Multiple sequence alignment - TraesCS4B01G046400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G046400 chr4B 100.000 1813 0 0 1283 3095 33361139 33359327 0.000000e+00 3349.0
1 TraesCS4B01G046400 chr4B 100.000 531 0 0 492 1022 33361930 33361400 0.000000e+00 981.0
2 TraesCS4B01G046400 chr4B 100.000 285 0 0 1 285 33362421 33362137 7.600000e-146 527.0
3 TraesCS4B01G046400 chr4D 89.244 1720 92 36 1283 2970 21510255 21511913 0.000000e+00 2065.0
4 TraesCS4B01G046400 chr4D 82.723 382 19 22 671 1022 21509901 21510265 2.330000e-76 296.0
5 TraesCS4B01G046400 chr4D 97.531 81 2 0 2968 3048 21511941 21512021 4.160000e-29 139.0
6 TraesCS4B01G046400 chr4A 87.754 1723 104 44 1283 2970 580477677 580479327 0.000000e+00 1914.0
7 TraesCS4B01G046400 chr4A 84.783 368 24 21 671 1022 580477336 580477687 1.060000e-89 340.0
8 TraesCS4B01G046400 chr5A 92.208 77 5 1 569 644 621862195 621862271 1.170000e-19 108.0
9 TraesCS4B01G046400 chr2D 91.781 73 5 1 569 641 154162546 154162617 1.960000e-17 100.0
10 TraesCS4B01G046400 chr2A 88.312 77 8 1 569 644 3972515 3972439 1.180000e-14 91.6
11 TraesCS4B01G046400 chr6D 77.885 104 19 4 179 280 368296247 368296348 9.270000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G046400 chr4B 33359327 33362421 3094 True 1619.000000 3349 100.000000 1 3095 3 chr4B.!!$R1 3094
1 TraesCS4B01G046400 chr4D 21509901 21512021 2120 False 833.333333 2065 89.832667 671 3048 3 chr4D.!!$F1 2377
2 TraesCS4B01G046400 chr4A 580477336 580479327 1991 False 1127.000000 1914 86.268500 671 2970 2 chr4A.!!$F1 2299

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
540 541 0.029433 GCTAGGCGCCTATTTGCAAC 59.971 55.0 35.29 15.20 0.00 4.17 F
599 600 0.037590 CTGACCCCGGGATTTTGTCA 59.962 55.0 26.32 24.27 34.95 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1357 1397 0.033090 GGTTTAGATACGAGGGGCGG 59.967 60.0 0.0 0.0 46.49 6.13 R
2566 2642 0.242017 GCAAGAAATGGAGCAGCGTT 59.758 50.0 0.0 0.0 0.00 4.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.522483 TCCGAGGAGGAGGAAGATG 57.478 57.895 0.00 0.00 45.98 2.90
21 22 0.105964 TCCGAGGAGGAGGAAGATGG 60.106 60.000 0.00 0.00 45.98 3.51
22 23 1.745264 CGAGGAGGAGGAAGATGGC 59.255 63.158 0.00 0.00 0.00 4.40
23 24 1.045350 CGAGGAGGAGGAAGATGGCA 61.045 60.000 0.00 0.00 0.00 4.92
24 25 0.467804 GAGGAGGAGGAAGATGGCAC 59.532 60.000 0.00 0.00 0.00 5.01
25 26 1.144936 GGAGGAGGAAGATGGCACG 59.855 63.158 0.00 0.00 0.00 5.34
26 27 1.144936 GAGGAGGAAGATGGCACGG 59.855 63.158 0.00 0.00 0.00 4.94
27 28 2.190578 GGAGGAAGATGGCACGGG 59.809 66.667 0.00 0.00 0.00 5.28
28 29 2.190578 GAGGAAGATGGCACGGGG 59.809 66.667 0.00 0.00 0.00 5.73
29 30 4.115199 AGGAAGATGGCACGGGGC 62.115 66.667 3.20 3.20 43.74 5.80
30 31 4.115199 GGAAGATGGCACGGGGCT 62.115 66.667 14.22 0.00 44.01 5.19
31 32 2.514824 GAAGATGGCACGGGGCTC 60.515 66.667 14.22 7.71 44.01 4.70
32 33 4.115199 AAGATGGCACGGGGCTCC 62.115 66.667 14.22 3.81 44.01 4.70
34 35 4.554036 GATGGCACGGGGCTCCTC 62.554 72.222 14.22 2.81 44.01 3.71
38 39 4.459089 GCACGGGGCTCCTCTGAC 62.459 72.222 0.00 0.00 40.25 3.51
39 40 3.775654 CACGGGGCTCCTCTGACC 61.776 72.222 0.00 0.00 0.00 4.02
44 45 4.154347 GGCTCCTCTGACCGCCAG 62.154 72.222 0.00 0.00 44.27 4.85
45 46 4.828925 GCTCCTCTGACCGCCAGC 62.829 72.222 0.00 0.00 42.62 4.85
46 47 4.154347 CTCCTCTGACCGCCAGCC 62.154 72.222 0.00 0.00 42.62 4.85
47 48 4.704103 TCCTCTGACCGCCAGCCT 62.704 66.667 0.00 0.00 42.62 4.58
48 49 4.154347 CCTCTGACCGCCAGCCTC 62.154 72.222 0.00 0.00 42.62 4.70
49 50 4.154347 CTCTGACCGCCAGCCTCC 62.154 72.222 0.00 0.00 42.62 4.30
50 51 4.704103 TCTGACCGCCAGCCTCCT 62.704 66.667 0.00 0.00 42.62 3.69
51 52 4.463879 CTGACCGCCAGCCTCCTG 62.464 72.222 0.00 0.00 35.89 3.86
69 70 4.897357 CTGGCGCCGCAGAGCATA 62.897 66.667 23.90 0.00 33.08 3.14
70 71 4.465480 TGGCGCCGCAGAGCATAA 62.465 61.111 23.90 0.00 33.08 1.90
71 72 2.974698 GGCGCCGCAGAGCATAAT 60.975 61.111 12.58 0.00 33.08 1.28
72 73 2.250485 GCGCCGCAGAGCATAATG 59.750 61.111 3.15 0.00 0.00 1.90
73 74 2.246739 GCGCCGCAGAGCATAATGA 61.247 57.895 3.15 0.00 0.00 2.57
74 75 1.566563 CGCCGCAGAGCATAATGAC 59.433 57.895 0.00 0.00 0.00 3.06
75 76 1.566563 GCCGCAGAGCATAATGACG 59.433 57.895 0.00 0.00 0.00 4.35
76 77 0.875908 GCCGCAGAGCATAATGACGA 60.876 55.000 0.00 0.00 0.00 4.20
77 78 1.570813 CCGCAGAGCATAATGACGAA 58.429 50.000 0.00 0.00 0.00 3.85
78 79 1.524355 CCGCAGAGCATAATGACGAAG 59.476 52.381 0.00 0.00 0.00 3.79
79 80 1.070975 CGCAGAGCATAATGACGAAGC 60.071 52.381 0.00 0.00 0.00 3.86
80 81 1.262683 GCAGAGCATAATGACGAAGCC 59.737 52.381 0.00 0.00 0.00 4.35
81 82 2.554142 CAGAGCATAATGACGAAGCCA 58.446 47.619 0.00 0.00 0.00 4.75
82 83 2.543012 CAGAGCATAATGACGAAGCCAG 59.457 50.000 0.00 0.00 0.00 4.85
83 84 1.262683 GAGCATAATGACGAAGCCAGC 59.737 52.381 0.00 0.00 0.00 4.85
84 85 0.041839 GCATAATGACGAAGCCAGCG 60.042 55.000 0.00 0.00 0.00 5.18
85 86 0.583438 CATAATGACGAAGCCAGCGG 59.417 55.000 0.00 0.00 0.00 5.52
86 87 0.532862 ATAATGACGAAGCCAGCGGG 60.533 55.000 0.00 0.00 37.18 6.13
112 113 2.048127 GTCGGACCTGACCTGCAC 60.048 66.667 0.00 0.00 32.61 4.57
113 114 3.311110 TCGGACCTGACCTGCACC 61.311 66.667 0.00 0.00 0.00 5.01
114 115 3.625897 CGGACCTGACCTGCACCA 61.626 66.667 0.00 0.00 0.00 4.17
115 116 2.032681 GGACCTGACCTGCACCAC 59.967 66.667 0.00 0.00 0.00 4.16
116 117 2.032681 GACCTGACCTGCACCACC 59.967 66.667 0.00 0.00 0.00 4.61
117 118 3.553095 GACCTGACCTGCACCACCC 62.553 68.421 0.00 0.00 0.00 4.61
118 119 4.351054 CCTGACCTGCACCACCCC 62.351 72.222 0.00 0.00 0.00 4.95
119 120 4.704833 CTGACCTGCACCACCCCG 62.705 72.222 0.00 0.00 0.00 5.73
140 141 2.664851 CTTGTGTCGGCGCCTCAA 60.665 61.111 26.68 20.81 0.00 3.02
141 142 2.954753 CTTGTGTCGGCGCCTCAAC 61.955 63.158 26.68 19.57 0.00 3.18
142 143 4.980805 TGTGTCGGCGCCTCAACC 62.981 66.667 26.68 12.60 0.00 3.77
143 144 4.681978 GTGTCGGCGCCTCAACCT 62.682 66.667 26.68 0.00 0.00 3.50
144 145 4.373116 TGTCGGCGCCTCAACCTC 62.373 66.667 26.68 7.09 0.00 3.85
151 152 4.785453 GCCTCAACCTCGGCCTGG 62.785 72.222 0.00 5.53 40.43 4.45
152 153 4.101448 CCTCAACCTCGGCCTGGG 62.101 72.222 14.90 12.05 0.00 4.45
153 154 3.322466 CTCAACCTCGGCCTGGGT 61.322 66.667 14.90 12.65 37.44 4.51
154 155 3.316573 CTCAACCTCGGCCTGGGTC 62.317 68.421 15.38 0.00 34.35 4.46
