 0.00 0.00 3.97
4911 8677 3.118445 GCTGCAGATAGAGTTTCTTCCCT 60.118 47.826 20.43 0.00 0.00 4.20
4912 8678 4.625083 GCTGCAGATAGAGTTTCTTCCCTT 60.625 45.833 20.43 0.00 0.00 3.95
4913 8679 5.495640 CTGCAGATAGAGTTTCTTCCCTTT 58.504 41.667 8.42 0.00 0.00 3.11
4914 8680 5.248640 TGCAGATAGAGTTTCTTCCCTTTG 58.751 41.667 0.00 0.00 0.00 2.77
4915 8681 4.095632 GCAGATAGAGTTTCTTCCCTTTGC 59.904 45.833 0.00 0.00 0.00 3.68
4916 8682 5.248640 CAGATAGAGTTTCTTCCCTTTGCA 58.751 41.667 0.00 0.00 0.00 4.08
4917 8683 5.353678 CAGATAGAGTTTCTTCCCTTTGCAG 59.646 44.000 0.00 0.00 0.00 4.41
4918 8684 3.864789 AGAGTTTCTTCCCTTTGCAGA 57.135 42.857 0.00 0.00 0.00 4.26
4919 8685 4.170468 AGAGTTTCTTCCCTTTGCAGAA 57.830 40.909 0.00 0.00 0.00 3.02
4950 8716 4.301072 AGCTACTGCATTACCTGGAAAA 57.699 40.909 0.00 0.00 42.74 2.29
5043 8809 4.104383 TCTTGCATTTGTTCTCCTTCCT 57.896 40.909 0.00 0.00 0.00 3.36
5044 8810 3.822735 TCTTGCATTTGTTCTCCTTCCTG 59.177 43.478 0.00 0.00 0.00 3.86
5079 8845 4.093408 TGTTTAATCAGCTGAGATGCGTTC 59.907 41.667 22.96 8.00 38.13 3.95
5258 9109 6.183360 TGTCTGCTTACTAGTCTGTTCTTGTT 60.183 38.462 0.00 0.00 0.00 2.83
5276 9127 2.026636 TGTTGATGGCCCAGTAACCTAC 60.027 50.000 0.00 0.00 0.00 3.18
5305 9156 5.388890 GCTTATACTTCGATGCTGGAATTCG 60.389 44.000 0.00 0.00 0.00 3.34
5451 9302 8.514594 TCAATCAAATGTGATAGAAGGACAAAC 58.485 33.333 0.00 0.00 44.02 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 4.980903 GCAACCAACGGCGTGCTG 62.981 66.667 15.70 9.36 35.14 4.41
20 21 2.594303 TGGAGCTGCAACCAACGG 60.594 61.111 5.01 0.00 32.93 4.44
68 3351 3.020984 GTTTCTTTTCTCCACCACCACA 58.979 45.455 0.00 0.00 0.00 4.17
75 3358 5.290386 TCTCTCTTCGTTTCTTTTCTCCAC 58.710 41.667 0.00 0.00 0.00 4.02
90 3373 1.756538 CTCCCTGCCTTCTCTCTCTTC 59.243 57.143 0.00 0.00 0.00 2.87
91 3374 1.360852 TCTCCCTGCCTTCTCTCTCTT 59.639 52.381 0.00 0.00 0.00 2.85
93 3376 1.341976 ACTCTCCCTGCCTTCTCTCTC 60.342 57.143 0.00 0.00 0.00 3.20
158 3441 2.159517 CCATAAGAAAAGCGGCAGTGAC 60.160 50.000 1.45 0.00 0.00 3.67
159 3442 2.083774 CCATAAGAAAAGCGGCAGTGA 58.916 47.619 1.45 0.00 0.00 3.41
160 3443 1.133025 CCCATAAGAAAAGCGGCAGTG 59.867 52.381 1.45 0.00 0.00 3.66
161 3444 1.463674 CCCATAAGAAAAGCGGCAGT 58.536 50.000 1.45 0.00 0.00 4.40
162 3445 0.740737 CCCCATAAGAAAAGCGGCAG 59.259 55.000 1.45 0.00 0.00 4.85
163 3446 1.319614 GCCCCATAAGAAAAGCGGCA 61.320 55.000 1.45 0.00 34.98 5.69
164 3447 1.437573 GCCCCATAAGAAAAGCGGC 59.562 57.895 0.00 0.00 0.00 6.53
165 3448 1.391933 GGGCCCCATAAGAAAAGCGG 61.392 60.000 12.23 0.00 0.00 5.52
166 3449 1.724582 CGGGCCCCATAAGAAAAGCG 61.725 60.000 18.66 0.00 0.00 4.68
167 3450 2.016393 GCGGGCCCCATAAGAAAAGC 62.016 60.000 18.66 5.59 0.00 3.51
168 3451 0.682855 TGCGGGCCCCATAAGAAAAG 60.683 55.000 18.66 0.00 0.00 2.27
169 3452 0.968393 GTGCGGGCCCCATAAGAAAA 60.968 55.000 18.66 0.00 0.00 2.29
170 3453 1.379309 GTGCGGGCCCCATAAGAAA 60.379 57.895 18.66 0.00 0.00 2.52
