Multiple sequence alignment - TraesCS4B01G044700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G044700 chr4B 100.000 3038 0 0 1 3038 32261977 32258940 0.000000e+00 5611.0
1 TraesCS4B01G044700 chr4D 88.525 1525 75 36 2 1484 19689886 19688420 0.000000e+00 1755.0
2 TraesCS4B01G044700 chr4D 89.545 440 17 11 1798 2237 19688393 19687983 5.770000e-147 531.0
3 TraesCS4B01G044700 chr4A 86.835 1147 62 32 367 1477 581269387 581270480 0.000000e+00 1199.0
4 TraesCS4B01G044700 chr4A 91.897 543 36 2 2384 2919 670889684 670889143 0.000000e+00 752.0
5 TraesCS4B01G044700 chr4A 88.729 417 25 9 1824 2237 581270570 581270967 9.790000e-135 490.0
6 TraesCS4B01G044700 chr4A 86.667 135 10 5 24 156 581268931 581269059 3.160000e-30 143.0
7 TraesCS4B01G044700 chr3A 92.767 553 30 3 2384 2927 657465334 657464783 0.000000e+00 791.0
8 TraesCS4B01G044700 chr3A 90.792 543 36 4 2384 2919 719688266 719688801 0.000000e+00 713.0
9 TraesCS4B01G044700 chr5B 92.066 542 34 5 2392 2926 568826088 568826627 0.000000e+00 754.0
10 TraesCS4B01G044700 chr5B 92.574 202 12 3 1505 1704 684765225 684765425 1.380000e-73 287.0
11 TraesCS4B01G044700 chr5B 97.143 70 0 2 1702 1770 660193367 660193435 1.910000e-22 117.0
12 TraesCS4B01G044700 chr5B 92.424 66 5 0 1702 1767 684767753 684767818 8.970000e-16 95.3
13 TraesCS4B01G044700 chr7B 91.241 548 38 9 2384 2924 89886253 89885709 0.000000e+00 737.0
14 TraesCS4B01G044700 chr3D 91.376 545 38 3 2384 2921 160129941 160129399 0.000000e+00 737.0
15 TraesCS4B01G044700 chr6A 90.128 547 45 3 2384 2923 549168988 549168444 0.000000e+00 702.0
16 TraesCS4B01G044700 chr6A 89.781 548 46 4 2384 2924 555208002 555207458 0.000000e+00 693.0
17 TraesCS4B01G044700 chr1A 90.353 539 44 4 2384 2915 15038406 15037869 0.000000e+00 701.0
18 TraesCS4B01G044700 chr1B 91.480 446 30 3 2384 2822 662500743 662500299 9.320000e-170 606.0
19 TraesCS4B01G044700 chr1B 92.347 196 12 3 1511 1704 327563474 327563280 2.980000e-70 276.0
20 TraesCS4B01G044700 chr1B 95.775 71 3 0 1702 1772 327563250 327563180 6.880000e-22 115.0
21 TraesCS4B01G044700 chr3B 93.434 198 10 3 1508 1704 31795199 31795394 1.070000e-74 291.0
22 TraesCS4B01G044700 chr3B 92.857 196 11 3 1511 1704 661161546 661161740 6.410000e-72 281.0
23 TraesCS4B01G044700 chr3B 92.857 196 11 3 1511 1704 661190531 661190725 6.410000e-72 281.0
24 TraesCS4B01G044700 chr3B 95.652 69 3 0 1702 1770 31795424 31795492 8.900000e-21 111.0
25 TraesCS4B01G044700 chr3B 95.652 69 3 0 1702 1770 661190755 661190823 8.900000e-21 111.0
26 TraesCS4B01G044700 chr3B 94.286 70 2 2 1702 1770 661161770 661161838 4.140000e-19 106.0
27 TraesCS4B01G044700 chr3B 85.577 104 8 4 2934 3036 506193747 506193650 5.360000e-18 102.0
28 TraesCS4B01G044700 chr6B 93.367 196 9 4 1511 1704 674404029 674403836 1.380000e-73 287.0
29 TraesCS4B01G044700 chr2B 92.784 194 13 1 1511 1704 541899023 541898831 2.310000e-71 279.0
30 TraesCS4B01G044700 chr2B 82.819 227 28 9 1511 1735 752398195 752397978 3.090000e-45 193.0
31 TraesCS4B01G044700 chr2B 83.415 205 19 12 876 1076 77800729 77800536 3.110000e-40 176.0
32 TraesCS4B01G044700 chr2B 83.415 205 18 13 876 1076 77847651 77847459 3.110000e-40 176.0
33 TraesCS4B01G044700 chr2B 89.091 110 7 5 876 981 77796898 77796790 6.830000e-27 132.0
34 TraesCS4B01G044700 chr2B 97.101 69 2 0 1702 1770 541898801 541898733 1.910000e-22 117.0
35 TraesCS4B01G044700 chr5D 81.132 106 11 6 2934 3035 391624795 391624895 3.250000e-10 76.8
36 TraesCS4B01G044700 chr1D 82.857 70 7 4 2940 3006 487974535 487974468 1.180000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G044700 chr4B 32258940 32261977 3037 True 5611.000000 5611 100.000000 1 3038 1 chr4B.!!$R1 3037
1 TraesCS4B01G044700 chr4D 19687983 19689886 1903 True 1143.000000 1755 89.035000 2 2237 2 chr4D.!!$R1 2235
2 TraesCS4B01G044700 chr4A 670889143 670889684 541 True 752.000000 752 91.897000 2384 2919 1 chr4A.!!$R1 535
3 TraesCS4B01G044700 chr4A 581268931 581270967 2036 False 610.666667 1199 87.410333 24 2237 3 chr4A.!!$F1 2213
4 TraesCS4B01G044700 chr3A 657464783 657465334 551 True 791.000000 791 92.767000 2384 2927 1 chr3A.!!$R1 543
5 TraesCS4B01G044700 chr3A 719688266 719688801 535 False 713.000000 713 90.792000 2384 2919 1 chr3A.!!$F1 535
6 TraesCS4B01G044700 chr5B 568826088 568826627 539 False 754.000000 754 92.066000 2392 2926 1 chr5B.!!$F1 534
7 TraesCS4B01G044700 chr7B 89885709 89886253 544 True 737.000000 737 91.241000 2384 2924 1 chr7B.!!$R1 540
8 TraesCS4B01G044700 chr3D 160129399 160129941 542 True 737.000000 737 91.376000 2384 2921 1 chr3D.!!$R1 537
9 TraesCS4B01G044700 chr6A 549168444 549168988 544 True 702.000000 702 90.128000 2384 2923 1 chr6A.!!$R1 539
10 TraesCS4B01G044700 chr6A 555207458 555208002 544 True 693.000000 693 89.781000 2384 2924 1 chr6A.!!$R2 540
11 TraesCS4B01G044700 chr1A 15037869 15038406 537 True 701.000000 701 90.353000 2384 2915 1 chr1A.!!$R1 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
475 654 0.589223 CTCGGCGTCCTCTAGCTTAG 59.411 60.0 6.85 0.0 0.0 2.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2176 2423 0.031585 CAACACCCACGAACTCGAGA 59.968 55.0 21.68 0.0 43.02 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 7.147976 CAGAAGGACAAAATTAGGTTTTCTGG 58.852 38.462 18.07 8.87 37.93 3.86