155 156 4.760047 CAACCTCGGCCTGGGTCG 62.760 72.222 15.38 7.36 45.47 4.79
173 174 4.039357 CACCAGCCGACGACGAGT 62.039 66.667 9.28 0.00 42.66 4.18
174 175 3.292936 ACCAGCCGACGACGAGTT 61.293 61.111 9.28 0.00 42.66 3.01
175 176 2.805353 CCAGCCGACGACGAGTTG 60.805 66.667 9.28 7.18 42.66 3.16
180 181 4.394078 CGACGACGAGTTGGGCGA 62.394 66.667 0.00 0.00 42.66 5.54
181 182 2.804090 GACGACGAGTTGGGCGAC 60.804 66.667 0.00 0.00 0.00 5.19
196 197 4.222847 GACCCGGGCGAGATGGAC 62.223 72.222 24.08 0.00 0.00 4.02
198 199 3.550431 CCCGGGCGAGATGGACAT 61.550 66.667 8.08 0.00 0.00 3.06
199 200 2.280389 CCGGGCGAGATGGACATG 60.280 66.667 0.00 0.00 0.00 3.21
200 201 2.969238 CGGGCGAGATGGACATGC 60.969 66.667 0.00 0.00 0.00 4.06
201 202 2.592861 GGGCGAGATGGACATGCC 60.593 66.667 0.00 4.12 44.98 4.40
209 210 2.046023 TGGACATGCCAAGCTCCG 60.046 61.111 6.42 0.00 45.87 4.63
210 211 2.268920 GGACATGCCAAGCTCCGA 59.731 61.111 0.00 0.00 36.34 4.55
211 212 1.817099 GGACATGCCAAGCTCCGAG 60.817 63.158 0.00 0.00 36.34 4.63
212 213 1.219124 GACATGCCAAGCTCCGAGA 59.781 57.895 0.00 0.00 0.00 4.04
213 214 1.078848 ACATGCCAAGCTCCGAGAC 60.079 57.895 0.00 0.00 0.00 3.36
214 215 1.817099 CATGCCAAGCTCCGAGACC 60.817 63.158 0.00 0.00 0.00 3.85
215 216 2.293318 ATGCCAAGCTCCGAGACCA 61.293 57.895 0.00 0.00 0.00 4.02
216 217 2.435059 GCCAAGCTCCGAGACCAC 60.435 66.667 0.00 0.00 0.00 4.16
217 218 2.266055 CCAAGCTCCGAGACCACC 59.734 66.667 0.00 0.00 0.00 4.61
218 219 2.125912 CAAGCTCCGAGACCACCG 60.126 66.667 0.00 0.00 0.00 4.94
225 226 3.188965 CGAGACCACCGGACTCTC 58.811 66.667 9.46 12.76 41.09 3.20
226 227 2.408241 CGAGACCACCGGACTCTCC 61.408 68.421 9.46 0.00 41.09 3.71
227 228 2.037527 AGACCACCGGACTCTCCC 59.962 66.667 9.46 0.00 31.13 4.30
244 245 3.207669 CGCAGGAAGGCAGATGGC 61.208 66.667 0.00 0.00 43.74 4.40
271 272 4.593864 GGGCTGCGAGATCCCGAC 62.594 72.222 0.00 0.00 0.00 4.79
272 273 4.933064 GGCTGCGAGATCCCGACG 62.933 72.222 0.00 0.00 0.00 5.12
276 277 4.286320 GCGAGATCCCGACGCCAT 62.286 66.667 0.00 0.00 45.35 4.40
277 278 2.355126 CGAGATCCCGACGCCATG 60.355 66.667 0.00 0.00 0.00 3.66
278 279 2.029666 GAGATCCCGACGCCATGG 59.970 66.667 7.63 7.63 0.00 3.66
280 281 3.861797 GATCCCGACGCCATGGGT 61.862 66.667 15.13 9.85 46.13 4.51
281 282 4.175337 ATCCCGACGCCATGGGTG 62.175 66.667 15.13 3.46 46.13 4.61
538 539 4.141144 GCTAGGCGCCTATTTGCA 57.859 55.556 35.29 15.63 0.00 4.08
539 540 2.404083 GCTAGGCGCCTATTTGCAA 58.596 52.632 35.29 14.83 0.00 4.08
540 541 0.029433 GCTAGGCGCCTATTTGCAAC 59.971 55.000 35.29 15.20 0.00 4.17
541 542 1.668419 CTAGGCGCCTATTTGCAACT 58.332 50.000 35.29 9.83 0.00 3.16
542 543 2.017049 CTAGGCGCCTATTTGCAACTT 58.983 47.619 35.29 9.26 0.00 2.66
543 544 0.527565 AGGCGCCTATTTGCAACTTG 59.472 50.000 31.86 0.00 0.00 3.16
544 545 0.525761 GGCGCCTATTTGCAACTTGA 59.474 50.000 22.15 0.00 0.00 3.02
545 546 1.067915 GGCGCCTATTTGCAACTTGAA 60.068 47.619 22.15 0.00 0.00 2.69
546 547 2.609244 GGCGCCTATTTGCAACTTGAAA 60.609 45.455 22.15 0.00 0.00 2.69
547 548 3.056304 GCGCCTATTTGCAACTTGAAAA 58.944 40.909 0.00 0.00 0.00 2.29
548 549 3.679502 GCGCCTATTTGCAACTTGAAAAT 59.320 39.130 11.74 11.74 38.97 1.82
549 550 4.434593 GCGCCTATTTGCAACTTGAAAATG 60.435 41.667 15.58 7.48 36.35 2.32
550 551 4.922692 CGCCTATTTGCAACTTGAAAATGA 59.077 37.500 15.58 2.59 36.35 2.57
551 552 5.061311 CGCCTATTTGCAACTTGAAAATGAG 59.939 40.000 15.58 9.04 36.35 2.90
552 553 6.158598 GCCTATTTGCAACTTGAAAATGAGA 58.841 36.000 15.58 0.00 36.35 3.27
553 554 6.646240 GCCTATTTGCAACTTGAAAATGAGAA 59.354 34.615 15.58 0.00 36.35 2.87
554 555 7.171337 GCCTATTTGCAACTTGAAAATGAGAAA 59.829 33.333 15.58 0.00 36.35 2.52
555 556 8.490355 CCTATTTGCAACTTGAAAATGAGAAAC 58.510 33.333 15.58 0.00 36.35 2.78
556 557 5.947503 TTGCAACTTGAAAATGAGAAACG 57.052 34.783 0.00 0.00 0.00 3.60
557 558 4.992688 TGCAACTTGAAAATGAGAAACGT 58.007 34.783 0.00 0.00 0.00 3.99
558 559 4.797868 TGCAACTTGAAAATGAGAAACGTG 59.202 37.500 0.00 0.00 0.00 4.49
559 560 5.034152 GCAACTTGAAAATGAGAAACGTGA 58.966 37.500 0.00 0.00 0.00 4.35
560 561 5.687285 GCAACTTGAAAATGAGAAACGTGAT 59.313 36.000 0.00 0.00 0.00 3.06
561 562 6.345250 GCAACTTGAAAATGAGAAACGTGATG 60.345 38.462 0.00 0.00 0.00 3.07
562 563 5.762045 ACTTGAAAATGAGAAACGTGATGG 58.238 37.500 0.00 0.00 0.00 3.51
563 564 5.530915 ACTTGAAAATGAGAAACGTGATGGA 59.469 36.000 0.00 0.00 0.00 3.41
564 565 5.356882 TGAAAATGAGAAACGTGATGGAC 57.643 39.130 0.00 0.00 0.00 4.02
565 566 4.819088 TGAAAATGAGAAACGTGATGGACA 59.181 37.500 0.00 0.00 0.00 4.02
566 567 5.298026 TGAAAATGAGAAACGTGATGGACAA 59.702 36.000 0.00 0.00 0.00 3.18
567 568 5.964958 AAATGAGAAACGTGATGGACAAT 57.035 34.783 0.00 0.00 0.00 2.71
568 569 5.964958 AATGAGAAACGTGATGGACAATT 57.035 34.783 0.00 0.00 0.00 2.32
569 570 5.964958 ATGAGAAACGTGATGGACAATTT 57.035 34.783 0.00 0.00 0.00 1.82
570 571 5.107109 TGAGAAACGTGATGGACAATTTG 57.893 39.130 0.00 0.00 0.00 2.32
571 572 4.023279 TGAGAAACGTGATGGACAATTTGG 60.023 41.667 0.78 0.00 0.00 3.28
572 573 4.141287 AGAAACGTGATGGACAATTTGGA 58.859 39.130 0.78 0.00 0.00 3.53
573 574 4.216257 AGAAACGTGATGGACAATTTGGAG 59.784 41.667 0.78 0.00 0.00 3.86
574 575 3.417069 ACGTGATGGACAATTTGGAGA 57.583 42.857 0.78 0.00 0.00 3.71
575 576 3.338249 ACGTGATGGACAATTTGGAGAG 58.662 45.455 0.78 0.00 0.00 3.20
576 577 3.007940 ACGTGATGGACAATTTGGAGAGA 59.992 43.478 0.78 0.00 0.00 3.10
577 578 4.002982 CGTGATGGACAATTTGGAGAGAA 58.997 43.478 0.78 0.00 0.00 2.87
578 579 4.637534 CGTGATGGACAATTTGGAGAGAAT 59.362 41.667 0.78 0.00 0.00 2.40
579 580 5.124457 CGTGATGGACAATTTGGAGAGAATT 59.876 40.000 0.78 0.00 0.00 2.17
580 581 6.558909 GTGATGGACAATTTGGAGAGAATTC 58.441 40.000 0.00 0.00 0.00 2.17
581 582 6.376581 GTGATGGACAATTTGGAGAGAATTCT 59.623 38.462 7.95 7.95 36.01 2.40
582 583 6.376299 TGATGGACAATTTGGAGAGAATTCTG 59.624 38.462 14.00 0.00 32.53 3.02
583 584 5.879763 TGGACAATTTGGAGAGAATTCTGA 58.120 37.500 14.00 0.00 32.53 3.27
584 585 5.707298 TGGACAATTTGGAGAGAATTCTGAC 59.293 40.000 14.00 6.32 32.53 3.51
585 586 5.124617 GGACAATTTGGAGAGAATTCTGACC 59.875 44.000 14.00 15.44 32.53 4.02
586 587 5.012893 ACAATTTGGAGAGAATTCTGACCC 58.987 41.667 14.00 11.08 32.53 4.46
587 588 3.721087 TTTGGAGAGAATTCTGACCCC 57.279 47.619 14.00 8.64 32.53 4.95
588 589 1.195115 TGGAGAGAATTCTGACCCCG 58.805 55.000 14.00 0.00 32.53 5.73