171 3454 2.274104 GTGCGGGCCCCATAAGAA 59.726 61.111 18.66 0.00 0.00 2.52
172 3455 4.169696 CGTGCGGGCCCCATAAGA 62.170 66.667 18.66 0.00 0.00 2.10
173 3456 4.169696 TCGTGCGGGCCCCATAAG 62.170 66.667 18.66 10.89 0.00 1.73
174 3457 4.169696 CTCGTGCGGGCCCCATAA 62.170 66.667 18.66 6.77 0.00 1.90
182 3465 2.752322 TAAACGTGTCCTCGTGCGGG 62.752 60.000 0.00 0.00 43.38 6.13
183 3466 0.940519 TTAAACGTGTCCTCGTGCGG 60.941 55.000 0.00 0.00 43.38 5.69
184 3467 0.160182 GTTAAACGTGTCCTCGTGCG 59.840 55.000 0.00 0.00 43.38 5.34
185 3468 0.160182 CGTTAAACGTGTCCTCGTGC 59.840 55.000 0.00 0.00 43.38 5.34
210 3493 2.736995 CGACACGCAACCATCCGT 60.737 61.111 0.00 0.00 38.35 4.69
221 3504 1.548973 GAACTGACCAGTGCGACACG 61.549 60.000 3.13 0.00 41.58 4.49
222 3505 2.226269 GAACTGACCAGTGCGACAC 58.774 57.895 3.13 2.28 41.58 3.67
223 3506 4.750460 GAACTGACCAGTGCGACA 57.250 55.556 3.13 0.00 41.58 4.35
227 3510 1.795768 TTGATCGAACTGACCAGTGC 58.204 50.000 3.13 0.41 41.58 4.40
228 3511 3.996363 TGATTTGATCGAACTGACCAGTG 59.004 43.478 3.13 0.00 41.58 3.66
229 3512 4.021104 TCTGATTTGATCGAACTGACCAGT 60.021 41.667 0.00 0.00 44.94 4.00
230 3513 4.498241 TCTGATTTGATCGAACTGACCAG 58.502 43.478 0.00 1.89 0.00 4.00
231 3514 4.535526 TCTGATTTGATCGAACTGACCA 57.464 40.909 0.00 0.00 0.00 4.02
232 3515 4.509600 GGATCTGATTTGATCGAACTGACC 59.490 45.833 0.00 3.90 42.63 4.02
233 3516 5.111989 TGGATCTGATTTGATCGAACTGAC 58.888 41.667 0.00 0.00 42.63 3.51
234 3517 5.343307 TGGATCTGATTTGATCGAACTGA 57.657 39.130 0.00 3.06 42.63 3.41
238 3521 4.566759 GTCGTTGGATCTGATTTGATCGAA 59.433 41.667 0.00 0.00 42.63 3.71
239 3522 4.112634 GTCGTTGGATCTGATTTGATCGA 58.887 43.478 0.00 0.00 42.63 3.59
240 3523 3.060940 CGTCGTTGGATCTGATTTGATCG 60.061 47.826 0.00 0.00 42.63 3.69
241 3524 3.302740 GCGTCGTTGGATCTGATTTGATC 60.303 47.826 0.00 0.00 41.39 2.92
242 3525 2.609459 GCGTCGTTGGATCTGATTTGAT 59.391 45.455 0.00 0.00 0.00 2.57
243 3526 1.999735 GCGTCGTTGGATCTGATTTGA 59.000 47.619 0.00 0.00 0.00 2.69
244 3527 1.731709 TGCGTCGTTGGATCTGATTTG 59.268 47.619 0.00 0.00 0.00 2.32
245 3528 1.732259 GTGCGTCGTTGGATCTGATTT 59.268 47.619 0.00 0.00 0.00 2.17
246 3529 1.359848 GTGCGTCGTTGGATCTGATT 58.640 50.000 0.00 0.00 0.00 2.57
247 3530 0.802222 CGTGCGTCGTTGGATCTGAT 60.802 55.000 0.00 0.00 34.52 2.90
248 3531 1.443702 CGTGCGTCGTTGGATCTGA 60.444 57.895 0.00 0.00 34.52 3.27
249 3532 3.072598 CGTGCGTCGTTGGATCTG 58.927 61.111 0.00 0.00 34.52 2.90
290 3573 1.966451 CCTTTCCACTCGGTGCACC 60.966 63.158 26.78 26.78 31.34 5.01
291 3574 0.818040 AACCTTTCCACTCGGTGCAC 60.818 55.000 8.80 8.80 31.34 4.57
292 3575 0.106918 AAACCTTTCCACTCGGTGCA 60.107 50.000 0.00 0.00 31.34 4.57
293 3576 0.591659 GAAACCTTTCCACTCGGTGC 59.408 55.000 0.00 0.00 31.34 5.01
311 3594 1.009552 TGCTCCCTCTTCCTTATGGGA 59.990 52.381 0.00 0.00 45.58 4.37
312 3595 1.511613 TGCTCCCTCTTCCTTATGGG 58.488 55.000 0.00 0.00 40.95 4.00
