Multiple sequence alignment - TraesCS4B01G046800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G046800 chr4B 100.000 5977 0 0 1 5977 34026359 34032335 0.000000e+00 11038.0
1 TraesCS4B01G046800 chr4B 96.212 132 5 0 3069 3200 49713180 49713311 3.630000e-52 217.0
2 TraesCS4B01G046800 chr4B 93.069 101 4 3 2684 2784 23660871 23660774 1.740000e-30 145.0
3 TraesCS4B01G046800 chr4A 92.054 2819 158 30 3193 5977 579861629 579858843 0.000000e+00 3904.0
4 TraesCS4B01G046800 chr4A 88.739 1483 84 24 1 1429 579864581 579863128 0.000000e+00 1736.0
5 TraesCS4B01G046800 chr4A 86.355 1026 95 17 1675 2675 579862959 579861954 0.000000e+00 1077.0
6 TraesCS4B01G046800 chr4A 80.958 835 108 25 1370 2192 687394460 687395255 1.100000e-171 614.0
7 TraesCS4B01G046800 chr4A 97.419 310 7 1 2763 3071 579861935 579861626 1.480000e-145 527.0
8 TraesCS4B01G046800 chr4A 81.818 429 33 12 1225 1652 221701022 221701406 9.670000e-83 318.0
9 TraesCS4B01G046800 chr4A 81.043 211 23 9 1455 1665 579863133 579862940 1.040000e-32 152.0
10 TraesCS4B01G046800 chr4D 95.370 2160 78 8 3194 5348 22024051 22026193 0.000000e+00 3415.0
11 TraesCS4B01G046800 chr4D 90.473 1333 61 21 1775 3071 22022751 22024053 0.000000e+00 1698.0
12 TraesCS4B01G046800 chr4D 94.969 795 27 6 957 1745 22021972 22022759 0.000000e+00 1234.0
13 TraesCS4B01G046800 chr4D 92.799 736 43 5 1 732 22019141 22019870 0.000000e+00 1057.0
14 TraesCS4B01G046800 chr4D 90.954 608 44 6 5380 5977 22026194 22026800 0.000000e+00 808.0
15 TraesCS4B01G046800 chr6D 81.857 926 114 24 1319 2233 66627369 66626487 0.000000e+00 730.0
16 TraesCS4B01G046800 chr6D 81.641 926 115 25 1319 2233 66262373 66261492 0.000000e+00 717.0
17 TraesCS4B01G046800 chr6D 88.000 50 5 1 3002 3051 113475308 113475260 2.330000e-04 58.4
18 TraesCS4B01G046800 chr5B 80.174 918 124 29 1328 2233 649866343 649867214 8.450000e-178 634.0
19 TraesCS4B01G046800 chr5B 86.784 227 27 3 2009 2233 425669278 425669503 3.580000e-62 250.0
20 TraesCS4B01G046800 chr5B 96.124 129 5 0 3068 3196 436166721 436166849 1.690000e-50 211.0
21 TraesCS4B01G046800 chr5B 94.776 134 6 1 3066 3199 459050416 459050284 2.180000e-49 207.0
22 TraesCS4B01G046800 chr5B 90.265 113 7 3 2680 2790 464321833 464321723 1.740000e-30 145.0
23 TraesCS4B01G046800 chr5B 77.703 148 33 0 2914 3061 436818023 436817876 2.290000e-14 91.6
24 TraesCS4B01G046800 chr5B 90.164 61 6 0 2989 3049 78194887 78194947 4.970000e-11 80.5
25 TraesCS4B01G046800 chr1D 81.548 672 92 18 1574 2233 470455552 470456203 5.310000e-145 525.0
26 TraesCS4B01G046800 chr1D 93.939 99 2 3 2677 2774 440050453 440050358 4.830000e-31 147.0
27 TraesCS4B01G046800 chr1D 77.778 144 23 5 2911 3049 313296211 313296350 4.970000e-11 80.5
28 TraesCS4B01G046800 chr7A 80.626 671 99 17 1574 2233 63314085 63313435 1.940000e-134 490.0
29 TraesCS4B01G046800 chr7A 94.118 136 7 1 3069 3204 736383964 736384098 7.850000e-49 206.0
30 TraesCS4B01G046800 chr7A 81.250 160 22 6 5568 5725 63110272 63110119 8.130000e-24 122.0
31 TraesCS4B01G046800 chr3B 96.850 127 4 0 3069 3195 62947365 62947239 4.690000e-51 213.0
32 TraesCS4B01G046800 chr2B 95.489 133 6 0 3066 3198 353470311 353470443 4.690000e-51 213.0
33 TraesCS4B01G046800 chr6B 96.124 129 5 0 3069 3197 77323087 77322959 1.690000e-50 211.0
34 TraesCS4B01G046800 chr6B 82.857 140 22 2 2904 3043 566547155 566547018 2.260000e-24 124.0
35 TraesCS4B01G046800 chr7B 95.420 131 6 0 3068 3198 281384031 281384161 6.070000e-50 209.0
36 TraesCS4B01G046800 chr3A 89.375 160 14 3 3056 3214 716542124 716541967 1.310000e-46 198.0
37 TraesCS4B01G046800 chr1B 95.238 126 4 2 1226 1351 190284596 190284719 1.310000e-46 198.0
38 TraesCS4B01G046800 chr1B 76.126 444 63 21 1675 2096 190284972 190285394 6.110000e-45 193.0
39 TraesCS4B01G046800 chr2A 85.143 175 18 7 2901 3071 720387072 720386902 7.960000e-39 172.0
40 TraesCS4B01G046800 chr7D 93.878 98 4 1 2685 2782 141292085 141292180 4.830000e-31 147.0
41 TraesCS4B01G046800 chr7D 93.814 97 4 1 2684 2780 426558895 426558989 1.740000e-30 145.0
42 TraesCS4B01G046800 chr7D 94.681 94 3 1 2684 2777 448931405 448931314 1.740000e-30 145.0
43 TraesCS4B01G046800 chr2D 93.878 98 2 3 2684 2780 592288513 592288607 1.740000e-30 145.0
44 TraesCS4B01G046800 chr2D 91.509 106 6 2 2677 2781 53145716 53145819 6.240000e-30 143.0
45 TraesCS4B01G046800 chr2D 90.566 106 8 1 2681 2786 636385940 636386043 8.080000e-29 139.0
46 TraesCS4B01G046800 chr6A 85.981 107 11 4 5628 5732 559133964 559133860 1.760000e-20 111.0
47 TraesCS4B01G046800 chr1A 83.486 109 16 2 5621 5728 474150945 474151052 3.810000e-17 100.0
48 TraesCS4B01G046800 chr5A 91.803 61 5 0 2989 3049 69318092 69318032 1.070000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G046800 chr4B 34026359 34032335 5976 False 11038.0 11038 100.000 1 5977 1 chr4B.!!$F1 5976
1 TraesCS4B01G046800 chr4A 579858843 579864581 5738 True 1479.2 3904 89.122 1 5977 5 chr4A.!!$R1 5976
2 TraesCS4B01G046800 chr4A 687394460 687395255 795 False 614.0 614 80.958 1370 2192 1 chr4A.!!$F2 822
3 TraesCS4B01G046800 chr4D 22019141 22026800 7659 False 1642.4 3415 92.913 1 5977 5 chr4D.!!$F1 5976
4 TraesCS4B01G046800 chr6D 66626487 66627369 882 True 730.0 730 81.857 1319 2233 1 chr6D.!!$R2 914
5 TraesCS4B01G046800 chr6D 66261492 66262373 881 True 717.0 717 81.641 1319 2233 1 chr6D.!!$R1 914
6 TraesCS4B01G046800 chr5B 649866343 649867214 871 False 634.0 634 80.174 1328 2233 1 chr5B.!!$F4 905
7 TraesCS4B01G046800 chr1D 470455552 470456203 651 False 525.0 525 81.548 1574 2233 1 chr1D.!!$F2 659
8 TraesCS4B01G046800 chr7A 63313435 63314085 650 True 490.0 490 80.626 1574 2233 1 chr7A.!!$R2 659