589 590 0.466124 GGAGAGAATTCTGACCCCGG 59.534 60.000 14.00 0.00 32.53 5.73
590 591 0.466124 GAGAGAATTCTGACCCCGGG 59.534 60.000 15.80 15.80 32.53 5.73
591 592 0.042731 AGAGAATTCTGACCCCGGGA 59.957 55.000 26.32 0.00 30.72 5.14
592 593 1.132500 GAGAATTCTGACCCCGGGAT 58.868 55.000 26.32 3.03 0.00 3.85
593 594 1.490910 GAGAATTCTGACCCCGGGATT 59.509 52.381 26.32 12.94 29.47 3.01
594 595 1.923148 AGAATTCTGACCCCGGGATTT 59.077 47.619 26.32 5.25 26.94 2.17
595 596 2.311841 AGAATTCTGACCCCGGGATTTT 59.688 45.455 26.32 4.64 26.94 1.82
596 597 2.143876 ATTCTGACCCCGGGATTTTG 57.856 50.000 26.32 7.20 0.00 2.44
597 598 0.774908 TTCTGACCCCGGGATTTTGT 59.225 50.000 26.32 11.32 0.00 2.83
598 599 0.326927 TCTGACCCCGGGATTTTGTC 59.673 55.000 26.32 20.76 0.00 3.18
599 600 0.037590 CTGACCCCGGGATTTTGTCA 59.962 55.000 26.32 24.27 34.95 3.58
600 601 0.701731 TGACCCCGGGATTTTGTCAT 59.298 50.000 26.32 0.00 31.45 3.06
601 602 1.916874 TGACCCCGGGATTTTGTCATA 59.083 47.619 26.32 2.15 31.45 2.15
602 603 2.092646 TGACCCCGGGATTTTGTCATAG 60.093 50.000 26.32 2.06 31.45 2.23
603 604 2.171870 GACCCCGGGATTTTGTCATAGA 59.828 50.000 26.32 0.00 0.00 1.98
604 605 2.092592 ACCCCGGGATTTTGTCATAGAC 60.093 50.000 26.32 0.00 0.00 2.59
605 606 2.092646 CCCCGGGATTTTGTCATAGACA 60.093 50.000 26.32 0.00 41.09 3.41
619 620 7.716768 TGTCATAGACAAATGTACGAAACAA 57.283 32.000 0.00 0.00 39.63 2.83
620 621 8.144155 TGTCATAGACAAATGTACGAAACAAA 57.856 30.769 0.00 0.00 39.63 2.83
621 622 8.779303 TGTCATAGACAAATGTACGAAACAAAT 58.221 29.630 0.00 0.00 39.63 2.32
622 623 9.262472 GTCATAGACAAATGTACGAAACAAATC 57.738 33.333 0.00 0.00 35.54 2.17
623 624 8.447833 TCATAGACAAATGTACGAAACAAATCC 58.552 33.333 0.00 0.00 42.70 3.01
624 625 6.627395 AGACAAATGTACGAAACAAATCCA 57.373 33.333 0.00 0.00 42.70 3.41
625 626 7.033530 AGACAAATGTACGAAACAAATCCAA 57.966 32.000 0.00 0.00 42.70 3.53
626 627 7.657336 AGACAAATGTACGAAACAAATCCAAT 58.343 30.769 0.00 0.00 42.70 3.16
627 628 8.141268 AGACAAATGTACGAAACAAATCCAATT 58.859 29.630 0.00 0.00 42.70 2.32
628 629 8.655651 ACAAATGTACGAAACAAATCCAATTT 57.344 26.923 0.00 0.00 42.70 1.82
662 663 6.920569 AAAAACTGAAGCGAGAAGTAGAAA 57.079 33.333 0.00 0.00 0.00 2.52
663 664 5.908916 AAACTGAAGCGAGAAGTAGAAAC 57.091 39.130 0.00 0.00 0.00 2.78
664 665 4.585955 ACTGAAGCGAGAAGTAGAAACA 57.414 40.909 0.00 0.00 0.00 2.83
665 666 4.551388 ACTGAAGCGAGAAGTAGAAACAG 58.449 43.478 0.00 0.00 0.00 3.16
666 667 4.278669 ACTGAAGCGAGAAGTAGAAACAGA 59.721 41.667 0.00 0.00 0.00 3.41
667 668 4.799678 TGAAGCGAGAAGTAGAAACAGAG 58.200 43.478 0.00 0.00 0.00 3.35
668 669 3.224884 AGCGAGAAGTAGAAACAGAGC 57.775 47.619 0.00 0.00 0.00 4.09
669 670 1.914700 GCGAGAAGTAGAAACAGAGCG 59.085 52.381 0.00 0.00 0.00 5.03
701 702 4.584518 CTGCACTGCCCACCACCA 62.585 66.667 0.00 0.00 0.00 4.17
702 703 4.892965 TGCACTGCCCACCACCAC 62.893 66.667 0.00 0.00 0.00 4.16
757 763 2.646175 CGCGAGTGGGAAGGGAAGA 61.646 63.158 0.00 0.00 0.00 2.87
773 779 4.415332 GAGAAGCCGGTCGCGACA 62.415 66.667 37.26 1.56 44.76 4.35
774 780 4.421479 AGAAGCCGGTCGCGACAG 62.421 66.667 37.26 33.11 44.76 3.51
840 846 0.669619 TCGTCTGAACCGTACTTGCA 59.330 50.000 0.00 0.00 0.00 4.08
905 918 3.280151 CCCCAATTCCCACCCCCA 61.280 66.667 0.00 0.00 0.00 4.96
906 919 2.038813 CCCAATTCCCACCCCCAC 59.961 66.667 0.00 0.00 0.00 4.61
909 922 3.280968 AATTCCCACCCCCACCCC 61.281 66.667 0.00 0.00 0.00 4.95
910 923 3.867360 AATTCCCACCCCCACCCCT 62.867 63.158 0.00 0.00 0.00 4.79
915 928 3.189646 CACCCCCACCCCTCCAAA 61.190 66.667 0.00 0.00 0.00 3.28
974 1013 3.714871 GAGAGACAGCCGAGCCAGC 62.715 68.421 0.00 0.00 0.00 4.85
1383 1423 2.228343 CCTCGTATCTAAACCCTAGCCG 59.772 54.545 0.00 0.00 0.00 5.52
1387 1427 1.755393 ATCTAAACCCTAGCCGCCGG 61.755 60.000 0.00 0.00 0.00 6.13
1388 1428 2.684655 TAAACCCTAGCCGCCGGT 60.685 61.111 4.45 0.00 0.00 5.28
1461 1504 6.294731 CCGATCTGGGAAAATTGACTTCTTTT 60.295 38.462 0.00 0.00 0.00 2.27
1468 1511 3.923017 AATTGACTTCTTTTGGCTCCG 57.077 42.857 0.00 0.00 0.00 4.63
1730 1785 3.083997 GGACATGGAGGCGGAGGT 61.084 66.667 0.00 0.00 0.00 3.85
1733 1788 4.181010 CATGGAGGCGGAGGTGGG 62.181 72.222 0.00 0.00 0.00 4.61
1847 1911 2.762875 GCCAGGCTACTACCCCGT 60.763 66.667 3.29 0.00 0.00 5.28
2141 2208 3.005791 GCTAACATTTCCACTTTGTGCCT 59.994 43.478 0.00 0.00 31.34 4.75
2145 2212 1.110442 TTTCCACTTTGTGCCTGGTG 58.890 50.000 0.00 0.00 31.34 4.17
2146 2213 0.033601 TTCCACTTTGTGCCTGGTGT 60.034 50.000 0.00 0.00 31.34 4.16
2147 2214 0.465460 TCCACTTTGTGCCTGGTGTC 60.465 55.000 0.00 0.00 31.34 3.67
2148 2215 1.455383 CCACTTTGTGCCTGGTGTCC 61.455 60.000 0.00 0.00 31.34 4.02
2164 2231 1.006571 TCCGTCCGTTCTGTTCAGC 60.007 57.895 0.00 0.00 0.00 4.26
2200 2269 4.446385 TCTCCGTTCGTGTTGTTCTAATTG 59.554 41.667 0.00 0.00 0.00 2.32
2242 2316 3.117171 CAGCAGCGTCTGTCCAGC 61.117 66.667 8.32 0.00 33.43 4.85
2325 2399 2.768492 GGCGACGGACGGTGTATCT 61.768 63.158 1.66 0.00 42.83 1.98
2340 2415 5.178623 CGGTGTATCTCTCTGTATCTCTGTC 59.821 48.000 0.00 0.00 0.00 3.51
2341 2416 6.058833 GGTGTATCTCTCTGTATCTCTGTCA 58.941 44.000 0.00 0.00 0.00 3.58
2342 2417 6.204688 GGTGTATCTCTCTGTATCTCTGTCAG 59.795 46.154 0.00 0.00 0.00 3.51
2343 2418 5.762711 TGTATCTCTCTGTATCTCTGTCAGC 59.237 44.000 0.00 0.00 0.00 4.26
2344 2419 3.202097 TCTCTCTGTATCTCTGTCAGCG 58.798 50.000 0.00 0.00 0.00 5.18
2365 2440 0.179134 AGCGCACACTTAGTCGATCC 60.179 55.000 11.47 0.00 0.00 3.36
2385 2460 1.003696 CTTTCCTTCCACCAGGAGGAC 59.996 57.143 4.83 0.00 46.74 3.85
2388 2463 1.127567 CCTTCCACCAGGAGGACACA 61.128 60.000 4.83 0.00 46.74 3.72
2395 2470 1.374758 CAGGAGGACACAACGAGCC 60.375 63.158 0.00 0.00 0.00 4.70
2418 2493 1.291588 CGTCTGCTTCTGCTCCAGT 59.708 57.895 0.00 0.00 40.48 4.00
2420 2495 0.319728 GTCTGCTTCTGCTCCAGTGA 59.680 55.000 0.00 0.00 40.48 3.41
2421 2496 0.319728 TCTGCTTCTGCTCCAGTGAC 59.680 55.000 0.00 0.00 40.48 3.67
2438 2513 5.417811 CAGTGACTGTATTGATGCTCTTCT 58.582 41.667 4.01 0.00 0.00 2.85
2485 2560 7.279758 TCACATTGATTTTTGTTCCTTTTGACC 59.720 33.333 0.00 0.00 0.00 4.02
2524 2600 2.337583 CGGTTGTCGATCTGTGATGTT 58.662 47.619 0.00 0.00 42.43 2.71
2533 2609 3.928992 CGATCTGTGATGTTAACACTGCT 59.071 43.478 11.22 0.00 38.81 4.24
2553 2629 4.937620 TGCTCTCCAGTAGCTGTTAAAATG 59.062 41.667 0.00 0.00 40.73 2.32
2582 2660 1.160137 GTGAACGCTGCTCCATTTCT 58.840 50.000 0.00 0.00 0.00 2.52