313 3596 2.441001 ACATGCTCCCTCTTCCTTATGG 59.559 50.000 0.00 0.00 0.00 2.74
314 3597 3.474600 CACATGCTCCCTCTTCCTTATG 58.525 50.000 0.00 0.00 0.00 1.90
315 3598 2.441001 CCACATGCTCCCTCTTCCTTAT 59.559 50.000 0.00 0.00 0.00 1.73
316 3599 1.839994 CCACATGCTCCCTCTTCCTTA 59.160 52.381 0.00 0.00 0.00 2.69
317 3600 0.622665 CCACATGCTCCCTCTTCCTT 59.377 55.000 0.00 0.00 0.00 3.36
318 3601 1.277580 CCCACATGCTCCCTCTTCCT 61.278 60.000 0.00 0.00 0.00 3.36
319 3602 1.225704 CCCACATGCTCCCTCTTCC 59.774 63.158 0.00 0.00 0.00 3.46
320 3603 1.225704 CCCCACATGCTCCCTCTTC 59.774 63.158 0.00 0.00 0.00 2.87
321 3604 2.988839 GCCCCACATGCTCCCTCTT 61.989 63.158 0.00 0.00 0.00 2.85
322 3605 3.415087 GCCCCACATGCTCCCTCT 61.415 66.667 0.00 0.00 0.00 3.69
323 3606 4.512914 GGCCCCACATGCTCCCTC 62.513 72.222 0.00 0.00 0.00 4.30
326 3609 4.864334 CTCGGCCCCACATGCTCC 62.864 72.222 0.00 0.00 0.00 4.70
327 3610 3.746949 CTCTCGGCCCCACATGCTC 62.747 68.421 0.00 0.00 0.00 4.26
328 3611 3.790437 CTCTCGGCCCCACATGCT 61.790 66.667 0.00 0.00 0.00 3.79
329 3612 4.864334 CCTCTCGGCCCCACATGC 62.864 72.222 0.00 0.00 0.00 4.06
330 3613 4.181010 CCCTCTCGGCCCCACATG 62.181 72.222 0.00 0.00 0.00 3.21
348 3631 3.133464 AATCATGCGGCCCACGTG 61.133 61.111 9.08 9.08 46.52 4.49
349 3632 3.133464 CAATCATGCGGCCCACGT 61.133 61.111 0.00 0.00 46.52 4.49
350 3633 4.557605 GCAATCATGCGGCCCACG 62.558 66.667 0.00 0.00 43.83 4.94
358 3641 6.289319 ACGTACGATCGAAAGCAATCATGC 62.289 45.833 24.34 0.00 42.35 4.06
359 3642 3.242944 ACGTACGATCGAAAGCAATCATG 59.757 43.478 24.34 3.19 34.70 3.07
360 3643 3.242944 CACGTACGATCGAAAGCAATCAT 59.757 43.478 24.34 0.00 34.70 2.45
361 3644 2.596862 CACGTACGATCGAAAGCAATCA 59.403 45.455 24.34 0.00 34.70 2.57
362 3645 2.850060 TCACGTACGATCGAAAGCAATC 59.150 45.455 24.34 1.87 34.70 2.67
363 3646 2.597305 GTCACGTACGATCGAAAGCAAT 59.403 45.455 24.34 0.00 34.70 3.56
364 3647 1.980844 GTCACGTACGATCGAAAGCAA 59.019 47.619 24.34 0.00 34.70 3.91
365 3648 1.609932 GTCACGTACGATCGAAAGCA 58.390 50.000 24.34 0.00 34.70 3.91
366 3649 0.912528 GGTCACGTACGATCGAAAGC 59.087 55.000 24.34 7.45 34.70 3.51
367 3650 1.177668 CGGTCACGTACGATCGAAAG 58.822 55.000 24.34 13.92 42.18 2.62
368 3651 0.179192 CCGGTCACGTACGATCGAAA 60.179 55.000 24.34 6.46 42.18 3.46
369 3652 1.425031 CCGGTCACGTACGATCGAA 59.575 57.895 24.34 0.00 42.18 3.71
370 3653 3.092403 CCGGTCACGTACGATCGA 58.908 61.111 24.34 12.27 42.18 3.59
371 3654 2.649975 GCCGGTCACGTACGATCG 60.650 66.667 24.41 14.88 39.27 3.69
372 3655 2.278401 GGCCGGTCACGTACGATC 60.278 66.667 24.41 11.04 38.78 3.69
373 3656 4.183686 CGGCCGGTCACGTACGAT 62.184 66.667 24.41 3.10 38.86 3.73
375 3658 4.403137 TTCGGCCGGTCACGTACG 62.403 66.667 27.83 15.01 38.78 3.67
376 3659 2.806621 GTTCGGCCGGTCACGTAC 60.807 66.667 27.83 8.05 38.78 3.67
377 3660 4.403137 CGTTCGGCCGGTCACGTA 62.403 66.667 27.83 0.00 38.78 3.57
380 3663 3.408851 GAACGTTCGGCCGGTCAC 61.409 66.667 27.83 18.34 43.89 3.67