45 46 7.014230 CAGAAGGACAAAATTAGGTTTTCTGGA 59.986 37.037 18.07 0.00 37.93 3.86
46 47 7.563556 AGAAGGACAAAATTAGGTTTTCTGGAA 59.436 33.333 8.21 0.00 37.93 3.53
48 49 5.926542 GGACAAAATTAGGTTTTCTGGAAGC 59.073 40.000 0.00 0.00 37.93 3.86
77 78 5.121454 GGAGTATGTTCAAAGCAAGTCTCAG 59.879 44.000 0.00 0.00 0.00 3.35
78 79 5.615289 AGTATGTTCAAAGCAAGTCTCAGT 58.385 37.500 0.00 0.00 0.00 3.41
156 159 3.674997 CTGTGTTTATGGCACCAGTACT 58.325 45.455 0.00 0.00 36.11 2.73
157 160 4.827692 CTGTGTTTATGGCACCAGTACTA 58.172 43.478 0.00 0.00 36.11 1.82
158 161 4.571919 TGTGTTTATGGCACCAGTACTAC 58.428 43.478 0.00 0.00 36.11 2.73
242 383 8.312896 TCACTTAATTAACTGTACGCATGAAA 57.687 30.769 0.00 0.00 0.00 2.69
243 384 8.775527 TCACTTAATTAACTGTACGCATGAAAA 58.224 29.630 0.00 0.00 0.00 2.29
257 398 9.859692 GTACGCATGAAAAATAAATCTAGTACC 57.140 33.333 0.00 0.00 0.00 3.34
258 399 8.732746 ACGCATGAAAAATAAATCTAGTACCT 57.267 30.769 0.00 0.00 0.00 3.08
259 400 9.826574 ACGCATGAAAAATAAATCTAGTACCTA 57.173 29.630 0.00 0.00 0.00 3.08
271 412 6.842437 ATCTAGTACCTACTACATGCATGG 57.158 41.667 29.41 15.68 37.73 3.66
272 413 5.948842 TCTAGTACCTACTACATGCATGGA 58.051 41.667 29.41 21.69 37.73 3.41
273 414 6.004574 TCTAGTACCTACTACATGCATGGAG 58.995 44.000 33.15 33.15 44.50 3.86
335 476 3.375299 CGCTCAACCCTGAAATTAAGGAG 59.625 47.826 0.00 0.00 36.91 3.69
363 509 2.264794 CCCTCCCGGTTGAACTCG 59.735 66.667 0.00 0.00 0.00 4.18
473 652 2.776913 GCTCGGCGTCCTCTAGCTT 61.777 63.158 6.85 0.00 0.00 3.74
474 653 1.445716 GCTCGGCGTCCTCTAGCTTA 61.446 60.000 6.85 0.00 0.00 3.09
475 654 0.589223 CTCGGCGTCCTCTAGCTTAG 59.411 60.000 6.85 0.00 0.00 2.18
476 655 1.008309 CGGCGTCCTCTAGCTTAGC 60.008 63.158 0.00 0.00 0.00 3.09
477 656 1.364536 GGCGTCCTCTAGCTTAGCC 59.635 63.158 0.00 0.00 36.08 3.93
550 736 2.356313 AGCAGCACCGTTCACTCG 60.356 61.111 0.00 0.00 0.00 4.18
582 768 1.387084 GCTCGCTTGACTAACTTCACG 59.613 52.381 0.00 0.00 0.00 4.35
590 776 5.122396 GCTTGACTAACTTCACGATCCATTT 59.878 40.000 0.00 0.00 0.00 2.32
591 777 6.480524 TTGACTAACTTCACGATCCATTTG 57.519 37.500 0.00 0.00 0.00 2.32
608 794 2.961531 TTGCCCTGCCAGTAAACTAA 57.038 45.000 0.00 0.00 0.00 2.24
609 795 2.489938 TGCCCTGCCAGTAAACTAAG 57.510 50.000 0.00 0.00 0.00 2.18
610 796 1.095600 GCCCTGCCAGTAAACTAAGC 58.904 55.000 0.00 0.00 0.00 3.09
611 797 1.751437 CCCTGCCAGTAAACTAAGCC 58.249 55.000 0.00 0.00 0.00 4.35
612 798 1.369625 CCTGCCAGTAAACTAAGCCG 58.630 55.000 0.00 0.00 0.00 5.52
618 806 2.618053 CAGTAAACTAAGCCGGTCCAG 58.382 52.381 1.90 0.00 0.00 3.86
694 882 3.329929 AATTCCTCTACGACCACCAAC 57.670 47.619 0.00 0.00 0.00 3.77
698 886 1.337823 CCTCTACGACCACCAACCTTG 60.338 57.143 0.00 0.00 0.00 3.61
738 933 4.074854 GGCTCTCCCCTTAGGCTT 57.925 61.111 0.00 0.00 35.52 4.35
743 938 0.620700 TCTCCCCTTAGGCTTGGACC 60.621 60.000 7.67 0.00 34.51 4.46
745 940 2.590092 CCCTTAGGCTTGGACCCG 59.410 66.667 7.67 0.00 0.00 5.28
852 1050 2.038295 CACTCTTGGCCTCTCAGTCTTT 59.962 50.000 3.32 0.00 0.00 2.52
929 1135 2.526873 ACCCAAGCCTCCACTCGT 60.527 61.111 0.00 0.00 0.00 4.18
932 1138 1.218316 CCAAGCCTCCACTCGTACC 59.782 63.158 0.00 0.00 0.00 3.34
944 1150 2.181021 CGTACCCACGCACTCCTC 59.819 66.667 0.00 0.00 42.05 3.71
945 1151 2.577593 GTACCCACGCACTCCTCC 59.422 66.667 0.00 0.00 0.00 4.30
946 1152 2.682494 TACCCACGCACTCCTCCC 60.682 66.667 0.00 0.00 0.00 4.30
974 1188 2.533974 CTTCCTCTGCTCCTGCACCC 62.534 65.000 0.00 0.00 45.31 4.61
991 1208 4.168291 CCCCTTCCCGAGCTCAGC 62.168 72.222 15.40 0.00 0.00 4.26
1246 1484 0.796491 CAGCTTCACTCTCGTCTCGC 60.796 60.000 0.00 0.00 0.00 5.03
1308 1546 1.229082 TCCCGTTGCCCTCAGTAGT 60.229 57.895 0.00 0.00 0.00 2.73
1309 1547 1.218316 CCCGTTGCCCTCAGTAGTC 59.782 63.158 0.00 0.00 0.00 2.59
1310 1548 1.541310 CCCGTTGCCCTCAGTAGTCA 61.541 60.000 0.00 0.00 0.00 3.41
1311 1549 0.108615 CCGTTGCCCTCAGTAGTCAG 60.109 60.000 0.00 0.00 0.00 3.51
1312 1550 0.603569 CGTTGCCCTCAGTAGTCAGT 59.396 55.000 0.00 0.00 0.00 3.41
1313 1551 1.816835 CGTTGCCCTCAGTAGTCAGTA 59.183 52.381 0.00 0.00 0.00 2.74
1314 1552 2.159366 CGTTGCCCTCAGTAGTCAGTAG 60.159 54.545 0.00 0.00 0.00 2.57
1347 1585 0.319555 TGTCTGTGGCAAGAGTACGC 60.320 55.000 0.00 0.00 0.00 4.42
1383 1621 2.683859 GCATGCTTGCTGAGTCGCA 61.684 57.895 16.80 5.70 45.77 5.10
1384 1622 1.989966 GCATGCTTGCTGAGTCGCAT 61.990 55.000 16.80 3.94 45.77 4.73
1398 1636 3.895025 GCATTCGCTGCCAAGAGA 58.105 55.556 0.00 0.00 45.66 3.10
1399 1637 2.174334 GCATTCGCTGCCAAGAGAA 58.826 52.632 0.00 0.00 45.66 2.87
1400 1638 0.098376 GCATTCGCTGCCAAGAGAAG 59.902 55.000 0.00 0.00 44.11 2.85
1463 1701 1.061485 GACTTTTCACTCCGACGAGC 58.939 55.000 0.00 0.00 40.03 5.03
1500 1738 1.221414 GCTTCCTTGCGCCACTATAG 58.779 55.000 4.18 0.00 0.00 1.31
1501 1739 1.221414 CTTCCTTGCGCCACTATAGC 58.779 55.000 4.18 0.00 0.00 2.97
1503 1741 0.539518 TCCTTGCGCCACTATAGCAA 59.460 50.000 4.18 2.13 46.91 3.91
1508 1746 0.931005 GCGCCACTATAGCAACACTC 59.069 55.000 0.00 0.00 0.00 3.51
1510 1748 2.196749 CGCCACTATAGCAACACTCTG 58.803 52.381 0.00 0.00 0.00 3.35