2584 2662 1.536766 TGAACGCTGCTCCATTTCTTG 59.463 47.619 0.00 0.00 0.00 3.02
2589 2667 1.475280 GCTGCTCCATTTCTTGCATGA 59.525 47.619 0.00 0.00 34.79 3.07
2600 2678 7.662258 TCCATTTCTTGCATGATTTCAAACATT 59.338 29.630 2.75 0.00 0.00 2.71
2606 2684 5.991568 TGCATGATTTCAAACATTTGCTTG 58.008 33.333 0.00 0.00 38.05 4.01
2607 2685 4.849383 GCATGATTTCAAACATTTGCTTGC 59.151 37.500 0.00 3.10 38.05 4.01
2608 2686 5.387279 CATGATTTCAAACATTTGCTTGCC 58.613 37.500 0.00 0.00 38.05 4.52
2609 2687 3.814283 TGATTTCAAACATTTGCTTGCCC 59.186 39.130 0.00 0.00 38.05 5.36
2610 2688 2.996249 TTCAAACATTTGCTTGCCCA 57.004 40.000 0.00 0.00 38.05 5.36
2611 2689 2.996249 TCAAACATTTGCTTGCCCAA 57.004 40.000 0.00 0.00 38.05 4.12
2612 2690 3.488778 TCAAACATTTGCTTGCCCAAT 57.511 38.095 0.00 0.00 38.05 3.16
2613 2691 3.139850 TCAAACATTTGCTTGCCCAATG 58.860 40.909 10.98 10.98 38.05 2.82
2614 2692 2.188062 AACATTTGCTTGCCCAATGG 57.812 45.000 14.84 0.00 0.00 3.16
2615 2693 1.350071 ACATTTGCTTGCCCAATGGA 58.650 45.000 0.00 0.00 0.00 3.41
2620 2698 1.143183 GCTTGCCCAATGGAGCATG 59.857 57.895 14.47 16.33 39.11 4.06
2651 2729 1.811266 CAAGGACTGGGATCACGCG 60.811 63.158 3.53 3.53 0.00 6.01
2671 2749 1.968540 GATATGCCTTGCCTCCGCC 60.969 63.158 0.00 0.00 0.00 6.13
2672 2750 2.680974 GATATGCCTTGCCTCCGCCA 62.681 60.000 0.00 0.00 0.00 5.69
2673 2751 2.965716 ATATGCCTTGCCTCCGCCAC 62.966 60.000 0.00 0.00 0.00 5.01
2694 2772 1.006571 TGTTCTCTGGACCGCGAAC 60.007 57.895 8.23 1.18 37.02 3.95
2836 2918 2.795165 CGAGTAGCAGTCCTAGGCA 58.205 57.895 2.96 0.00 0.00 4.75
2837 2919 0.665835 CGAGTAGCAGTCCTAGGCAG 59.334 60.000 2.96 0.00 0.00 4.85
2838 2920 1.770294 GAGTAGCAGTCCTAGGCAGT 58.230 55.000 2.96 0.00 0.00 4.40
2840 2922 2.498078 GAGTAGCAGTCCTAGGCAGTTT 59.502 50.000 2.96 0.00 0.00 2.66
2841 2923 2.498078 AGTAGCAGTCCTAGGCAGTTTC 59.502 50.000 2.96 0.00 0.00 2.78
2885 2974 2.079170 TGCAGGTAGAGAGAGATGGG 57.921 55.000 0.00 0.00 0.00 4.00
2900 2992 3.127533 GGGTGAGCACGACATGGC 61.128 66.667 0.00 0.00 0.00 4.40
2902 2994 3.127533 GTGAGCACGACATGGCCC 61.128 66.667 0.00 0.00 0.00 5.80
2919 3011 2.189521 CGGGCTCCGGTGCTTTAT 59.810 61.111 26.25 0.00 44.15 1.40
2920 3012 1.887707 CGGGCTCCGGTGCTTTATC 60.888 63.158 26.25 10.44 44.15 1.75
2921 3013 1.223487 GGGCTCCGGTGCTTTATCA 59.777 57.895 26.25 0.00 0.00 2.15
2922 3014 0.179018 GGGCTCCGGTGCTTTATCAT 60.179 55.000 26.25 0.00 0.00 2.45
2923 3015 1.230324 GGCTCCGGTGCTTTATCATC 58.770 55.000 26.25 5.01 0.00 2.92
2924 3016 1.202698 GGCTCCGGTGCTTTATCATCT 60.203 52.381 26.25 0.00 0.00 2.90
2925 3017 2.139118 GCTCCGGTGCTTTATCATCTC 58.861 52.381 20.97 0.00 0.00 2.75
2926 3018 2.760374 CTCCGGTGCTTTATCATCTCC 58.240 52.381 0.00 0.00 0.00 3.71
2932 3024 3.372025 GGTGCTTTATCATCTCCCTGGTT 60.372 47.826 0.00 0.00 0.00 3.67
2939 3031 3.914426 TCATCTCCCTGGTTAAAGAGC 57.086 47.619 0.00 0.00 0.00 4.09
2954 3046 4.871933 AAAGAGCGGTTCAATCCAATTT 57.128 36.364 0.00 0.00 0.00 1.82
2970 3092 5.278873 TCCAATTTCATTCCATCATCCCAA 58.721 37.500 0.00 0.00 0.00 4.12
3048 3170 1.196354 GTCGTCTTCTTCCTCGTTCGA 59.804 52.381 0.00 0.00 0.00 3.71
3049 3171 1.463831 TCGTCTTCTTCCTCGTTCGAG 59.536 52.381 14.26 14.26 0.00 4.04
3050 3172 1.197264 CGTCTTCTTCCTCGTTCGAGT 59.803 52.381 18.59 0.00 0.00 4.18
3051 3173 2.350580 CGTCTTCTTCCTCGTTCGAGTT 60.351 50.000 18.59 0.00 0.00 3.01
3052 3174 2.981140 GTCTTCTTCCTCGTTCGAGTTG 59.019 50.000 18.59 9.69 0.00 3.16
3053 3175 2.882761 TCTTCTTCCTCGTTCGAGTTGA 59.117 45.455 18.59 11.45 0.00 3.18
3054 3176 2.991434 TCTTCCTCGTTCGAGTTGAG 57.009 50.000 18.59 13.24 0.00 3.02
3055 3177 1.068472 TCTTCCTCGTTCGAGTTGAGC 60.068 52.381 18.59 0.00 0.00 4.26
3063 3185 0.796312 TTCGAGTTGAGCGAAATGGC 59.204 50.000 0.00 0.00 43.82 4.40
3065 3187 0.798776 CGAGTTGAGCGAAATGGCTT 59.201 50.000 0.00 0.00 44.93 4.35
3066 3188 1.201965 CGAGTTGAGCGAAATGGCTTC 60.202 52.381 0.00 0.00 44.93 3.86
3076 3198 3.331251 GAAATGGCTTCGATCTTGCTC 57.669 47.619 0.00 0.00 0.00 4.26
3077 3199 1.673168 AATGGCTTCGATCTTGCTCC 58.327 50.000 0.00 0.00 0.00 4.70
3078 3200 0.179034 ATGGCTTCGATCTTGCTCCC 60.179 55.000 0.00 0.00 0.00 4.30
3079 3201 1.267574 TGGCTTCGATCTTGCTCCCT 61.268 55.000 0.00 0.00 0.00 4.20
3080 3202 0.531753 GGCTTCGATCTTGCTCCCTC 60.532 60.000 0.00 0.00 0.00 4.30
3081 3203 0.531753 GCTTCGATCTTGCTCCCTCC 60.532 60.000 0.00 0.00 0.00 4.30
3082 3204 0.249238 CTTCGATCTTGCTCCCTCCG 60.249 60.000 0.00 0.00 0.00 4.63
3083 3205 0.970937 TTCGATCTTGCTCCCTCCGT 60.971 55.000 0.00 0.00 0.00 4.69
3084 3206 1.066587 CGATCTTGCTCCCTCCGTC 59.933 63.158 0.00 0.00 0.00 4.79
3085 3207 1.443828 GATCTTGCTCCCTCCGTCC 59.556 63.158 0.00 0.00 0.00 4.79
3086 3208 2.356818 GATCTTGCTCCCTCCGTCCG 62.357 65.000 0.00 0.00 0.00 4.79
3087 3209 2.856039 ATCTTGCTCCCTCCGTCCGA 62.856 60.000 0.00 0.00 0.00 4.55
3088 3210 2.602267 TTGCTCCCTCCGTCCGAA 60.602 61.111 0.00 0.00 0.00 4.30
3089 3211 2.167398 CTTGCTCCCTCCGTCCGAAA 62.167 60.000 0.00 0.00 0.00 3.46
3090 3212 1.760479 TTGCTCCCTCCGTCCGAAAA 61.760 55.000 0.00 0.00 0.00 2.29
3091 3213 1.221021 GCTCCCTCCGTCCGAAAAT 59.779 57.895 0.00 0.00 0.00 1.82
3092 3214 0.462789 GCTCCCTCCGTCCGAAAATA 59.537 55.000 0.00 0.00 0.00 1.40
3093 3215 1.805495 GCTCCCTCCGTCCGAAAATAC 60.805 57.143 0.00 0.00 0.00 1.89
3094 3216 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.689575 CCATCTTCCTCCTCCTCGGAA 60.690 57.143 0.00 0.00 42.53 4.30
2 3 0.105964 CCATCTTCCTCCTCCTCGGA 60.106 60.000 0.00 0.00 40.30 4.55
3 4 1.753368 GCCATCTTCCTCCTCCTCGG 61.753 65.000 0.00 0.00 0.00 4.63
4 5 1.045350 TGCCATCTTCCTCCTCCTCG 61.045 60.000 0.00 0.00 0.00 4.63
5 6 0.467804 GTGCCATCTTCCTCCTCCTC 59.532 60.000 0.00 0.00 0.00 3.71
6 7 1.333636 CGTGCCATCTTCCTCCTCCT 61.334 60.000 0.00 0.00 0.00 3.69
7 8 1.144936 CGTGCCATCTTCCTCCTCC 59.855 63.158 0.00 0.00 0.00 4.30
8 9 1.144936 CCGTGCCATCTTCCTCCTC 59.855 63.158 0.00 0.00 0.00 3.71
9 10 2.370445 CCCGTGCCATCTTCCTCCT 61.370 63.158 0.00 0.00 0.00 3.69
10 11 2.190578 CCCGTGCCATCTTCCTCC 59.809 66.667 0.00 0.00 0.00 4.30
11 12 2.190578 CCCCGTGCCATCTTCCTC 59.809 66.667 0.00 0.00 0.00 3.71
12 13 4.115199 GCCCCGTGCCATCTTCCT 62.115 66.667 0.00 0.00 0.00 3.36
13 14 4.115199 AGCCCCGTGCCATCTTCC 62.115 66.667 0.00 0.00 42.71 3.46
14 15 2.514824 GAGCCCCGTGCCATCTTC 60.515 66.667 0.00 0.00 42.71 2.87