381 3664 4.668118 GGAACGTTCGGCCGGTCA 62.668 66.667 27.83 6.94 46.21 4.02
405 3688 3.194272 AAACGTTTCCCTGCTGCGC 62.194 57.895 7.96 0.00 0.00 6.09
406 3689 1.082104 GAAACGTTTCCCTGCTGCG 60.082 57.895 27.01 0.00 0.00 5.18
407 3690 4.944249 GAAACGTTTCCCTGCTGC 57.056 55.556 27.01 3.17 0.00 5.25
418 3701 9.849166 CAAGTATGTTTTATTTATGGGAAACGT 57.151 29.630 0.00 0.00 35.36 3.99
423 3706 9.184523 CCACTCAAGTATGTTTTATTTATGGGA 57.815 33.333 0.00 0.00 0.00 4.37
424 3707 7.920682 GCCACTCAAGTATGTTTTATTTATGGG 59.079 37.037 0.00 0.00 0.00 4.00
425 3708 7.920682 GGCCACTCAAGTATGTTTTATTTATGG 59.079 37.037 0.00 0.00 0.00 2.74
426 3709 8.686334 AGGCCACTCAAGTATGTTTTATTTATG 58.314 33.333 5.01 0.00 0.00 1.90
437 3720 3.857052 TCGTTAAGGCCACTCAAGTATG 58.143 45.455 5.01 0.00 0.00 2.39
438 3721 3.679083 GCTCGTTAAGGCCACTCAAGTAT 60.679 47.826 5.01 0.00 0.00 2.12
439 3722 2.353406 GCTCGTTAAGGCCACTCAAGTA 60.353 50.000 5.01 0.00 0.00 2.24
440 3723 1.608283 GCTCGTTAAGGCCACTCAAGT 60.608 52.381 5.01 0.00 0.00 3.16
441 3724 1.079503 GCTCGTTAAGGCCACTCAAG 58.920 55.000 5.01 0.00 0.00 3.02
442 3725 0.394938 TGCTCGTTAAGGCCACTCAA 59.605 50.000 5.01 0.00 0.00 3.02
443 3726 0.394938 TTGCTCGTTAAGGCCACTCA 59.605 50.000 5.01 0.00 0.00 3.41
487 3770 5.411361 CACTTGTTGTAGCAGCTGGTTATAA 59.589 40.000 25.47 13.65 0.00 0.98
490 3773 3.138304 CACTTGTTGTAGCAGCTGGTTA 58.862 45.455 25.47 11.09 0.00 2.85
578 4216 1.599606 CGGAGTGTGAGGAGGTGGAG 61.600 65.000 0.00 0.00 0.00 3.86
579 4217 1.606601 CGGAGTGTGAGGAGGTGGA 60.607 63.158 0.00 0.00 0.00 4.02
580 4218 2.973899 CGGAGTGTGAGGAGGTGG 59.026 66.667 0.00 0.00 0.00 4.61
581 4219 2.262915 GCGGAGTGTGAGGAGGTG 59.737 66.667 0.00 0.00 0.00 4.00
582 4220 2.997897 GGCGGAGTGTGAGGAGGT 60.998 66.667 0.00 0.00 0.00 3.85
631 4269 3.791928 CTCGCCTCGTCGATGGTCG 62.792 68.421 4.48 6.31 42.10 4.79
660 4298 2.361104 GGTGAGGAATGCGGGCAA 60.361 61.111 0.00 0.00 0.00 4.52
661 4299 4.776322 CGGTGAGGAATGCGGGCA 62.776 66.667 0.00 0.00 0.00 5.36
797 4465 4.214327 GAAGCCGGGGAGAGAGCG 62.214 72.222 2.18 0.00 0.00 5.03
798 4466 3.855853 GGAAGCCGGGGAGAGAGC 61.856 72.222 2.18 0.00 0.00 4.09
866 4566 2.807895 ACACGTCCCGCGAAATCG 60.808 61.111 8.23 9.55 44.77 3.34
930 4633 3.003173 CCCTCCCTGCGAACCAGA 61.003 66.667 0.00 0.00 44.64 3.86
931 4634 3.003173 TCCCTCCCTGCGAACCAG 61.003 66.667 0.00 0.00 41.41 4.00
932 4635 3.003173 CTCCCTCCCTGCGAACCA 61.003 66.667 0.00 0.00 0.00 3.67
934 4637 3.394836 AGCTCCCTCCCTGCGAAC 61.395 66.667 0.00 0.00 0.00 3.95
936 4639 4.704103 ACAGCTCCCTCCCTGCGA 62.704 66.667 0.00 0.00 32.37 5.10
937 4640 4.154347 GACAGCTCCCTCCCTGCG 62.154 72.222 0.00 0.00 32.37 5.18
938 4641 1.381872 TAGACAGCTCCCTCCCTGC 60.382 63.158 0.00 0.00 32.37 4.85
975 4685 2.125350 GAACTGCCTGGAGAGCGG 60.125 66.667 0.00 0.00 42.55 5.52
1020 4730 1.814429 TCGAGGAGAGGAGAGGAGAT 58.186 55.000 0.00 0.00 0.00 2.75
1038 4748 3.678072 TGTGACGACAAAGAATCGGAATC 59.322 43.478 0.00 0.00 43.95 2.52