1512 1750 2.743183 GCCACTATAGCAACACTCTGGG 60.743 54.545 0.00 0.00 0.00 4.45
1514 1752 3.430929 CCACTATAGCAACACTCTGGGAC 60.431 52.174 0.00 0.00 0.00 4.46
1515 1753 2.427453 ACTATAGCAACACTCTGGGACG 59.573 50.000 0.00 0.00 0.00 4.79
1516 1754 0.537188 ATAGCAACACTCTGGGACGG 59.463 55.000 0.00 0.00 0.00 4.79
1517 1755 0.541063 TAGCAACACTCTGGGACGGA 60.541 55.000 0.00 0.00 44.24 4.69
1524 1762 3.992641 TCTGGGACGGAGCCAGGA 61.993 66.667 0.00 0.00 39.80 3.86
1525 1763 3.003173 CTGGGACGGAGCCAGGAA 61.003 66.667 0.00 0.00 34.72 3.36
1526 1764 2.528127 TGGGACGGAGCCAGGAAA 60.528 61.111 0.00 0.00 0.00 3.13
1527 1765 1.915078 CTGGGACGGAGCCAGGAAAT 61.915 60.000 0.00 0.00 34.72 2.17
1528 1766 1.303282 GGGACGGAGCCAGGAAATT 59.697 57.895 0.00 0.00 0.00 1.82
1529 1767 0.323451 GGGACGGAGCCAGGAAATTT 60.323 55.000 0.00 0.00 0.00 1.82
1531 1769 1.202348 GGACGGAGCCAGGAAATTTTG 59.798 52.381 0.00 0.00 0.00 2.44
1532 1770 0.603065 ACGGAGCCAGGAAATTTTGC 59.397 50.000 0.00 0.00 0.00 3.68
1534 1772 2.091541 CGGAGCCAGGAAATTTTGCTA 58.908 47.619 2.62 0.00 31.23 3.49
1535 1773 2.491693 CGGAGCCAGGAAATTTTGCTAA 59.508 45.455 2.62 0.00 31.23 3.09
1536 1774 3.131046 CGGAGCCAGGAAATTTTGCTAAT 59.869 43.478 2.62 0.00 31.23 1.73
1537 1775 4.436332 GGAGCCAGGAAATTTTGCTAATG 58.564 43.478 2.62 0.00 31.23 1.90
1538 1776 4.436332 GAGCCAGGAAATTTTGCTAATGG 58.564 43.478 2.62 3.33 31.23 3.16
1539 1777 4.095946 AGCCAGGAAATTTTGCTAATGGA 58.904 39.130 10.37 0.00 0.00 3.41
1540 1778 4.718276 AGCCAGGAAATTTTGCTAATGGAT 59.282 37.500 10.37 2.86 0.00 3.41
1541 1779 5.190330 AGCCAGGAAATTTTGCTAATGGATT 59.810 36.000 10.37 0.00 0.00 3.01
1542 1780 5.525012 GCCAGGAAATTTTGCTAATGGATTC 59.475 40.000 10.37 0.00 0.00 2.52
1543 1781 5.750067 CCAGGAAATTTTGCTAATGGATTCG 59.250 40.000 2.62 0.00 0.00 3.34
1544 1782 5.232838 CAGGAAATTTTGCTAATGGATTCGC 59.767 40.000 2.62 0.00 0.00 4.70
1545 1783 5.127682 AGGAAATTTTGCTAATGGATTCGCT 59.872 36.000 0.79 0.00 30.68 4.93
1546 1784 6.321181 AGGAAATTTTGCTAATGGATTCGCTA 59.679 34.615 0.79 0.00 30.68 4.26
1547 1785 6.978080 GGAAATTTTGCTAATGGATTCGCTAA 59.022 34.615 0.00 0.00 30.68 3.09
1548 1786 7.168135 GGAAATTTTGCTAATGGATTCGCTAAG 59.832 37.037 0.00 0.00 28.89 2.18
1549 1787 5.499139 TTTTGCTAATGGATTCGCTAAGG 57.501 39.130 0.00 0.00 28.89 2.69
1550 1788 3.126001 TGCTAATGGATTCGCTAAGGG 57.874 47.619 0.00 0.00 30.68 3.95
1551 1789 2.438021 TGCTAATGGATTCGCTAAGGGT 59.562 45.455 0.00 0.00 30.68 4.34
1552 1790 3.118038 TGCTAATGGATTCGCTAAGGGTT 60.118 43.478 0.00 0.00 30.68 4.11
1553 1791 3.883489 GCTAATGGATTCGCTAAGGGTTT 59.117 43.478 0.00 0.00 0.00 3.27
1554 1792 5.061179 GCTAATGGATTCGCTAAGGGTTTA 58.939 41.667 0.00 0.00 0.00 2.01
1555 1793 5.529800 GCTAATGGATTCGCTAAGGGTTTAA 59.470 40.000 0.00 0.00 0.00 1.52
1556 1794 6.293462 GCTAATGGATTCGCTAAGGGTTTAAG 60.293 42.308 0.00 0.00 0.00 1.85
1557 1795 4.563140 TGGATTCGCTAAGGGTTTAAGT 57.437 40.909 0.00 0.00 0.00 2.24
1558 1796 5.680594 TGGATTCGCTAAGGGTTTAAGTA 57.319 39.130 0.00 0.00 0.00 2.24
1559 1797 6.243216 TGGATTCGCTAAGGGTTTAAGTAT 57.757 37.500 0.00 0.00 0.00 2.12
1560 1798 6.053005 TGGATTCGCTAAGGGTTTAAGTATG 58.947 40.000 0.00 0.00 0.00 2.39
1561 1799 6.126997 TGGATTCGCTAAGGGTTTAAGTATGA 60.127 38.462 0.00 0.00 0.00 2.15
1562 1800 6.764560 GGATTCGCTAAGGGTTTAAGTATGAA 59.235 38.462 0.00 0.00 0.00 2.57
1563 1801 7.444487 GGATTCGCTAAGGGTTTAAGTATGAAT 59.556 37.037 0.00 0.00 0.00 2.57
1564 1802 8.747538 ATTCGCTAAGGGTTTAAGTATGAATT 57.252 30.769 0.00 0.00 0.00 2.17
1565 1803 9.841295 ATTCGCTAAGGGTTTAAGTATGAATTA 57.159 29.630 0.00 0.00 0.00 1.40
1566 1804 9.669887 TTCGCTAAGGGTTTAAGTATGAATTAA 57.330 29.630 0.00 0.00 0.00 1.40
1567 1805 9.101655 TCGCTAAGGGTTTAAGTATGAATTAAC 57.898 33.333 0.00 0.00 0.00 2.01
1568 1806 9.106070 CGCTAAGGGTTTAAGTATGAATTAACT 57.894 33.333 0.00 0.00 0.00 2.24
1583 1821 8.752005 ATGAATTAACTATTGTATGCAGTGGT 57.248 30.769 0.00 0.00 0.00 4.16
1584 1822 7.984391 TGAATTAACTATTGTATGCAGTGGTG 58.016 34.615 0.00 0.00 0.00 4.17
1585 1823 6.942532 ATTAACTATTGTATGCAGTGGTGG 57.057 37.500 0.00 0.00 0.00 4.61
1586 1824 4.568072 AACTATTGTATGCAGTGGTGGA 57.432 40.909 0.00 0.00 0.00 4.02
1587 1825 4.142609 ACTATTGTATGCAGTGGTGGAG 57.857 45.455 0.00 0.00 0.00 3.86
1588 1826 3.519510 ACTATTGTATGCAGTGGTGGAGT 59.480 43.478 0.00 0.00 0.00 3.85
1589 1827 2.949177 TTGTATGCAGTGGTGGAGTT 57.051 45.000 0.00 0.00 0.00 3.01
1590 1828 2.949177 TGTATGCAGTGGTGGAGTTT 57.051 45.000 0.00 0.00 0.00 2.66
1591 1829 2.503331 TGTATGCAGTGGTGGAGTTTG 58.497 47.619 0.00 0.00 0.00 2.93
1592 1830 1.200020 GTATGCAGTGGTGGAGTTTGC 59.800 52.381 0.00 0.00 35.42 3.68
1593 1831 0.178981 ATGCAGTGGTGGAGTTTGCT 60.179 50.000 0.00 0.00 35.85 3.91
1594 1832 0.472044 TGCAGTGGTGGAGTTTGCTA 59.528 50.000 0.00 0.00 35.85 3.49
1595 1833 1.160137 GCAGTGGTGGAGTTTGCTAG 58.840 55.000 0.00 0.00 0.00 3.42
1596 1834 1.270839 GCAGTGGTGGAGTTTGCTAGA 60.271 52.381 0.00 0.00 0.00 2.43
1597 1835 2.810400 GCAGTGGTGGAGTTTGCTAGAA 60.810 50.000 0.00 0.00 0.00 2.10
1598 1836 3.476552 CAGTGGTGGAGTTTGCTAGAAA 58.523 45.455 0.00 0.00 0.00 2.52
1599 1837 4.074970 CAGTGGTGGAGTTTGCTAGAAAT 58.925 43.478 0.00 0.00 0.00 2.17
1600 1838 4.520492 CAGTGGTGGAGTTTGCTAGAAATT 59.480 41.667 0.00 0.00 0.00 1.82
