Multiple sequence alignment - TraesCS4B01G044800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G044800 chr4B 100.000 3214 0 0 1 3214 32277169 32280382 0.000000e+00 5936.0
1 TraesCS4B01G044800 chr4B 89.707 1059 53 17 978 1983 32424957 32423902 0.000000e+00 1301.0
2 TraesCS4B01G044800 chr4B 87.097 155 5 7 796 950 32425091 32424952 9.230000e-36 161.0
3 TraesCS4B01G044800 chr4B 97.701 87 2 0 556 642 32426524 32426438 2.000000e-32 150.0
4 TraesCS4B01G044800 chr4D 87.930 1367 67 36 797 2105 20081601 20082927 0.000000e+00 1520.0
5 TraesCS4B01G044800 chr4D 86.992 1230 77 39 797 1983 20435960 20434771 0.000000e+00 1308.0
6 TraesCS4B01G044800 chr4D 93.556 419 24 2 2105 2522 20083157 20083573 3.520000e-174 621.0
7 TraesCS4B01G044800 chr4D 89.209 278 17 4 411 680 20183809 20184081 5.140000e-88 335.0
8 TraesCS4B01G044800 chr4D 87.748 302 14 10 355 652 20074988 20075270 6.650000e-87 331.0
9 TraesCS4B01G044800 chr4D 82.540 315 17 13 358 651 20437406 20437109 3.200000e-60 243.0
10 TraesCS4B01G044800 chr4D 82.727 220 25 6 570 777 20080391 20080609 1.970000e-42 183.0
11 TraesCS4B01G044800 chr4D 94.643 112 6 0 541 652 20136346 20136457 1.190000e-39 174.0
12 TraesCS4B01G044800 chr4D 87.919 149 6 7 158 296 20044901 20045047 7.130000e-37 165.0
13 TraesCS4B01G044800 chr4D 88.288 111 8 3 418 528 20046588 20046693 9.360000e-26 128.0
14 TraesCS4B01G044800 chr4D 88.732 71 3 1 355 425 20046497 20046562 7.390000e-12 82.4
15 TraesCS4B01G044800 chr4D 97.826 46 1 0 1285 1330 20083369 20083414 2.660000e-11 80.5
16 TraesCS4B01G044800 chr4A 86.901 1252 82 31 797 1983 581201485 581200251 0.000000e+00 1328.0
17 TraesCS4B01G044800 chr4A 82.438 484 61 10 2525 3004 619721111 619720648 4.990000e-108 401.0
18 TraesCS4B01G044800 chr4A 78.487 423 47 17 358 777 581226223 581225842 1.490000e-58 237.0
19 TraesCS4B01G044800 chr4A 95.238 42 2 0 317 358 611413431 611413472 2.070000e-07 67.6
20 TraesCS4B01G044800 chr4A 82.500 80 9 4 2683 2759 567327315 567327238 7.440000e-07 65.8
21 TraesCS4B01G044800 chr7B 93.098 681 35 2 2530 3210 478017737 478017069 0.000000e+00 987.0
22 TraesCS4B01G044800 chr6B 92.890 661 39 4 2525 3184 188575435 188574782 0.000000e+00 953.0
23 TraesCS4B01G044800 chr2B 96.186 236 5 1 541 776 62343620 62343851 1.810000e-102 383.0
24 TraesCS4B01G044800 chr5B 94.937 237 7 2 541 776 693050833 693050601 1.820000e-97 366.0
25 TraesCS4B01G044800 chr5B 86.207 58 6 2 2703 2758 297127852 297127795 9.630000e-06 62.1
26 TraesCS4B01G044800 chr3A 97.619 42 1 0 317 358 659039504 659039463 4.450000e-09 73.1
27 TraesCS4B01G044800 chr3A 95.238 42 2 0 317 358 29422023 29421982 2.070000e-07 67.6
28 TraesCS4B01G044800 chr1D 97.619 42 1 0 317 358 61734366 61734325 4.450000e-09 73.1
29 TraesCS4B01G044800 chr7A 95.238 42 2 0 317 358 507203777 507203736 2.070000e-07 67.6
30 TraesCS4B01G044800 chr7A 86.667 60 5 3 2703 2759 465791284 465791343 2.680000e-06 63.9
31 TraesCS4B01G044800 chr6A 95.238 42 2 0 317 358 44803286 44803327 2.070000e-07 67.6
32 TraesCS4B01G044800 chr3D 95.238 42 2 0 317 358 4319601 4319560 2.070000e-07 67.6
33 TraesCS4B01G044800 chr2A 95.238 42 2 0 317 358 72862794 72862835 2.070000e-07 67.6
34 TraesCS4B01G044800 chr2A 95.238 42 2 0 317 358 354717202 354717243 2.070000e-07 67.6
35 TraesCS4B01G044800 chr1A 86.441 59 6 2 2703 2759 548995955 548995897 2.680000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G044800 chr4B 32277169 32280382 3213 False 5936.000000 5936 100.000000 1 3214 1 chr4B.!!$F1 3213
1 TraesCS4B01G044800 chr4B 32423902 32426524 2622 True 537.333333 1301 91.501667 556 1983 3 chr4B.!!$R1 1427
2 TraesCS4B01G044800 chr4D 20434771 20437406 2635 True 775.500000 1308 84.766000 358 1983 2 chr4D.!!$R1 1625
3 TraesCS4B01G044800 chr4D 20080391 20083573 3182 False 601.125000 1520 90.509750 570 2522 4 chr4D.!!$F5 1952
4 TraesCS4B01G044800 chr4A 581200251 581201485 1234 True 1328.000000 1328 86.901000 797 1983 1 chr4A.!!$R2 1186
5 TraesCS4B01G044800 chr7B 478017069 478017737 668 True 987.000000 987 93.098000 2530 3210 1 chr7B.!!$R1 680
6 TraesCS4B01G044800 chr6B 188574782 188575435 653 True 953.000000 953 92.890000 2525 3184 1 chr6B.!!$R1 659

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
187 188 0.106519 ACAAAGCTCAGGGCACAAGT 60.107 50.0 0.0 0.0 44.79 3.16 F
843 2394 0.112606 TCTCCTTCCGACTCACACCT 59.887 55.0 0.0 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2176 4075 1.302033 CTGACTGAAGCCGGCAACT 60.302 57.895 31.54 12.98 0.00 3.16 R
2486 4386 0.108089 TCTCGACTCTCCCGACTCTG 60.108 60.000 0.00 0.00 32.18 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.625897 TGTGCCGGGGACAGACTG 61.626 66.667 18.10 0.00 0.00 3.51
18 19 3.311110 GTGCCGGGGACAGACTGA 61.311 66.667 14.36 0.00 0.00 3.41
19 20 2.284625 TGCCGGGGACAGACTGAT 60.285 61.111 10.08 0.00 0.00 2.90
20 21 2.187946 GCCGGGGACAGACTGATG 59.812 66.667 10.08 0.00 0.00 3.07
21 22 2.359169 GCCGGGGACAGACTGATGA 61.359 63.158 10.08 0.00 0.00 2.92
22 23 1.819229 CCGGGGACAGACTGATGAG 59.181 63.158 10.08 0.00 0.00 2.90
23 24 0.972983 CCGGGGACAGACTGATGAGT 60.973 60.000 10.08 0.00 33.98 3.41
24 25 0.898320 CGGGGACAGACTGATGAGTT 59.102 55.000 10.08 0.00 30.16 3.01
25 26 1.404717 CGGGGACAGACTGATGAGTTG 60.405 57.143 10.08 0.00 30.16 3.16
26 27 1.677217 GGGGACAGACTGATGAGTTGC 60.677 57.143 10.08 0.00 30.16 4.17
27 28 1.002430 GGGACAGACTGATGAGTTGCA 59.998 52.381 10.08 0.00 30.16 4.08
28 29 2.355513 GGGACAGACTGATGAGTTGCAT 60.356 50.000 10.08 0.00 40.77 3.96
29 30 2.676839 GGACAGACTGATGAGTTGCATG 59.323 50.000 10.08 0.00 37.34 4.06
30 31 2.676839 GACAGACTGATGAGTTGCATGG 59.323 50.000 10.08 0.00 37.34 3.66
31 32 2.303890 ACAGACTGATGAGTTGCATGGA 59.696 45.455 10.08 0.00 37.34 3.41
32 33 3.054582 ACAGACTGATGAGTTGCATGGAT 60.055 43.478 10.08 0.00 37.34 3.41
33 34 3.312697 CAGACTGATGAGTTGCATGGATG 59.687 47.826 0.00 0.00 37.34 3.51
34 35 3.199289 AGACTGATGAGTTGCATGGATGA 59.801 43.478 0.00 0.00 37.34 2.92
35 36 4.135306 GACTGATGAGTTGCATGGATGAT 58.865 43.478 0.00 0.00 37.34 2.45
36 37 4.135306 ACTGATGAGTTGCATGGATGATC 58.865 43.478 0.00 0.00 37.34 2.92
37 38 3.135994 TGATGAGTTGCATGGATGATCG 58.864 45.455 0.00 0.00 37.34 3.69
38 39 1.302366 TGAGTTGCATGGATGATCGC 58.698 50.000 0.00 0.00 0.00 4.58
39 40 0.590195 GAGTTGCATGGATGATCGCC 59.410 55.000 0.00 0.00 0.00 5.54
40 41 0.182061 AGTTGCATGGATGATCGCCT 59.818 50.000 6.06 0.00 0.00 5.52
41 42 0.309922 GTTGCATGGATGATCGCCTG 59.690 55.000 6.06 3.71 0.00 4.85
42 43 0.107066 TTGCATGGATGATCGCCTGT 60.107 50.000 6.06 0.00 0.00 4.00
43 44 0.758123 TGCATGGATGATCGCCTGTA 59.242 50.000 6.06 0.23 0.00 2.74
44 45 1.270465 TGCATGGATGATCGCCTGTAG 60.270 52.381 6.06 0.00 0.00 2.74
45 46 1.436600 CATGGATGATCGCCTGTAGC 58.563 55.000 6.06 0.00 38.52 3.58