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
682 712 0.248743 CGACGCTACCCGCTTGATTA 60.249 55.0 0.00 0.00 41.76 1.75 F
1749 3728 0.101759 GCACCGCTACCTAATCGTGA 59.898 55.0 0.00 0.00 0.00 4.35 F
1978 3957 0.603975 GCCTCACCAGTCACCACTTC 60.604 60.0 0.00 0.00 0.00 3.01 F
3087 5136 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.0 5.23 0.00 44.66 2.17 F
3090 5139 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.00 44.66 2.12 F
4157 6222 0.033894 AACACGGGGAAAGTGGTGTT 60.034 50.0 2.82 2.82 45.74 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1978 3957 1.348064 TCCTGGTACTTCAGTGTGGG 58.652 55.0 0.00 0.00 33.14 4.61 R
3071 5120 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.0 13.64 4.95 46.06 4.20 R
3178 5227 0.033796 ATGTACTCCCTCCGTCCGAA 60.034 55.0 0.00 0.00 0.00 4.30 R
4583 6648 0.036294 AGGTTCTTGGGAAGTAGCGC 60.036 55.0 0.00 0.00 32.46 5.92 R
4626 6691 1.636769 GGTTCCCCCTGGACATCTCC 61.637 65.0 0.00 0.00 41.57 3.71 R
5046 7116 1.777941 AAGATCCTACGGGACCACTC 58.222 55.0 0.00 0.00 45.43 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.527533 TGTTCACGCAGATTATACCCAC 58.472 45.455 0.00 0.00 0.00 4.61
38 39 4.141711 ACGCAGATTATACCCACAGTTGAT 60.142 41.667 0.00 0.00 0.00 2.57
56 57 5.529060 AGTTGATCTGACCTGTTTTTCACTC 59.471 40.000 0.00 0.00 0.00 3.51
158 159 1.057285 CATTCTGACAACGACGTACGC 59.943 52.381 16.72 7.41 46.94 4.42
175 176 4.101448 CCTGCCTGGAGTTCCCCG 62.101 72.222 0.00 0.00 38.35 5.73
266 267 6.508777 GGTTTAGATGGTAGACAGCTTAGAG 58.491 44.000 0.00 0.00 45.07 2.43
279 280 3.924144 AGCTTAGAGTCTGTTGCTGAAG 58.076 45.455 13.19 4.42 0.00 3.02
363 364 2.266554 CAAGGATTCTGCGTCTCTCAC 58.733 52.381 0.00 0.00 0.00 3.51
375 376 2.736978 GTCTCTCACATGTAGCGGATG 58.263 52.381 0.00 0.00 0.00 3.51
376 377 1.683385 TCTCTCACATGTAGCGGATGG 59.317 52.381 0.00 0.00 0.00 3.51
377 378 1.683385 CTCTCACATGTAGCGGATGGA 59.317 52.381 0.00 0.00 0.00 3.41
378 379 2.298446 CTCTCACATGTAGCGGATGGAT 59.702 50.000 0.00 0.00 0.00 3.41
464 465 5.586243 GTGCTGTAGAATCTATGCTTTTGGA 59.414 40.000 15.34 0.00 0.00 3.53
482 483 3.765381 TGGAATCATTGGTGCTTCTTCA 58.235 40.909 0.00 0.00 32.46 3.02
585 598 2.749621 GTGGCCAAAGATGTCGAAGATT 59.250 45.455 7.24 0.00 40.67 2.40
586 599 3.191371 GTGGCCAAAGATGTCGAAGATTT 59.809 43.478 7.24 0.00 40.67 2.17
643 673 8.184848 TCAACATAATTCTTCTAGAGAGACACG 58.815 37.037 0.00 0.00 35.37 4.49
667 697 1.227263 CTCAACCCCTATGCCGACG 60.227 63.158 0.00 0.00 0.00 5.12
682 712 0.248743 CGACGCTACCCGCTTGATTA 60.249 55.000 0.00 0.00 41.76 1.75
691 721 3.535561 ACCCGCTTGATTATCACAAGAG 58.464 45.455 11.08 7.87 44.92 2.85
694 724 4.272018 CCCGCTTGATTATCACAAGAGAAG 59.728 45.833 11.08 0.00 44.92 2.85
804 2731 7.596248 CCTGTTACAAGTTGAAATCAGAAATGG 59.404 37.037 10.54 0.00 0.00 3.16
879 2808 0.250424 GCACTTGCTGGGCCAAAAAT 60.250 50.000 8.04 0.00 39.71 1.82
898 2827 9.573133 CCAAAAATGATGTAATAGTCCAAGTTC 57.427 33.333 0.00 0.00 0.00 3.01
922 2851 4.486503 GGCCTGGCAGCTCCTGAG 62.487 72.222 22.05 0.00 35.98 3.35
924 2853 4.486503 CCTGGCAGCTCCTGAGGC 62.487 72.222 9.56 0.00 35.98 4.70
925 2854 3.400928 CTGGCAGCTCCTGAGGCT 61.401 66.667 0.00 0.00 41.07 4.58
926 2855 2.039462 TGGCAGCTCCTGAGGCTA 59.961 61.111 0.00 0.00 38.03 3.93
927 2856 2.308968 CTGGCAGCTCCTGAGGCTAC 62.309 65.000 0.00 0.00 38.03 3.58
928 2857 2.063378 GGCAGCTCCTGAGGCTACT 61.063 63.158 0.00 0.00 38.03 2.57
929 2858 1.143620 GCAGCTCCTGAGGCTACTG 59.856 63.158 9.88 9.88 38.03 2.74
930 2859 1.821936 CAGCTCCTGAGGCTACTGG 59.178 63.158 0.00 0.00 38.03 4.00
933 2862 1.002274 CTCCTGAGGCTACTGGGGT 59.998 63.158 0.00 0.00 0.00 4.95
934 2863 1.001760 TCCTGAGGCTACTGGGGTC 59.998 63.158 0.00 0.00 0.00 4.46
935 2864 2.427245 CCTGAGGCTACTGGGGTCG 61.427 68.421 0.00 0.00 0.00 4.79
936 2865 2.363795 TGAGGCTACTGGGGTCGG 60.364 66.667 0.00 0.00 0.00 4.79
937 2866 3.851128 GAGGCTACTGGGGTCGGC 61.851 72.222 0.00 0.00 34.66 5.54
949 2878 2.981350 GTCGGCGCCCCTCAAAAA 60.981 61.111 23.46 0.00 0.00 1.94
1267 3196 4.101448 GGGTGGCGCTGATGGAGT 62.101 66.667 7.64 0.00 0.00 3.85
1418 3347 2.093235 GCTGAGCCTGGAAGAATACTGT 60.093 50.000 0.00 0.00 34.07 3.55
1473 3408 1.443702 TGTCTCGATGCCGTTGTCG 60.444 57.895 0.00 0.00 39.11 4.35
1522 3457 2.991190 GCCAGATGTTTGCTGAAATGTG 59.009 45.455 0.00 0.00 35.39 3.21
1523 3458 2.991190 CCAGATGTTTGCTGAAATGTGC 59.009 45.455 0.00 0.00 35.39 4.57
1524 3459 3.305813 CCAGATGTTTGCTGAAATGTGCT 60.306 43.478 0.00 0.00 35.39 4.40
1525 3460 3.673338 CAGATGTTTGCTGAAATGTGCTG 59.327 43.478 0.00 0.00 35.39 4.41
1526 3461 3.319972 AGATGTTTGCTGAAATGTGCTGT 59.680 39.130 0.00 0.00 0.00 4.40
1587 3522 3.455469 GATTGCAGGCAGGGTGGC 61.455 66.667 0.00 0.00 44.10 5.01
1745 3724 1.269831 CCAGAGCACCGCTACCTAATC 60.270 57.143 0.00 0.00 39.88 1.75
1746 3725 0.669077 AGAGCACCGCTACCTAATCG 59.331 55.000 0.00 0.00 39.88 3.34
1747 3726 0.384669 GAGCACCGCTACCTAATCGT 59.615 55.000 0.00 0.00 39.88 3.73
1748 3727 0.102481 AGCACCGCTACCTAATCGTG 59.898 55.000 0.00 0.00 36.99 4.35
1749 3728 0.101759 GCACCGCTACCTAATCGTGA 59.898 55.000 0.00 0.00 0.00 4.35
1750 3729 1.836383 CACCGCTACCTAATCGTGAC 58.164 55.000 0.00 0.00 0.00 3.67
1751 3730 1.404391 CACCGCTACCTAATCGTGACT 59.596 52.381 0.00 0.00 0.00 3.41
1752 3731 2.097825 ACCGCTACCTAATCGTGACTT 58.902 47.619 0.00 0.00 0.00 3.01
1753 3732 2.494870 ACCGCTACCTAATCGTGACTTT 59.505 45.455 0.00 0.00 0.00 2.66
1754 3733 3.056322 ACCGCTACCTAATCGTGACTTTT 60.056 43.478 0.00 0.00 0.00 2.27
1755 3734 3.930848 CCGCTACCTAATCGTGACTTTTT 59.069 43.478 0.00 0.00 0.00 1.94
1756 3735 4.201685 CCGCTACCTAATCGTGACTTTTTG 60.202 45.833 0.00 0.00 0.00 2.44