1601 1839 5.010012 CAGTGGTGGAGTTTGCTAGAAATTT 59.990 40.000 0.00 0.00 0.00 1.82
1602 1840 5.241728 AGTGGTGGAGTTTGCTAGAAATTTC 59.758 40.000 10.33 10.33 0.00 2.17
1603 1841 4.522789 TGGTGGAGTTTGCTAGAAATTTCC 59.477 41.667 14.61 6.76 0.00 3.13
1604 1842 4.522789 GGTGGAGTTTGCTAGAAATTTCCA 59.477 41.667 14.61 10.90 0.00 3.53
1605 1843 5.185828 GGTGGAGTTTGCTAGAAATTTCCAT 59.814 40.000 14.61 0.00 0.00 3.41
1606 1844 6.377146 GGTGGAGTTTGCTAGAAATTTCCATA 59.623 38.462 14.61 1.07 0.00 2.74
1607 1845 7.068716 GGTGGAGTTTGCTAGAAATTTCCATAT 59.931 37.037 14.61 0.00 0.00 1.78
1608 1846 9.120538 GTGGAGTTTGCTAGAAATTTCCATATA 57.879 33.333 14.61 0.02 0.00 0.86
1609 1847 9.693739 TGGAGTTTGCTAGAAATTTCCATATAA 57.306 29.630 14.61 2.11 0.00 0.98
1615 1853 8.256611 TGCTAGAAATTTCCATATAATCTCGC 57.743 34.615 14.61 1.60 0.00 5.03
1616 1854 8.097038 TGCTAGAAATTTCCATATAATCTCGCT 58.903 33.333 14.61 0.00 0.00 4.93
1617 1855 9.587772 GCTAGAAATTTCCATATAATCTCGCTA 57.412 33.333 14.61 0.00 0.00 4.26
1643 1881 6.736110 AAAAATATCTGATCCATGGTTGGG 57.264 37.500 12.58 1.54 43.81 4.12
1644 1882 4.393239 AATATCTGATCCATGGTTGGGG 57.607 45.455 12.58 0.09 43.81 4.96
1645 1883 0.855598 ATCTGATCCATGGTTGGGGG 59.144 55.000 12.58 0.00 43.81 5.40
1646 1884 1.456331 CTGATCCATGGTTGGGGGC 60.456 63.158 12.58 0.00 43.81 5.80
1647 1885 2.123295 GATCCATGGTTGGGGGCC 60.123 66.667 12.58 0.00 43.81 5.80
1648 1886 2.951785 ATCCATGGTTGGGGGCCA 60.952 61.111 12.58 0.00 43.81 5.36
1649 1887 2.528380 GATCCATGGTTGGGGGCCAA 62.528 60.000 12.58 0.00 43.81 4.52
1650 1888 1.900501 ATCCATGGTTGGGGGCCAAT 61.901 55.000 12.58 0.00 45.80 3.16
1651 1889 2.368821 CCATGGTTGGGGGCCAATG 61.369 63.158 4.39 0.00 45.80 2.82
1652 1890 2.688299 ATGGTTGGGGGCCAATGC 60.688 61.111 4.39 0.00 45.80 3.56
1683 1921 5.003804 CCCCCTCATAACATTATTCGAAGG 58.996 45.833 3.35 0.00 0.00 3.46
1684 1922 5.003804 CCCCTCATAACATTATTCGAAGGG 58.996 45.833 3.35 3.62 0.00 3.95
1685 1923 5.003804 CCCTCATAACATTATTCGAAGGGG 58.996 45.833 3.35 0.00 0.00 4.79
1686 1924 5.456186 CCCTCATAACATTATTCGAAGGGGT 60.456 44.000 3.35 0.00 0.00 4.95
1687 1925 5.701290 CCTCATAACATTATTCGAAGGGGTC 59.299 44.000 3.35 0.00 0.00 4.46
1688 1926 6.241882 TCATAACATTATTCGAAGGGGTCA 57.758 37.500 3.35 0.00 0.00 4.02
1689 1927 6.837312 TCATAACATTATTCGAAGGGGTCAT 58.163 36.000 3.35 0.00 0.00 3.06
1690 1928 7.287061 TCATAACATTATTCGAAGGGGTCATT 58.713 34.615 3.35 0.00 0.00 2.57
1691 1929 7.444183 TCATAACATTATTCGAAGGGGTCATTC 59.556 37.037 3.35 0.00 0.00 2.67
1692 1930 5.373812 ACATTATTCGAAGGGGTCATTCT 57.626 39.130 3.35 0.00 0.00 2.40
1693 1931 6.494666 ACATTATTCGAAGGGGTCATTCTA 57.505 37.500 3.35 0.00 0.00 2.10
1694 1932 6.525629 ACATTATTCGAAGGGGTCATTCTAG 58.474 40.000 3.35 0.00 0.00 2.43
1695 1933 6.326583 ACATTATTCGAAGGGGTCATTCTAGA 59.673 38.462 3.35 0.00 0.00 2.43
1696 1934 4.674281 ATTCGAAGGGGTCATTCTAGAC 57.326 45.455 3.35 0.00 37.80 2.59
1710 1948 7.653647 GTCATTCTAGACCTTCTATGTAGGTG 58.346 42.308 0.00 0.00 45.88 4.00
1711 1949 6.778069 TCATTCTAGACCTTCTATGTAGGTGG 59.222 42.308 0.00 0.00 45.88 4.61
1712 1950 4.471548 TCTAGACCTTCTATGTAGGTGGC 58.528 47.826 0.00 0.00 45.88 5.01
1713 1951 3.116096 AGACCTTCTATGTAGGTGGCA 57.884 47.619 0.00 0.00 45.88 4.92
1714 1952 3.034635 AGACCTTCTATGTAGGTGGCAG 58.965 50.000 0.00 0.00 45.88 4.85
1715 1953 3.031736 GACCTTCTATGTAGGTGGCAGA 58.968 50.000 0.00 0.00 45.88 4.26
1716 1954 3.643792 GACCTTCTATGTAGGTGGCAGAT 59.356 47.826 0.00 0.00 45.88 2.90
1717 1955 4.816126 ACCTTCTATGTAGGTGGCAGATA 58.184 43.478 0.00 0.00 44.25 1.98
1718 1956 5.216622 ACCTTCTATGTAGGTGGCAGATAA 58.783 41.667 0.00 0.00 44.25 1.75
1719 1957 5.665812 ACCTTCTATGTAGGTGGCAGATAAA 59.334 40.000 0.00 0.00 44.25 1.40
1720 1958 6.330250 ACCTTCTATGTAGGTGGCAGATAAAT 59.670 38.462 0.00 0.00 44.25 1.40
1721 1959 7.147302 ACCTTCTATGTAGGTGGCAGATAAATT 60.147 37.037 0.00 0.00 44.25 1.82
1722 1960 7.389053 CCTTCTATGTAGGTGGCAGATAAATTC 59.611 40.741 0.00 0.00 0.00 2.17
1723 1961 7.618019 TCTATGTAGGTGGCAGATAAATTCT 57.382 36.000 0.00 0.00 33.90 2.40
1724 1962 8.721133 TCTATGTAGGTGGCAGATAAATTCTA 57.279 34.615 0.00 0.00 31.77 2.10
1725 1963 9.326489 TCTATGTAGGTGGCAGATAAATTCTAT 57.674 33.333 0.00 0.00 31.77 1.98
1726 1964 9.950496 CTATGTAGGTGGCAGATAAATTCTATT 57.050 33.333 0.00 0.00 31.77 1.73
1727 1965 8.627208 ATGTAGGTGGCAGATAAATTCTATTG 57.373 34.615 0.00 0.00 31.77 1.90
1728 1966 6.998074 TGTAGGTGGCAGATAAATTCTATTGG 59.002 38.462 0.00 0.00 31.77 3.16
1729 1967 5.388654 AGGTGGCAGATAAATTCTATTGGG 58.611 41.667 0.00 0.00 31.77 4.12
1730 1968 5.103515 AGGTGGCAGATAAATTCTATTGGGT 60.104 40.000 0.00 0.00 31.77 4.51
1731 1969 5.598417 GGTGGCAGATAAATTCTATTGGGTT 59.402 40.000 0.00 0.00 31.77 4.11
1732 1970 6.239036 GGTGGCAGATAAATTCTATTGGGTTC 60.239 42.308 0.00 0.00 31.77 3.62
1733 1971 6.321181 GTGGCAGATAAATTCTATTGGGTTCA 59.679 38.462 0.00 0.00 31.77 3.18
1734 1972 6.321181 TGGCAGATAAATTCTATTGGGTTCAC 59.679 38.462 0.00 0.00 31.77 3.18
1735 1973 6.547510 GGCAGATAAATTCTATTGGGTTCACT 59.452 38.462 0.00 0.00 31.77 3.41
1736 1974 7.068716 GGCAGATAAATTCTATTGGGTTCACTT 59.931 37.037 0.00 0.00 31.77 3.16