46 47 1.001746 CATGGATGATCGCCTGTAGCT 59.998 52.381 6.06 0.00 40.39 3.32
47 48 0.390492 TGGATGATCGCCTGTAGCTG 59.610 55.000 0.00 0.00 40.39 4.24
48 49 0.676184 GGATGATCGCCTGTAGCTGA 59.324 55.000 0.00 0.00 40.39 4.26
49 50 1.604185 GGATGATCGCCTGTAGCTGAC 60.604 57.143 0.00 0.00 40.39 3.51
50 51 1.339610 GATGATCGCCTGTAGCTGACT 59.660 52.381 0.00 0.00 40.39 3.41
51 52 0.457443 TGATCGCCTGTAGCTGACTG 59.543 55.000 0.00 0.00 40.39 3.51
52 53 0.741326 GATCGCCTGTAGCTGACTGA 59.259 55.000 0.00 0.00 40.39 3.41
53 54 1.339610 GATCGCCTGTAGCTGACTGAT 59.660 52.381 0.00 0.00 40.39 2.90
54 55 2.052782 TCGCCTGTAGCTGACTGATA 57.947 50.000 0.00 0.00 40.39 2.15
55 56 2.375146 TCGCCTGTAGCTGACTGATAA 58.625 47.619 0.00 0.00 40.39 1.75
56 57 2.758423 TCGCCTGTAGCTGACTGATAAA 59.242 45.455 0.00 0.00 40.39 1.40
57 58 2.860735 CGCCTGTAGCTGACTGATAAAC 59.139 50.000 0.00 0.00 40.39 2.01
58 59 3.676049 CGCCTGTAGCTGACTGATAAACA 60.676 47.826 0.00 0.00 40.39 2.83
59 60 3.868077 GCCTGTAGCTGACTGATAAACAG 59.132 47.826 0.00 0.00 44.66 3.16
73 74 7.144722 CTGATAAACAGCAAAGTGGAATACA 57.855 36.000 0.00 0.00 39.86 2.29
74 75 7.023575 CTGATAAACAGCAAAGTGGAATACAC 58.976 38.462 0.00 0.00 43.93 2.90
75 76 7.838357 CTGATAAACAGCAAAGTGGAATACACC 60.838 40.741 0.00 0.00 44.30 4.16
122 123 9.562408 TGGAACACACTATTAGTACATTTTCAA 57.438 29.630 0.00 0.00 0.00 2.69
123 124 9.821662 GGAACACACTATTAGTACATTTTCAAC 57.178 33.333 0.00 0.00 0.00 3.18
124 125 9.821662 GAACACACTATTAGTACATTTTCAACC 57.178 33.333 0.00 0.00 0.00 3.77
125 126 8.331730 ACACACTATTAGTACATTTTCAACCC 57.668 34.615 0.00 0.00 0.00 4.11
126 127 7.940137 ACACACTATTAGTACATTTTCAACCCA 59.060 33.333 0.00 0.00 0.00 4.51
127 128 8.956426 CACACTATTAGTACATTTTCAACCCAT 58.044 33.333 0.00 0.00 0.00 4.00
128 129 8.956426 ACACTATTAGTACATTTTCAACCCATG 58.044 33.333 0.00 0.00 0.00 3.66
129 130 7.915397 CACTATTAGTACATTTTCAACCCATGC 59.085 37.037 0.00 0.00 0.00 4.06
130 131 6.849085 ATTAGTACATTTTCAACCCATGCA 57.151 33.333 0.00 0.00 0.00 3.96
131 132 4.789012 AGTACATTTTCAACCCATGCAG 57.211 40.909 0.00 0.00 0.00 4.41
132 133 3.511146 AGTACATTTTCAACCCATGCAGG 59.489 43.478 0.00 0.00 37.03 4.85
133 134 2.607499 ACATTTTCAACCCATGCAGGA 58.393 42.857 0.00 0.00 41.22 3.86
134 135 2.971330 ACATTTTCAACCCATGCAGGAA 59.029 40.909 0.00 0.00 41.22 3.36
135 136 3.390639 ACATTTTCAACCCATGCAGGAAA 59.609 39.130 0.00 0.00 41.22 3.13
136 137 4.141528 ACATTTTCAACCCATGCAGGAAAA 60.142 37.500 0.00 5.87 40.46 2.29
137 138 3.467374 TTTCAACCCATGCAGGAAAAC 57.533 42.857 0.00 0.00 41.22 2.43
138 139 2.380064 TCAACCCATGCAGGAAAACT 57.620 45.000 0.00 0.00 41.22 2.66
139 140 3.517296 TCAACCCATGCAGGAAAACTA 57.483 42.857 0.00 0.00 41.22 2.24
140 141 3.153919 TCAACCCATGCAGGAAAACTAC 58.846 45.455 0.00 0.00 41.22 2.73
141 142 1.821216 ACCCATGCAGGAAAACTACG 58.179 50.000 0.00 0.00 41.22 3.51
142 143 1.073284 ACCCATGCAGGAAAACTACGT 59.927 47.619 0.00 0.00 41.22 3.57
143 144 1.468520 CCCATGCAGGAAAACTACGTG 59.531 52.381 0.00 0.00 41.22 4.49
144 145 2.151202 CCATGCAGGAAAACTACGTGT 58.849 47.619 0.00 0.00 41.22 4.49
145 146 2.095768 CCATGCAGGAAAACTACGTGTG 60.096 50.000 0.00 0.00 41.22 3.82
146 147 2.605837 TGCAGGAAAACTACGTGTGA 57.394 45.000 0.00 0.00 0.00 3.58
147 148 3.120321 TGCAGGAAAACTACGTGTGAT 57.880 42.857 0.00 0.00 0.00 3.06
148 149 3.064207 TGCAGGAAAACTACGTGTGATC 58.936 45.455 0.00 0.00 0.00 2.92
149 150 3.064207 GCAGGAAAACTACGTGTGATCA 58.936 45.455 0.00 0.00 0.00 2.92
150 151 3.496884 GCAGGAAAACTACGTGTGATCAA 59.503 43.478 0.00 0.00 0.00 2.57
151 152 4.024387 GCAGGAAAACTACGTGTGATCAAA 60.024 41.667 0.00 0.00 0.00 2.69
152 153 5.504994 GCAGGAAAACTACGTGTGATCAAAA 60.505 40.000 0.00 0.00 0.00 2.44
153 154 6.668323 CAGGAAAACTACGTGTGATCAAAAT 58.332 36.000 0.00 0.00 0.00 1.82
154 155 7.572353 GCAGGAAAACTACGTGTGATCAAAATA 60.572 37.037 0.00 0.00 0.00 1.40
155 156 7.744715 CAGGAAAACTACGTGTGATCAAAATAC 59.255 37.037 0.00 0.00 0.00 1.89
156 157 7.442969 AGGAAAACTACGTGTGATCAAAATACA 59.557 33.333 0.00 0.00 0.00 2.29
157 158 8.071368 GGAAAACTACGTGTGATCAAAATACAA 58.929 33.333 0.00 0.00 0.00 2.41
158 159 9.440784 GAAAACTACGTGTGATCAAAATACAAA 57.559 29.630 0.00 0.00 0.00 2.83
159 160 9.445786 AAAACTACGTGTGATCAAAATACAAAG 57.554 29.630 0.00 0.00 0.00 2.77
160 161 7.956420 ACTACGTGTGATCAAAATACAAAGA 57.044 32.000 0.00 0.00 0.00 2.52
161 162 8.018677 ACTACGTGTGATCAAAATACAAAGAG 57.981 34.615 0.00 0.00 0.00 2.85
162 163 5.689819 ACGTGTGATCAAAATACAAAGAGC 58.310 37.500 0.00 0.00 0.00 4.09
163 164 4.783036 CGTGTGATCAAAATACAAAGAGCG 59.217 41.667 0.00 0.00 0.00 5.03
164 165 5.088739 GTGTGATCAAAATACAAAGAGCGG 58.911 41.667 0.00 0.00 0.00 5.52
165 166 4.098416 GTGATCAAAATACAAAGAGCGGC 58.902 43.478 0.00 0.00 0.00 6.53
166 167 3.755905 TGATCAAAATACAAAGAGCGGCA 59.244 39.130 1.45 0.00 0.00 5.69
167 168 4.398988 TGATCAAAATACAAAGAGCGGCAT 59.601 37.500 1.45 0.00 0.00 4.40
168 169 5.588246 TGATCAAAATACAAAGAGCGGCATA 59.412 36.000 1.45 0.00 0.00 3.14
169 170 5.229921 TCAAAATACAAAGAGCGGCATAC 57.770 39.130 1.45 0.00 0.00 2.39
170 171 4.697828 TCAAAATACAAAGAGCGGCATACA 59.302 37.500 1.45 0.00 0.00 2.29
171 172 5.182190 TCAAAATACAAAGAGCGGCATACAA 59.818 36.000 1.45 0.00 0.00 2.41
172 173 5.637006 AAATACAAAGAGCGGCATACAAA 57.363 34.783 1.45 0.00 0.00 2.83
173 174 4.882671 ATACAAAGAGCGGCATACAAAG 57.117 40.909 1.45 0.00 0.00 2.77
174 175 1.200020 ACAAAGAGCGGCATACAAAGC 59.800 47.619 1.45 0.00 0.00 3.51
175 176 1.470098 CAAAGAGCGGCATACAAAGCT 59.530 47.619 1.45 0.00 43.33 3.74
178 179 2.772739 AGCGGCATACAAAGCTCAG 58.227 52.632 1.45 0.00 34.48 3.35
179 180 0.745845 AGCGGCATACAAAGCTCAGG 60.746 55.000 1.45 0.00 34.48 3.86
180 181 1.718757 GCGGCATACAAAGCTCAGGG 61.719 60.000 0.00 0.00 0.00 4.45
181 182 1.718757 CGGCATACAAAGCTCAGGGC 61.719 60.000 0.00 0.00 42.19 5.19
182 183 0.680921 GGCATACAAAGCTCAGGGCA 60.681 55.000 0.00 0.00 44.79 5.36
183 184 0.453390 GCATACAAAGCTCAGGGCAC 59.547 55.000 0.00 0.00 44.79 5.01
184 185 1.825090 CATACAAAGCTCAGGGCACA 58.175 50.000 0.00 0.00 44.79 4.57
185 186 2.161855 CATACAAAGCTCAGGGCACAA 58.838 47.619 0.00 0.00 44.79 3.33
186 187 1.896220 TACAAAGCTCAGGGCACAAG 58.104 50.000 0.00 0.00 44.79 3.16
187 188 0.106519 ACAAAGCTCAGGGCACAAGT 60.107 50.000 0.00 0.00 44.79 3.16
188 189 0.313043 CAAAGCTCAGGGCACAAGTG 59.687 55.000 0.00 0.00 44.79 3.16
199 200 3.360886 CACAAGTGCCAAACAACCC 57.639 52.632 0.00 0.00 0.00 4.11
200 201 0.534412 CACAAGTGCCAAACAACCCA 59.466 50.000 0.00 0.00 0.00 4.51
201 202 0.823460 ACAAGTGCCAAACAACCCAG 59.177 50.000 0.00 0.00 0.00 4.45
202 203 1.110442 CAAGTGCCAAACAACCCAGA 58.890 50.000 0.00 0.00 0.00 3.86
203 204 1.480137 CAAGTGCCAAACAACCCAGAA 59.520 47.619 0.00 0.00 0.00 3.02
204 205 1.402787 AGTGCCAAACAACCCAGAAG 58.597 50.000 0.00 0.00 0.00 2.85