1757 3736 4.201685 CGCTACCTAATCGTGACTTTTTGG 60.202 45.833 0.00 0.00 0.00 3.28
1758 3737 4.094442 GCTACCTAATCGTGACTTTTTGGG 59.906 45.833 0.00 0.00 0.00 4.12
1759 3738 3.418047 ACCTAATCGTGACTTTTTGGGG 58.582 45.455 0.00 0.00 0.00 4.96
1760 3739 3.073356 ACCTAATCGTGACTTTTTGGGGA 59.927 43.478 0.00 0.00 0.00 4.81
1761 3740 4.263771 ACCTAATCGTGACTTTTTGGGGAT 60.264 41.667 0.00 0.00 0.00 3.85
1762 3741 5.045432 ACCTAATCGTGACTTTTTGGGGATA 60.045 40.000 0.00 0.00 0.00 2.59
1763 3742 5.527582 CCTAATCGTGACTTTTTGGGGATAG 59.472 44.000 0.00 0.00 0.00 2.08
1764 3743 4.569719 ATCGTGACTTTTTGGGGATAGT 57.430 40.909 0.00 0.00 0.00 2.12
1765 3744 3.934068 TCGTGACTTTTTGGGGATAGTC 58.066 45.455 0.00 0.00 37.97 2.59
1766 3745 3.325425 TCGTGACTTTTTGGGGATAGTCA 59.675 43.478 0.00 0.00 43.30 3.41
1767 3746 3.684788 CGTGACTTTTTGGGGATAGTCAG 59.315 47.826 0.00 0.00 45.34 3.51
1768 3747 4.652822 GTGACTTTTTGGGGATAGTCAGT 58.347 43.478 0.00 0.00 45.34 3.41
1769 3748 4.455877 GTGACTTTTTGGGGATAGTCAGTG 59.544 45.833 0.00 0.00 45.34 3.66
1770 3749 4.104102 TGACTTTTTGGGGATAGTCAGTGT 59.896 41.667 0.00 0.00 41.34 3.55
1771 3750 5.308497 TGACTTTTTGGGGATAGTCAGTGTA 59.692 40.000 0.00 0.00 41.34 2.90
1772 3751 6.183361 TGACTTTTTGGGGATAGTCAGTGTAA 60.183 38.462 0.00 0.00 41.34 2.41
1773 3752 6.607019 ACTTTTTGGGGATAGTCAGTGTAAA 58.393 36.000 0.00 0.00 0.00 2.01
1774 3753 6.489022 ACTTTTTGGGGATAGTCAGTGTAAAC 59.511 38.462 0.00 0.00 0.00 2.01
1775 3754 5.836024 TTTGGGGATAGTCAGTGTAAACT 57.164 39.130 0.00 0.00 0.00 2.66
1776 3755 6.938698 TTTGGGGATAGTCAGTGTAAACTA 57.061 37.500 0.00 0.00 32.82 2.24
1777 3756 5.927281 TGGGGATAGTCAGTGTAAACTAC 57.073 43.478 0.00 0.00 31.15 2.73
1778 3757 5.586877 TGGGGATAGTCAGTGTAAACTACT 58.413 41.667 0.00 0.00 31.15 2.57
1779 3758 6.734532 TGGGGATAGTCAGTGTAAACTACTA 58.265 40.000 5.42 5.42 31.15 1.82
1780 3759 7.359849 TGGGGATAGTCAGTGTAAACTACTAT 58.640 38.462 11.77 11.77 36.37 2.12
1791 3770 8.495949 CAGTGTAAACTACTATGGTTGTTTGAG 58.504 37.037 24.43 10.77 45.52 3.02
1792 3771 7.172703 AGTGTAAACTACTATGGTTGTTTGAGC 59.827 37.037 24.43 16.75 45.52 4.26
1877 3856 0.883833 CAGGGTGCTCAACATGTTCC 59.116 55.000 8.48 6.41 0.00 3.62
1978 3957 0.603975 GCCTCACCAGTCACCACTTC 60.604 60.000 0.00 0.00 0.00 3.01
2001 3996 1.279271 ACACTGAAGTACCAGGATGCC 59.721 52.381 0.00 0.00 38.44 4.40
2141 4142 6.679327 AAGTTATTAATTCTGGGAAGCGAC 57.321 37.500 0.00 0.00 0.00 5.19
2177 4178 4.285863 AGGACTTGATGAAGGAGAGGTAG 58.714 47.826 0.00 0.00 32.95 3.18
2262 4263 8.472007 TCAGTTTTGAACTTACCCATTTGTAT 57.528 30.769 0.00 0.00 40.46 2.29
2323 4324 9.974980 TTTTCTTAACCAATAGATTCAAACACC 57.025 29.630 0.00 0.00 0.00 4.16
2415 4418 7.660112 TCAGCAAAGTTCATGATGTTTTGTAT 58.340 30.769 19.56 11.50 35.74 2.29
2537 4540 5.306394 AGTAGTTAACAGTTTGCCCTCTTC 58.694 41.667 8.61 0.00 0.00 2.87
2562 4565 1.403323 GCCTTGCCTTACTCAATCAGC 59.597 52.381 0.00 0.00 0.00 4.26
2632 4635 8.641499 TTCAACCTAAAAGCTAAAACATGTTG 57.359 30.769 12.82 0.48 0.00 3.33
2655 4658 7.880160 TGTGCTGCAAACTAGGAAATATTAT 57.120 32.000 2.77 0.00 0.00 1.28
2699 4702 5.479124 TTTTGGTAACTACTCCCTCTGTC 57.521 43.478 0.00 0.00 37.61 3.51
2700 4703 3.097342 TGGTAACTACTCCCTCTGTCC 57.903 52.381 0.00 0.00 37.61 4.02
2701 4704 2.292061 TGGTAACTACTCCCTCTGTCCC 60.292 54.545 0.00 0.00 37.61 4.46
2746 4765 6.199043 CACTAGAGTGTAGTGTCAAAAACG 57.801 41.667 17.26 0.00 40.96 3.60
2747 4766 4.743644 ACTAGAGTGTAGTGTCAAAAACGC 59.256 41.667 0.00 0.00 38.74 4.84
2748 4767 7.442048 CACTAGAGTGTAGTGTCAAAAACGCT 61.442 42.308 17.26 0.00 43.04 5.07
2749 4768 3.802685 AGAGTGTAGTGTCAAAAACGCTC 59.197 43.478 12.70 12.70 45.69 5.03
2750 4769 3.793559 AGTGTAGTGTCAAAAACGCTCT 58.206 40.909 0.00 0.00 45.69 4.09
2751 4770 4.189231 AGTGTAGTGTCAAAAACGCTCTT 58.811 39.130 0.00 0.00 45.69 2.85
2752 4771 5.353938 AGTGTAGTGTCAAAAACGCTCTTA 58.646 37.500 0.00 0.00 45.69 2.10
2753 4772 5.989777 AGTGTAGTGTCAAAAACGCTCTTAT 59.010 36.000 0.00 0.00 45.69 1.73
2754 4773 7.149973 AGTGTAGTGTCAAAAACGCTCTTATA 58.850 34.615 0.00 0.00 45.69 0.98
2755 4774 7.817962 AGTGTAGTGTCAAAAACGCTCTTATAT 59.182 33.333 0.00 0.00 45.69 0.86
2756 4775 8.440833 GTGTAGTGTCAAAAACGCTCTTATATT 58.559 33.333 0.00 0.00 45.69 1.28
2757 4776 9.642327 TGTAGTGTCAAAAACGCTCTTATATTA 57.358 29.630 0.00 0.00 45.69 0.98
2760 4779 9.378551 AGTGTCAAAAACGCTCTTATATTATGA 57.621 29.630 0.00 0.00 45.69 2.15
2761 4780 9.638300 GTGTCAAAAACGCTCTTATATTATGAG 57.362 33.333 0.00 0.00 35.42 2.90
2933 4982 5.662674 AAGTGCTTAGAGAAATAGACCGT 57.337 39.130 0.00 0.00 0.00 4.83
2987 5036 5.893255 AGATGGCAGATGTTTAATTAGGCAA 59.107 36.000 0.00 0.00 33.78 4.52
3071 5120 1.480954 CCAGGCACCTTACATCGTACT 59.519 52.381 0.00 0.00 0.00 2.73
3072 5121 2.481449 CCAGGCACCTTACATCGTACTC 60.481 54.545 0.00 0.00 0.00 2.59
3073 5122 1.755380 AGGCACCTTACATCGTACTCC 59.245 52.381 0.00 0.00 0.00 3.85
3074 5123 1.202498 GGCACCTTACATCGTACTCCC 60.202 57.143 0.00 0.00 0.00 4.30
3075 5124 1.755380 GCACCTTACATCGTACTCCCT 59.245 52.381 0.00 0.00 0.00 4.20
3076 5125 2.223758 GCACCTTACATCGTACTCCCTC 60.224 54.545 0.00 0.00 0.00 4.30
3077 5126 2.361438 CACCTTACATCGTACTCCCTCC 59.639 54.545 0.00 0.00 0.00 4.30
3078 5127 1.607628 CCTTACATCGTACTCCCTCCG 59.392 57.143 0.00 0.00 0.00 4.63
3079 5128 2.295885 CTTACATCGTACTCCCTCCGT 58.704 52.381 0.00 0.00 0.00 4.69
3080 5129 1.959042 TACATCGTACTCCCTCCGTC 58.041 55.000 0.00 0.00 0.00 4.79
3081 5130 0.750911 ACATCGTACTCCCTCCGTCC 60.751 60.000 0.00 0.00 0.00 4.79
3082 5131 1.525535 ATCGTACTCCCTCCGTCCG 60.526 63.158 0.00 0.00 0.00 4.79
3083 5132 2.955022 ATCGTACTCCCTCCGTCCGG 62.955 65.000 0.00 0.00 0.00 5.14