15 16 4.115199 GGAGCCCCGTGCCATCTT 62.115 66.667 0.00 0.00 42.71 2.40
17 18 4.554036 GAGGAGCCCCGTGCCATC 62.554 72.222 0.00 0.00 42.71 3.51
21 22 4.459089 GTCAGAGGAGCCCCGTGC 62.459 72.222 0.00 0.00 41.71 5.34
22 23 3.775654 GGTCAGAGGAGCCCCGTG 61.776 72.222 0.00 0.00 37.58 4.94
27 28 4.154347 CTGGCGGTCAGAGGAGCC 62.154 72.222 2.80 4.22 46.18 4.70
28 29 4.828925 GCTGGCGGTCAGAGGAGC 62.829 72.222 14.91 0.00 46.18 4.70
29 30 4.154347 GGCTGGCGGTCAGAGGAG 62.154 72.222 14.91 0.00 46.18 3.69
30 31 4.704103 AGGCTGGCGGTCAGAGGA 62.704 66.667 14.91 0.00 46.18 3.71
31 32 4.154347 GAGGCTGGCGGTCAGAGG 62.154 72.222 14.91 0.00 46.18 3.69
32 33 4.154347 GGAGGCTGGCGGTCAGAG 62.154 72.222 14.91 0.00 46.18 3.35
33 34 4.704103 AGGAGGCTGGCGGTCAGA 62.704 66.667 14.91 0.00 46.18 3.27
34 35 4.463879 CAGGAGGCTGGCGGTCAG 62.464 72.222 4.96 4.96 46.03 3.51
52 53 4.897357 TATGCTCTGCGGCGCCAG 62.897 66.667 30.82 24.80 34.52 4.85
53 54 3.755526 ATTATGCTCTGCGGCGCCA 62.756 57.895 30.82 20.21 34.52 5.69
54 55 2.974698 ATTATGCTCTGCGGCGCC 60.975 61.111 30.82 19.07 34.52 6.53
55 56 2.246739 TCATTATGCTCTGCGGCGC 61.247 57.895 27.44 27.44 34.52 6.53
56 57 1.566563 GTCATTATGCTCTGCGGCG 59.433 57.895 0.51 0.51 34.52 6.46
57 58 0.875908 TCGTCATTATGCTCTGCGGC 60.876 55.000 0.00 0.00 0.00 6.53
58 59 1.524355 CTTCGTCATTATGCTCTGCGG 59.476 52.381 0.00 0.00 0.00 5.69
59 60 1.070975 GCTTCGTCATTATGCTCTGCG 60.071 52.381 0.00 0.00 0.00 5.18
60 61 1.262683 GGCTTCGTCATTATGCTCTGC 59.737 52.381 0.00 0.00 0.00 4.26
61 62 2.543012 CTGGCTTCGTCATTATGCTCTG 59.457 50.000 0.00 0.00 0.00 3.35
62 63 2.831333 CTGGCTTCGTCATTATGCTCT 58.169 47.619 0.00 0.00 0.00 4.09
63 64 1.262683 GCTGGCTTCGTCATTATGCTC 59.737 52.381 0.00 0.00 0.00 4.26
64 65 1.303309 GCTGGCTTCGTCATTATGCT 58.697 50.000 0.00 0.00 0.00 3.79
65 66 0.041839 CGCTGGCTTCGTCATTATGC 60.042 55.000 0.00 0.00 0.00 3.14
66 67 0.583438 CCGCTGGCTTCGTCATTATG 59.417 55.000 0.00 0.00 0.00 1.90
67 68 0.532862 CCCGCTGGCTTCGTCATTAT 60.533 55.000 0.00 0.00 0.00 1.28
68 69 1.153449 CCCGCTGGCTTCGTCATTA 60.153 57.895 0.00 0.00 0.00 1.90
69 70 2.436646 CCCGCTGGCTTCGTCATT 60.437 61.111 0.00 0.00 0.00 2.57
88 89 3.691342 TCAGGTCCGACCCGCAAG 61.691 66.667 14.32 0.08 39.75 4.01
89 90 3.998672 GTCAGGTCCGACCCGCAA 61.999 66.667 14.32 0.00 39.75 4.85
95 96 2.048127 GTGCAGGTCAGGTCCGAC 60.048 66.667 0.00 5.57 35.03 4.79
96 97 3.311110 GGTGCAGGTCAGGTCCGA 61.311 66.667 0.00 0.00 0.00 4.55
97 98 3.625897 TGGTGCAGGTCAGGTCCG 61.626 66.667 0.00 0.00 0.00 4.79
98 99 2.032681 GTGGTGCAGGTCAGGTCC 59.967 66.667 0.00 0.00 0.00 4.46
99 100 2.032681 GGTGGTGCAGGTCAGGTC 59.967 66.667 0.00 0.00 0.00 3.85
100 101 3.570212 GGGTGGTGCAGGTCAGGT 61.570 66.667 0.00 0.00 0.00 4.00
101 102 4.351054 GGGGTGGTGCAGGTCAGG 62.351 72.222 0.00 0.00 0.00 3.86
102 103 4.704833 CGGGGTGGTGCAGGTCAG 62.705 72.222 0.00 0.00 0.00 3.51
123 124 2.664851 TTGAGGCGCCGACACAAG 60.665 61.111 23.20 0.00 0.00 3.16
124 125 2.970324 GTTGAGGCGCCGACACAA 60.970 61.111 23.20 21.57 0.00 3.33
125 126 4.980805 GGTTGAGGCGCCGACACA 62.981 66.667 23.20 16.97 0.00 3.72
126 127 4.681978 AGGTTGAGGCGCCGACAC 62.682 66.667 23.20 18.06 0.00 3.67
127 128 4.373116 GAGGTTGAGGCGCCGACA 62.373 66.667 23.20 22.25 0.00 4.35
135 136 4.101448 CCCAGGCCGAGGTTGAGG 62.101 72.222 15.07 0.31 0.00 3.86
136 137 3.316573 GACCCAGGCCGAGGTTGAG 62.317 68.421 19.42 5.62 36.17 3.02
137 138 3.319198 GACCCAGGCCGAGGTTGA 61.319 66.667 19.42 0.00 36.17 3.18
138 139 4.760047 CGACCCAGGCCGAGGTTG 62.760 72.222 19.42 18.29 36.17 3.77
156 157 3.553437 AACTCGTCGTCGGCTGGTG 62.553 63.158 1.55 0.00 37.69 4.17
157 158 3.292936 AACTCGTCGTCGGCTGGT 61.293 61.111 1.55 0.00 37.69 4.00
158 159 2.805353 CAACTCGTCGTCGGCTGG 60.805 66.667 1.55 0.00 37.69 4.85
159 160 2.805353 CCAACTCGTCGTCGGCTG 60.805 66.667 1.55 0.00 37.69 4.85
160 161 4.052229 CCCAACTCGTCGTCGGCT 62.052 66.667 1.55 0.00 37.69 5.52
163 164 4.394078 TCGCCCAACTCGTCGTCG 62.394 66.667 0.00 0.00 38.55 5.12
164 165 2.804090 GTCGCCCAACTCGTCGTC 60.804 66.667 0.00 0.00 0.00 4.20
165 166 4.353437 GGTCGCCCAACTCGTCGT 62.353 66.667 0.00 0.00 0.00 4.34
179 180 4.222847 GTCCATCTCGCCCGGGTC 62.223 72.222 24.63 13.82 0.00 4.46
181 182 3.550431 ATGTCCATCTCGCCCGGG 61.550 66.667 19.09 19.09 0.00 5.73
182 183 2.280389 CATGTCCATCTCGCCCGG 60.280 66.667 0.00 0.00 0.00 5.73
183 184 2.969238 GCATGTCCATCTCGCCCG 60.969 66.667 0.00 0.00 0.00 6.13
184 185 2.592861 GGCATGTCCATCTCGCCC 60.593 66.667 0.00 0.00 36.73 6.13
185 186 1.442526 CTTGGCATGTCCATCTCGCC 61.443 60.000 9.28 0.00 46.04 5.54
186 187 2.020131 CTTGGCATGTCCATCTCGC 58.980 57.895 9.28 0.00 46.04 5.03
187 188 0.463295 AGCTTGGCATGTCCATCTCG 60.463 55.000 9.28 1.97 46.04 4.04
188 189 1.307097 GAGCTTGGCATGTCCATCTC 58.693 55.000 9.28 13.25 46.04 2.75
189 190 0.106819 GGAGCTTGGCATGTCCATCT 60.107 55.000 9.28 9.42 46.04 2.90
190 191 1.442526 CGGAGCTTGGCATGTCCATC 61.443 60.000 9.28 5.13 46.04 3.51
191 192 1.452651 CGGAGCTTGGCATGTCCAT 60.453 57.895 9.28 0.00 46.04 3.41
192 193 2.046023 CGGAGCTTGGCATGTCCA 60.046 61.111 16.39 4.93 44.85 4.02
193 194 1.817099 CTCGGAGCTTGGCATGTCC 60.817 63.158 0.00 6.99 0.00 4.02
194 195 1.086634 GTCTCGGAGCTTGGCATGTC 61.087 60.000 0.00 0.00 0.00 3.06
195 196 1.078848 GTCTCGGAGCTTGGCATGT 60.079 57.895 0.00 0.00 0.00 3.21
196 197 1.817099 GGTCTCGGAGCTTGGCATG 60.817 63.158 0.00 0.00 0.00 4.06
197 198 2.293318 TGGTCTCGGAGCTTGGCAT 61.293 57.895 0.00 0.00 0.00 4.40
198 199 2.922503 TGGTCTCGGAGCTTGGCA 60.923 61.111 0.00 0.00 0.00 4.92
199 200 2.435059 GTGGTCTCGGAGCTTGGC 60.435 66.667 0.00 0.00 0.00 4.52
200 201 2.266055 GGTGGTCTCGGAGCTTGG 59.734 66.667 0.00 0.00 0.00 3.61
201 202 2.125912 CGGTGGTCTCGGAGCTTG 60.126 66.667 0.00 0.00 0.00 4.01
208 209 2.408241 GGAGAGTCCGGTGGTCTCG 61.408 68.421 18.14 0.00 41.46 4.04
209 210 2.053277 GGGAGAGTCCGGTGGTCTC 61.053 68.421 17.15 17.15 37.43 3.36
210 211 2.037527 GGGAGAGTCCGGTGGTCT 59.962 66.667 0.00 1.49 37.43 3.85
211 212 3.450115 CGGGAGAGTCCGGTGGTC 61.450 72.222 0.00 0.00 45.78 4.02
218 219 2.726351 CCTTCCTGCGGGAGAGTCC 61.726 68.421 15.42 0.00 43.29 3.85
219 220 2.896443 CCTTCCTGCGGGAGAGTC 59.104 66.667 15.42 0.00 43.29 3.36
220 221 3.394836 GCCTTCCTGCGGGAGAGT 61.395 66.667 15.42 0.00 43.29 3.24