205 206 0.389025 GTGCCAAACAACCCAGAAGG 59.611 55.000 0.00 0.00 43.78 3.46
216 217 3.839979 CCAGAAGGGACCAACCAAA 57.160 52.632 0.00 0.00 40.01 3.28
217 218 2.080654 CCAGAAGGGACCAACCAAAA 57.919 50.000 0.00 0.00 40.01 2.44
218 219 2.393646 CCAGAAGGGACCAACCAAAAA 58.606 47.619 0.00 0.00 40.01 1.94
219 220 2.972021 CCAGAAGGGACCAACCAAAAAT 59.028 45.455 0.00 0.00 40.01 1.82
220 221 3.006859 CCAGAAGGGACCAACCAAAAATC 59.993 47.826 0.00 0.00 40.01 2.17
221 222 2.890945 AGAAGGGACCAACCAAAAATCG 59.109 45.455 0.00 0.00 41.20 3.34
222 223 0.966179 AGGGACCAACCAAAAATCGC 59.034 50.000 0.00 0.00 41.20 4.58
223 224 0.676736 GGGACCAACCAAAAATCGCA 59.323 50.000 0.00 0.00 41.20 5.10
224 225 1.604438 GGGACCAACCAAAAATCGCAC 60.604 52.381 0.00 0.00 41.20 5.34
225 226 1.067821 GGACCAACCAAAAATCGCACA 59.932 47.619 0.00 0.00 38.79 4.57
226 227 2.482142 GGACCAACCAAAAATCGCACAA 60.482 45.455 0.00 0.00 38.79 3.33
227 228 2.794350 GACCAACCAAAAATCGCACAAG 59.206 45.455 0.00 0.00 0.00 3.16
228 229 2.167487 ACCAACCAAAAATCGCACAAGT 59.833 40.909 0.00 0.00 0.00 3.16
229 230 2.539274 CCAACCAAAAATCGCACAAGTG 59.461 45.455 0.00 0.00 0.00 3.16
230 231 3.443037 CAACCAAAAATCGCACAAGTGA 58.557 40.909 4.04 0.00 38.88 3.41
231 232 3.078594 ACCAAAAATCGCACAAGTGAC 57.921 42.857 4.04 0.00 37.04 3.67
232 233 2.687935 ACCAAAAATCGCACAAGTGACT 59.312 40.909 4.04 0.00 37.04 3.41
233 234 3.044986 CCAAAAATCGCACAAGTGACTG 58.955 45.455 4.04 0.00 37.04 3.51
234 235 3.243035 CCAAAAATCGCACAAGTGACTGA 60.243 43.478 4.04 0.00 37.04 3.41
235 236 4.350346 CAAAAATCGCACAAGTGACTGAA 58.650 39.130 4.04 0.00 37.04 3.02
236 237 3.609103 AAATCGCACAAGTGACTGAAC 57.391 42.857 4.04 0.00 37.04 3.18
237 238 2.238942 ATCGCACAAGTGACTGAACA 57.761 45.000 4.04 0.00 37.04 3.18
238 239 2.238942 TCGCACAAGTGACTGAACAT 57.761 45.000 4.04 0.00 0.00 2.71
239 240 2.560504 TCGCACAAGTGACTGAACATT 58.439 42.857 4.04 0.00 0.00 2.71
240 241 3.723260 TCGCACAAGTGACTGAACATTA 58.277 40.909 4.04 0.00 0.00 1.90
241 242 3.493129 TCGCACAAGTGACTGAACATTAC 59.507 43.478 4.04 0.00 0.00 1.89
242 243 3.247411 CGCACAAGTGACTGAACATTACA 59.753 43.478 4.04 0.00 0.00 2.41
243 244 4.083855 CGCACAAGTGACTGAACATTACAT 60.084 41.667 4.04 0.00 0.00 2.29
244 245 5.149273 GCACAAGTGACTGAACATTACATG 58.851 41.667 4.04 0.00 0.00 3.21
245 246 5.149273 CACAAGTGACTGAACATTACATGC 58.851 41.667 0.00 0.00 0.00 4.06
246 247 4.216257 ACAAGTGACTGAACATTACATGCC 59.784 41.667 0.00 0.00 0.00 4.40
247 248 4.292186 AGTGACTGAACATTACATGCCT 57.708 40.909 0.00 0.00 0.00 4.75
248 249 5.420725 AGTGACTGAACATTACATGCCTA 57.579 39.130 0.00 0.00 0.00 3.93
249 250 5.994250 AGTGACTGAACATTACATGCCTAT 58.006 37.500 0.00 0.00 0.00 2.57
250 251 6.418101 AGTGACTGAACATTACATGCCTATT 58.582 36.000 0.00 0.00 0.00 1.73
251 252 6.886459 AGTGACTGAACATTACATGCCTATTT 59.114 34.615 0.00 0.00 0.00 1.40
252 253 7.394359 AGTGACTGAACATTACATGCCTATTTT 59.606 33.333 0.00 0.00 0.00 1.82
253 254 8.028938 GTGACTGAACATTACATGCCTATTTTT 58.971 33.333 0.00 0.00 0.00 1.94
254 255 8.243426 TGACTGAACATTACATGCCTATTTTTC 58.757 33.333 0.00 0.00 0.00 2.29
255 256 8.353423 ACTGAACATTACATGCCTATTTTTCT 57.647 30.769 0.00 0.00 0.00 2.52
256 257 8.462016 ACTGAACATTACATGCCTATTTTTCTC 58.538 33.333 0.00 0.00 0.00 2.87
257 258 8.579850 TGAACATTACATGCCTATTTTTCTCT 57.420 30.769 0.00 0.00 0.00 3.10
258 259 8.677300 TGAACATTACATGCCTATTTTTCTCTC 58.323 33.333 0.00 0.00 0.00 3.20
259 260 8.814038 AACATTACATGCCTATTTTTCTCTCT 57.186 30.769 0.00 0.00 0.00 3.10
260 261 8.814038 ACATTACATGCCTATTTTTCTCTCTT 57.186 30.769 0.00 0.00 0.00 2.85
261 262 8.897752 ACATTACATGCCTATTTTTCTCTCTTC 58.102 33.333 0.00 0.00 0.00 2.87
262 263 9.118300 CATTACATGCCTATTTTTCTCTCTTCT 57.882 33.333 0.00 0.00 0.00 2.85
263 264 9.692325 ATTACATGCCTATTTTTCTCTCTTCTT 57.308 29.630 0.00 0.00 0.00 2.52
264 265 7.388460 ACATGCCTATTTTTCTCTCTTCTTG 57.612 36.000 0.00 0.00 0.00 3.02
265 266 7.170965 ACATGCCTATTTTTCTCTCTTCTTGA 58.829 34.615 0.00 0.00 0.00 3.02
266 267 7.667219 ACATGCCTATTTTTCTCTCTTCTTGAA 59.333 33.333 0.00 0.00 0.00 2.69
267 268 7.440523 TGCCTATTTTTCTCTCTTCTTGAAC 57.559 36.000 0.00 0.00 0.00 3.18
268 269 7.227156 TGCCTATTTTTCTCTCTTCTTGAACT 58.773 34.615 0.00 0.00 0.00 3.01
269 270 8.375506 TGCCTATTTTTCTCTCTTCTTGAACTA 58.624 33.333 0.00 0.00 0.00 2.24
270 271 8.661257 GCCTATTTTTCTCTCTTCTTGAACTAC 58.339 37.037 0.00 0.00 0.00 2.73
271 272 9.712305 CCTATTTTTCTCTCTTCTTGAACTACA 57.288 33.333 0.00 0.00 0.00 2.74
273 274 7.464830 TTTTTCTCTCTTCTTGAACTACACG 57.535 36.000 0.00 0.00 0.00 4.49
274 275 5.769484 TTCTCTCTTCTTGAACTACACGT 57.231 39.130 0.00 0.00 0.00 4.49
275 276 5.359716 TCTCTCTTCTTGAACTACACGTC 57.640 43.478 0.00 0.00 0.00 4.34
276 277 5.064558 TCTCTCTTCTTGAACTACACGTCT 58.935 41.667 0.00 0.00 0.00 4.18
277 278 6.228995 TCTCTCTTCTTGAACTACACGTCTA 58.771 40.000 0.00 0.00 0.00 2.59
278 279 6.879993 TCTCTCTTCTTGAACTACACGTCTAT 59.120 38.462 0.00 0.00 0.00 1.98
279 280 8.039538 TCTCTCTTCTTGAACTACACGTCTATA 58.960 37.037 0.00 0.00 0.00 1.31
280 281 8.734218 TCTCTTCTTGAACTACACGTCTATAT 57.266 34.615 0.00 0.00 0.00 0.86
281 282 9.828039 TCTCTTCTTGAACTACACGTCTATATA 57.172 33.333 0.00 0.00 0.00 0.86
282 283 9.866936 CTCTTCTTGAACTACACGTCTATATAC 57.133 37.037 0.00 0.00 0.00 1.47
283 284 9.610705 TCTTCTTGAACTACACGTCTATATACT 57.389 33.333 0.00 0.00 0.00 2.12
295 296 9.031360 ACACGTCTATATACTTAATTGCTTGTG 57.969 33.333 0.00 0.00 0.00 3.33
296 297 8.004344 CACGTCTATATACTTAATTGCTTGTGC 58.996 37.037 0.00 0.00 40.20 4.57
297 298 7.926555 ACGTCTATATACTTAATTGCTTGTGCT 59.073 33.333 0.00 0.00 40.48 4.40
298 299 9.406828 CGTCTATATACTTAATTGCTTGTGCTA 57.593 33.333 0.00 0.00 40.48 3.49
305 306 9.751542 ATACTTAATTGCTTGTGCTACTAGTAG 57.248 33.333 23.25 23.25 40.48 2.57
321 322 8.638685 CTACTAGTAGCTTATCGATCTACTCC 57.361 42.308 21.92 3.11 41.29 3.85
322 323 6.408869 ACTAGTAGCTTATCGATCTACTCCC 58.591 44.000 21.92 6.01 41.29 4.30
323 324 5.508280 AGTAGCTTATCGATCTACTCCCT 57.492 43.478 15.85 4.49 38.81 4.20
324 325 5.493809 AGTAGCTTATCGATCTACTCCCTC 58.506 45.833 15.85 0.00 38.81 4.30
325 326 3.692690 AGCTTATCGATCTACTCCCTCC 58.307 50.000 0.00 0.00 0.00 4.30
326 327 2.420722 GCTTATCGATCTACTCCCTCCG 59.579 54.545 0.00 0.00 0.00 4.63
327 328 3.677190 CTTATCGATCTACTCCCTCCGT 58.323 50.000 0.00 0.00 0.00 4.69
328 329 2.660670 ATCGATCTACTCCCTCCGTT 57.339 50.000 0.00 0.00 0.00 4.44
329 330 2.431954 TCGATCTACTCCCTCCGTTT 57.568 50.000 0.00 0.00 0.00 3.60
330 331 2.295885 TCGATCTACTCCCTCCGTTTC 58.704 52.381 0.00 0.00 0.00 2.78
331 332 2.022195 CGATCTACTCCCTCCGTTTCA 58.978 52.381 0.00 0.00 0.00 2.69
332 333 2.426024 CGATCTACTCCCTCCGTTTCAA 59.574 50.000 0.00 0.00 0.00 2.69
333 334 3.119245 CGATCTACTCCCTCCGTTTCAAA 60.119 47.826 0.00 0.00 0.00 2.69