3084 5133 2.273449 GTACTCCCTCCGTCCGGA 59.727 66.667 0.00 0.00 42.90 5.14
3085 5134 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
3086 5135 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
3087 5136 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3088 5137 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3089 5138 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3090 5139 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3091 5140 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3092 5141 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3093 5142 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3094 5143 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3095 5144 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
3096 5145 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
3097 5146 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
3098 5147 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
3099 5148 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
3100 5149 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
3101 5150 5.628134 GTCCGGAAATACTTGTCATCAAAC 58.372 41.667 5.23 0.00 32.87 2.93
3102 5151 5.411669 GTCCGGAAATACTTGTCATCAAACT 59.588 40.000 5.23 0.00 32.87 2.66
3103 5152 6.592607 GTCCGGAAATACTTGTCATCAAACTA 59.407 38.462 5.23 0.00 32.87 2.24
3104 5153 6.816640 TCCGGAAATACTTGTCATCAAACTAG 59.183 38.462 0.00 0.00 32.87 2.57
3105 5154 6.816640 CCGGAAATACTTGTCATCAAACTAGA 59.183 38.462 0.00 0.00 32.87 2.43
3106 5155 7.495934 CCGGAAATACTTGTCATCAAACTAGAT 59.504 37.037 0.00 0.00 32.87 1.98
3107 5156 9.529325 CGGAAATACTTGTCATCAAACTAGATA 57.471 33.333 0.00 0.00 32.87 1.98
3113 5162 8.567285 ACTTGTCATCAAACTAGATAAAAGGG 57.433 34.615 0.00 0.00 32.87 3.95
3114 5163 7.611855 ACTTGTCATCAAACTAGATAAAAGGGG 59.388 37.037 0.00 0.00 32.87 4.79
3115 5164 7.265599 TGTCATCAAACTAGATAAAAGGGGA 57.734 36.000 0.00 0.00 0.00 4.81
3116 5165 7.872138 TGTCATCAAACTAGATAAAAGGGGAT 58.128 34.615 0.00 0.00 0.00 3.85
3117 5166 7.775093 TGTCATCAAACTAGATAAAAGGGGATG 59.225 37.037 0.00 0.00 0.00 3.51
3118 5167 7.775561 GTCATCAAACTAGATAAAAGGGGATGT 59.224 37.037 0.00 0.00 32.47 3.06
3119 5168 8.998814 TCATCAAACTAGATAAAAGGGGATGTA 58.001 33.333 0.00 0.00 32.47 2.29
3120 5169 9.799106 CATCAAACTAGATAAAAGGGGATGTAT 57.201 33.333 0.00 0.00 0.00 2.29
3122 5171 9.225682 TCAAACTAGATAAAAGGGGATGTATCT 57.774 33.333 0.00 0.00 37.18 1.98
3128 5177 8.980832 AGATAAAAGGGGATGTATCTAGATGT 57.019 34.615 15.79 1.25 32.73 3.06
3136 5185 9.845214 AGGGGATGTATCTAGATGTATTTTAGT 57.155 33.333 15.79 0.00 0.00 2.24
3180 5229 9.859427 TCATCCATTTTGATGACAAGTATTTTC 57.141 29.630 0.00 0.00 44.65 2.29
3181 5230 8.800972 CATCCATTTTGATGACAAGTATTTTCG 58.199 33.333 0.00 0.00 43.94 3.46
3182 5231 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
3183 5232 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
3184 5233 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
3185 5234 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
3186 5235 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
3187 5236 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
3188 5237 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
3189 5238 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
3190 5239 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
3191 5240 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
3192 5241 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
3193 5242 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
3194 5243 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
3195 5244 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
3294 5343 6.366061 GTGACAATTTGGATTGCTTTAAGTCC 59.634 38.462 0.78 0.00 45.25 3.85
3295 5344 6.041409 TGACAATTTGGATTGCTTTAAGTCCA 59.959 34.615 0.78 0.00 45.25 4.02
3303 5352 6.318648 TGGATTGCTTTAAGTCCATGACATAC 59.681 38.462 0.00 0.00 35.91 2.39
3408 5457 3.550437 AGTTGTGAGAGGGCATATGTC 57.450 47.619 4.29 0.58 0.00 3.06
3612 5661 1.197721 ACTGATAAAGCTGCACAACGC 59.802 47.619 1.02 0.00 42.89 4.84
3639 5688 2.789409 AAGGTCAATCTGCTGTACCC 57.211 50.000 0.00 0.00 0.00 3.69
4045 6103 2.476821 ACAAACCGTTTACTCAGTCCG 58.523 47.619 0.00 0.00 0.00 4.79
4048 6106 1.447314 CCGTTTACTCAGTCCGGGC 60.447 63.158 0.00 0.00 35.11 6.13
4157 6222 0.033894 AACACGGGGAAAGTGGTGTT 60.034 50.000 2.82 2.82 45.74 3.32
4164 6229 3.151554 GGGGAAAGTGGTGTTAACGATT 58.848 45.455 0.26 0.00 0.00 3.34
4168 6233 4.037089 GGAAAGTGGTGTTAACGATTTGGT 59.963 41.667 0.26 0.00 0.00 3.67
4335 6400 2.812011 AGCATTAAACGACCAAGACACC 59.188 45.455 0.00 0.00 0.00 4.16
4350 6415 2.358247 ACCATCGAACCACACCGC 60.358 61.111 0.00 0.00 0.00 5.68
4437 6502 2.193306 AGCGACAACTTGTGCAAAAG 57.807 45.000 15.38 15.38 30.52 2.27
4443 6508 1.410153 CAACTTGTGCAAAAGAGGGCT 59.590 47.619 23.64 0.00 0.00 5.19
4583 6648 2.124570 CATTGTCGGGGGCAGGAG 60.125 66.667 0.00 0.00 0.00 3.69
4584 6649 4.115199 ATTGTCGGGGGCAGGAGC 62.115 66.667 0.00 0.00 41.10 4.70
4603 6668 1.610886 GCGCTACTTCCCAAGAACCTT 60.611 52.381 0.00 0.00 0.00 3.50
4626 6691 3.010584 TGGAGAGGGAAAAATGGAAGGAG 59.989 47.826 0.00 0.00 0.00 3.69
4684 6749 3.002759 GGCATCAGAAGAAAGTAATCGCC 59.997 47.826 0.00 0.00 0.00 5.54
4743 6808 2.394912 GAGGACGACGACGACGAG 59.605 66.667 25.15 9.88 42.66 4.18
4790 6855 6.346678 GCGAACAGTAGTAGAAACCTGAAAAG 60.347 42.308 0.00 0.00 0.00 2.27
4828 6893 4.519350 TGTGTAAATGCCGGTAATTTGTGA 59.481 37.500 20.88 5.09 0.00 3.58
4855 6920 8.931385 ATTTCACATGTAAAATCTACCATTGC 57.069 30.769 0.75 0.00 0.00 3.56
4884 6949 7.721399 AGAGGTACAAAATTCAGTGAAGACATT 59.279 33.333 11.91 0.00 0.00 2.71