1039 4749 3.659786 TGTGACGACAAAGAATCGGAAT 58.340 40.909 0.00 0.00 43.95 3.01
1041 4751 2.672714 CTGTGACGACAAAGAATCGGA 58.327 47.619 0.00 0.00 43.95 4.55
1042 4752 1.126846 GCTGTGACGACAAAGAATCGG 59.873 52.381 9.35 0.00 43.95 4.18
1087 4819 5.906073 ACAACATGAAGAAAAGGAAACCAG 58.094 37.500 0.00 0.00 0.00 4.00
1108 4844 3.615224 TGCAGCACATCTGATCTAACA 57.385 42.857 0.00 0.00 45.72 2.41
1155 4893 2.373169 ACCAAAGTCTCCAGATTGCAGA 59.627 45.455 0.00 0.00 0.00 4.26
1193 4931 8.991026 CAAGATCACATTTTGCAAATCCTAAAA 58.009 29.630 13.65 0.00 0.00 1.52
1194 4932 7.603404 CCAAGATCACATTTTGCAAATCCTAAA 59.397 33.333 13.65 0.00 0.00 1.85
1195 4933 7.039152 TCCAAGATCACATTTTGCAAATCCTAA 60.039 33.333 13.65 0.00 0.00 2.69
1196 4934 6.436847 TCCAAGATCACATTTTGCAAATCCTA 59.563 34.615 13.65 0.00 0.00 2.94
1201 4939 5.273674 TGTCCAAGATCACATTTTGCAAA 57.726 34.783 8.05 8.05 0.00 3.68
1225 4964 3.220507 TCAAGAATGAATTTGCTGCCG 57.779 42.857 0.00 0.00 30.99 5.69
1253 4992 2.872408 ATGGAAACCTCGCCATGTG 58.128 52.632 0.00 0.00 43.04 3.21
1259 4998 2.271800 CACTAGACATGGAAACCTCGC 58.728 52.381 0.00 0.00 0.00 5.03
1284 5023 7.334421 TCCAAATTAAAGACTGCTAAGTGCTAG 59.666 37.037 0.00 0.00 43.37 3.42
1309 5049 3.059325 GCATGAATCATCACTAGCGGTTC 60.059 47.826 0.00 0.00 38.69 3.62
1317 5057 4.277672 GCAACCATAGCATGAATCATCACT 59.722 41.667 0.00 0.00 38.69 3.41
1322 5062 2.916640 TCGCAACCATAGCATGAATCA 58.083 42.857 0.00 0.00 0.00 2.57
1326 5066 1.334556 GCAATCGCAACCATAGCATGA 59.665 47.619 0.00 0.00 38.36 3.07
1388 5128 2.669434 CGATCCAACCGAACATTTACGT 59.331 45.455 0.00 0.00 0.00 3.57
1397 5137 3.068560 CACCTTTTACGATCCAACCGAA 58.931 45.455 0.00 0.00 0.00 4.30
1410 5150 5.420739 ACAGAAAGAAAACTGGCACCTTTTA 59.579 36.000 0.00 0.00 38.30 1.52
1419 5159 5.052633 CGCGTTTAAACAGAAAGAAAACTGG 60.053 40.000 18.07 0.00 38.30 4.00
1467 5208 2.158755 ACAAGAAACTAGCACAGCCACT 60.159 45.455 0.00 0.00 0.00 4.00
1480 5221 3.471680 AGTGAAGCCTCAGACAAGAAAC 58.528 45.455 0.00 0.00 30.14 2.78
1489 5230 0.725686 CATCGCAAGTGAAGCCTCAG 59.274 55.000 0.00 0.00 39.48 3.35
1516 5257 1.891919 GCCACAAGCCGACAACAGA 60.892 57.895 0.00 0.00 34.35 3.41
1524 5265 4.988598 ACACCGAGCCACAAGCCG 62.989 66.667 0.00 0.00 45.47 5.52
1526 5267 0.882927 TAACACACCGAGCCACAAGC 60.883 55.000 0.00 0.00 44.25 4.01
1531 5272 1.376683 GGCATAACACACCGAGCCA 60.377 57.895 0.00 0.00 41.63 4.75
1552 5293 5.889853 AGCAATGGAGAAGAGAAATAATGCA 59.110 36.000 0.00 0.00 0.00 3.96
1555 5296 6.320672 CACCAGCAATGGAGAAGAGAAATAAT 59.679 38.462 0.31 0.00 0.00 1.28
1597 5338 2.682856 ACACAACTCAAACGCACAGAAT 59.317 40.909 0.00 0.00 0.00 2.40
1618 5359 6.210584 TCCACTATCTGTAACATGAGTGACAA 59.789 38.462 0.00 0.00 38.65 3.18
1657 5398 3.616821 TCGTCCAATTCGAACACATCATC 59.383 43.478 0.00 0.00 34.36 2.92
1664 5405 0.672401 GCCCTCGTCCAATTCGAACA 60.672 55.000 0.00 0.00 36.89 3.18
1677 5418 0.816825 CCTGACCATCATTGCCCTCG 60.817 60.000 0.00 0.00 0.00 4.63