334 335 4.441634 CGATCTACTCCCTCCGTTTCAAAT 60.442 45.833 0.00 0.00 0.00 2.32
335 336 4.903045 TCTACTCCCTCCGTTTCAAATT 57.097 40.909 0.00 0.00 0.00 1.82
336 337 6.555463 ATCTACTCCCTCCGTTTCAAATTA 57.445 37.500 0.00 0.00 0.00 1.40
337 338 5.727434 TCTACTCCCTCCGTTTCAAATTAC 58.273 41.667 0.00 0.00 0.00 1.89
338 339 4.635699 ACTCCCTCCGTTTCAAATTACT 57.364 40.909 0.00 0.00 0.00 2.24
339 340 4.324267 ACTCCCTCCGTTTCAAATTACTG 58.676 43.478 0.00 0.00 0.00 2.74
340 341 3.681593 TCCCTCCGTTTCAAATTACTGG 58.318 45.455 0.00 0.00 0.00 4.00
341 342 3.073356 TCCCTCCGTTTCAAATTACTGGT 59.927 43.478 0.00 0.00 0.00 4.00
342 343 3.439129 CCCTCCGTTTCAAATTACTGGTC 59.561 47.826 0.00 0.00 0.00 4.02
343 344 3.124636 CCTCCGTTTCAAATTACTGGTCG 59.875 47.826 0.00 0.00 0.00 4.79
344 345 3.731089 TCCGTTTCAAATTACTGGTCGT 58.269 40.909 0.00 0.00 0.00 4.34
345 346 3.495377 TCCGTTTCAAATTACTGGTCGTG 59.505 43.478 0.00 0.00 0.00 4.35
346 347 3.364565 CCGTTTCAAATTACTGGTCGTGG 60.365 47.826 0.00 0.00 0.00 4.94
347 348 3.249080 CGTTTCAAATTACTGGTCGTGGT 59.751 43.478 0.00 0.00 0.00 4.16
348 349 4.260866 CGTTTCAAATTACTGGTCGTGGTT 60.261 41.667 0.00 0.00 0.00 3.67
349 350 5.584442 GTTTCAAATTACTGGTCGTGGTTT 58.416 37.500 0.00 0.00 0.00 3.27
350 351 5.838531 TTCAAATTACTGGTCGTGGTTTT 57.161 34.783 0.00 0.00 0.00 2.43
351 352 6.939132 TTCAAATTACTGGTCGTGGTTTTA 57.061 33.333 0.00 0.00 0.00 1.52
352 353 6.548441 TCAAATTACTGGTCGTGGTTTTAG 57.452 37.500 0.00 0.00 0.00 1.85
353 354 6.056884 TCAAATTACTGGTCGTGGTTTTAGT 58.943 36.000 0.00 0.00 0.00 2.24
354 355 6.543100 TCAAATTACTGGTCGTGGTTTTAGTT 59.457 34.615 0.00 0.00 0.00 2.24
355 356 6.549912 AATTACTGGTCGTGGTTTTAGTTC 57.450 37.500 0.00 0.00 0.00 3.01
356 357 3.547054 ACTGGTCGTGGTTTTAGTTCA 57.453 42.857 0.00 0.00 0.00 3.18
363 364 4.514066 GTCGTGGTTTTAGTTCAAGATGGT 59.486 41.667 0.00 0.00 0.00 3.55
404 405 4.039730 TGAGAAGAGAAAGACTTGTCAGGG 59.960 45.833 0.00 0.00 40.76 4.45
412 413 1.071385 AGACTTGTCAGGGCTTGTGAG 59.929 52.381 3.49 0.00 0.00 3.51
413 414 0.839946 ACTTGTCAGGGCTTGTGAGT 59.160 50.000 0.00 0.00 0.00 3.41
414 415 1.212935 ACTTGTCAGGGCTTGTGAGTT 59.787 47.619 0.00 0.00 0.00 3.01
415 416 1.605710 CTTGTCAGGGCTTGTGAGTTG 59.394 52.381 0.00 0.00 0.00 3.16
417 418 0.947244 GTCAGGGCTTGTGAGTTGTG 59.053 55.000 0.00 0.00 0.00 3.33
418 419 0.836606 TCAGGGCTTGTGAGTTGTGA 59.163 50.000 0.00 0.00 0.00 3.58
419 420 0.947244 CAGGGCTTGTGAGTTGTGAC 59.053 55.000 0.00 0.00 0.00 3.67
420 421 0.179018 AGGGCTTGTGAGTTGTGACC 60.179 55.000 0.00 0.00 0.00 4.02
421 422 1.507141 GGGCTTGTGAGTTGTGACCG 61.507 60.000 0.00 0.00 0.00 4.79
422 423 0.814010 GGCTTGTGAGTTGTGACCGT 60.814 55.000 0.00 0.00 0.00 4.83
423 424 1.014352 GCTTGTGAGTTGTGACCGTT 58.986 50.000 0.00 0.00 0.00 4.44
424 425 1.400494 GCTTGTGAGTTGTGACCGTTT 59.600 47.619 0.00 0.00 0.00 3.60
425 426 2.538939 GCTTGTGAGTTGTGACCGTTTC 60.539 50.000 0.00 0.00 0.00 2.78
426 427 1.282817 TGTGAGTTGTGACCGTTTCG 58.717 50.000 0.00 0.00 0.00 3.46
454 455 4.058817 GAGAAGTTTGACTTGTGACCGAT 58.941 43.478 0.00 0.00 38.80 4.18
460 461 2.489971 TGACTTGTGACCGATGGTTTC 58.510 47.619 0.00 0.00 35.25 2.78
472 473 2.989253 GGTTTCCGGCCACTTGGG 60.989 66.667 2.24 0.00 40.85 4.12
473 474 2.203437 GTTTCCGGCCACTTGGGT 60.203 61.111 2.24 0.00 39.65 4.51
474 475 2.114411 TTTCCGGCCACTTGGGTC 59.886 61.111 2.24 0.00 39.65 4.46
475 476 2.457323 TTTCCGGCCACTTGGGTCT 61.457 57.895 2.24 0.00 39.98 3.85
482 483 1.376466 CCACTTGGGTCTGTCTGGG 59.624 63.158 0.00 0.00 0.00 4.45
495 496 4.473520 CTGGGCCGGATCAACGCT 62.474 66.667 6.48 0.00 0.00 5.07
504 505 0.179084 GGATCAACGCTCCGAATGGA 60.179 55.000 0.00 0.00 43.88 3.41
532 534 6.344500 ACACTCTCTTATTATCAGCAACAGG 58.656 40.000 0.00 0.00 0.00 4.00
533 535 6.155221 ACACTCTCTTATTATCAGCAACAGGA 59.845 38.462 0.00 0.00 0.00 3.86
549 551 2.435938 GAATCAGGCGCACCGGAA 60.436 61.111 9.46 0.00 43.80 4.30
663 698 1.406970 GCTTGTGCGAGCGAGACTAC 61.407 60.000 0.00 0.00 32.23 2.73
675 724 1.670791 GAGACTACTCGTGGAGGAGG 58.329 60.000 9.54 0.00 44.45 4.30
676 725 1.209990 GAGACTACTCGTGGAGGAGGA 59.790 57.143 9.54 0.00 44.45 3.71
718 784 8.356657 TGTCTCACAAGTTGAAGAAAAGAAAAA 58.643 29.630 10.54 0.00 32.21 1.94
771 864 1.798735 CTCATGCACCCAAGCTTCG 59.201 57.895 0.00 0.00 34.99 3.79
777 872 1.337447 TGCACCCAAGCTTCGTAGTAC 60.337 52.381 0.00 0.00 34.99 2.73
778 873 1.337447 GCACCCAAGCTTCGTAGTACA 60.337 52.381 0.00 0.00 0.00 2.90
780 875 2.993899 CACCCAAGCTTCGTAGTACAAG 59.006 50.000 0.00 4.89 0.00 3.16
781 876 2.631545 ACCCAAGCTTCGTAGTACAAGT 59.368 45.455 0.00 0.00 0.00 3.16
782 877 3.070590 ACCCAAGCTTCGTAGTACAAGTT 59.929 43.478 0.00 0.00 0.00 2.66
784 879 4.304110 CCAAGCTTCGTAGTACAAGTTGA 58.696 43.478 10.54 0.00 0.00 3.18
789 884 6.278363 AGCTTCGTAGTACAAGTTGAAGAAA 58.722 36.000 10.54 0.00 35.92 2.52
791 886 7.042658 AGCTTCGTAGTACAAGTTGAAGAAAAG 60.043 37.037 10.54 5.55 35.92 2.27
792 887 6.520792 TCGTAGTACAAGTTGAAGAAAAGC 57.479 37.500 10.54 0.00 0.00 3.51
793 888 6.044046 TCGTAGTACAAGTTGAAGAAAAGCA 58.956 36.000 10.54 0.00 0.00 3.91
841 2392 2.814280 TTTCTCCTTCCGACTCACAC 57.186 50.000 0.00 0.00 0.00 3.82
842 2393 0.966920 TTCTCCTTCCGACTCACACC 59.033 55.000 0.00 0.00 0.00 4.16
843 2394 0.112606 TCTCCTTCCGACTCACACCT 59.887 55.000 0.00 0.00 0.00 4.00
844 2395 0.528470 CTCCTTCCGACTCACACCTC 59.472 60.000 0.00 0.00 0.00 3.85
845 2396 0.898789 TCCTTCCGACTCACACCTCC 60.899 60.000 0.00 0.00 0.00 4.30
950 2530 4.842292 GATCAGCCATCGTCAGCA 57.158 55.556 0.00 0.00 0.00 4.41
951 2531 2.602738 GATCAGCCATCGTCAGCAG 58.397 57.895 0.00 0.00 0.00 4.24
954 2534 2.435586 AGCCATCGTCAGCAGCAC 60.436 61.111 0.00 0.00 0.00 4.40
956 2536 3.857854 CCATCGTCAGCAGCACGC 61.858 66.667 0.00 0.00 42.91 5.34
1506 3130 2.270205 CGCCAGATGGTGCTCCTT 59.730 61.111 6.34 0.00 39.04 3.36
1816 3467 1.991099 GAGCTCCGACGACAGGTACC 61.991 65.000 2.73 2.73 0.00 3.34
1885 3548 2.125147 CCGATCGCAAGGCCTTCA 60.125 61.111 17.29 2.42 38.47 3.02
2024 3693 3.247173 GCGGCTGAAGCAGATATATATGC 59.753 47.826 21.99 21.99 44.83 3.14
2025 3694 4.436332 CGGCTGAAGCAGATATATATGCA 58.564 43.478 28.78 11.78 46.75 3.96
2026 3695 5.055144 CGGCTGAAGCAGATATATATGCAT 58.945 41.667 28.78 20.21 46.75 3.96
2027 3696 5.050295 CGGCTGAAGCAGATATATATGCATG 60.050 44.000 28.78 17.67 46.75 4.06
2054 3723 1.927174 GTAGCATGCAGTACGTGAAGG 59.073 52.381 21.98 0.00 37.49 3.46
2089 3758 1.715519 GATTTGTGTGCGTGCATCAAC 59.284 47.619 12.45 6.62 0.00 3.18
2130 4029 3.586961 CGCGATCGAGGAGGAGCA 61.587 66.667 21.57 0.00 38.10 4.26
2153 4052 3.599285 GACGTGGGCGGTGGATTCA 62.599 63.158 0.00 0.00 43.45 2.57
2216 4115 1.813786 ACGGACAGAAGACTCTAGCAC 59.186 52.381 0.00 0.00 0.00 4.40
2217 4116 1.813178 CGGACAGAAGACTCTAGCACA 59.187 52.381 0.00 0.00 0.00 4.57