4933 7002 2.826428 CCGTGAGAACATGGTATCCAG 58.174 52.381 2.30 0.00 45.30 3.86
4944 7013 2.492025 TGGTATCCAGGGAGCAGAAAT 58.508 47.619 0.00 0.00 0.00 2.17
4963 7032 7.221452 GCAGAAATTTTATGGCAGACTACAATG 59.779 37.037 5.95 0.00 0.00 2.82
4964 7033 8.461222 CAGAAATTTTATGGCAGACTACAATGA 58.539 33.333 0.00 0.00 0.00 2.57
5004 7074 3.784763 AGGTCATCCATCAAAGATCTGGT 59.215 43.478 0.00 0.00 35.89 4.00
5035 7105 3.500558 TCTTGATTCTCTCTGTGCTCG 57.499 47.619 0.00 0.00 0.00 5.03
5044 7114 1.135046 CTCTGTGCTCGTCACTTGTG 58.865 55.000 10.76 0.00 45.81 3.33
5046 7116 2.150809 CTGTGCTCGTCACTTGTGCG 62.151 60.000 10.76 9.89 45.81 5.34
5102 7172 7.355332 ACGTATCCGATTAAAAATTATCCGG 57.645 36.000 0.00 0.00 37.88 5.14
5121 7191 2.348872 CGGAATCATGAGGATTTTCGCG 60.349 50.000 0.00 0.00 46.17 5.87
5215 7286 6.465439 TTGGAGAAGATACGACATACACAT 57.535 37.500 0.00 0.00 0.00 3.21
5218 7289 6.544564 TGGAGAAGATACGACATACACATGTA 59.455 38.462 0.00 0.00 45.58 2.29
5220 7291 6.736123 AGAAGATACGACATACACATGTACC 58.264 40.000 0.00 0.00 45.58 3.34
5221 7292 6.546403 AGAAGATACGACATACACATGTACCT 59.454 38.462 0.00 0.00 45.58 3.08
5222 7293 7.718314 AGAAGATACGACATACACATGTACCTA 59.282 37.037 0.00 0.00 45.58 3.08
5223 7294 7.997773 AGATACGACATACACATGTACCTAT 57.002 36.000 0.00 0.00 45.58 2.57
5224 7295 8.405418 AGATACGACATACACATGTACCTATT 57.595 34.615 0.00 0.00 45.58 1.73
5225 7296 8.857098 AGATACGACATACACATGTACCTATTT 58.143 33.333 0.00 0.00 45.58 1.40
5226 7297 9.472361 GATACGACATACACATGTACCTATTTT 57.528 33.333 0.00 0.00 45.58 1.82
5229 7300 9.826574 ACGACATACACATGTACCTATTTTATT 57.173 29.630 0.00 0.00 45.58 1.40
5259 7330 6.266168 TGTTTGACGAAATGAAATGCCTAT 57.734 33.333 0.00 0.00 0.00 2.57
5261 7332 7.821652 TGTTTGACGAAATGAAATGCCTATAA 58.178 30.769 0.00 0.00 0.00 0.98
5262 7333 8.465999 TGTTTGACGAAATGAAATGCCTATAAT 58.534 29.630 0.00 0.00 0.00 1.28
5293 7367 6.177610 TCTATCGCCCTTGTTTCTTTAATGT 58.822 36.000 0.00 0.00 0.00 2.71
5297 7371 5.047188 CGCCCTTGTTTCTTTAATGTTTGT 58.953 37.500 0.00 0.00 0.00 2.83
5317 7391 7.118971 TGTTTGTTTCAAGATTTGGGTGAAAAG 59.881 33.333 0.00 0.00 41.53 2.27
5342 7416 3.261897 GGGAGAGGATGAGTGACTTTTGA 59.738 47.826 0.00 0.00 0.00 2.69
5348 7422 2.550830 TGAGTGACTTTTGAGGAGGC 57.449 50.000 0.00 0.00 0.00 4.70
5367 7441 5.532779 GGAGGCTATCCTTTAGTTTCCATTG 59.467 44.000 0.00 0.00 44.46 2.82
5385 7461 4.562394 CCATTGCTATTGGTTGTTTAAGCG 59.438 41.667 0.00 0.00 37.11 4.68
5475 7551 3.077359 GGCTAGCTAATTAGGGCATGTG 58.923 50.000 15.72 0.00 0.00 3.21
5476 7552 2.485814 GCTAGCTAATTAGGGCATGTGC 59.514 50.000 14.28 0.00 41.14 4.57
5514 7590 5.543507 AGTCTAATCTTAGTCCTGCCATG 57.456 43.478 0.00 0.00 32.61 3.66
5530 7606 5.474578 TGCCATGTAATCTAGAGATGACC 57.525 43.478 0.00 0.00 35.46 4.02
5563 7641 9.081997 GTACAATGAGTTGTCTCTTCATCTTAG 57.918 37.037 0.00 0.00 45.14 2.18
5574 7655 9.616156 TGTCTCTTCATCTTAGTAGTAACTAGG 57.384 37.037 0.00 0.00 39.36 3.02
5612 7693 7.397221 TGTGAATGTGAGGAGAGATTTGTTAT 58.603 34.615 0.00 0.00 0.00 1.89
5777 7867 7.379529 GGCAACATTACACATCATAATAACTGC 59.620 37.037 0.00 0.00 0.00 4.40
5789 7879 7.838079 TCATAATAACTGCATATGGGCTTTT 57.162 32.000 4.56 0.00 34.04 2.27
5791 7881 2.678471 AACTGCATATGGGCTTTTGC 57.322 45.000 4.56 0.00 46.64 3.68
5821 7911 7.976135 TTTTCTCTCAAAAGAATCTCTCAGG 57.024 36.000 0.00 0.00 35.30 3.86
5933 8023 7.438459 AGCAACTATTGTTATAACTCGCCTAAG 59.562 37.037 16.33 7.02 34.60 2.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 5.297776 AGTGAAAAACAGGTCAGATCAACTG 59.702 40.000 0.00 0.00 46.97 3.16
38 39 3.924114 TGGAGTGAAAAACAGGTCAGA 57.076 42.857 0.00 0.00 0.00 3.27
56 57 1.063006 CTGTTGCGATGCCGAATGG 59.937 57.895 0.00 0.00 38.22 3.16
103 104 0.326264 GCTGGTCCATGAGAAGGTGT 59.674 55.000 0.00 0.00 0.00 4.16
158 159 4.101448 CGGGGAACTCCAGGCAGG 62.101 72.222 0.00 0.00 37.91 4.85
261 262 5.698089 CACATTCTTCAGCAACAGACTCTAA 59.302 40.000 0.00 0.00 0.00 2.10
266 267 3.141398 TCCACATTCTTCAGCAACAGAC 58.859 45.455 0.00 0.00 0.00 3.51
363 364 1.001746 AGCTCATCCATCCGCTACATG 59.998 52.381 0.00 0.00 0.00 3.21
396 397 9.562583 GTTTTACAAACAACAGAGAACATACAA 57.437 29.630 0.00 0.00 0.00 2.41
464 465 4.401022 TGACTGAAGAAGCACCAATGATT 58.599 39.130 0.00 0.00 37.08 2.57
482 483 8.621286 ACGACATTCACTTTTATTTTCTTGACT 58.379 29.630 0.00 0.00 0.00 3.41
561 574 0.389817 TCGACATCTTTGGCCACTCG 60.390 55.000 3.88 5.35 0.00 4.18
601 631 7.843490 TTATGTTGAGTTCAATAGTACCAGC 57.157 36.000 0.00 0.00 38.24 4.85
643 673 1.134371 GGCATAGGGGTTGAGTGAGAC 60.134 57.143 0.00 0.00 0.00 3.36
654 684 2.338984 GTAGCGTCGGCATAGGGG 59.661 66.667 0.00 0.00 43.41 4.79
709 739 0.713883 GTTATCCGAGTGCACACGTG 59.286 55.000 29.97 22.17 36.20 4.49
865 2794 1.350071 ACATCATTTTTGGCCCAGCA 58.650 45.000 0.00 0.00 0.00 4.41
879 2808 4.682320 GCCCGAACTTGGACTATTACATCA 60.682 45.833 0.00 0.00 0.00 3.07
917 2846 2.427245 CGACCCCAGTAGCCTCAGG 61.427 68.421 0.00 0.00 0.00 3.86
951 2880 1.170442 CCGCCGAACCCAGTATTTTT 58.830 50.000 0.00 0.00 0.00 1.94
952 2881 0.678684 CCCGCCGAACCCAGTATTTT 60.679 55.000 0.00 0.00 0.00 1.82
953 2882 1.078001 CCCGCCGAACCCAGTATTT 60.078 57.895 0.00 0.00 0.00 1.40
954 2883 2.587889 CCCGCCGAACCCAGTATT 59.412 61.111 0.00 0.00 0.00 1.89
955 2884 3.476419 CCCCGCCGAACCCAGTAT 61.476 66.667 0.00 0.00 0.00 2.12
969 2898 2.570284 CCCGGTTTCAGTTTGCCCC 61.570 63.158 0.00 0.00 0.00 5.80
1150 3079 3.643595 CTTGCCATTGCTCCCGGGA 62.644 63.158 25.06 25.06 38.71 5.14
1404 3333 5.760253 AGACACACAAACAGTATTCTTCCAG 59.240 40.000 0.00 0.00 0.00 3.86
1414 3343 3.118038 ACCCACATAGACACACAAACAGT 60.118 43.478 0.00 0.00 0.00 3.55
1418 3347 4.431416 AGAACCCACATAGACACACAAA 57.569 40.909 0.00 0.00 0.00 2.83