1682 5423 0.819582 CCCAACCTGACCATCATTGC 59.180 55.000 0.00 0.00 0.00 3.56
1721 5462 3.400007 GAGCATCCGCGTTTCTCC 58.600 61.111 4.92 0.00 45.49 3.71
1751 5492 1.078143 CTTACCTGCCTCACCAGCC 60.078 63.158 0.00 0.00 0.00 4.85
1837 5582 9.424319 TCAGACTAAGATCAAAGTCATAACAAC 57.576 33.333 22.30 2.01 43.74 3.32
1855 5600 8.585018 TCAGATCAGTAACAAACATCAGACTAA 58.415 33.333 0.00 0.00 0.00 2.24
1880 5625 0.533755 CCATCCCATCAGCGTCCTTC 60.534 60.000 0.00 0.00 0.00 3.46
1904 5649 2.747855 GCAGAAGGAGTTGCCCCG 60.748 66.667 0.00 0.00 37.37 5.73
1911 5656 1.926108 ACTAACGAGGCAGAAGGAGT 58.074 50.000 0.00 0.00 0.00 3.85
2088 5836 0.759346 ACTGCACTTTCGTCCCTCTT 59.241 50.000 0.00 0.00 0.00 2.85
2106 5854 2.483876 TGCAAGAAGTAGTGACAGCAC 58.516 47.619 0.00 0.00 45.49 4.40
2208 5956 4.669318 GTCATCTTCCTGCATTTCACATG 58.331 43.478 0.00 0.00 0.00 3.21
2209 5957 3.376234 CGTCATCTTCCTGCATTTCACAT 59.624 43.478 0.00 0.00 0.00 3.21
2225 5973 1.202313 GCTACCCACTGAGTCGTCATC 60.202 57.143 0.00 0.00 30.18 2.92
2275 6023 7.936847 TCATCATCATCATCATCATCTTCAACA 59.063 33.333 0.00 0.00 0.00 3.33
2287 6035 8.429641 TCATCTTCTTCTTCATCATCATCATCA 58.570 33.333 0.00 0.00 0.00 3.07
2290 6038 8.429641 TCATCATCTTCTTCTTCATCATCATCA 58.570 33.333 0.00 0.00 0.00 3.07
2293 6041 9.628500 AAATCATCATCTTCTTCTTCATCATCA 57.372 29.630 0.00 0.00 0.00 3.07
2296 6044 9.457436 TCAAAATCATCATCTTCTTCTTCATCA 57.543 29.630 0.00 0.00 0.00 3.07
2316 6064 7.543359 TCATCCCAGTCTTCAAAATCAAAAT 57.457 32.000 0.00 0.00 0.00 1.82
2343 6091 0.899720 CCTTTGGCCAGCATCAACAT 59.100 50.000 5.11 0.00 0.00 2.71
2365 6113 2.182827 CCAGAACCATCAGAGTGAGGA 58.817 52.381 0.00 0.00 27.97 3.71
2369 6117 3.055602 TCATCACCAGAACCATCAGAGTG 60.056 47.826 0.00 0.00 0.00 3.51
2396 6144 9.817809 TTACCAAGCTGAAGATAAGTAAGTATG 57.182 33.333 0.00 0.00 0.00 2.39
2424 6172 9.865321 CACAATCCACATAATCAAAGAAATTCT 57.135 29.630 0.00 0.00 0.00 2.40
2458 6207 7.013178 ACAGATCAACAATGTTTCACATGTACA 59.987 33.333 0.00 0.00 37.97 2.90
2459 6208 7.362662 ACAGATCAACAATGTTTCACATGTAC 58.637 34.615 0.00 0.00 37.97 2.90
2588 6351 9.872684 AGATAACCCATAAATCATGAAAGTGAT 57.127 29.630 0.00 0.00 40.44 3.06
2636 6399 2.697431 TAAATGTGTTTGCAGCGTCC 57.303 45.000 0.00 0.00 0.00 4.79
2662 6425 5.677598 GCTTACTTGACACAGCTACCTAGAG 60.678 48.000 0.00 0.00 0.00 2.43
2687 6450 4.082733 TGAACTCAGTCCAGTACTTCATCG 60.083 45.833 0.00 0.00 35.76 3.84
2802 6565 4.805609 GCACAAGACCTGAAGAAAGGAGAT 60.806 45.833 0.00 0.00 40.02 2.75
2803 6566 3.495100 GCACAAGACCTGAAGAAAGGAGA 60.495 47.826 0.00 0.00 40.02 3.71
2894 6657 4.623932 AAGCACTTTCTACATCTCACCA 57.376 40.909 0.00 0.00 0.00 4.17
2921 6684 4.563976 CACAAAAGAACAGCAAAACAGAGG 59.436 41.667 0.00 0.00 0.00 3.69
2949 6712 4.835615 ACTGTGACATCTCTTGTAGGAACT 59.164 41.667 0.00 0.00 39.18 3.01
2950 6713 5.140747 ACTGTGACATCTCTTGTAGGAAC 57.859 43.478 0.00 0.00 39.18 3.62