1737 1975 7.917505 GCAGATAAATTCTATTGGGTTCACTTG 59.082 37.037 0.00 0.00 31.77 3.16
1738 1976 9.177608 CAGATAAATTCTATTGGGTTCACTTGA 57.822 33.333 0.00 0.00 31.77 3.02
1739 1977 9.753674 AGATAAATTCTATTGGGTTCACTTGAA 57.246 29.630 0.00 0.00 30.96 2.69
1750 1988 4.041740 GTTCACTTGAACCCAACCTTTC 57.958 45.455 10.50 0.00 46.42 2.62
1751 1989 3.662759 TCACTTGAACCCAACCTTTCT 57.337 42.857 0.00 0.00 0.00 2.52
1752 1990 4.781775 TCACTTGAACCCAACCTTTCTA 57.218 40.909 0.00 0.00 0.00 2.10
1753 1991 4.457466 TCACTTGAACCCAACCTTTCTAC 58.543 43.478 0.00 0.00 0.00 2.59
1754 1992 3.250040 CACTTGAACCCAACCTTTCTACG 59.750 47.826 0.00 0.00 0.00 3.51
1755 1993 1.886886 TGAACCCAACCTTTCTACGC 58.113 50.000 0.00 0.00 0.00 4.42
1756 1994 1.418637 TGAACCCAACCTTTCTACGCT 59.581 47.619 0.00 0.00 0.00 5.07
1757 1995 1.804748 GAACCCAACCTTTCTACGCTG 59.195 52.381 0.00 0.00 0.00 5.18
1758 1996 0.036306 ACCCAACCTTTCTACGCTGG 59.964 55.000 0.00 0.00 0.00 4.85
1759 1997 1.305930 CCCAACCTTTCTACGCTGGC 61.306 60.000 0.00 0.00 0.00 4.85
1760 1998 0.321653 CCAACCTTTCTACGCTGGCT 60.322 55.000 0.00 0.00 0.00 4.75
1761 1999 1.079503 CAACCTTTCTACGCTGGCTC 58.920 55.000 0.00 0.00 0.00 4.70
1762 2000 0.036294 AACCTTTCTACGCTGGCTCC 60.036 55.000 0.00 0.00 0.00 4.70
1763 2001 1.519455 CCTTTCTACGCTGGCTCCG 60.519 63.158 0.00 0.00 0.00 4.63
1764 2002 2.125673 TTTCTACGCTGGCTCCGC 60.126 61.111 0.00 0.00 0.00 5.54
1790 2028 4.854399 TGGCAACACTGTTTATTTTCTCG 58.146 39.130 0.00 0.00 46.17 4.04
1791 2029 4.336993 TGGCAACACTGTTTATTTTCTCGT 59.663 37.500 0.00 0.00 46.17 4.18
1792 2030 5.527951 TGGCAACACTGTTTATTTTCTCGTA 59.472 36.000 0.00 0.00 46.17 3.43
1793 2031 5.849604 GGCAACACTGTTTATTTTCTCGTAC 59.150 40.000 0.00 0.00 0.00 3.67
1794 2032 5.558888 GCAACACTGTTTATTTTCTCGTACG 59.441 40.000 9.53 9.53 0.00 3.67
1795 2033 6.642917 CAACACTGTTTATTTTCTCGTACGT 58.357 36.000 16.05 0.00 0.00 3.57
1796 2034 6.443876 ACACTGTTTATTTTCTCGTACGTC 57.556 37.500 16.05 0.00 0.00 4.34
2050 2294 2.470362 GCGTGATCCGTCTCTCCGA 61.470 63.158 5.66 0.00 39.32 4.55
2054 2301 1.030488 TGATCCGTCTCTCCGACCAC 61.030 60.000 0.00 0.00 39.56 4.16
2085 2332 0.872388 CCGGCCGGTGCTTATTAATC 59.128 55.000 36.64 0.00 37.74 1.75
2112 2359 7.150640 ACTTTAGTTTACTTTCCGTCTTCGAT 58.849 34.615 0.00 0.00 39.71 3.59
2114 2361 7.951530 TTAGTTTACTTTCCGTCTTCGATTT 57.048 32.000 0.00 0.00 39.71 2.17
2124 2371 4.397103 TCCGTCTTCGATTTACTGAAGCTA 59.603 41.667 0.00 0.00 41.05 3.32
2125 2372 4.499758 CCGTCTTCGATTTACTGAAGCTAC 59.500 45.833 0.00 0.00 41.05 3.58
2126 2373 4.202558 CGTCTTCGATTTACTGAAGCTACG 59.797 45.833 0.00 0.59 41.05 3.51
2127 2374 5.330295 GTCTTCGATTTACTGAAGCTACGA 58.670 41.667 0.00 0.00 41.05 3.43
2155 2402 3.640592 TGATGCGTAGTACGTGTTCAAA 58.359 40.909 22.81 4.16 44.73 2.69
2156 2403 4.239304 TGATGCGTAGTACGTGTTCAAAT 58.761 39.130 22.81 6.76 44.73 2.32
2160 2407 6.522233 TGCGTAGTACGTGTTCAAATAAAA 57.478 33.333 22.81 0.00 44.73 1.52
2161 2408 7.119605 TGCGTAGTACGTGTTCAAATAAAAT 57.880 32.000 22.81 0.00 44.73 1.82
2162 2409 7.010606 TGCGTAGTACGTGTTCAAATAAAATG 58.989 34.615 22.81 0.00 44.73 2.32
2164 2411 6.463576 CGTAGTACGTGTTCAAATAAAATGCC 59.536 38.462 14.62 0.00 36.74 4.40
2165 2412 5.705902 AGTACGTGTTCAAATAAAATGCCC 58.294 37.500 0.00 0.00 0.00 5.36
2166 2413 3.570559 ACGTGTTCAAATAAAATGCCCG 58.429 40.909 0.00 0.00 0.00 6.13
2167 2414 2.344142 CGTGTTCAAATAAAATGCCCGC 59.656 45.455 0.00 0.00 0.00 6.13
2168 2415 2.344142 GTGTTCAAATAAAATGCCCGCG 59.656 45.455 0.00 0.00 0.00 6.46
2169 2416 2.029828 TGTTCAAATAAAATGCCCGCGT 60.030 40.909 4.92 0.00 0.00 6.01
2170 2417 2.553079 TCAAATAAAATGCCCGCGTC 57.447 45.000 4.92 0.00 0.00 5.19
2171 2418 1.133407 TCAAATAAAATGCCCGCGTCC 59.867 47.619 4.92 0.00 0.00 4.79
2172 2419 0.458260 AAATAAAATGCCCGCGTCCC 59.542 50.000 4.92 0.00 0.00 4.46
2173 2420 1.720694 AATAAAATGCCCGCGTCCCG 61.721 55.000 4.92 0.00 0.00 5.14
2191 2438 2.637383 GGCTCTCGAGTTCGTGGGT 61.637 63.158 13.13 0.00 40.80 4.51
2222 2469 1.227292 GGCCGCTTGGTACTAGCTC 60.227 63.158 15.28 8.88 36.49 4.09
2229 2476 2.683867 GCTTGGTACTAGCTCGAGAGAA 59.316 50.000 18.75 0.00 41.32 2.87
2237 2484 8.784994 TGGTACTAGCTCGAGAGAAATTAATAG 58.215 37.037 18.75 5.73 41.32 1.73
2238 2485 9.001542 GGTACTAGCTCGAGAGAAATTAATAGA 57.998 37.037 18.75 0.00 41.32 1.98
2241 2488 5.739237 GCTCGAGAGAAATTAATAGAGCG 57.261 43.478 18.75 0.00 40.04 5.03
2242 2489 5.216648 GCTCGAGAGAAATTAATAGAGCGT 58.783 41.667 18.75 0.00 40.04 5.07
2243 2490 5.116377 GCTCGAGAGAAATTAATAGAGCGTG 59.884 44.000 18.75 0.00 40.04 5.34
2244 2491 6.132791 TCGAGAGAAATTAATAGAGCGTGT 57.867 37.500 0.00 0.00 37.03 4.49
2245 2492 6.561614 TCGAGAGAAATTAATAGAGCGTGTT 58.438 36.000 0.00 0.00 37.03 3.32
2246 2493 7.033791 TCGAGAGAAATTAATAGAGCGTGTTT 58.966 34.615 0.00 0.00 37.03 2.83
2247 2494 7.544566 TCGAGAGAAATTAATAGAGCGTGTTTT 59.455 33.333 0.00 0.00 37.03 2.43
2248 2495 7.632515 CGAGAGAAATTAATAGAGCGTGTTTTG 59.367 37.037 0.00 0.00 0.00 2.44
2249 2496 8.324163 AGAGAAATTAATAGAGCGTGTTTTGT 57.676 30.769 0.00 0.00 0.00 2.83
2250 2497 8.230486 AGAGAAATTAATAGAGCGTGTTTTGTG 58.770 33.333 0.00 0.00 0.00 3.33
2251 2498 7.871853 AGAAATTAATAGAGCGTGTTTTGTGT 58.128 30.769 0.00 0.00 0.00 3.72