1473 3408 0.531753 AAACAATGGCGGCAAACACC 60.532 50.000 18.31 0.00 0.00 4.16
1478 3413 0.243365 CAGCTAAACAATGGCGGCAA 59.757 50.000 18.31 0.00 0.00 4.52
1481 3416 0.456653 GTGCAGCTAAACAATGGCGG 60.457 55.000 0.00 0.00 0.00 6.13
1524 3459 2.413963 AACGCAAACTGCTGGCACA 61.414 52.632 0.00 0.00 42.25 4.57
1525 3460 1.945662 CAACGCAAACTGCTGGCAC 60.946 57.895 0.00 0.00 42.25 5.01
1526 3461 2.412525 CAACGCAAACTGCTGGCA 59.587 55.556 0.00 0.00 42.25 4.92
1653 3595 6.663523 GGCATAGTTTAGGGGCATATAAACAT 59.336 38.462 15.97 8.29 41.97 2.71
1745 3724 3.670625 TGACTATCCCCAAAAAGTCACG 58.329 45.455 0.10 0.00 42.46 4.35
1746 3725 4.455877 CACTGACTATCCCCAAAAAGTCAC 59.544 45.833 0.10 0.00 42.46 3.67
1747 3726 4.104102 ACACTGACTATCCCCAAAAAGTCA 59.896 41.667 4.18 4.18 44.47 3.41
1748 3727 4.652822 ACACTGACTATCCCCAAAAAGTC 58.347 43.478 0.00 0.00 39.04 3.01
1749 3728 4.724279 ACACTGACTATCCCCAAAAAGT 57.276 40.909 0.00 0.00 0.00 2.66
1750 3729 6.715264 AGTTTACACTGACTATCCCCAAAAAG 59.285 38.462 0.00 0.00 0.00 2.27
1751 3730 6.607019 AGTTTACACTGACTATCCCCAAAAA 58.393 36.000 0.00 0.00 0.00 1.94
1752 3731 6.195600 AGTTTACACTGACTATCCCCAAAA 57.804 37.500 0.00 0.00 0.00 2.44
1753 3732 5.836024 AGTTTACACTGACTATCCCCAAA 57.164 39.130 0.00 0.00 0.00 3.28
1754 3733 6.021030 AGTAGTTTACACTGACTATCCCCAA 58.979 40.000 0.00 0.00 34.06 4.12
1755 3734 5.586877 AGTAGTTTACACTGACTATCCCCA 58.413 41.667 0.00 0.00 34.06 4.96
1756 3735 7.255871 CCATAGTAGTTTACACTGACTATCCCC 60.256 44.444 0.00 0.00 32.81 4.81
1757 3736 7.287235 ACCATAGTAGTTTACACTGACTATCCC 59.713 40.741 0.00 0.00 32.81 3.85
1758 3737 8.235359 ACCATAGTAGTTTACACTGACTATCC 57.765 38.462 0.00 0.00 32.81 2.59
1759 3738 9.517609 CAACCATAGTAGTTTACACTGACTATC 57.482 37.037 0.00 0.00 32.81 2.08
1760 3739 9.032624 ACAACCATAGTAGTTTACACTGACTAT 57.967 33.333 0.00 0.00 34.02 2.12
1761 3740 8.413309 ACAACCATAGTAGTTTACACTGACTA 57.587 34.615 0.00 0.00 34.06 2.59
1762 3741 7.299246 ACAACCATAGTAGTTTACACTGACT 57.701 36.000 0.00 0.00 34.06 3.41
1763 3742 7.958053 AACAACCATAGTAGTTTACACTGAC 57.042 36.000 0.00 0.00 34.06 3.51
1764 3743 8.205512 TCAAACAACCATAGTAGTTTACACTGA 58.794 33.333 0.00 0.00 33.30 3.41
1765 3744 8.373048 TCAAACAACCATAGTAGTTTACACTG 57.627 34.615 0.00 0.00 33.30 3.66
1766 3745 7.172703 GCTCAAACAACCATAGTAGTTTACACT 59.827 37.037 0.00 0.00 33.30 3.55
1767 3746 7.041644 TGCTCAAACAACCATAGTAGTTTACAC 60.042 37.037 0.00 0.00 33.30 2.90
1768 3747 6.993308 TGCTCAAACAACCATAGTAGTTTACA 59.007 34.615 0.00 0.00 33.30 2.41
1769 3748 7.429636 TGCTCAAACAACCATAGTAGTTTAC 57.570 36.000 0.00 0.00 33.30 2.01
1770 3749 7.717875 ACTTGCTCAAACAACCATAGTAGTTTA 59.282 33.333 0.00 0.00 33.30 2.01
1771 3750 6.546034 ACTTGCTCAAACAACCATAGTAGTTT 59.454 34.615 0.00 0.00 34.78 2.66
1772 3751 6.062095 ACTTGCTCAAACAACCATAGTAGTT 58.938 36.000 0.00 0.00 0.00 2.24
1773 3752 5.621193 ACTTGCTCAAACAACCATAGTAGT 58.379 37.500 0.00 0.00 0.00 2.73
1774 3753 6.204688 TCAACTTGCTCAAACAACCATAGTAG 59.795 38.462 0.00 0.00 0.00 2.57
1775 3754 6.058833 TCAACTTGCTCAAACAACCATAGTA 58.941 36.000 0.00 0.00 0.00 1.82
1776 3755 4.887071 TCAACTTGCTCAAACAACCATAGT 59.113 37.500 0.00 0.00 0.00 2.12
1777 3756 5.437289 TCAACTTGCTCAAACAACCATAG 57.563 39.130 0.00 0.00 0.00 2.23
1778 3757 4.261572 GCTCAACTTGCTCAAACAACCATA 60.262 41.667 0.00 0.00 0.00 2.74
1779 3758 3.491447 GCTCAACTTGCTCAAACAACCAT 60.491 43.478 0.00 0.00 0.00 3.55
1780 3759 2.159254 GCTCAACTTGCTCAAACAACCA 60.159 45.455 0.00 0.00 0.00 3.67
1877 3856 4.635223 TGACACATCTTTCTCCAGTTCTG 58.365 43.478 0.00 0.00 0.00 3.02
1893 3872 8.334263 TGAAATTGCTTATATTGACTGACACA 57.666 30.769 0.00 0.00 0.00 3.72
1946 3925 2.024414 GGTGAGGCCAATAATGACACC 58.976 52.381 5.01 7.49 39.20 4.16
1978 3957 1.348064 TCCTGGTACTTCAGTGTGGG 58.652 55.000 0.00 0.00 33.14 4.61
2001 3996 1.858458 CACAGGGATATGTAACGCACG 59.142 52.381 0.00 0.00 0.00 5.34
2149 4150 4.125703 CTCCTTCATCAAGTCCTACATGC 58.874 47.826 0.00 0.00 0.00 4.06
2177 4178 2.063266 CTGCACACATTTTCATGCACC 58.937 47.619 0.00 0.00 42.92 5.01
2262 4263 7.340743 TGGTTCAGTTTTTCTCCAGAACATTTA 59.659 33.333 0.00 0.00 37.64 1.40
2323 4324 7.841915 ATTTTCCTGTGTTTTAACAGTTTGG 57.158 32.000 3.85 0.00 45.08 3.28
2432 4435 9.490663 GCAGATTAAAATACACACTGTTACATC 57.509 33.333 0.00 0.00 0.00 3.06
2537 4540 4.883585 TGATTGAGTAAGGCAAGGCTAATG 59.116 41.667 0.00 0.00 0.00 1.90
2562 4565 3.325870 TGGTTTCTCAAGCTCATACACG 58.674 45.455 0.00 0.00 0.00 4.49
2632 4635 7.930217 TCATAATATTTCCTAGTTTGCAGCAC 58.070 34.615 0.00 0.00 0.00 4.40
2679 4682 3.438183 GGACAGAGGGAGTAGTTACCAA 58.562 50.000 0.00 0.00 0.00 3.67
2724 4743 4.743644 GCGTTTTTGACACTACACTCTAGT 59.256 41.667 0.00 0.00 0.00 2.57
2725 4744 4.982916 AGCGTTTTTGACACTACACTCTAG 59.017 41.667 0.00 0.00 0.00 2.43
2726 4745 4.940463 AGCGTTTTTGACACTACACTCTA 58.060 39.130 0.00 0.00 0.00 2.43
2727 4746 3.793559 AGCGTTTTTGACACTACACTCT 58.206 40.909 0.00 0.00 0.00 3.24
2728 4747 3.802685 AGAGCGTTTTTGACACTACACTC 59.197 43.478 0.00 0.00 0.00 3.51
2729 4748 3.793559 AGAGCGTTTTTGACACTACACT 58.206 40.909 0.00 0.00 0.00 3.55
2730 4749 4.531659 AAGAGCGTTTTTGACACTACAC 57.468 40.909 0.00 0.00 0.00 2.90
2731 4750 8.542497 AATATAAGAGCGTTTTTGACACTACA 57.458 30.769 0.00 0.00 0.00 2.74
2734 4753 9.378551 TCATAATATAAGAGCGTTTTTGACACT 57.621 29.630 0.00 0.00 0.00 3.55
2735 4754 9.638300 CTCATAATATAAGAGCGTTTTTGACAC 57.362 33.333 0.00 0.00 0.00 3.67
2736 4755 9.594478 TCTCATAATATAAGAGCGTTTTTGACA 57.406 29.630 0.00 0.00 0.00 3.58
2737 4756 9.851043 GTCTCATAATATAAGAGCGTTTTTGAC 57.149 33.333 0.00 0.00 0.00 3.18
2738 4757 8.752254 CGTCTCATAATATAAGAGCGTTTTTGA 58.248 33.333 0.00 0.00 0.00 2.69