2957 6720 3.732212 TGTCCAACTGTGACATCTCTTG 58.268 45.455 0.00 0.00 37.80 3.02
2962 6725 2.221169 TGCTTGTCCAACTGTGACATC 58.779 47.619 2.31 0.02 41.99 3.06
2973 6736 3.228188 AGGACTTGATTTGCTTGTCCA 57.772 42.857 12.16 0.00 46.81 4.02
3030 6793 5.537188 CCATACCACATCTTCTAAGAGCTC 58.463 45.833 5.27 5.27 38.66 4.09
3031 6794 4.202305 GCCATACCACATCTTCTAAGAGCT 60.202 45.833 0.00 0.00 38.66 4.09
3059 6822 5.830912 TCATCAAGCCAACAACTACAAAAG 58.169 37.500 0.00 0.00 0.00 2.27
3061 6824 6.403866 AATCATCAAGCCAACAACTACAAA 57.596 33.333 0.00 0.00 0.00 2.83
3079 6842 8.757982 AAGTATGATCAACAAAGCCTAATCAT 57.242 30.769 0.00 0.00 37.54 2.45
3135 6898 1.064017 AGACCTGGCCAAGTTTGAACA 60.064 47.619 8.78 0.00 0.00 3.18
3175 6938 6.932960 TGTGATGCATAGATAGAATCAACCAG 59.067 38.462 0.00 0.00 0.00 4.00
3202 6965 2.292267 GCAATGTACCTCAGGGTCATG 58.708 52.381 0.00 0.00 45.98 3.07
3203 6966 1.915489 TGCAATGTACCTCAGGGTCAT 59.085 47.619 0.00 0.00 45.98 3.06
3209 6972 3.207474 GCAAACTGCAATGTACCTCAG 57.793 47.619 0.00 0.00 44.26 3.35
3251 7014 6.858478 TCAATGCATCGAAATTAACAACGAAA 59.142 30.769 0.00 0.00 38.22 3.46
3258 7021 5.512788 CCAGTGTCAATGCATCGAAATTAAC 59.487 40.000 0.00 0.00 0.00 2.01
3271 7034 3.670055 GCAAACGAATTCCAGTGTCAATG 59.330 43.478 0.00 0.00 0.00 2.82
3287 7050 3.270027 TCTCATCCATAACCTGCAAACG 58.730 45.455 0.00 0.00 0.00 3.60
3325 7088 2.586425 CTTGCTTTCTTTCTCCCCACA 58.414 47.619 0.00 0.00 0.00 4.17
3346 7109 5.580297 CCTCTTCTTGCTATCTTCTGTGAAC 59.420 44.000 0.00 0.00 0.00 3.18
3538 7304 3.689347 AGCAAGTGCCACATTCTCATAA 58.311 40.909 0.00 0.00 43.38 1.90
3591 7357 4.780021 ACTCTGGCTCAATACCATATAGGG 59.220 45.833 0.82 0.82 43.89 3.53
3796 7562 0.388391 GCTTTGCGCTTGCCATACAA 60.388 50.000 9.73 0.00 38.03 2.41
3852 7618 0.036010 AGCTTGAGTTGGTGGATCGG 60.036 55.000 0.00 0.00 0.00 4.18
3881 7647 1.563435 CTGCACTCTTCCAGCACACG 61.563 60.000 0.00 0.00 34.13 4.49
3882 7648 1.233285 CCTGCACTCTTCCAGCACAC 61.233 60.000 0.00 0.00 34.13 3.82
3922 7688 1.592543 GCAGCAACTTTGTTTTTCCCG 59.407 47.619 0.00 0.00 0.00 5.14
3951 7717 4.313020 AGCAGAAACTCCATTTCCAGAT 57.687 40.909 0.00 0.00 46.94 2.90
4003 7769 5.401674 GCATTTGTCTCTCTTTTTCTTGCTG 59.598 40.000 0.00 0.00 0.00 4.41
4252 8018 4.082245 TGCACATCACGAAACTCTATCAGA 60.082 41.667 0.00 0.00 0.00 3.27
4297 8063 4.201753 CCAAGTTGTCTGATAAGTGATGCG 60.202 45.833 1.45 0.00 0.00 4.73
4448 8214 4.380531 ACATTCGCCATAATCGACTTGAT 58.619 39.130 0.00 0.00 39.67 2.57
4450 8216 4.150627 CCTACATTCGCCATAATCGACTTG 59.849 45.833 0.00 0.00 35.51 3.16
4582 8348 3.944087 ACACAGAGCTCCAAGTTTATCC 58.056 45.455 10.93 0.00 0.00 2.59
4589 8355 2.095364 GCATCAAACACAGAGCTCCAAG 60.095 50.000 10.93 3.28 0.00 3.61
4657 8423 6.705863 AGTTTCTTCTCTGTCAGCAAAAAT 57.294 33.333 0.00 0.00 0.00 1.82
4718 8484 8.017373 AGTGTAGAATGAAAACACAATGAATCG 58.983 33.333 7.49 0.00 44.68 3.34
4724 8490 7.202526 CCACAAGTGTAGAATGAAAACACAAT 58.797 34.615 7.49 0.00 44.68 2.71