2256 4155 1.678101 GGCCACAGCAGATATGGTTTC 59.322 52.381 0.00 0.00 42.56 2.78
2258 4157 3.433598 GGCCACAGCAGATATGGTTTCTA 60.434 47.826 0.00 0.00 42.56 2.10
2383 4283 4.647615 CTATGCTACGCGGCCGCT 62.648 66.667 43.60 32.25 39.32 5.52
2431 4331 3.661131 GCCCGCGCTCGAGATAGA 61.661 66.667 18.75 0.00 38.10 1.98
2514 4414 5.469421 GTCGGGAGAGTCGAGATTTATAGAA 59.531 44.000 0.00 0.00 41.26 2.10
2517 4417 6.016943 CGGGAGAGTCGAGATTTATAGAAAGT 60.017 42.308 0.00 0.00 0.00 2.66
2522 4422 8.908903 AGAGTCGAGATTTATAGAAAGTGACAT 58.091 33.333 0.00 0.00 0.00 3.06
2523 4423 9.176181 GAGTCGAGATTTATAGAAAGTGACATC 57.824 37.037 0.00 0.00 0.00 3.06
2548 4448 7.872993 TCTCTATTATTAAAGGACAATCTGCCG 59.127 37.037 0.00 0.00 0.00 5.69
2589 4489 3.373846 CCCTCCCCTCCCCCTACA 61.374 72.222 0.00 0.00 0.00 2.74
2857 4757 2.515901 GCCCACGCCCTCCATTAT 59.484 61.111 0.00 0.00 0.00 1.28
2874 4774 1.474330 TATCTTGCTGGAGCTCGACA 58.526 50.000 7.83 2.55 42.66 4.35
2992 4892 0.261696 TCGTGATCCTCTCCCATGGA 59.738 55.000 15.22 0.00 36.72 3.41
3012 4912 1.224120 AGCCTCCTCCATGAATAGGGA 59.776 52.381 0.00 0.00 35.10 4.20
3044 4944 4.871557 TGTGTTTTCCGGATCCTATTTACG 59.128 41.667 4.15 0.00 0.00 3.18
3077 4977 2.013563 GCAATGCAGACCTCCAATCGA 61.014 52.381 0.00 0.00 0.00 3.59
3106 5006 1.673626 GGATCGCCCAAACGTCACTTA 60.674 52.381 0.00 0.00 34.14 2.24
3124 5024 0.106167 TACGGCCAGTAGCAGAGGAT 60.106 55.000 2.24 0.00 46.50 3.24
3185 5085 1.615262 CACCTCCCCCTTCCAATCC 59.385 63.158 0.00 0.00 0.00 3.01
3210 5110 2.159819 CTCCCCACACTCGTCACCAG 62.160 65.000 0.00 0.00 0.00 4.00
3211 5111 2.357517 CCCACACTCGTCACCAGC 60.358 66.667 0.00 0.00 0.00 4.85
3212 5112 2.421314 CCACACTCGTCACCAGCA 59.579 61.111 0.00 0.00 0.00 4.41
3213 5113 1.665916 CCACACTCGTCACCAGCAG 60.666 63.158 0.00 0.00 0.00 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.625897 CAGTCTGTCCCCGGCACA 61.626 66.667 0.00 0.00 0.00 4.57
1 2 2.660064 ATCAGTCTGTCCCCGGCAC 61.660 63.158 0.00 0.00 0.00 5.01
2 3 2.284625 ATCAGTCTGTCCCCGGCA 60.285 61.111 0.00 0.00 0.00 5.69
4 5 0.972983 ACTCATCAGTCTGTCCCCGG 60.973 60.000 0.00 0.00 0.00 5.73
5 6 0.898320 AACTCATCAGTCTGTCCCCG 59.102 55.000 0.00 0.00 29.93 5.73
6 7 1.677217 GCAACTCATCAGTCTGTCCCC 60.677 57.143 0.00 0.00 29.93 4.81
7 8 1.002430 TGCAACTCATCAGTCTGTCCC 59.998 52.381 0.00 0.00 29.93 4.46
8 9 2.462456 TGCAACTCATCAGTCTGTCC 57.538 50.000 0.00 0.00 29.93 4.02
9 10 2.676839 CCATGCAACTCATCAGTCTGTC 59.323 50.000 0.00 0.00 31.79 3.51
10 11 2.303890 TCCATGCAACTCATCAGTCTGT 59.696 45.455 0.00 0.00 31.79 3.41
11 12 2.981898 TCCATGCAACTCATCAGTCTG 58.018 47.619 0.00 0.00 31.79 3.51
12 13 3.199289 TCATCCATGCAACTCATCAGTCT 59.801 43.478 0.00 0.00 31.79 3.24
13 14 3.538591 TCATCCATGCAACTCATCAGTC 58.461 45.455 0.00 0.00 31.79 3.51
14 15 3.639672 TCATCCATGCAACTCATCAGT 57.360 42.857 0.00 0.00 31.79 3.41
15 16 3.186613 CGATCATCCATGCAACTCATCAG 59.813 47.826 0.00 0.00 31.79 2.90
16 17 3.135994 CGATCATCCATGCAACTCATCA 58.864 45.455 0.00 0.00 31.79 3.07
17 18 2.095869 GCGATCATCCATGCAACTCATC 60.096 50.000 0.00 0.00 31.79 2.92
18 19 1.878088 GCGATCATCCATGCAACTCAT 59.122 47.619 0.00 0.00 35.31 2.90
19 20 1.302366 GCGATCATCCATGCAACTCA 58.698 50.000 0.00 0.00 0.00 3.41
20 21 0.590195 GGCGATCATCCATGCAACTC 59.410 55.000 0.00 0.00 0.00 3.01
21 22 0.182061 AGGCGATCATCCATGCAACT 59.818 50.000 0.00 0.00 0.00 3.16
22 23 0.309922 CAGGCGATCATCCATGCAAC 59.690 55.000 0.00 0.00 0.00 4.17
23 24 0.107066 ACAGGCGATCATCCATGCAA 60.107 50.000 0.00 0.00 0.00 4.08
24 25 0.758123 TACAGGCGATCATCCATGCA 59.242 50.000 0.00 0.00 0.00 3.96
25 26 1.436600 CTACAGGCGATCATCCATGC 58.563 55.000 4.09 0.00 0.00 4.06
26 27 1.436600 GCTACAGGCGATCATCCATG 58.563 55.000 4.09 0.00 0.00 3.66
27 28 3.923354 GCTACAGGCGATCATCCAT 57.077 52.632 4.09 0.00 0.00 3.41
34 35 8.828863 CTGTTTATCAGTCAGCTACAGGCGAT 62.829 46.154 0.00 0.00 41.41 4.58
35 36 7.619205 CTGTTTATCAGTCAGCTACAGGCGA 62.619 48.000 0.00 0.00 41.41 5.54
36 37 5.493353 CTGTTTATCAGTCAGCTACAGGCG 61.493 50.000 0.00 0.00 41.41 5.52
37 38 3.861840 TGTTTATCAGTCAGCTACAGGC 58.138 45.455 0.00 0.00 42.19 4.85
45 46 4.756642 TCCACTTTGCTGTTTATCAGTCAG 59.243 41.667 0.00 0.00 45.23 3.51
46 47 4.713553 TCCACTTTGCTGTTTATCAGTCA 58.286 39.130 0.00 0.00 45.23 3.41
47 48 5.689383 TTCCACTTTGCTGTTTATCAGTC 57.311 39.130 0.00 0.00 45.23 3.51
48 49 6.714810 TGTATTCCACTTTGCTGTTTATCAGT 59.285 34.615 0.00 0.00 45.23 3.41
49 50 7.023575 GTGTATTCCACTTTGCTGTTTATCAG 58.976 38.462 0.00 0.00 42.53 2.90
50 51 6.072175 GGTGTATTCCACTTTGCTGTTTATCA 60.072 38.462 0.00 0.00 43.94 2.15
51 52 6.151144 AGGTGTATTCCACTTTGCTGTTTATC 59.849 38.462 0.00 0.00 43.94 1.75
52 53 6.010219 AGGTGTATTCCACTTTGCTGTTTAT 58.990 36.000 0.00 0.00 43.94 1.40
53 54 5.381757 AGGTGTATTCCACTTTGCTGTTTA 58.618 37.500 0.00 0.00 43.94 2.01
54 55 4.215109 AGGTGTATTCCACTTTGCTGTTT 58.785 39.130 0.00 0.00 43.94 2.83
55 56 3.821033 GAGGTGTATTCCACTTTGCTGTT 59.179 43.478 0.00 0.00 43.94 3.16
56 57 3.073062 AGAGGTGTATTCCACTTTGCTGT 59.927 43.478 0.00 0.00 43.94 4.40
57 58 3.679389 AGAGGTGTATTCCACTTTGCTG 58.321 45.455 0.00 0.00 43.94 4.41
58 59 4.373156 AAGAGGTGTATTCCACTTTGCT 57.627 40.909 0.00 0.00 43.94 3.91
59 60 5.453567 AAAAGAGGTGTATTCCACTTTGC 57.546 39.130 8.40 0.00 43.67 3.68
95 96 8.995220 TGAAAATGTACTAATAGTGTGTTCCAC 58.005 33.333 2.68 0.00 44.89 4.02
96 97 9.562408 TTGAAAATGTACTAATAGTGTGTTCCA 57.438 29.630 2.68 0.00 0.00 3.53
97 98 9.821662 GTTGAAAATGTACTAATAGTGTGTTCC 57.178 33.333 2.68 0.00 0.00 3.62
98 99 9.821662 GGTTGAAAATGTACTAATAGTGTGTTC 57.178 33.333 2.68 1.62 0.00 3.18
99 100 8.789762 GGGTTGAAAATGTACTAATAGTGTGTT 58.210 33.333 2.68 0.00 0.00 3.32
100 101 7.940137 TGGGTTGAAAATGTACTAATAGTGTGT 59.060 33.333 2.68 0.00 0.00 3.72
101 102 8.330466 TGGGTTGAAAATGTACTAATAGTGTG 57.670 34.615 2.68 0.00 0.00 3.82
102 103 8.956426 CATGGGTTGAAAATGTACTAATAGTGT 58.044 33.333 2.68 0.00 0.00 3.55
103 104 7.915397 GCATGGGTTGAAAATGTACTAATAGTG 59.085 37.037 2.68 0.00 0.00 2.74
104 105 7.613801 TGCATGGGTTGAAAATGTACTAATAGT 59.386 33.333 0.00 0.00 0.00 2.12
105 106 7.995289 TGCATGGGTTGAAAATGTACTAATAG 58.005 34.615 0.00 0.00 0.00 1.73
106 107 7.068103 CCTGCATGGGTTGAAAATGTACTAATA 59.932 37.037 0.00 0.00 0.00 0.98
107 108 6.127366 CCTGCATGGGTTGAAAATGTACTAAT 60.127 38.462 0.00 0.00 0.00 1.73
108 109 5.184864 CCTGCATGGGTTGAAAATGTACTAA 59.815 40.000 0.00 0.00 0.00 2.24
109 110 4.704540 CCTGCATGGGTTGAAAATGTACTA 59.295 41.667 0.00 0.00 0.00 1.82
110 111 3.511146 CCTGCATGGGTTGAAAATGTACT 59.489 43.478 0.00 0.00 0.00 2.73
111 112 3.509575 TCCTGCATGGGTTGAAAATGTAC 59.490 43.478 0.00 0.00 36.20 2.90
112 113 3.772387 TCCTGCATGGGTTGAAAATGTA 58.228 40.909 0.00 0.00 36.20 2.29
113 114 2.607499 TCCTGCATGGGTTGAAAATGT 58.393 42.857 0.00 0.00 36.20 2.71