221 222 3.382803 CTGCCTTCCTGCGGGAGAG 62.383 68.421 15.42 14.41 41.99 3.20
222 223 3.393970 CTGCCTTCCTGCGGGAGA 61.394 66.667 15.42 5.36 41.99 3.71
223 224 2.739996 ATCTGCCTTCCTGCGGGAG 61.740 63.158 15.42 5.32 43.29 4.30
224 225 2.688666 ATCTGCCTTCCTGCGGGA 60.689 61.111 11.27 11.27 40.36 5.14
225 226 2.515523 CATCTGCCTTCCTGCGGG 60.516 66.667 4.71 4.71 38.20 6.13
226 227 2.515523 CCATCTGCCTTCCTGCGG 60.516 66.667 0.00 0.00 39.04 5.69
227 228 3.207669 GCCATCTGCCTTCCTGCG 61.208 66.667 0.00 0.00 0.00 5.18
228 229 2.044650 TGCCATCTGCCTTCCTGC 60.045 61.111 0.00 0.00 40.16 4.85
229 230 1.751927 GGTGCCATCTGCCTTCCTG 60.752 63.158 0.00 0.00 40.16 3.86
230 231 2.679716 GGTGCCATCTGCCTTCCT 59.320 61.111 0.00 0.00 40.16 3.36
231 232 2.825836 CGGTGCCATCTGCCTTCC 60.826 66.667 0.00 0.00 40.16 3.46
232 233 1.817099 CTCGGTGCCATCTGCCTTC 60.817 63.158 0.00 0.00 40.16 3.46
233 234 2.270205 CTCGGTGCCATCTGCCTT 59.730 61.111 0.00 0.00 40.16 4.35
234 235 3.790437 CCTCGGTGCCATCTGCCT 61.790 66.667 0.00 0.00 40.16 4.75
235 236 4.864334 CCCTCGGTGCCATCTGCC 62.864 72.222 0.00 0.00 40.16 4.85
254 255 4.593864 GTCGGGATCTCGCAGCCC 62.594 72.222 11.01 0.00 38.53 5.19
255 256 4.933064 CGTCGGGATCTCGCAGCC 62.933 72.222 11.01 0.00 0.00 4.85
260 261 2.355126 CATGGCGTCGGGATCTCG 60.355 66.667 9.25 9.25 0.00 4.04
261 262 2.029666 CCATGGCGTCGGGATCTC 59.970 66.667 0.00 0.00 0.00 2.75
262 263 3.550431 CCCATGGCGTCGGGATCT 61.550 66.667 6.09 0.00 46.34 2.75
263 264 3.861797 ACCCATGGCGTCGGGATC 61.862 66.667 17.66 0.00 46.34 3.36
264 265 4.175337 CACCCATGGCGTCGGGAT 62.175 66.667 17.66 3.48 46.34 3.85
522 523 1.668419 AGTTGCAAATAGGCGCCTAG 58.332 50.000 37.16 25.98 36.28 3.02
523 524 1.742831 CAAGTTGCAAATAGGCGCCTA 59.257 47.619 36.88 36.88 36.28 3.93
524 525 0.527565 CAAGTTGCAAATAGGCGCCT 59.472 50.000 34.85 34.85 36.28 5.52
525 526 0.525761 TCAAGTTGCAAATAGGCGCC 59.474 50.000 21.89 21.89 36.28 6.53
526 527 2.346099 TTCAAGTTGCAAATAGGCGC 57.654 45.000 0.00 0.00 36.28 6.53
527 528 4.922692 TCATTTTCAAGTTGCAAATAGGCG 59.077 37.500 12.24 2.40 36.28 5.52
528 529 6.158598 TCTCATTTTCAAGTTGCAAATAGGC 58.841 36.000 12.24 0.00 0.00 3.93
529 530 8.490355 GTTTCTCATTTTCAAGTTGCAAATAGG 58.510 33.333 12.24 8.78 0.00 2.57
530 531 8.209869 CGTTTCTCATTTTCAAGTTGCAAATAG 58.790 33.333 12.24 10.41 0.00 1.73
531 532 7.704472 ACGTTTCTCATTTTCAAGTTGCAAATA 59.296 29.630 12.24 0.00 0.00 1.40
532 533 6.534793 ACGTTTCTCATTTTCAAGTTGCAAAT 59.465 30.769 0.00 7.55 0.00 2.32
533 534 5.866633 ACGTTTCTCATTTTCAAGTTGCAAA 59.133 32.000 0.00 3.14 0.00 3.68
534 535 5.288232 CACGTTTCTCATTTTCAAGTTGCAA 59.712 36.000 0.00 0.00 0.00 4.08
535 536 4.797868 CACGTTTCTCATTTTCAAGTTGCA 59.202 37.500 0.00 0.00 0.00 4.08
536 537 5.034152 TCACGTTTCTCATTTTCAAGTTGC 58.966 37.500 0.00 0.00 0.00 4.17
537 538 6.142798 CCATCACGTTTCTCATTTTCAAGTTG 59.857 38.462 0.00 0.00 0.00 3.16
538 539 6.039270 TCCATCACGTTTCTCATTTTCAAGTT 59.961 34.615 0.00 0.00 0.00 2.66
539 540 5.530915 TCCATCACGTTTCTCATTTTCAAGT 59.469 36.000 0.00 0.00 0.00 3.16
540 541 5.853282 GTCCATCACGTTTCTCATTTTCAAG 59.147 40.000 0.00 0.00 0.00 3.02
541 542 5.298026 TGTCCATCACGTTTCTCATTTTCAA 59.702 36.000 0.00 0.00 0.00 2.69
542 543 4.819088 TGTCCATCACGTTTCTCATTTTCA 59.181 37.500 0.00 0.00 0.00 2.69
543 544 5.356882 TGTCCATCACGTTTCTCATTTTC 57.643 39.130 0.00 0.00 0.00 2.29
544 545 5.766150 TTGTCCATCACGTTTCTCATTTT 57.234 34.783 0.00 0.00 0.00 1.82
545 546 5.964958 ATTGTCCATCACGTTTCTCATTT 57.035 34.783 0.00 0.00 0.00 2.32
546 547 5.964958 AATTGTCCATCACGTTTCTCATT 57.035 34.783 0.00 0.00 0.00 2.57
547 548 5.335897 CCAAATTGTCCATCACGTTTCTCAT 60.336 40.000 0.00 0.00 0.00 2.90
548 549 4.023279 CCAAATTGTCCATCACGTTTCTCA 60.023 41.667 0.00 0.00 0.00 3.27
549 550 4.215399 TCCAAATTGTCCATCACGTTTCTC 59.785 41.667 0.00 0.00 0.00 2.87
550 551 4.141287 TCCAAATTGTCCATCACGTTTCT 58.859 39.130 0.00 0.00 0.00 2.52
551 552 4.215399 TCTCCAAATTGTCCATCACGTTTC 59.785 41.667 0.00 0.00 0.00 2.78
552 553 4.141287 TCTCCAAATTGTCCATCACGTTT 58.859 39.130 0.00 0.00 0.00 3.60
553 554 3.750371 TCTCCAAATTGTCCATCACGTT 58.250 40.909 0.00 0.00 0.00 3.99
554 555 3.007940 TCTCTCCAAATTGTCCATCACGT 59.992 43.478 0.00 0.00 0.00 4.49
555 556 3.599343 TCTCTCCAAATTGTCCATCACG 58.401 45.455 0.00 0.00 0.00 4.35
556 557 6.376581 AGAATTCTCTCCAAATTGTCCATCAC 59.623 38.462 0.88 0.00 0.00 3.06
557 558 6.376299 CAGAATTCTCTCCAAATTGTCCATCA 59.624 38.462 4.57 0.00 0.00 3.07
558 559 6.600822 TCAGAATTCTCTCCAAATTGTCCATC 59.399 38.462 4.57 0.00 0.00 3.51
559 560 6.376581 GTCAGAATTCTCTCCAAATTGTCCAT 59.623 38.462 4.57 0.00 0.00 3.41
560 561 5.707298 GTCAGAATTCTCTCCAAATTGTCCA 59.293 40.000 4.57 0.00 0.00 4.02
561 562 5.124617 GGTCAGAATTCTCTCCAAATTGTCC 59.875 44.000 4.57 0.00 0.00 4.02
562 563 5.124617 GGGTCAGAATTCTCTCCAAATTGTC 59.875 44.000 20.36 2.45 0.00 3.18
563 564 5.012893 GGGTCAGAATTCTCTCCAAATTGT 58.987 41.667 20.36 0.00 0.00 2.71
564 565 4.400567 GGGGTCAGAATTCTCTCCAAATTG 59.599 45.833 20.36 4.16 0.00 2.32
565 566 4.604156 GGGGTCAGAATTCTCTCCAAATT 58.396 43.478 20.36 0.00 0.00 1.82
566 567 3.370953 CGGGGTCAGAATTCTCTCCAAAT 60.371 47.826 20.36 0.00 0.00 2.32
567 568 2.027192 CGGGGTCAGAATTCTCTCCAAA 60.027 50.000 20.36 0.00 0.00 3.28
568 569 1.555075 CGGGGTCAGAATTCTCTCCAA 59.445 52.381 20.36 0.00 0.00 3.53
569 570 1.195115 CGGGGTCAGAATTCTCTCCA 58.805 55.000 20.36 0.00 0.00 3.86
570 571 0.466124 CCGGGGTCAGAATTCTCTCC 59.534 60.000 4.57 10.57 0.00 3.71
571 572 0.466124 CCCGGGGTCAGAATTCTCTC 59.534 60.000 14.71 1.47 0.00 3.20
572 573 0.042731 TCCCGGGGTCAGAATTCTCT 59.957 55.000 23.50 0.00 0.00 3.10
573 574 1.132500 ATCCCGGGGTCAGAATTCTC 58.868 55.000 23.50 0.00 0.00 2.87
574 575 1.596496 AATCCCGGGGTCAGAATTCT 58.404 50.000 23.50 0.88 0.00 2.40
575 576 2.427095 CAAAATCCCGGGGTCAGAATTC 59.573 50.000 23.50 0.00 0.00 2.17
576 577 2.225267 ACAAAATCCCGGGGTCAGAATT 60.225 45.455 23.50 9.04 0.00 2.17
577 578 1.357761 ACAAAATCCCGGGGTCAGAAT 59.642 47.619 23.50 1.55 0.00 2.40
578 579 0.774908 ACAAAATCCCGGGGTCAGAA 59.225 50.000 23.50 0.00 0.00 3.02
579 580 0.326927 GACAAAATCCCGGGGTCAGA 59.673 55.000 23.50 0.00 0.00 3.27
580 581 0.037590 TGACAAAATCCCGGGGTCAG 59.962 55.000 23.50 9.76 33.88 3.51
581 582 0.701731 ATGACAAAATCCCGGGGTCA 59.298 50.000 25.65 25.65 42.07 4.02