2739 4758 8.004344 CCGTCTCATAATATAAGAGCGTTTTTG 58.996 37.037 0.00 0.00 31.69 2.44
2740 4759 7.924412 TCCGTCTCATAATATAAGAGCGTTTTT 59.076 33.333 0.00 0.00 31.69 1.94
2741 4760 7.431249 TCCGTCTCATAATATAAGAGCGTTTT 58.569 34.615 0.00 0.00 31.69 2.43
2742 4761 6.978338 TCCGTCTCATAATATAAGAGCGTTT 58.022 36.000 0.00 0.00 31.69 3.60
2743 4762 6.349445 CCTCCGTCTCATAATATAAGAGCGTT 60.349 42.308 0.00 0.00 31.69 4.84
2744 4763 5.124138 CCTCCGTCTCATAATATAAGAGCGT 59.876 44.000 0.00 0.00 31.69 5.07
2745 4764 5.449314 CCCTCCGTCTCATAATATAAGAGCG 60.449 48.000 0.00 0.00 0.00 5.03
2746 4765 5.652891 TCCCTCCGTCTCATAATATAAGAGC 59.347 44.000 0.00 0.00 0.00 4.09
2747 4766 6.887545 ACTCCCTCCGTCTCATAATATAAGAG 59.112 42.308 0.00 0.00 0.00 2.85
2748 4767 6.791371 ACTCCCTCCGTCTCATAATATAAGA 58.209 40.000 0.00 0.00 0.00 2.10
2749 4768 7.830201 AGTACTCCCTCCGTCTCATAATATAAG 59.170 40.741 0.00 0.00 0.00 1.73
2750 4769 7.696981 AGTACTCCCTCCGTCTCATAATATAA 58.303 38.462 0.00 0.00 0.00 0.98
2751 4770 7.268212 AGTACTCCCTCCGTCTCATAATATA 57.732 40.000 0.00 0.00 0.00 0.86
2752 4771 6.142259 AGTACTCCCTCCGTCTCATAATAT 57.858 41.667 0.00 0.00 0.00 1.28
2753 4772 5.579753 AGTACTCCCTCCGTCTCATAATA 57.420 43.478 0.00 0.00 0.00 0.98
2754 4773 4.456662 AGTACTCCCTCCGTCTCATAAT 57.543 45.455 0.00 0.00 0.00 1.28
2755 4774 3.947612 AGTACTCCCTCCGTCTCATAA 57.052 47.619 0.00 0.00 0.00 1.90
2756 4775 5.579753 AATAGTACTCCCTCCGTCTCATA 57.420 43.478 0.00 0.00 0.00 2.15
2757 4776 4.456662 AATAGTACTCCCTCCGTCTCAT 57.543 45.455 0.00 0.00 0.00 2.90
2758 4777 3.947612 AATAGTACTCCCTCCGTCTCA 57.052 47.619 0.00 0.00 0.00 3.27
2759 4778 5.591877 TGTTAAATAGTACTCCCTCCGTCTC 59.408 44.000 0.00 0.00 0.00 3.36
2760 4779 5.513233 TGTTAAATAGTACTCCCTCCGTCT 58.487 41.667 0.00 0.00 0.00 4.18
2761 4780 5.841957 TGTTAAATAGTACTCCCTCCGTC 57.158 43.478 0.00 0.00 0.00 4.79
2987 5036 2.370189 GTGCTTATCTCTATGGCAGGGT 59.630 50.000 0.00 0.00 33.47 4.34
3071 5120 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3072 5121 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3073 5122 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3074 5123 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
3075 5124 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
3076 5125 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
3077 5126 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
3078 5127 5.411669 AGTTTGATGACAAGTATTTCCGGAC 59.588 40.000 1.83 0.00 37.32 4.79
3079 5128 5.556915 AGTTTGATGACAAGTATTTCCGGA 58.443 37.500 0.00 0.00 37.32 5.14
3080 5129 5.880054 AGTTTGATGACAAGTATTTCCGG 57.120 39.130 0.00 0.00 37.32 5.14
3081 5130 7.827819 TCTAGTTTGATGACAAGTATTTCCG 57.172 36.000 0.00 0.00 37.32 4.30
3087 5136 9.667107 CCCTTTTATCTAGTTTGATGACAAGTA 57.333 33.333 0.00 0.00 37.32 2.24
3088 5137 7.611855 CCCCTTTTATCTAGTTTGATGACAAGT 59.388 37.037 0.00 0.00 37.32 3.16
3089 5138 7.829211 TCCCCTTTTATCTAGTTTGATGACAAG 59.171 37.037 0.00 0.00 37.32 3.16
3090 5139 7.695055 TCCCCTTTTATCTAGTTTGATGACAA 58.305 34.615 0.00 0.00 0.00 3.18
3091 5140 7.265599 TCCCCTTTTATCTAGTTTGATGACA 57.734 36.000 0.00 0.00 0.00 3.58
3092 5141 7.775561 ACATCCCCTTTTATCTAGTTTGATGAC 59.224 37.037 0.00 0.00 32.39 3.06
3093 5142 7.872138 ACATCCCCTTTTATCTAGTTTGATGA 58.128 34.615 0.00 0.00 32.39 2.92
3094 5143 9.799106 ATACATCCCCTTTTATCTAGTTTGATG 57.201 33.333 0.00 0.00 33.80 3.07
3096 5145 9.225682 AGATACATCCCCTTTTATCTAGTTTGA 57.774 33.333 0.00 0.00 30.95 2.69
3103 5152 8.980832 ACATCTAGATACATCCCCTTTTATCT 57.019 34.615 4.54 0.00 35.79 1.98
3110 5159 9.845214 ACTAAAATACATCTAGATACATCCCCT 57.155 33.333 4.54 0.00 0.00 4.79
3155 5204 8.800972 CGAAAATACTTGTCATCAAAATGGATG 58.199 33.333 0.00 0.00 44.78 3.51
3156 5205 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
3157 5206 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
3158 5207 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
3159 5208 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
3160 5209 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
3161 5210 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
3162 5211 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
3163 5212 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
3164 5213 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
3165 5214 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
3166 5215 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
3167 5216 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
3168 5217 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
3169 5218 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
3170 5219 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
3171 5220 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
3172 5221 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
3173 5222 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
3174 5223 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
3175 5224 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
3176 5225 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
3177 5226 0.251297 TGTACTCCCTCCGTCCGAAA 60.251 55.000 0.00 0.00 0.00 3.46
3178 5227 0.033796 ATGTACTCCCTCCGTCCGAA 60.034 55.000 0.00 0.00 0.00 4.30
3179 5228 0.750546 CATGTACTCCCTCCGTCCGA 60.751 60.000 0.00 0.00 0.00 4.55
3180 5229 1.734137 CATGTACTCCCTCCGTCCG 59.266 63.158 0.00 0.00 0.00 4.79
3181 5230 0.686769 ACCATGTACTCCCTCCGTCC 60.687 60.000 0.00 0.00 0.00 4.79
3182 5231 0.745468 GACCATGTACTCCCTCCGTC 59.255 60.000 0.00 0.00 0.00 4.79
3183 5232 0.335361 AGACCATGTACTCCCTCCGT 59.665 55.000 0.00 0.00 0.00 4.69