2252 2499 7.803189 AGAAATTAATAGAGCGTGTTTTGTGTG 59.197 33.333 0.00 0.00 0.00 3.82
2253 2500 2.969443 ATAGAGCGTGTTTTGTGTGC 57.031 45.000 0.00 0.00 0.00 4.57
2254 2501 1.657822 TAGAGCGTGTTTTGTGTGCA 58.342 45.000 0.00 0.00 0.00 4.57
2255 2502 0.378257 AGAGCGTGTTTTGTGTGCAG 59.622 50.000 0.00 0.00 0.00 4.41
2256 2503 0.098728 GAGCGTGTTTTGTGTGCAGT 59.901 50.000 0.00 0.00 0.00 4.40
2257 2504 0.179166 AGCGTGTTTTGTGTGCAGTG 60.179 50.000 0.00 0.00 0.00 3.66
2258 2505 1.741947 GCGTGTTTTGTGTGCAGTGC 61.742 55.000 8.58 8.58 0.00 4.40
2259 2506 0.455802 CGTGTTTTGTGTGCAGTGCA 60.456 50.000 15.37 15.37 35.60 4.57
2273 2520 4.549793 TGCACGTGAGCAAAGGAA 57.450 50.000 22.23 0.00 42.46 3.36
2274 2521 3.019964 TGCACGTGAGCAAAGGAAT 57.980 47.368 22.23 0.00 42.46 3.01
2275 2522 2.177394 TGCACGTGAGCAAAGGAATA 57.823 45.000 22.23 0.00 42.46 1.75
2276 2523 2.499197 TGCACGTGAGCAAAGGAATAA 58.501 42.857 22.23 0.00 42.46 1.40
2277 2524 2.225491 TGCACGTGAGCAAAGGAATAAC 59.775 45.455 22.23 0.00 42.46 1.89
2278 2525 2.484264 GCACGTGAGCAAAGGAATAACT 59.516 45.455 22.23 0.00 0.00 2.24
2279 2526 3.424962 GCACGTGAGCAAAGGAATAACTC 60.425 47.826 22.23 0.00 0.00 3.01
2280 2527 3.997021 CACGTGAGCAAAGGAATAACTCT 59.003 43.478 10.90 0.00 0.00 3.24
2281 2528 3.997021 ACGTGAGCAAAGGAATAACTCTG 59.003 43.478 0.00 0.00 0.00 3.35
2282 2529 3.372206 CGTGAGCAAAGGAATAACTCTGG 59.628 47.826 0.00 0.00 0.00 3.86
2283 2530 4.327680 GTGAGCAAAGGAATAACTCTGGT 58.672 43.478 0.00 0.00 0.00 4.00
2284 2531 4.154918 GTGAGCAAAGGAATAACTCTGGTG 59.845 45.833 0.00 0.00 0.00 4.17
2285 2532 4.202461 TGAGCAAAGGAATAACTCTGGTGT 60.202 41.667 0.00 0.00 0.00 4.16
2286 2533 4.729868 AGCAAAGGAATAACTCTGGTGTT 58.270 39.130 0.00 0.00 0.00 3.32
2287 2534 4.762251 AGCAAAGGAATAACTCTGGTGTTC 59.238 41.667 0.00 0.00 0.00 3.18
2288 2535 4.082733 GCAAAGGAATAACTCTGGTGTTCC 60.083 45.833 3.40 3.40 39.39 3.62
2289 2536 3.611766 AGGAATAACTCTGGTGTTCCG 57.388 47.619 5.68 0.00 41.69 4.30
2290 2537 2.236395 AGGAATAACTCTGGTGTTCCGG 59.764 50.000 0.00 0.00 41.69 5.14
2291 2538 2.027469 GGAATAACTCTGGTGTTCCGGT 60.027 50.000 0.00 0.00 40.77 5.28
2292 2539 3.558533 GGAATAACTCTGGTGTTCCGGTT 60.559 47.826 0.00 0.00 40.77 4.44
2293 2540 2.536761 TAACTCTGGTGTTCCGGTTG 57.463 50.000 0.00 0.00 40.77 3.77
2294 2541 0.544697 AACTCTGGTGTTCCGGTTGT 59.455 50.000 0.00 0.00 40.77 3.32
2295 2542 0.179056 ACTCTGGTGTTCCGGTTGTG 60.179 55.000 0.00 0.00 40.77 3.33
2296 2543 0.179056 CTCTGGTGTTCCGGTTGTGT 60.179 55.000 0.00 0.00 40.77 3.72
2297 2544 0.462937 TCTGGTGTTCCGGTTGTGTG 60.463 55.000 0.00 0.00 40.77 3.82
2298 2545 0.746563 CTGGTGTTCCGGTTGTGTGT 60.747 55.000 0.00 0.00 35.48 3.72
2299 2546 1.027255 TGGTGTTCCGGTTGTGTGTG 61.027 55.000 0.00 0.00 36.30 3.82
2300 2547 1.063488 GTGTTCCGGTTGTGTGTGC 59.937 57.895 0.00 0.00 0.00 4.57
2301 2548 1.078072 TGTTCCGGTTGTGTGTGCT 60.078 52.632 0.00 0.00 0.00 4.40
2302 2549 0.678366 TGTTCCGGTTGTGTGTGCTT 60.678 50.000 0.00 0.00 0.00 3.91
2303 2550 0.454196 GTTCCGGTTGTGTGTGCTTT 59.546 50.000 0.00 0.00 0.00 3.51
2304 2551 1.671845 GTTCCGGTTGTGTGTGCTTTA 59.328 47.619 0.00 0.00 0.00 1.85
2305 2552 2.039818 TCCGGTTGTGTGTGCTTTAA 57.960 45.000 0.00 0.00 0.00 1.52
2306 2553 2.577700 TCCGGTTGTGTGTGCTTTAAT 58.422 42.857 0.00 0.00 0.00 1.40
2307 2554 2.292016 TCCGGTTGTGTGTGCTTTAATG 59.708 45.455 0.00 0.00 0.00 1.90
2308 2555 2.050691 CGGTTGTGTGTGCTTTAATGC 58.949 47.619 6.39 6.39 0.00 3.56
2309 2556 2.287547 CGGTTGTGTGTGCTTTAATGCT 60.288 45.455 13.80 0.00 0.00 3.79
2310 2557 3.716601 GGTTGTGTGTGCTTTAATGCTT 58.283 40.909 13.80 0.00 0.00 3.91
2311 2558 3.490526 GGTTGTGTGTGCTTTAATGCTTG 59.509 43.478 13.80 0.00 0.00 4.01
2312 2559 4.111916 GTTGTGTGTGCTTTAATGCTTGT 58.888 39.130 13.80 0.00 0.00 3.16
2313 2560 5.277825 GTTGTGTGTGCTTTAATGCTTGTA 58.722 37.500 13.80 0.00 0.00 2.41
2314 2561 5.703978 TGTGTGTGCTTTAATGCTTGTAT 57.296 34.783 13.80 0.00 0.00 2.29
2315 2562 6.809630 TGTGTGTGCTTTAATGCTTGTATA 57.190 33.333 13.80 0.00 0.00 1.47
2316 2563 7.389803 TGTGTGTGCTTTAATGCTTGTATAT 57.610 32.000 13.80 0.00 0.00 0.86
2317 2564 7.471721 TGTGTGTGCTTTAATGCTTGTATATC 58.528 34.615 13.80 0.26 0.00 1.63
2318 2565 7.120432 TGTGTGTGCTTTAATGCTTGTATATCA 59.880 33.333 13.80 2.37 0.00 2.15
2319 2566 7.641411 GTGTGTGCTTTAATGCTTGTATATCAG 59.359 37.037 13.80 0.00 0.00 2.90
2320 2567 7.552330 TGTGTGCTTTAATGCTTGTATATCAGA 59.448 33.333 13.80 0.00 0.00 3.27
2321 2568 8.562892 GTGTGCTTTAATGCTTGTATATCAGAT 58.437 33.333 13.80 0.00 0.00 2.90
2322 2569 9.123902 TGTGCTTTAATGCTTGTATATCAGATT 57.876 29.630 13.80 0.00 0.00 2.40
2323 2570 9.956720 GTGCTTTAATGCTTGTATATCAGATTT 57.043 29.630 13.80 0.00 0.00 2.17
2332 2579 9.013229 TGCTTGTATATCAGATTTTTGAGTTGT 57.987 29.630 0.00 0.00 0.00 3.32
2333 2580 9.846248 GCTTGTATATCAGATTTTTGAGTTGTT 57.154 29.630 0.00 0.00 0.00 2.83
2339 2586 6.507958 TCAGATTTTTGAGTTGTTGTGTGA 57.492 33.333 0.00 0.00 0.00 3.58
2340 2587 7.099266 TCAGATTTTTGAGTTGTTGTGTGAT 57.901 32.000 0.00 0.00 0.00 3.06
2341 2588 7.546358 TCAGATTTTTGAGTTGTTGTGTGATT 58.454 30.769 0.00 0.00 0.00 2.57
2342 2589 8.681806 TCAGATTTTTGAGTTGTTGTGTGATTA 58.318 29.630 0.00 0.00 0.00 1.75
2343 2590 8.745837 CAGATTTTTGAGTTGTTGTGTGATTAC 58.254 33.333 0.00 0.00 0.00 1.89