582 583 2.171870 TCTATGACAAAATCCCGGGGTC 59.828 50.000 23.50 19.76 0.00 4.46
583 584 2.092592 GTCTATGACAAAATCCCGGGGT 60.093 50.000 23.50 12.21 32.09 4.95
584 585 2.092646 TGTCTATGACAAAATCCCGGGG 60.093 50.000 23.50 6.77 39.78 5.73
585 586 3.275617 TGTCTATGACAAAATCCCGGG 57.724 47.619 16.85 16.85 39.78 5.73
594 595 8.144155 TTGTTTCGTACATTTGTCTATGACAA 57.856 30.769 8.81 8.81 42.06 3.18
595 596 7.716768 TTGTTTCGTACATTTGTCTATGACA 57.283 32.000 0.00 0.00 37.41 3.58
596 597 9.262472 GATTTGTTTCGTACATTTGTCTATGAC 57.738 33.333 0.00 0.00 36.44 3.06
597 598 8.447833 GGATTTGTTTCGTACATTTGTCTATGA 58.552 33.333 0.00 0.00 36.44 2.15
598 599 8.233868 TGGATTTGTTTCGTACATTTGTCTATG 58.766 33.333 0.00 0.00 36.44 2.23
599 600 8.330466 TGGATTTGTTTCGTACATTTGTCTAT 57.670 30.769 0.00 0.00 36.44 1.98
600 601 7.731882 TGGATTTGTTTCGTACATTTGTCTA 57.268 32.000 0.00 0.00 36.44 2.59
601 602 6.627395 TGGATTTGTTTCGTACATTTGTCT 57.373 33.333 0.00 0.00 36.44 3.41
602 603 7.867445 ATTGGATTTGTTTCGTACATTTGTC 57.133 32.000 0.00 0.00 36.44 3.18
603 604 8.547069 CAAATTGGATTTGTTTCGTACATTTGT 58.453 29.630 5.46 0.00 43.47 2.83
604 605 8.916657 CAAATTGGATTTGTTTCGTACATTTG 57.083 30.769 5.46 0.00 43.47 2.32
639 640 6.315393 TGTTTCTACTTCTCGCTTCAGTTTTT 59.685 34.615 0.00 0.00 0.00 1.94
640 641 5.815740 TGTTTCTACTTCTCGCTTCAGTTTT 59.184 36.000 0.00 0.00 0.00 2.43
641 642 5.357257 TGTTTCTACTTCTCGCTTCAGTTT 58.643 37.500 0.00 0.00 0.00 2.66
642 643 4.945246 TGTTTCTACTTCTCGCTTCAGTT 58.055 39.130 0.00 0.00 0.00 3.16
643 644 4.278669 TCTGTTTCTACTTCTCGCTTCAGT 59.721 41.667 0.00 0.00 0.00 3.41
644 645 4.799678 TCTGTTTCTACTTCTCGCTTCAG 58.200 43.478 0.00 0.00 0.00 3.02
645 646 4.799678 CTCTGTTTCTACTTCTCGCTTCA 58.200 43.478 0.00 0.00 0.00 3.02
646 647 3.610677 GCTCTGTTTCTACTTCTCGCTTC 59.389 47.826 0.00 0.00 0.00 3.86
647 648 3.580731 GCTCTGTTTCTACTTCTCGCTT 58.419 45.455 0.00 0.00 0.00 4.68
648 649 2.414824 CGCTCTGTTTCTACTTCTCGCT 60.415 50.000 0.00 0.00 0.00 4.93
649 650 1.914700 CGCTCTGTTTCTACTTCTCGC 59.085 52.381 0.00 0.00 0.00 5.03
650 651 2.095161 ACCGCTCTGTTTCTACTTCTCG 60.095 50.000 0.00 0.00 0.00 4.04
651 652 3.246619 CACCGCTCTGTTTCTACTTCTC 58.753 50.000 0.00 0.00 0.00 2.87
652 653 2.028930 CCACCGCTCTGTTTCTACTTCT 60.029 50.000 0.00 0.00 0.00 2.85
653 654 2.029290 TCCACCGCTCTGTTTCTACTTC 60.029 50.000 0.00 0.00 0.00 3.01
654 655 1.968493 TCCACCGCTCTGTTTCTACTT 59.032 47.619 0.00 0.00 0.00 2.24
655 656 1.629043 TCCACCGCTCTGTTTCTACT 58.371 50.000 0.00 0.00 0.00 2.57
656 657 2.067013 GTTCCACCGCTCTGTTTCTAC 58.933 52.381 0.00 0.00 0.00 2.59
657 658 1.336517 CGTTCCACCGCTCTGTTTCTA 60.337 52.381 0.00 0.00 0.00 2.10
658 659 0.600255 CGTTCCACCGCTCTGTTTCT 60.600 55.000 0.00 0.00 0.00 2.52
659 660 1.566018 CCGTTCCACCGCTCTGTTTC 61.566 60.000 0.00 0.00 0.00 2.78
660 661 1.597027 CCGTTCCACCGCTCTGTTT 60.597 57.895 0.00 0.00 0.00 2.83
661 662 2.030562 CCGTTCCACCGCTCTGTT 59.969 61.111 0.00 0.00 0.00 3.16
662 663 4.681978 GCCGTTCCACCGCTCTGT 62.682 66.667 0.00 0.00 0.00 3.41
683 684 4.586235 GGTGGTGGGCAGTGCAGT 62.586 66.667 18.61 0.00 0.00 4.40
757 763 4.421479 CTGTCGCGACCGGCTTCT 62.421 66.667 34.34 0.00 40.38 2.85
803 809 0.108138 GAGGAATCTGTCGGGTGGTG 60.108 60.000 0.00 0.00 0.00 4.17
840 846 2.833121 GCGGGGCGGAAATGGAAT 60.833 61.111 0.00 0.00 0.00 3.01
905 918 1.201429 AGTGAGCGATTTGGAGGGGT 61.201 55.000 0.00 0.00 0.00 4.95
906 919 0.462759 GAGTGAGCGATTTGGAGGGG 60.463 60.000 0.00 0.00 0.00 4.79
909 922 0.250234 TGGGAGTGAGCGATTTGGAG 59.750 55.000 0.00 0.00 0.00 3.86
910 923 0.036388 GTGGGAGTGAGCGATTTGGA 60.036 55.000 0.00 0.00 0.00 3.53
913 926 0.670546 CGTGTGGGAGTGAGCGATTT 60.671 55.000 0.00 0.00 0.00 2.17
914 927 1.079819 CGTGTGGGAGTGAGCGATT 60.080 57.895 0.00 0.00 0.00 3.34
915 928 2.573869 CGTGTGGGAGTGAGCGAT 59.426 61.111 0.00 0.00 0.00 4.58
1329 1369 4.558884 CCTCGGGGTAGGAGGGGG 62.559 77.778 0.00 0.00 45.97 5.40
1356 1396 0.599466 GTTTAGATACGAGGGGCGGC 60.599 60.000 0.00 0.00 46.49 6.53
1357 1397 0.033090 GGTTTAGATACGAGGGGCGG 59.967 60.000 0.00 0.00 46.49 6.13
1359 1399 1.421480 AGGGTTTAGATACGAGGGGC 58.579 55.000 0.00 0.00 0.00 5.80
1360 1400 2.561858 GCTAGGGTTTAGATACGAGGGG 59.438 54.545 0.00 0.00 0.00 4.79
1361 1401 2.561858 GGCTAGGGTTTAGATACGAGGG 59.438 54.545 0.00 0.00 0.00 4.30
1362 1402 2.228343 CGGCTAGGGTTTAGATACGAGG 59.772 54.545 0.00 0.00 0.00 4.63
1363 1403 2.351544 GCGGCTAGGGTTTAGATACGAG 60.352 54.545 0.00 0.00 0.00 4.18
1364 1404 1.610522 GCGGCTAGGGTTTAGATACGA 59.389 52.381 0.00 0.00 0.00 3.43
1365 1405 1.336609 GGCGGCTAGGGTTTAGATACG 60.337 57.143 0.00 0.00 0.00 3.06
1366 1406 1.336609 CGGCGGCTAGGGTTTAGATAC 60.337 57.143 7.61 0.00 0.00 2.24
1367 1407 0.963962 CGGCGGCTAGGGTTTAGATA 59.036 55.000 7.61 0.00 0.00 1.98
1368 1408 1.746517 CGGCGGCTAGGGTTTAGAT 59.253 57.895 7.61 0.00 0.00 1.98
1394 1437 3.125573 GGAAAGAACGAGGCGGCC 61.126 66.667 12.11 12.11 0.00 6.13
1468 1511 0.322816 ATCATCTGCACCCACCACAC 60.323 55.000 0.00 0.00 0.00 3.82
1700 1749 0.748367 CATGTCCTCCTCCTCGACGA 60.748 60.000 0.00 0.00 0.00 4.20
1713 1762 3.083997 ACCTCCGCCTCCATGTCC 61.084 66.667 0.00 0.00 0.00 4.02
1730 1785 4.753662 CGTCGTCCTCCTCCCCCA 62.754 72.222 0.00 0.00 0.00 4.96
1733 1788 1.734748 GATTCGTCGTCCTCCTCCC 59.265 63.158 0.00 0.00 0.00 4.30
1861 1925 3.828083 TAGGAGGGGCGCCGATGAT 62.828 63.158 22.54 8.92 0.00 2.45
1862 1926 4.533124 TAGGAGGGGCGCCGATGA 62.533 66.667 22.54 0.00 0.00 2.92
2141 2208 1.678598 AACAGAACGGACGGACACCA 61.679 55.000 0.00 0.00 0.00 4.17
2145 2212 1.282930 GCTGAACAGAACGGACGGAC 61.283 60.000 5.97 0.00 0.00 4.79
2146 2213 1.006571 GCTGAACAGAACGGACGGA 60.007 57.895 5.97 0.00 0.00 4.69
2147 2214 2.372690 CGCTGAACAGAACGGACGG 61.373 63.158 5.97 0.00 0.00 4.79
2148 2215 1.660575 ACGCTGAACAGAACGGACG 60.661 57.895 5.97 1.47 0.00 4.79
2164 2231 1.449601 CGGAGAAATGACCCCCACG 60.450 63.158 0.00 0.00 0.00 4.94
2200 2269 0.959372 TCGTCTCGTCTTCCACCTCC 60.959 60.000 0.00 0.00 0.00 4.30
2234 2308 2.047844 CCCACACTCGCTGGACAG 60.048 66.667 0.00 0.00 0.00 3.51
2240 2314 2.265467 AAACACCACCCACACTCGCT 62.265 55.000 0.00 0.00 0.00 4.93
2242 2316 0.462937 TGAAACACCACCCACACTCG 60.463 55.000 0.00 0.00 0.00 4.18
2312 2386 1.380524 ACAGAGAGATACACCGTCCG 58.619 55.000 0.00 0.00 0.00 4.79
2313 2387 4.391155 AGATACAGAGAGATACACCGTCC 58.609 47.826 0.00 0.00 0.00 4.79