114 115 3.681593 TTCCTGCATGGGTTGAAAATG 57.318 42.857 0.00 0.00 36.20 2.32
115 116 4.102996 AGTTTTCCTGCATGGGTTGAAAAT 59.897 37.500 0.00 0.00 37.29 1.82
116 117 3.454082 AGTTTTCCTGCATGGGTTGAAAA 59.546 39.130 0.00 0.00 33.79 2.29
117 118 3.037549 AGTTTTCCTGCATGGGTTGAAA 58.962 40.909 0.00 0.00 36.20 2.69
118 119 2.676748 AGTTTTCCTGCATGGGTTGAA 58.323 42.857 0.00 0.00 36.20 2.69
119 120 2.380064 AGTTTTCCTGCATGGGTTGA 57.620 45.000 0.00 0.00 36.20 3.18
120 121 2.095263 CGTAGTTTTCCTGCATGGGTTG 60.095 50.000 0.00 0.00 36.20 3.77
121 122 2.159382 CGTAGTTTTCCTGCATGGGTT 58.841 47.619 0.00 0.00 36.20 4.11
122 123 1.073284 ACGTAGTTTTCCTGCATGGGT 59.927 47.619 0.00 0.00 37.78 4.51
123 124 1.468520 CACGTAGTTTTCCTGCATGGG 59.531 52.381 0.00 0.00 41.61 4.00
124 125 2.095768 CACACGTAGTTTTCCTGCATGG 60.096 50.000 0.00 0.00 41.61 3.66
125 126 2.805671 TCACACGTAGTTTTCCTGCATG 59.194 45.455 0.00 0.00 41.61 4.06
126 127 3.120321 TCACACGTAGTTTTCCTGCAT 57.880 42.857 0.00 0.00 41.61 3.96
127 128 2.605837 TCACACGTAGTTTTCCTGCA 57.394 45.000 0.00 0.00 41.61 4.41
128 129 3.064207 TGATCACACGTAGTTTTCCTGC 58.936 45.455 0.00 0.00 41.61 4.85
129 130 5.666969 TTTGATCACACGTAGTTTTCCTG 57.333 39.130 0.00 0.00 41.61 3.86
130 131 6.877611 ATTTTGATCACACGTAGTTTTCCT 57.122 33.333 0.00 0.00 41.61 3.36
131 132 7.577979 TGTATTTTGATCACACGTAGTTTTCC 58.422 34.615 0.00 0.00 41.61 3.13
132 133 8.996988 TTGTATTTTGATCACACGTAGTTTTC 57.003 30.769 0.00 0.00 41.61 2.29
133 134 9.445786 CTTTGTATTTTGATCACACGTAGTTTT 57.554 29.630 0.00 0.00 41.61 2.43
134 135 8.832521 TCTTTGTATTTTGATCACACGTAGTTT 58.167 29.630 0.00 0.00 41.61 2.66
135 136 8.373048 TCTTTGTATTTTGATCACACGTAGTT 57.627 30.769 0.00 0.00 41.61 2.24
137 138 6.955963 GCTCTTTGTATTTTGATCACACGTAG 59.044 38.462 0.00 0.00 0.00 3.51
138 139 6.400621 CGCTCTTTGTATTTTGATCACACGTA 60.401 38.462 0.00 0.00 0.00 3.57
139 140 5.614668 CGCTCTTTGTATTTTGATCACACGT 60.615 40.000 0.00 0.00 0.00 4.49
140 141 4.783036 CGCTCTTTGTATTTTGATCACACG 59.217 41.667 0.00 0.00 0.00 4.49
141 142 5.088739 CCGCTCTTTGTATTTTGATCACAC 58.911 41.667 0.00 0.00 0.00 3.82
142 143 4.379394 GCCGCTCTTTGTATTTTGATCACA 60.379 41.667 0.00 0.00 0.00 3.58
143 144 4.098416 GCCGCTCTTTGTATTTTGATCAC 58.902 43.478 0.00 0.00 0.00 3.06
144 145 3.755905 TGCCGCTCTTTGTATTTTGATCA 59.244 39.130 0.00 0.00 0.00 2.92
145 146 4.355543 TGCCGCTCTTTGTATTTTGATC 57.644 40.909 0.00 0.00 0.00 2.92
146 147 4.989279 ATGCCGCTCTTTGTATTTTGAT 57.011 36.364 0.00 0.00 0.00 2.57
147 148 4.697828 TGTATGCCGCTCTTTGTATTTTGA 59.302 37.500 0.00 0.00 0.00 2.69
148 149 4.980590 TGTATGCCGCTCTTTGTATTTTG 58.019 39.130 0.00 0.00 0.00 2.44
149 150 5.637006 TTGTATGCCGCTCTTTGTATTTT 57.363 34.783 0.00 0.00 0.00 1.82
150 151 5.637006 TTTGTATGCCGCTCTTTGTATTT 57.363 34.783 0.00 0.00 0.00 1.40
151 152 4.438744 GCTTTGTATGCCGCTCTTTGTATT 60.439 41.667 0.00 0.00 0.00 1.89
152 153 3.065371 GCTTTGTATGCCGCTCTTTGTAT 59.935 43.478 0.00 0.00 0.00 2.29
153 154 2.418628 GCTTTGTATGCCGCTCTTTGTA 59.581 45.455 0.00 0.00 0.00 2.41
154 155 1.200020 GCTTTGTATGCCGCTCTTTGT 59.800 47.619 0.00 0.00 0.00 2.83
155 156 1.470098 AGCTTTGTATGCCGCTCTTTG 59.530 47.619 0.00 0.00 0.00 2.77
156 157 1.740025 GAGCTTTGTATGCCGCTCTTT 59.260 47.619 0.00 0.00 44.04 2.52
157 158 1.339055 TGAGCTTTGTATGCCGCTCTT 60.339 47.619 14.45 0.00 46.70 2.85
158 159 0.250234 TGAGCTTTGTATGCCGCTCT 59.750 50.000 14.45 0.00 46.70 4.09
159 160 0.654683 CTGAGCTTTGTATGCCGCTC 59.345 55.000 9.00 9.00 46.74 5.03
160 161 0.745845 CCTGAGCTTTGTATGCCGCT 60.746 55.000 0.00 0.00 35.03 5.52
161 162 1.718757 CCCTGAGCTTTGTATGCCGC 61.719 60.000 0.00 0.00 0.00 6.53
162 163 1.718757 GCCCTGAGCTTTGTATGCCG 61.719 60.000 0.00 0.00 38.99 5.69
163 164 0.680921 TGCCCTGAGCTTTGTATGCC 60.681 55.000 0.00 0.00 44.23 4.40
164 165 0.453390 GTGCCCTGAGCTTTGTATGC 59.547 55.000 0.00 0.00 44.23 3.14
165 166 1.825090 TGTGCCCTGAGCTTTGTATG 58.175 50.000 0.00 0.00 44.23 2.39
166 167 2.224867 ACTTGTGCCCTGAGCTTTGTAT 60.225 45.455 0.00 0.00 44.23 2.29
167 168 1.142870 ACTTGTGCCCTGAGCTTTGTA 59.857 47.619 0.00 0.00 44.23 2.41
168 169 0.106519 ACTTGTGCCCTGAGCTTTGT 60.107 50.000 0.00 0.00 44.23 2.83
169 170 0.313043 CACTTGTGCCCTGAGCTTTG 59.687 55.000 0.00 0.00 44.23 2.77
170 171 1.458639 GCACTTGTGCCCTGAGCTTT 61.459 55.000 14.17 0.00 44.23 3.51
171 172 1.900498 GCACTTGTGCCCTGAGCTT 60.900 57.895 14.17 0.00 44.23 3.74
172 173 2.282040 GCACTTGTGCCCTGAGCT 60.282 61.111 14.17 0.00 44.23 4.09
180 181 0.809636 GGGTTGTTTGGCACTTGTGC 60.810 55.000 16.50 16.50 0.00 4.57
181 182 0.534412 TGGGTTGTTTGGCACTTGTG 59.466 50.000 0.00 0.00 0.00 3.33
182 183 0.823460 CTGGGTTGTTTGGCACTTGT 59.177 50.000 0.00 0.00 0.00 3.16
183 184 1.110442 TCTGGGTTGTTTGGCACTTG 58.890 50.000 0.00 0.00 0.00 3.16
184 185 1.756538 CTTCTGGGTTGTTTGGCACTT 59.243 47.619 0.00 0.00 0.00 3.16
185 186 1.402787 CTTCTGGGTTGTTTGGCACT 58.597 50.000 0.00 0.00 0.00 4.40
186 187 0.389025 CCTTCTGGGTTGTTTGGCAC 59.611 55.000 0.00 0.00 0.00 5.01
187 188 2.819477 CCTTCTGGGTTGTTTGGCA 58.181 52.632 0.00 0.00 0.00 4.92
198 199 2.080654 TTTTGGTTGGTCCCTTCTGG 57.919 50.000 0.00 0.00 34.77 3.86
199 200 3.305335 CGATTTTTGGTTGGTCCCTTCTG 60.305 47.826 0.00 0.00 34.77 3.02
200 201 2.890945 CGATTTTTGGTTGGTCCCTTCT 59.109 45.455 0.00 0.00 34.77 2.85
201 202 2.609491 GCGATTTTTGGTTGGTCCCTTC 60.609 50.000 0.00 0.00 34.77 3.46
202 203 1.343142 GCGATTTTTGGTTGGTCCCTT 59.657 47.619 0.00 0.00 34.77 3.95
203 204 0.966179 GCGATTTTTGGTTGGTCCCT 59.034 50.000 0.00 0.00 34.77 4.20
204 205 0.676736 TGCGATTTTTGGTTGGTCCC 59.323 50.000 0.00 0.00 34.77 4.46
205 206 1.067821 TGTGCGATTTTTGGTTGGTCC 59.932 47.619 0.00 0.00 0.00 4.46
206 207 2.500509 TGTGCGATTTTTGGTTGGTC 57.499 45.000 0.00 0.00 0.00 4.02
207 208 2.167487 ACTTGTGCGATTTTTGGTTGGT 59.833 40.909 0.00 0.00 0.00 3.67
208 209 2.539274 CACTTGTGCGATTTTTGGTTGG 59.461 45.455 0.00 0.00 0.00 3.77
209 210 3.242712 GTCACTTGTGCGATTTTTGGTTG 59.757 43.478 0.00 0.00 0.00 3.77
210 211 3.130340 AGTCACTTGTGCGATTTTTGGTT 59.870 39.130 0.00 0.00 0.00 3.67
211 212 2.687935 AGTCACTTGTGCGATTTTTGGT 59.312 40.909 0.00 0.00 0.00 3.67
212 213 3.044986 CAGTCACTTGTGCGATTTTTGG 58.955 45.455 0.00 0.00 0.00 3.28
213 214 3.951306 TCAGTCACTTGTGCGATTTTTG 58.049 40.909 0.00 0.00 0.00 2.44
214 215 4.142491 TGTTCAGTCACTTGTGCGATTTTT 60.142 37.500 0.00 0.00 0.00 1.94
215 216 3.376859 TGTTCAGTCACTTGTGCGATTTT 59.623 39.130 0.00 0.00 0.00 1.82
216 217 2.942376 TGTTCAGTCACTTGTGCGATTT 59.058 40.909 0.00 0.00 0.00 2.17
217 218 2.560504 TGTTCAGTCACTTGTGCGATT 58.439 42.857 0.00 0.00 0.00 3.34
218 219 2.238942 TGTTCAGTCACTTGTGCGAT 57.761 45.000 0.00 0.00 0.00 4.58
219 220 2.238942 ATGTTCAGTCACTTGTGCGA 57.761 45.000 0.00 0.00 0.00 5.10