4729 8495 5.507315 CCACCCACAAGTGTAGAATGAAAAC 60.507 44.000 0.00 0.00 35.93 2.43
4876 8642 1.072806 TCTGCAGCACATGAGTCCTTT 59.927 47.619 9.47 0.00 0.00 3.11
4896 8662 5.505181 TCTGCAAAGGGAAGAAACTCTAT 57.495 39.130 0.00 0.00 0.00 1.98
4897 8663 4.974645 TCTGCAAAGGGAAGAAACTCTA 57.025 40.909 0.00 0.00 0.00 2.43
4898 8664 3.864789 TCTGCAAAGGGAAGAAACTCT 57.135 42.857 0.00 0.00 0.00 3.24
4899 8665 4.918810 TTTCTGCAAAGGGAAGAAACTC 57.081 40.909 0.00 0.00 35.54 3.01
4900 8666 6.306987 TCTATTTCTGCAAAGGGAAGAAACT 58.693 36.000 0.00 0.00 41.38 2.66
4901 8667 6.349694 CCTCTATTTCTGCAAAGGGAAGAAAC 60.350 42.308 0.00 0.00 41.38 2.78
4902 8668 5.711976 CCTCTATTTCTGCAAAGGGAAGAAA 59.288 40.000 0.27 0.27 42.41 2.52
4903 8669 5.256474 CCTCTATTTCTGCAAAGGGAAGAA 58.744 41.667 0.00 0.00 0.00 2.52
4904 8670 4.848357 CCTCTATTTCTGCAAAGGGAAGA 58.152 43.478 0.00 0.00 0.00 2.87
4905 8671 3.379688 GCCTCTATTTCTGCAAAGGGAAG 59.620 47.826 0.00 0.00 0.00 3.46
4906 8672 3.010584 AGCCTCTATTTCTGCAAAGGGAA 59.989 43.478 0.00 0.00 0.00 3.97
4907 8673 2.578021 AGCCTCTATTTCTGCAAAGGGA 59.422 45.455 0.00 0.00 0.00 4.20
4908 8674 3.010200 AGCCTCTATTTCTGCAAAGGG 57.990 47.619 0.00 0.00 0.00 3.95
4909 8675 3.563390 GCTAGCCTCTATTTCTGCAAAGG 59.437 47.826 2.29 0.00 0.00 3.11
4910 8676 4.450053 AGCTAGCCTCTATTTCTGCAAAG 58.550 43.478 12.13 0.00 0.00 2.77
4911 8677 4.494091 AGCTAGCCTCTATTTCTGCAAA 57.506 40.909 12.13 0.00 0.00 3.68
4912 8678 4.651503 AGTAGCTAGCCTCTATTTCTGCAA 59.348 41.667 12.13 0.00 0.00 4.08
4913 8679 4.038522 CAGTAGCTAGCCTCTATTTCTGCA 59.961 45.833 12.13 0.00 0.00 4.41
4914 8680 4.555262 CAGTAGCTAGCCTCTATTTCTGC 58.445 47.826 12.13 0.00 0.00 4.26
4915 8681 4.038522 TGCAGTAGCTAGCCTCTATTTCTG 59.961 45.833 12.13 6.40 42.74 3.02
4916 8682 4.219115 TGCAGTAGCTAGCCTCTATTTCT 58.781 43.478 12.13 0.00 42.74 2.52
4917 8683 4.592485 TGCAGTAGCTAGCCTCTATTTC 57.408 45.455 12.13 1.83 42.74 2.17
4918 8684 5.559148 AATGCAGTAGCTAGCCTCTATTT 57.441 39.130 12.13 0.00 42.74 1.40
4919 8685 5.046950 GGTAATGCAGTAGCTAGCCTCTATT 60.047 44.000 15.59 9.83 42.74 1.73
4950 8716 6.213195 TCTCCAATTTCCCAGCACATAAATTT 59.787 34.615 0.00 0.00 31.05 1.82
4953 8719 4.671831 TCTCCAATTTCCCAGCACATAAA 58.328 39.130 0.00 0.00 0.00 1.40
5107 8873 3.119137 AGCTTGTTTGGTGGAAACTGAAC 60.119 43.478 0.00 0.00 43.90 3.18
5219 9070 7.324178 AGTAAGCAGACATGAACTTACCTTAG 58.676 38.462 18.92 0.00 43.47 2.18
5228 9079 5.715070 ACAGACTAGTAAGCAGACATGAAC 58.285 41.667 0.00 0.00 0.00 3.18
5230 9081 5.712446 AGAACAGACTAGTAAGCAGACATGA 59.288 40.000 0.00 0.00 0.00 3.07
5231 9082 5.960113 AGAACAGACTAGTAAGCAGACATG 58.040 41.667 0.00 0.00 0.00 3.21
5258 9109 1.209621 GGTAGGTTACTGGGCCATCA 58.790 55.000 6.72 0.00 0.00 3.07
5305 9156 1.529244 ACTGGGTGCTTGCTTGACC 60.529 57.895 0.00 0.00 0.00 4.02
5451 9302 6.090358 ACTTTGTCGAAATACAGTGGTATTCG 59.910 38.462 15.84 15.84 46.79 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.