2325 2399 1.673400 GCGCTGACAGAGATACAGAGA 59.327 52.381 10.70 0.00 34.40 3.10
2343 2418 2.772189 GACTAAGTGTGCGCTGCG 59.228 61.111 19.17 19.17 0.00 5.18
2344 2419 1.078759 ATCGACTAAGTGTGCGCTGC 61.079 55.000 9.73 1.68 0.00 5.25
2365 2440 1.003696 GTCCTCCTGGTGGAAGGAAAG 59.996 57.143 18.52 0.00 45.81 2.62
2388 2463 4.421479 CAGACGCCTCGGCTCGTT 62.421 66.667 6.35 0.00 44.38 3.85
2395 2470 3.184683 GCAGAAGCAGACGCCTCG 61.185 66.667 0.00 0.00 41.58 4.63
2407 2482 3.578282 TCAATACAGTCACTGGAGCAGAA 59.422 43.478 10.28 0.00 35.51 3.02
2418 2493 5.186603 ACTGAGAAGAGCATCAATACAGTCA 59.813 40.000 0.00 0.00 35.29 3.41
2420 2495 5.674052 ACTGAGAAGAGCATCAATACAGT 57.326 39.130 0.00 0.00 37.82 3.55
2421 2496 6.104665 TGAACTGAGAAGAGCATCAATACAG 58.895 40.000 0.00 0.00 37.82 2.74
2438 2513 4.514816 TGATTCACGCTTGAAATGAACTGA 59.485 37.500 9.92 0.00 45.01 3.41
2485 2560 1.475751 CGGAAACCATGGGAGATGGAG 60.476 57.143 18.09 0.00 41.64 3.86
2524 2600 2.493675 CAGCTACTGGAGAGCAGTGTTA 59.506 50.000 0.00 0.00 42.69 2.41
2533 2609 4.905429 TGCATTTTAACAGCTACTGGAGA 58.095 39.130 0.00 0.00 35.51 3.71
2553 2629 0.780002 CAGCGTTCACTTGCAAATGC 59.220 50.000 2.29 3.92 42.50 3.56
2563 2639 1.160137 AGAAATGGAGCAGCGTTCAC 58.840 50.000 0.00 0.00 0.00 3.18
2564 2640 1.536766 CAAGAAATGGAGCAGCGTTCA 59.463 47.619 0.00 0.00 0.00 3.18
2566 2642 0.242017 GCAAGAAATGGAGCAGCGTT 59.758 50.000 0.00 0.00 0.00 4.84
2567 2643 0.890542 TGCAAGAAATGGAGCAGCGT 60.891 50.000 0.00 0.00 32.48 5.07
2569 2645 1.475280 TCATGCAAGAAATGGAGCAGC 59.525 47.619 0.00 0.00 40.71 5.25
2570 2646 4.386867 AATCATGCAAGAAATGGAGCAG 57.613 40.909 0.00 0.00 40.71 4.24
2582 2660 6.431278 CAAGCAAATGTTTGAAATCATGCAA 58.569 32.000 9.53 0.00 40.55 4.08
2584 2662 4.849383 GCAAGCAAATGTTTGAAATCATGC 59.151 37.500 13.25 3.26 40.55 4.06
2589 2667 3.818180 TGGGCAAGCAAATGTTTGAAAT 58.182 36.364 13.25 0.00 40.55 2.17
2600 2678 0.905809 ATGCTCCATTGGGCAAGCAA 60.906 50.000 18.31 5.82 44.44 3.91
2606 2684 0.174162 GACAACATGCTCCATTGGGC 59.826 55.000 2.09 6.06 0.00 5.36
2607 2685 0.819582 GGACAACATGCTCCATTGGG 59.180 55.000 2.09 0.00 0.00 4.12
2608 2686 0.819582 GGGACAACATGCTCCATTGG 59.180 55.000 0.00 0.00 0.00 3.16
2609 2687 1.843368 AGGGACAACATGCTCCATTG 58.157 50.000 6.92 0.16 0.00 2.82
2610 2688 2.173519 CAAGGGACAACATGCTCCATT 58.826 47.619 6.92 3.56 30.62 3.16
2611 2689 1.076024 ACAAGGGACAACATGCTCCAT 59.924 47.619 6.92 0.00 0.00 3.41
2612 2690 0.478072 ACAAGGGACAACATGCTCCA 59.522 50.000 6.92 0.00 0.00 3.86
2613 2691 0.883833 CACAAGGGACAACATGCTCC 59.116 55.000 0.00 0.00 0.00 4.70
2614 2692 0.242017 GCACAAGGGACAACATGCTC 59.758 55.000 0.00 0.00 0.00 4.26
2615 2693 0.467844 TGCACAAGGGACAACATGCT 60.468 50.000 0.00 0.00 34.18 3.79
2651 2729 1.510480 GCGGAGGCAAGGCATATCAC 61.510 60.000 0.00 0.00 39.62 3.06
2671 2749 1.372997 CGGTCCAGAGAACACCGTG 60.373 63.158 1.50 0.00 46.58 4.94
2672 2750 3.048602 CGGTCCAGAGAACACCGT 58.951 61.111 1.50 0.00 46.58 4.83
2746 2824 0.179081 GATCCGTTTTCTCTCCGGGG 60.179 60.000 0.00 0.00 41.98 5.73
2834 2916 3.676646 GCCATGAACATTCTTGAAACTGC 59.323 43.478 8.64 1.15 35.14 4.40
2835 2917 4.921515 CAGCCATGAACATTCTTGAAACTG 59.078 41.667 8.64 8.83 35.14 3.16
2836 2918 4.021719 CCAGCCATGAACATTCTTGAAACT 60.022 41.667 8.64 2.08 35.14 2.66
2837 2919 4.240096 CCAGCCATGAACATTCTTGAAAC 58.760 43.478 8.64 0.22 35.14 2.78
2838 2920 3.306225 GCCAGCCATGAACATTCTTGAAA 60.306 43.478 8.64 0.00 35.14 2.69
2840 2922 1.820519 GCCAGCCATGAACATTCTTGA 59.179 47.619 8.64 0.00 35.14 3.02
2841 2923 1.546923 TGCCAGCCATGAACATTCTTG 59.453 47.619 0.00 1.48 33.53 3.02
2885 2974 3.127533 GGGCCATGTCGTGCTCAC 61.128 66.667 4.39 0.00 0.00 3.51
2917 3009 4.039245 CGCTCTTTAACCAGGGAGATGATA 59.961 45.833 0.00 0.00 0.00 2.15
2918 3010 3.181461 CGCTCTTTAACCAGGGAGATGAT 60.181 47.826 0.00 0.00 0.00 2.45
2919 3011 2.168521 CGCTCTTTAACCAGGGAGATGA 59.831 50.000 0.00 0.00 0.00 2.92
2920 3012 2.555199 CGCTCTTTAACCAGGGAGATG 58.445 52.381 0.00 0.00 0.00 2.90
2921 3013 1.486726 CCGCTCTTTAACCAGGGAGAT 59.513 52.381 0.00 0.00 0.00 2.75
2922 3014 0.902531 CCGCTCTTTAACCAGGGAGA 59.097 55.000 0.00 0.00 0.00 3.71
2923 3015 0.613777 ACCGCTCTTTAACCAGGGAG 59.386 55.000 0.00 0.00 0.00 4.30
2924 3016 1.002773 GAACCGCTCTTTAACCAGGGA 59.997 52.381 0.00 0.00 0.00 4.20
2925 3017 1.271163 TGAACCGCTCTTTAACCAGGG 60.271 52.381 0.00 0.00 0.00 4.45
2926 3018 2.178912 TGAACCGCTCTTTAACCAGG 57.821 50.000 0.00 0.00 0.00 4.45
2932 3024 5.475220 TGAAATTGGATTGAACCGCTCTTTA 59.525 36.000 0.00 0.00 0.00 1.85
2939 3031 5.070770 TGGAATGAAATTGGATTGAACCG 57.929 39.130 0.00 0.00 36.07 4.44
2954 3046 1.563879 ACCGTTGGGATGATGGAATGA 59.436 47.619 0.00 0.00 36.97 2.57
2993 3115 1.375908 GAACTCAGCACCGCATGGA 60.376 57.895 0.00 0.00 39.21 3.41
3056 3178 2.032675 GGAGCAAGATCGAAGCCATTTC 59.967 50.000 0.00 0.00 0.00 2.17
3057 3179 2.019984 GGAGCAAGATCGAAGCCATTT 58.980 47.619 0.00 0.00 0.00 2.32
3058 3180 1.673168 GGAGCAAGATCGAAGCCATT 58.327 50.000 0.00 0.00 0.00 3.16
3059 3181 0.179034 GGGAGCAAGATCGAAGCCAT 60.179 55.000 0.00 0.00 0.00 4.40
3060 3182 1.221840 GGGAGCAAGATCGAAGCCA 59.778 57.895 0.00 0.00 0.00 4.75
3061 3183 0.531753 GAGGGAGCAAGATCGAAGCC 60.532 60.000 0.00 0.00 0.00 4.35
3062 3184 0.531753 GGAGGGAGCAAGATCGAAGC 60.532 60.000 0.00 0.00 0.00 3.86
3063 3185 0.249238 CGGAGGGAGCAAGATCGAAG 60.249 60.000 0.00 0.00 0.00 3.79
3064 3186 0.970937 ACGGAGGGAGCAAGATCGAA 60.971 55.000 0.00 0.00 0.00 3.71
3065 3187 1.379977 ACGGAGGGAGCAAGATCGA 60.380 57.895 0.00 0.00 0.00 3.59
3066 3188 1.066587 GACGGAGGGAGCAAGATCG 59.933 63.158 0.00 0.00 0.00 3.69
3067 3189 1.443828 GGACGGAGGGAGCAAGATC 59.556 63.158 0.00 0.00 0.00 2.75
3068 3190 2.427245 CGGACGGAGGGAGCAAGAT 61.427 63.158 0.00 0.00 0.00 2.40
3069 3191 3.068691 CGGACGGAGGGAGCAAGA 61.069 66.667 0.00 0.00 0.00 3.02
3070 3192 2.167398 TTTCGGACGGAGGGAGCAAG 62.167 60.000 0.00 0.00 0.00 4.01
3071 3193 1.760479 TTTTCGGACGGAGGGAGCAA 61.760 55.000 0.00 0.00 0.00 3.91
3072 3194 1.550130 ATTTTCGGACGGAGGGAGCA 61.550 55.000 0.00 0.00 0.00 4.26
3073 3195 0.462789 TATTTTCGGACGGAGGGAGC 59.537 55.000 0.00 0.00 0.00 4.70
3074 3196 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
3075 3197 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.