2344 2591 8.686334 AGATTTTTGAGTTGTTGTGTGATTACT 58.314 29.630 0.00 0.00 0.00 2.24
2345 2592 8.856490 ATTTTTGAGTTGTTGTGTGATTACTC 57.144 30.769 0.00 0.00 34.17 2.59
2346 2593 6.993786 TTTGAGTTGTTGTGTGATTACTCA 57.006 33.333 0.00 0.00 39.93 3.41
2347 2594 7.566760 TTTGAGTTGTTGTGTGATTACTCAT 57.433 32.000 0.00 0.00 40.91 2.90
2348 2595 6.785488 TGAGTTGTTGTGTGATTACTCATC 57.215 37.500 0.00 0.00 37.62 2.92
2349 2596 5.700832 TGAGTTGTTGTGTGATTACTCATCC 59.299 40.000 0.00 0.00 37.62 3.51
2350 2597 4.690748 AGTTGTTGTGTGATTACTCATCCG 59.309 41.667 0.00 0.00 32.98 4.18
2351 2598 4.265904 TGTTGTGTGATTACTCATCCGT 57.734 40.909 0.00 0.00 32.98 4.69
2352 2599 4.637276 TGTTGTGTGATTACTCATCCGTT 58.363 39.130 0.00 0.00 32.98 4.44
2353 2600 5.060506 TGTTGTGTGATTACTCATCCGTTT 58.939 37.500 0.00 0.00 32.98 3.60
2354 2601 5.178623 TGTTGTGTGATTACTCATCCGTTTC 59.821 40.000 0.00 0.00 32.98 2.78
2355 2602 5.147330 TGTGTGATTACTCATCCGTTTCT 57.853 39.130 0.00 0.00 32.98 2.52
2356 2603 5.547465 TGTGTGATTACTCATCCGTTTCTT 58.453 37.500 0.00 0.00 32.98 2.52
2357 2604 5.995282 TGTGTGATTACTCATCCGTTTCTTT 59.005 36.000 0.00 0.00 32.98 2.52
2358 2605 6.485313 TGTGTGATTACTCATCCGTTTCTTTT 59.515 34.615 0.00 0.00 32.98 2.27
2359 2606 7.012894 TGTGTGATTACTCATCCGTTTCTTTTT 59.987 33.333 0.00 0.00 32.98 1.94
2360 2607 8.500773 GTGTGATTACTCATCCGTTTCTTTTTA 58.499 33.333 0.00 0.00 32.98 1.52
2361 2608 8.500773 TGTGATTACTCATCCGTTTCTTTTTAC 58.499 33.333 0.00 0.00 32.98 2.01
2362 2609 8.718734 GTGATTACTCATCCGTTTCTTTTTACT 58.281 33.333 0.00 0.00 32.98 2.24
2363 2610 8.932791 TGATTACTCATCCGTTTCTTTTTACTC 58.067 33.333 0.00 0.00 0.00 2.59
2364 2611 9.152595 GATTACTCATCCGTTTCTTTTTACTCT 57.847 33.333 0.00 0.00 0.00 3.24
2365 2612 6.787085 ACTCATCCGTTTCTTTTTACTCTG 57.213 37.500 0.00 0.00 0.00 3.35
2366 2613 6.289064 ACTCATCCGTTTCTTTTTACTCTGT 58.711 36.000 0.00 0.00 0.00 3.41
2367 2614 6.202954 ACTCATCCGTTTCTTTTTACTCTGTG 59.797 38.462 0.00 0.00 0.00 3.66
2368 2615 4.806342 TCCGTTTCTTTTTACTCTGTGC 57.194 40.909 0.00 0.00 0.00 4.57
2369 2616 4.193090 TCCGTTTCTTTTTACTCTGTGCA 58.807 39.130 0.00 0.00 0.00 4.57
2370 2617 4.819630 TCCGTTTCTTTTTACTCTGTGCAT 59.180 37.500 0.00 0.00 0.00 3.96
2371 2618 5.992829 TCCGTTTCTTTTTACTCTGTGCATA 59.007 36.000 0.00 0.00 0.00 3.14
2372 2619 6.483974 TCCGTTTCTTTTTACTCTGTGCATAA 59.516 34.615 0.00 0.00 0.00 1.90
2373 2620 6.797033 CCGTTTCTTTTTACTCTGTGCATAAG 59.203 38.462 0.00 0.00 0.00 1.73
2374 2621 7.352739 CGTTTCTTTTTACTCTGTGCATAAGT 58.647 34.615 0.00 0.00 0.00 2.24
2375 2622 7.855904 CGTTTCTTTTTACTCTGTGCATAAGTT 59.144 33.333 0.00 0.00 0.00 2.66
2379 2626 9.502091 TCTTTTTACTCTGTGCATAAGTTATGT 57.498 29.630 21.15 5.23 38.43 2.29
2433 2680 2.760159 GCCGGCTAAATTCGCTGCA 61.760 57.895 22.15 0.00 32.45 4.41
2451 2705 1.167851 CATGGACGGTGCTTTCATGT 58.832 50.000 0.31 0.00 32.86 3.21
2501 2755 1.218047 CCTTCGGCGTCAAGATGGA 59.782 57.895 6.85 0.00 34.67 3.41
2514 2768 6.312918 GCGTCAAGATGGAAGTGTAATCTTTA 59.687 38.462 0.00 0.00 38.33 1.85
2521 2775 6.741992 TGGAAGTGTAATCTTTACAGCATG 57.258 37.500 0.51 0.00 46.00 4.06
2539 2793 7.205737 CAGCATGCAGGTGTATATTCAATTA 57.794 36.000 21.98 0.00 40.80 1.40
2553 2807 4.733972 TTCAATTACAACGACGCATTGA 57.266 36.364 5.32 4.59 33.11 2.57
2575 2829 1.349627 CGGAACTGCATGCGATCAC 59.650 57.895 14.09 2.26 36.09 3.06
2591 2845 2.039974 CACGCAAGGCATGGCACTA 61.040 57.895 22.64 0.00 46.39 2.74
2605 2859 1.717937 CACTAGCCGTGCAGCATTC 59.282 57.895 0.00 0.00 36.72 2.67
2608 2862 0.376152 CTAGCCGTGCAGCATTCTTG 59.624 55.000 0.00 0.00 34.23 3.02
2624 2878 4.597404 TTCTTGCATGCCAATTGTTGTA 57.403 36.364 16.68 0.00 31.91 2.41
2659 2913 2.887360 GGCGTTGGCAGCATTGAT 59.113 55.556 1.39 0.00 42.47 2.57
2676 2930 0.393448 GATCGGGGAGAGCTTAACCC 59.607 60.000 13.24 13.24 42.58 4.11
2730 2984 2.603021 AGCATCATATGGAGACTCGGT 58.397 47.619 2.13 0.00 0.00 4.69
2875 3129 2.107378 TGGTGCCTCTTGATTGTAACCA 59.893 45.455 0.00 0.00 34.18 3.67
2909 3163 6.761714 TGGAATAAAACTCTCTTTCTATCGGC 59.238 38.462 0.00 0.00 0.00 5.54
2915 3169 7.454260 AAACTCTCTTTCTATCGGCAAAAAT 57.546 32.000 0.00 0.00 0.00 1.82
2964 3219 9.796120 AAAGTCAAATTCGTAAAGTTTGATCAA 57.204 25.926 3.38 3.38 41.98 2.57
2965 3220 9.450807 AAGTCAAATTCGTAAAGTTTGATCAAG 57.549 29.630 8.41 0.00 41.98 3.02
2966 3221 8.621286 AGTCAAATTCGTAAAGTTTGATCAAGT 58.379 29.630 8.41 0.00 41.98 3.16
2967 3222 9.233232 GTCAAATTCGTAAAGTTTGATCAAGTT 57.767 29.630 8.41 7.20 41.98 2.66
2968 3223 9.796120 TCAAATTCGTAAAGTTTGATCAAGTTT 57.204 25.926 17.29 17.29 40.52 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 3.895232 TGAACATACTCCTCCTGCTTC 57.105 47.619 0.00 0.00 0.00 3.86
45 46 4.583871 CTTTGAACATACTCCTCCTGCTT 58.416 43.478 0.00 0.00 0.00 3.91
46 47 3.620966 GCTTTGAACATACTCCTCCTGCT 60.621 47.826 0.00 0.00 0.00 4.24
48 49 3.942829 TGCTTTGAACATACTCCTCCTG 58.057 45.455 0.00 0.00 0.00 3.86
77 78 1.126113 CATCACGTTCGCCAACTACAC 59.874 52.381 0.00 0.00 0.00 2.90
78 79 1.000052 TCATCACGTTCGCCAACTACA 60.000 47.619 0.00 0.00 0.00 2.74
256 397 7.093771 TGTGATATACTCCATGCATGTAGTAGG 60.094 40.741 28.83 13.80 33.60 3.18