220 221 3.247411 TGTAATGTTCAGTCACTTGTGCG 59.753 43.478 0.00 0.00 0.00 5.34
221 222 4.811555 TGTAATGTTCAGTCACTTGTGC 57.188 40.909 0.00 0.00 0.00 4.57
237 238 9.692325 AAGAAGAGAGAAAAATAGGCATGTAAT 57.308 29.630 0.00 0.00 0.00 1.89
238 239 8.950210 CAAGAAGAGAGAAAAATAGGCATGTAA 58.050 33.333 0.00 0.00 0.00 2.41
239 240 8.321353 TCAAGAAGAGAGAAAAATAGGCATGTA 58.679 33.333 0.00 0.00 0.00 2.29
240 241 7.170965 TCAAGAAGAGAGAAAAATAGGCATGT 58.829 34.615 0.00 0.00 0.00 3.21
241 242 7.621428 TCAAGAAGAGAGAAAAATAGGCATG 57.379 36.000 0.00 0.00 0.00 4.06
242 243 7.887495 AGTTCAAGAAGAGAGAAAAATAGGCAT 59.113 33.333 0.00 0.00 0.00 4.40
243 244 7.227156 AGTTCAAGAAGAGAGAAAAATAGGCA 58.773 34.615 0.00 0.00 0.00 4.75
244 245 7.680442 AGTTCAAGAAGAGAGAAAAATAGGC 57.320 36.000 0.00 0.00 0.00 3.93
245 246 9.712305 TGTAGTTCAAGAAGAGAGAAAAATAGG 57.288 33.333 0.00 0.00 0.00 2.57
247 248 9.193133 CGTGTAGTTCAAGAAGAGAGAAAAATA 57.807 33.333 0.00 0.00 0.00 1.40
248 249 7.711339 ACGTGTAGTTCAAGAAGAGAGAAAAAT 59.289 33.333 0.00 0.00 0.00 1.82
249 250 7.039882 ACGTGTAGTTCAAGAAGAGAGAAAAA 58.960 34.615 0.00 0.00 0.00 1.94
250 251 6.570692 ACGTGTAGTTCAAGAAGAGAGAAAA 58.429 36.000 0.00 0.00 0.00 2.29
251 252 6.039493 AGACGTGTAGTTCAAGAAGAGAGAAA 59.961 38.462 0.00 0.00 0.00 2.52
252 253 5.531659 AGACGTGTAGTTCAAGAAGAGAGAA 59.468 40.000 0.00 0.00 0.00 2.87
253 254 5.064558 AGACGTGTAGTTCAAGAAGAGAGA 58.935 41.667 0.00 0.00 0.00 3.10
254 255 5.365403 AGACGTGTAGTTCAAGAAGAGAG 57.635 43.478 0.00 0.00 0.00 3.20
255 256 8.734218 ATATAGACGTGTAGTTCAAGAAGAGA 57.266 34.615 0.00 0.00 0.00 3.10
256 257 9.866936 GTATATAGACGTGTAGTTCAAGAAGAG 57.133 37.037 0.00 0.00 0.00 2.85
257 258 9.610705 AGTATATAGACGTGTAGTTCAAGAAGA 57.389 33.333 0.00 0.00 0.00 2.87
269 270 9.031360 CACAAGCAATTAAGTATATAGACGTGT 57.969 33.333 0.00 0.00 0.00 4.49
270 271 8.004344 GCACAAGCAATTAAGTATATAGACGTG 58.996 37.037 0.00 0.00 41.58 4.49
271 272 7.926555 AGCACAAGCAATTAAGTATATAGACGT 59.073 33.333 0.00 0.00 45.49 4.34
272 273 8.299262 AGCACAAGCAATTAAGTATATAGACG 57.701 34.615 0.00 0.00 45.49 4.18
279 280 9.751542 CTACTAGTAGCACAAGCAATTAAGTAT 57.248 33.333 16.77 0.00 45.49 2.12
296 297 7.707893 GGGAGTAGATCGATAAGCTACTAGTAG 59.292 44.444 23.25 23.25 43.43 2.57
297 298 7.399765 AGGGAGTAGATCGATAAGCTACTAGTA 59.600 40.741 19.65 1.89 43.43 1.82
298 299 6.214005 AGGGAGTAGATCGATAAGCTACTAGT 59.786 42.308 19.65 9.89 43.43 2.57
299 300 6.646267 AGGGAGTAGATCGATAAGCTACTAG 58.354 44.000 19.65 0.00 43.43 2.57
300 301 6.352051 GGAGGGAGTAGATCGATAAGCTACTA 60.352 46.154 19.65 5.47 43.43 1.82
301 302 5.493809 GAGGGAGTAGATCGATAAGCTACT 58.506 45.833 19.70 19.70 45.38 2.57
302 303 4.637091 GGAGGGAGTAGATCGATAAGCTAC 59.363 50.000 12.57 12.57 35.81 3.58
303 304 4.623409 CGGAGGGAGTAGATCGATAAGCTA 60.623 50.000 0.00 0.00 0.00 3.32
304 305 3.692690 GGAGGGAGTAGATCGATAAGCT 58.307 50.000 0.00 0.00 0.00 3.74
305 306 2.420722 CGGAGGGAGTAGATCGATAAGC 59.579 54.545 0.00 0.00 0.00 3.09
306 307 3.677190 ACGGAGGGAGTAGATCGATAAG 58.323 50.000 0.00 0.00 0.00 1.73
307 308 3.784511 ACGGAGGGAGTAGATCGATAA 57.215 47.619 0.00 0.00 0.00 1.75
308 309 3.784511 AACGGAGGGAGTAGATCGATA 57.215 47.619 0.00 0.00 0.00 2.92
309 310 2.660670 AACGGAGGGAGTAGATCGAT 57.339 50.000 0.00 0.00 0.00 3.59
310 311 2.295885 GAAACGGAGGGAGTAGATCGA 58.704 52.381 0.00 0.00 0.00 3.59
311 312 2.022195 TGAAACGGAGGGAGTAGATCG 58.978 52.381 0.00 0.00 0.00 3.69
312 313 4.467198 TTTGAAACGGAGGGAGTAGATC 57.533 45.455 0.00 0.00 0.00 2.75
313 314 5.437191 AATTTGAAACGGAGGGAGTAGAT 57.563 39.130 0.00 0.00 0.00 1.98
314 315 4.903045 AATTTGAAACGGAGGGAGTAGA 57.097 40.909 0.00 0.00 0.00 2.59
315 316 5.581085 CAGTAATTTGAAACGGAGGGAGTAG 59.419 44.000 0.00 0.00 0.00 2.57
316 317 5.484715 CAGTAATTTGAAACGGAGGGAGTA 58.515 41.667 0.00 0.00 0.00 2.59
317 318 4.324267 CAGTAATTTGAAACGGAGGGAGT 58.676 43.478 0.00 0.00 0.00 3.85
318 319 3.689649 CCAGTAATTTGAAACGGAGGGAG 59.310 47.826 0.00 0.00 0.00 4.30
319 320 3.073356 ACCAGTAATTTGAAACGGAGGGA 59.927 43.478 0.00 0.00 0.00 4.20
320 321 3.418047 ACCAGTAATTTGAAACGGAGGG 58.582 45.455 0.00 0.00 0.00 4.30
321 322 3.124636 CGACCAGTAATTTGAAACGGAGG 59.875 47.826 0.00 0.00 0.00 4.30
322 323 3.744426 ACGACCAGTAATTTGAAACGGAG 59.256 43.478 0.00 0.00 0.00 4.63
323 324 3.495377 CACGACCAGTAATTTGAAACGGA 59.505 43.478 0.00 0.00 0.00 4.69
324 325 3.364565 CCACGACCAGTAATTTGAAACGG 60.365 47.826 0.00 0.00 0.00 4.44
325 326 3.249080 ACCACGACCAGTAATTTGAAACG 59.751 43.478 0.00 0.00 0.00 3.60
326 327 4.823790 ACCACGACCAGTAATTTGAAAC 57.176 40.909 0.00 0.00 0.00 2.78
327 328 5.838531 AAACCACGACCAGTAATTTGAAA 57.161 34.783 0.00 0.00 0.00 2.69
328 329 5.838531 AAAACCACGACCAGTAATTTGAA 57.161 34.783 0.00 0.00 0.00 2.69
329 330 6.056884 ACTAAAACCACGACCAGTAATTTGA 58.943 36.000 0.00 0.00 0.00 2.69
330 331 6.308371 ACTAAAACCACGACCAGTAATTTG 57.692 37.500 0.00 0.00 0.00 2.32
331 332 6.543100 TGAACTAAAACCACGACCAGTAATTT 59.457 34.615 0.00 0.00 0.00 1.82
332 333 6.056884 TGAACTAAAACCACGACCAGTAATT 58.943 36.000 0.00 0.00 0.00 1.40
333 334 5.613329 TGAACTAAAACCACGACCAGTAAT 58.387 37.500 0.00 0.00 0.00 1.89
334 335 5.021033 TGAACTAAAACCACGACCAGTAA 57.979 39.130 0.00 0.00 0.00 2.24
335 336 4.669206 TGAACTAAAACCACGACCAGTA 57.331 40.909 0.00 0.00 0.00 2.74
336 337 3.547054 TGAACTAAAACCACGACCAGT 57.453 42.857 0.00 0.00 0.00 4.00
337 338 4.124238 TCTTGAACTAAAACCACGACCAG 58.876 43.478 0.00 0.00 0.00 4.00
338 339 4.139859 TCTTGAACTAAAACCACGACCA 57.860 40.909 0.00 0.00 0.00 4.02
339 340 4.083484 CCATCTTGAACTAAAACCACGACC 60.083 45.833 0.00 0.00 0.00 4.79
340 341 4.514066 ACCATCTTGAACTAAAACCACGAC 59.486 41.667 0.00 0.00 0.00 4.34
341 342 4.513692 CACCATCTTGAACTAAAACCACGA 59.486 41.667 0.00 0.00 0.00 4.35
342 343 4.274950 ACACCATCTTGAACTAAAACCACG 59.725 41.667 0.00 0.00 0.00 4.94
343 344 5.767816 ACACCATCTTGAACTAAAACCAC 57.232 39.130 0.00 0.00 0.00 4.16
344 345 7.883391 TTTACACCATCTTGAACTAAAACCA 57.117 32.000 0.00 0.00 0.00 3.67
345 346 9.758651 AAATTTACACCATCTTGAACTAAAACC 57.241 29.630 0.00 0.00 0.00 3.27
349 350 8.736244 GCCTAAATTTACACCATCTTGAACTAA 58.264 33.333 0.00 0.00 0.00 2.24
350 351 7.885922 TGCCTAAATTTACACCATCTTGAACTA 59.114 33.333 0.00 0.00 0.00 2.24
351 352 6.719370 TGCCTAAATTTACACCATCTTGAACT 59.281 34.615 0.00 0.00 0.00 3.01
352 353 6.919721 TGCCTAAATTTACACCATCTTGAAC 58.080 36.000 0.00 0.00 0.00 3.18
353 354 7.531857 TTGCCTAAATTTACACCATCTTGAA 57.468 32.000 0.00 0.00 0.00 2.69
354 355 7.375053 GTTTGCCTAAATTTACACCATCTTGA 58.625 34.615 0.00 0.00 0.00 3.02
355 356 6.589907 GGTTTGCCTAAATTTACACCATCTTG 59.410 38.462 0.00 0.00 0.00 3.02
356 357 6.496911 AGGTTTGCCTAAATTTACACCATCTT 59.503 34.615 0.00 0.00 44.90 2.40
363 364 7.001674 TCTTCTCAGGTTTGCCTAAATTTACA 58.998 34.615 0.00 0.00 44.97 2.41