3184 5233 2.359981 TAGACCATGTACTCCCTCCG 57.640 55.000 0.00 0.00 0.00 4.63
3185 5234 3.644335 AGTTAGACCATGTACTCCCTCC 58.356 50.000 0.00 0.00 0.00 4.30
3186 5235 5.279056 GCATAGTTAGACCATGTACTCCCTC 60.279 48.000 0.00 0.00 0.00 4.30
3187 5236 4.589374 GCATAGTTAGACCATGTACTCCCT 59.411 45.833 0.00 0.00 0.00 4.20
3188 5237 4.262506 GGCATAGTTAGACCATGTACTCCC 60.263 50.000 0.00 0.00 0.00 4.30
3189 5238 4.589374 AGGCATAGTTAGACCATGTACTCC 59.411 45.833 0.00 0.00 0.00 3.85
3190 5239 5.793030 AGGCATAGTTAGACCATGTACTC 57.207 43.478 0.00 0.00 0.00 2.59
3191 5240 5.900123 AGAAGGCATAGTTAGACCATGTACT 59.100 40.000 0.00 0.00 0.00 2.73
3192 5241 6.163135 AGAAGGCATAGTTAGACCATGTAC 57.837 41.667 0.00 0.00 0.00 2.90
3193 5242 5.304614 GGAGAAGGCATAGTTAGACCATGTA 59.695 44.000 0.00 0.00 0.00 2.29
3194 5243 4.101741 GGAGAAGGCATAGTTAGACCATGT 59.898 45.833 0.00 0.00 0.00 3.21
3195 5244 4.346418 AGGAGAAGGCATAGTTAGACCATG 59.654 45.833 0.00 0.00 0.00 3.66
3408 5457 1.550976 ACTTCCTCTTTACGAGCCCTG 59.449 52.381 0.00 0.00 38.49 4.45
3612 5661 4.022589 ACAGCAGATTGACCTTTTGACATG 60.023 41.667 0.00 0.00 0.00 3.21
3639 5688 1.669115 CCAGTCACCCTGCTTCACG 60.669 63.158 0.00 0.00 40.06 4.35
3757 5809 6.183360 TGCAAAGTTAAGAAAGTTGCATCTGA 60.183 34.615 5.33 0.00 32.27 3.27
4045 6103 2.124695 GGACACTCCCATTCGCCC 60.125 66.667 0.00 0.00 0.00 6.13
4048 6106 0.246635 ACGAAGGACACTCCCATTCG 59.753 55.000 8.10 8.10 46.03 3.34
4157 6222 4.083377 GCGGAAAGGTTAACCAAATCGTTA 60.083 41.667 26.26 0.00 38.89 3.18
4164 6229 2.959707 ACAATGCGGAAAGGTTAACCAA 59.040 40.909 26.26 3.46 38.89 3.67
4168 6233 6.146347 GCAAAATAACAATGCGGAAAGGTTAA 59.854 34.615 3.38 0.00 0.00 2.01
4335 6400 1.752501 GATCGCGGTGTGGTTCGATG 61.753 60.000 6.13 0.00 41.11 3.84
4350 6415 2.799412 GTGCTTATTCTGCTCCAGATCG 59.201 50.000 0.00 0.00 40.39 3.69
4437 6502 2.603021 TCATCAGATAGTGGAGCCCTC 58.397 52.381 0.00 0.00 0.00 4.30
4492 6557 0.041047 TTGTCGTCGTCGTCATCGTT 60.041 50.000 2.91 0.00 35.45 3.85
4583 6648 0.036294 AGGTTCTTGGGAAGTAGCGC 60.036 55.000 0.00 0.00 32.46 5.92
4584 6649 2.474410 AAGGTTCTTGGGAAGTAGCG 57.526 50.000 0.00 0.00 32.46 4.26
4603 6668 3.401002 TCCTTCCATTTTTCCCTCTCCAA 59.599 43.478 0.00 0.00 0.00 3.53
4626 6691 1.636769 GGTTCCCCCTGGACATCTCC 61.637 65.000 0.00 0.00 41.57 3.71
4684 6749 3.400054 GGGAACACGAGGGGAGGG 61.400 72.222 0.00 0.00 0.00 4.30
4743 6808 4.201990 GCACCAGAAAACCATGATGAGATC 60.202 45.833 0.00 0.00 0.00 2.75
4855 6920 4.651778 TCACTGAATTTTGTACCTCTGGG 58.348 43.478 0.00 0.00 38.88 4.45
4884 6949 7.575414 TGCTGGTAAAAGAACATCAGTAAAA 57.425 32.000 0.00 0.00 0.00 1.52
4892 6958 4.023193 CGGAAGTTGCTGGTAAAAGAACAT 60.023 41.667 0.00 0.00 0.00 2.71
4933 7002 3.701040 TCTGCCATAAAATTTCTGCTCCC 59.299 43.478 0.00 0.00 0.00 4.30
4944 7013 6.472016 TGTCTCATTGTAGTCTGCCATAAAA 58.528 36.000 0.00 0.00 0.00 1.52
4963 7032 5.070446 TGACCTAACATGGACCATATGTCTC 59.930 44.000 6.67 0.00 43.89 3.36
4964 7033 4.968719 TGACCTAACATGGACCATATGTCT 59.031 41.667 6.67 0.00 43.89 3.41
5004 7074 8.378565 ACAGAGAGAATCAAGAAACATTAAGGA 58.621 33.333 0.00 0.00 37.82 3.36
5044 7114 2.073037 GATCCTACGGGACCACTCGC 62.073 65.000 0.00 0.00 45.43 5.03
5046 7116 1.777941 AAGATCCTACGGGACCACTC 58.222 55.000 0.00 0.00 45.43 3.51
5090 7160 8.482852 AATCCTCATGATTCCGGATAATTTTT 57.517 30.769 4.15 0.00 39.56 1.94
5102 7172 2.031682 CCCGCGAAAATCCTCATGATTC 60.032 50.000 8.23 0.00 42.97 2.52
5121 7191 2.426738 TCGTTGCCATTCATCAATTCCC 59.573 45.455 0.00 0.00 0.00 3.97
5229 7300 9.643652 GCATTTCATTTCGTCAAACAAAATAAA 57.356 25.926 0.00 0.00 0.00 1.40
5230 7301 8.279103 GGCATTTCATTTCGTCAAACAAAATAA 58.721 29.630 0.00 0.00 0.00 1.40
5231 7302 7.655328 AGGCATTTCATTTCGTCAAACAAAATA 59.345 29.630 0.00 0.00 0.00 1.40
5232 7303 6.482973 AGGCATTTCATTTCGTCAAACAAAAT 59.517 30.769 0.00 0.00 0.00 1.82
5233 7304 5.814705 AGGCATTTCATTTCGTCAAACAAAA 59.185 32.000 0.00 0.00 0.00 2.44
5234 7305 5.355596 AGGCATTTCATTTCGTCAAACAAA 58.644 33.333 0.00 0.00 0.00 2.83
5268 7342 6.657541 ACATTAAAGAAACAAGGGCGATAGAA 59.342 34.615 0.00 0.00 39.76 2.10
5271 7345 6.827586 AACATTAAAGAAACAAGGGCGATA 57.172 33.333 0.00 0.00 0.00 2.92
5273 7347 5.163499 ACAAACATTAAAGAAACAAGGGCGA 60.163 36.000 0.00 0.00 0.00 5.54
5274 7348 5.047188 ACAAACATTAAAGAAACAAGGGCG 58.953 37.500 0.00 0.00 0.00 6.13
5285 7359 9.108284 ACCCAAATCTTGAAACAAACATTAAAG 57.892 29.630 0.00 0.00 0.00 1.85
5293 7367 6.597280 CCTTTTCACCCAAATCTTGAAACAAA 59.403 34.615 0.00 0.00 38.61 2.83
5297 7371 4.102367 CCCCTTTTCACCCAAATCTTGAAA 59.898 41.667 0.00 0.00 37.44 2.69
5322 7396 4.221703 TCCTCAAAAGTCACTCATCCTCTC 59.778 45.833 0.00 0.00 0.00 3.20
5326 7400 3.604582 CCTCCTCAAAAGTCACTCATCC 58.395 50.000 0.00 0.00 0.00 3.51
5348 7422 8.571336 CCAATAGCAATGGAAACTAAAGGATAG 58.429 37.037 0.00 0.00 40.56 2.08
5367 7441 4.413495 TGTCGCTTAAACAACCAATAGC 57.587 40.909 0.00 0.00 0.00 2.97
5475 7551 8.364142 AGATTAGACTATCTTATCAACCACTGC 58.636 37.037 7.39 0.00 35.59 4.40
5545 7623 9.523168 AGTTACTACTAAGATGAAGAGACAACT 57.477 33.333 0.00 0.00 31.21 3.16
5580 7661 8.868522 ATCTCTCCTCACATTCACATTTTTAA 57.131 30.769 0.00 0.00 0.00 1.52
5659 7747 7.929941 AATATTCAGGTGGAGAAAAGAGAAC 57.070 36.000 0.00 0.00 0.00 3.01
5777 7867 3.530265 ATGTGTGCAAAAGCCCATATG 57.470 42.857 0.00 0.00 0.00 1.78
5789 7879 5.833406 TCTTTTGAGAGAAAATGTGTGCA 57.167 34.783 0.00 0.00 0.00 4.57
5791 7881 8.566260 AGAGATTCTTTTGAGAGAAAATGTGTG 58.434 33.333 0.00 0.00 38.98 3.82
5821 7911 7.646548 AAGAATAGGAATTTCAAAGTAGCCC 57.353 36.000 0.00 0.00 0.00 5.19
5933 8023 5.945155 TCGGGCATACTTAATTTGTGTTTC 58.055 37.500 0.00 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.