387 388 2.810852 CAAGCCCTGACAAGTCTTTCTC 59.189 50.000 1.53 0.00 0.00 2.87
388 389 2.173569 ACAAGCCCTGACAAGTCTTTCT 59.826 45.455 1.53 0.00 0.00 2.52
389 390 2.291741 CACAAGCCCTGACAAGTCTTTC 59.708 50.000 1.53 0.00 0.00 2.62
390 391 2.092429 TCACAAGCCCTGACAAGTCTTT 60.092 45.455 1.53 0.00 0.00 2.52
391 392 1.490490 TCACAAGCCCTGACAAGTCTT 59.510 47.619 1.53 0.00 0.00 3.01
402 403 1.507141 CGGTCACAACTCACAAGCCC 61.507 60.000 0.00 0.00 0.00 5.19
404 405 1.014352 AACGGTCACAACTCACAAGC 58.986 50.000 0.00 0.00 0.00 4.01
412 413 0.922111 CAACGCGAAACGGTCACAAC 60.922 55.000 15.93 0.00 36.55 3.32
413 414 1.348938 CAACGCGAAACGGTCACAA 59.651 52.632 15.93 0.00 36.55 3.33
414 415 2.526993 CCAACGCGAAACGGTCACA 61.527 57.895 15.93 0.00 36.55 3.58
415 416 2.154427 CTCCAACGCGAAACGGTCAC 62.154 60.000 15.93 0.00 36.55 3.67
417 418 1.216941 TTCTCCAACGCGAAACGGTC 61.217 55.000 15.93 0.00 36.55 4.79
421 422 2.031191 TCAAACTTCTCCAACGCGAAAC 59.969 45.455 15.93 0.00 0.00 2.78
422 423 2.031191 GTCAAACTTCTCCAACGCGAAA 59.969 45.455 15.93 0.00 0.00 3.46
423 424 1.595794 GTCAAACTTCTCCAACGCGAA 59.404 47.619 15.93 0.00 0.00 4.70
424 425 1.202486 AGTCAAACTTCTCCAACGCGA 60.202 47.619 15.93 0.00 0.00 5.87
425 426 1.217882 AGTCAAACTTCTCCAACGCG 58.782 50.000 3.53 3.53 0.00 6.01
426 427 2.354821 ACAAGTCAAACTTCTCCAACGC 59.645 45.455 0.00 0.00 36.03 4.84
454 455 2.203422 CCAAGTGGCCGGAAACCA 60.203 61.111 5.05 0.00 33.84 3.67
460 461 3.901797 GACAGACCCAAGTGGCCGG 62.902 68.421 0.00 0.00 37.83 6.13
472 473 1.899437 TTGATCCGGCCCAGACAGAC 61.899 60.000 0.00 0.00 0.00 3.51
473 474 1.612146 TTGATCCGGCCCAGACAGA 60.612 57.895 0.00 0.00 0.00 3.41
474 475 1.450312 GTTGATCCGGCCCAGACAG 60.450 63.158 0.00 0.00 0.00 3.51
475 476 2.668632 GTTGATCCGGCCCAGACA 59.331 61.111 0.00 0.00 0.00 3.41
495 496 2.632996 AGAGAGTGTTGTTCCATTCGGA 59.367 45.455 0.00 0.00 40.60 4.55
504 505 7.661437 TGTTGCTGATAATAAGAGAGTGTTGTT 59.339 33.333 0.00 0.00 0.00 2.83
522 524 0.674581 CGCCTGATTCCTGTTGCTGA 60.675 55.000 0.00 0.00 0.00 4.26
532 534 0.531974 TATTCCGGTGCGCCTGATTC 60.532 55.000 15.69 0.00 0.00 2.52
533 535 0.532862 CTATTCCGGTGCGCCTGATT 60.533 55.000 15.69 12.13 0.00 2.57
549 551 2.834113 ACAAGTGGCAGGTAGGACTAT 58.166 47.619 0.00 0.00 0.00 2.12
644 671 1.154016 TAGTCTCGCTCGCACAAGC 60.154 57.895 0.00 0.00 38.97 4.01
663 698 1.039785 TCATGCTCCTCCTCCACGAG 61.040 60.000 0.00 0.00 0.00 4.18
666 701 0.463620 GAGTCATGCTCCTCCTCCAC 59.536 60.000 6.02 0.00 38.27 4.02
667 702 1.039785 CGAGTCATGCTCCTCCTCCA 61.040 60.000 10.34 0.00 41.10 3.86
668 703 0.753479 TCGAGTCATGCTCCTCCTCC 60.753 60.000 10.34 0.00 41.10 4.30
669 704 1.107114 TTCGAGTCATGCTCCTCCTC 58.893 55.000 10.34 0.00 41.10 3.71
670 705 1.561643 TTTCGAGTCATGCTCCTCCT 58.438 50.000 10.34 0.00 41.10 3.69
671 706 2.275318 CTTTTCGAGTCATGCTCCTCC 58.725 52.381 10.34 0.00 41.10 4.30
675 724 3.321497 AGACACTTTTCGAGTCATGCTC 58.679 45.455 4.78 6.98 36.10 4.26
676 725 3.243873 TGAGACACTTTTCGAGTCATGCT 60.244 43.478 4.78 0.00 36.10 3.79
763 856 5.690409 TCTTCAACTTGTACTACGAAGCTTG 59.310 40.000 2.10 0.00 31.95 4.01
771 864 7.894013 GTTGCTTTTCTTCAACTTGTACTAC 57.106 36.000 0.00 0.00 39.41 2.73
780 875 4.499865 GGGAAGGAGTTGCTTTTCTTCAAC 60.500 45.833 0.00 0.00 41.97 3.18
781 876 3.636764 GGGAAGGAGTTGCTTTTCTTCAA 59.363 43.478 0.00 0.00 36.50 2.69
782 877 3.222603 GGGAAGGAGTTGCTTTTCTTCA 58.777 45.455 0.00 0.00 36.50 3.02
784 879 2.230660 CGGGAAGGAGTTGCTTTTCTT 58.769 47.619 0.00 0.00 0.00 2.52
789 884 2.358737 CGCGGGAAGGAGTTGCTT 60.359 61.111 0.00 0.00 0.00 3.91
791 886 3.119096 GACGCGGGAAGGAGTTGC 61.119 66.667 12.47 0.00 0.00 4.17
792 887 2.434359 GGACGCGGGAAGGAGTTG 60.434 66.667 12.47 0.00 0.00 3.16
793 888 4.065281 CGGACGCGGGAAGGAGTT 62.065 66.667 12.47 0.00 0.00 3.01
874 2440 6.384224 GTTTTGGGCTGGTGTTTTATACTAC 58.616 40.000 0.00 0.00 0.00 2.73
875 2441 5.477637 GGTTTTGGGCTGGTGTTTTATACTA 59.522 40.000 0.00 0.00 0.00 1.82
876 2442 4.282449 GGTTTTGGGCTGGTGTTTTATACT 59.718 41.667 0.00 0.00 0.00 2.12
974 2554 2.315386 GGTCGAGTCGGTTGGCAAC 61.315 63.158 21.92 21.92 0.00 4.17
976 2556 4.351938 CGGTCGAGTCGGTTGGCA 62.352 66.667 13.54 0.00 0.00 4.92
1583 3207 4.715523 CATGGTGGGAACGGCCGT 62.716 66.667 28.70 28.70 37.63 5.68
1590 3214 2.440147 CTGTGGCCATGGTGGGAA 59.560 61.111 9.72 0.00 38.19 3.97
1657 3308 3.003763 GTCTCCCTCCGGCTGGTT 61.004 66.667 12.43 0.00 36.30 3.67
1660 3311 2.581354 CTTGTCTCCCTCCGGCTG 59.419 66.667 0.00 0.00 0.00 4.85
1794 3445 2.752238 CTGTCGTCGGAGCTCCCT 60.752 66.667 27.20 0.00 0.00 4.20
1801 3452 2.747460 CCGGTACCTGTCGTCGGA 60.747 66.667 10.90 0.00 42.94 4.55
1885 3548 2.571653 TCCGAACATGTCCAATCCTCTT 59.428 45.455 0.00 0.00 0.00 2.85
2089 3758 2.373938 GGCGGACGATCTTGAGTTG 58.626 57.895 0.00 0.00 0.00 3.16
2176 4075 1.302033 CTGACTGAAGCCGGCAACT 60.302 57.895 31.54 12.98 0.00 3.16
2217 4116 2.579873 CCATATGGCTGCAGCTAAACT 58.420 47.619 35.82 19.34 41.70 2.66
2230 4129 2.865119 TATCTGCTGTGGCCATATGG 57.135 50.000 18.07 18.07 37.74 2.74
2258 4157 8.993121 CCGCTATCAATCAATACAACTAAATCT 58.007 33.333 0.00 0.00 0.00 2.40
2283 4183 1.199624 CTGCGTGCAAAAGTTCAACC 58.800 50.000 0.00 0.00 0.00 3.77
2395 4295 4.382541 TCCTGCAGCTCGGGGAGA 62.383 66.667 8.66 0.00 41.78 3.71
2478 4378 3.680786 CCCGACTCTGGCGTCACA 61.681 66.667 0.00 0.00 33.54 3.58
2486 4386 0.108089 TCTCGACTCTCCCGACTCTG 60.108 60.000 0.00 0.00 32.18 3.35
2522 4422 7.872993 CGGCAGATTGTCCTTTAATAATAGAGA 59.127 37.037 0.00 0.00 0.00 3.10
2523 4423 7.657761 ACGGCAGATTGTCCTTTAATAATAGAG 59.342 37.037 0.00 0.00 0.00 2.43
2538 4438 0.396435 TCACAAGGACGGCAGATTGT 59.604 50.000 0.00 0.00 36.34 2.71
2548 4448 1.002087 AGGTCGAACCATCACAAGGAC 59.998 52.381 0.00 0.00 41.95 3.85
2551 4451 1.276421 AGGAGGTCGAACCATCACAAG 59.724 52.381 0.00 0.00 41.95 3.16
2553 4453 0.895530 GAGGAGGTCGAACCATCACA 59.104 55.000 0.00 0.00 41.95 3.58
2692 4592 1.269723 GTGGGCTGTTTACTTTCCTGC 59.730 52.381 0.00 0.00 0.00 4.85
2850 4750 2.224137 CGAGCTCCAGCAAGATAATGGA 60.224 50.000 8.47 0.00 45.16 3.41
2855 4755 1.474330 TGTCGAGCTCCAGCAAGATA 58.526 50.000 8.47 0.00 45.16 1.98
2857 4757 0.037882 CTTGTCGAGCTCCAGCAAGA 60.038 55.000 23.86 7.89 45.16 3.02
2992 4892 1.224120 TCCCTATTCATGGAGGAGGCT 59.776 52.381 9.94 0.00 34.46 4.58
3044 4944 0.668401 GCATTGCCAAAGTGCCAGTC 60.668 55.000 0.00 0.00 32.88 3.51
3077 4977 0.325671 TTGGGCGATCCTCCTTCTCT 60.326 55.000 0.00 0.00 36.20 3.10
3081 4981 1.078426 CGTTTGGGCGATCCTCCTT 60.078 57.895 0.00 0.00 36.20 3.36
3106 5006 0.106167 TATCCTCTGCTACTGGCCGT 60.106 55.000 0.00 1.25 40.92 5.68
3124 5024 0.752658 CAGGCACCATCACCGATCTA 59.247 55.000 0.00 0.00 0.00 1.98
3185 5085 1.214589 CGAGTGTGGGGAGGTAACG 59.785 63.158 0.00 0.00 46.39 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.