257 398 7.830739 TGTGATATACTCCATGCATGTAGTAG 58.169 38.462 28.83 20.23 33.60 2.57
258 399 7.775053 TGTGATATACTCCATGCATGTAGTA 57.225 36.000 27.90 27.90 34.41 1.82
259 400 6.670695 TGTGATATACTCCATGCATGTAGT 57.329 37.500 25.70 25.70 31.61 2.73
260 401 7.117379 CAGTTGTGATATACTCCATGCATGTAG 59.883 40.741 24.58 20.79 0.00 2.74
264 405 4.758674 GCAGTTGTGATATACTCCATGCAT 59.241 41.667 0.00 0.00 0.00 3.96
265 406 4.129380 GCAGTTGTGATATACTCCATGCA 58.871 43.478 0.00 0.00 0.00 3.96
266 407 4.129380 TGCAGTTGTGATATACTCCATGC 58.871 43.478 0.00 0.00 0.00 4.06
267 408 5.334646 GCATGCAGTTGTGATATACTCCATG 60.335 44.000 14.21 3.73 0.00 3.66
268 409 4.758674 GCATGCAGTTGTGATATACTCCAT 59.241 41.667 14.21 0.00 0.00 3.41
269 410 4.129380 GCATGCAGTTGTGATATACTCCA 58.871 43.478 14.21 0.00 0.00 3.86
270 411 4.129380 TGCATGCAGTTGTGATATACTCC 58.871 43.478 18.46 0.00 0.00 3.85
271 412 5.686834 CATGCATGCAGTTGTGATATACTC 58.313 41.667 26.69 0.00 0.00 2.59
272 413 5.684550 CATGCATGCAGTTGTGATATACT 57.315 39.130 26.69 0.61 0.00 2.12
335 476 2.365768 GGGAGGGGAGGTCAGTCC 60.366 72.222 0.00 0.00 35.64 3.85
363 509 2.007608 GTTAGGTCAAGTGGATTCGGC 58.992 52.381 0.00 0.00 0.00 5.54
442 611 2.383527 CCGAGCTGTTTCGCTGTCC 61.384 63.158 0.00 0.00 41.08 4.02
473 652 4.435970 TCGACGGGGAGCTGGCTA 62.436 66.667 0.00 0.00 0.00 3.93
582 768 0.685458 ACTGGCAGGGCAAATGGATC 60.685 55.000 20.34 0.00 0.00 3.36
590 776 1.613255 GCTTAGTTTACTGGCAGGGCA 60.613 52.381 20.34 0.01 0.00 5.36
591 777 1.095600 GCTTAGTTTACTGGCAGGGC 58.904 55.000 20.34 5.65 0.00 5.19
608 794 1.762460 CCATACCTCTGGACCGGCT 60.762 63.158 0.00 0.00 38.69 5.52
609 795 2.822399 CCATACCTCTGGACCGGC 59.178 66.667 0.00 0.00 38.69 6.13
610 796 2.808206 GGCCATACCTCTGGACCGG 61.808 68.421 0.00 0.00 38.50 5.28
611 797 2.063979 TGGCCATACCTCTGGACCG 61.064 63.158 0.00 0.00 44.44 4.79
612 798 1.527370 GTGGCCATACCTCTGGACC 59.473 63.158 9.72 0.00 44.44 4.46
694 882 1.452833 GCTTCCTAGCTGGGCAAGG 60.453 63.158 21.29 10.72 44.27 3.61
698 886 4.554036 CGGGCTTCCTAGCTGGGC 62.554 72.222 12.10 0.00 46.90 5.36
765 960 1.377202 TCGAGCCATTGTGGAAGCC 60.377 57.895 0.00 0.00 40.96 4.35
804 1002 3.286751 CCACACGGGTTGCCACAG 61.287 66.667 0.00 0.00 0.00 3.66
870 1068 0.106918 CTTTTATAGGCGGCCACCCA 60.107 55.000 23.09 3.28 0.00 4.51
873 1071 1.594331 CTCCTTTTATAGGCGGCCAC 58.406 55.000 23.09 0.00 44.37 5.01
874 1072 0.472471 CCTCCTTTTATAGGCGGCCA 59.528 55.000 23.09 7.74 41.88 5.36
880 1086 1.348036 CTCGGGGCCTCCTTTTATAGG 59.652 57.143 0.84 0.00 46.27 2.57
929 1135 2.682494 GGGAGGAGTGCGTGGGTA 60.682 66.667 0.00 0.00 0.00 3.69
932 1138 3.302347 GACTGGGAGGAGTGCGTGG 62.302 68.421 0.00 0.00 0.00 4.94
938 1144 2.252714 GAAGTGAAGACTGGGAGGAGT 58.747 52.381 0.00 0.00 30.61 3.85
944 1150 1.338579 GCAGAGGAAGTGAAGACTGGG 60.339 57.143 0.00 0.00 30.61 4.45
945 1151 1.622811 AGCAGAGGAAGTGAAGACTGG 59.377 52.381 0.00 0.00 30.61 4.00
946 1152 2.353605 GGAGCAGAGGAAGTGAAGACTG 60.354 54.545 0.00 0.00 30.61 3.51
974 1188 4.168291 GCTGAGCTCGGGAAGGGG 62.168 72.222 23.87 0.79 0.00 4.79
991 1208 3.277602 CTGCGCCATGGCTAGCTG 61.278 66.667 33.07 27.02 39.32 4.24
1037 1257 3.385384 CGCAGAGGAGGACCAGCA 61.385 66.667 0.00 0.00 38.94 4.41
1308 1546 3.756963 ACATGTTACGTCTGCTCTACTGA 59.243 43.478 0.00 0.00 0.00 3.41
1309 1547 4.098055 ACATGTTACGTCTGCTCTACTG 57.902 45.455 0.00 0.00 0.00 2.74
1310 1548 4.011023 AGACATGTTACGTCTGCTCTACT 58.989 43.478 0.00 0.00 42.12 2.57
1311 1549 4.358494 AGACATGTTACGTCTGCTCTAC 57.642 45.455 0.00 0.00 42.12 2.59
1347 1585 2.032528 ACGACCCACAGTGCATGG 59.967 61.111 0.00 0.00 36.94 3.66
1383 1621 1.552337 TCTCTTCTCTTGGCAGCGAAT 59.448 47.619 0.00 0.00 0.00 3.34
1384 1622 0.969149 TCTCTTCTCTTGGCAGCGAA 59.031 50.000 0.00 0.00 0.00 4.70
1482 1720 1.221414 GCTATAGTGGCGCAAGGAAG 58.779 55.000 10.83 0.00 38.28 3.46
1485 1723 0.657840 GTTGCTATAGTGGCGCAAGG 59.342 55.000 10.83 0.00 43.45 3.61
1488 1726 0.249120 AGTGTTGCTATAGTGGCGCA 59.751 50.000 10.83 0.00 0.00 6.09
1500 1738 1.374758 CTCCGTCCCAGAGTGTTGC 60.375 63.158 0.00 0.00 0.00 4.17
1501 1739 1.374758 GCTCCGTCCCAGAGTGTTG 60.375 63.158 0.00 0.00 33.69 3.33
1503 1741 2.997897 GGCTCCGTCCCAGAGTGT 60.998 66.667 0.00 0.00 33.69 3.55
1510 1748 0.323451 AAATTTCCTGGCTCCGTCCC 60.323 55.000 0.00 0.00 0.00 4.46
1512 1750 1.402852 GCAAAATTTCCTGGCTCCGTC 60.403 52.381 0.00 0.00 0.00 4.79
1514 1752 0.890683 AGCAAAATTTCCTGGCTCCG 59.109 50.000 0.00 0.00 0.00 4.63
1515 1753 4.436332 CATTAGCAAAATTTCCTGGCTCC 58.564 43.478 9.10 0.00 36.10 4.70
1516 1754 4.160252 TCCATTAGCAAAATTTCCTGGCTC 59.840 41.667 9.10 0.00 36.10 4.70
1517 1755 4.095946 TCCATTAGCAAAATTTCCTGGCT 58.904 39.130 10.24 10.24 38.55 4.75
1518 1756 4.470334 TCCATTAGCAAAATTTCCTGGC 57.530 40.909 0.00 0.00 0.00 4.85
1519 1757 5.750067 CGAATCCATTAGCAAAATTTCCTGG 59.250 40.000 0.00 0.00 0.00 4.45
1521 1759 5.127682 AGCGAATCCATTAGCAAAATTTCCT 59.872 36.000 7.09 0.00 40.26 3.36
1523 1761 7.168135 CCTTAGCGAATCCATTAGCAAAATTTC 59.832 37.037 7.09 0.00 40.26 2.17
1524 1762 6.980397 CCTTAGCGAATCCATTAGCAAAATTT 59.020 34.615 7.09 0.00 40.26 1.82
1525 1763 6.461509 CCCTTAGCGAATCCATTAGCAAAATT 60.462 38.462 7.09 0.00 40.26 1.82
1526 1764 5.010012 CCCTTAGCGAATCCATTAGCAAAAT 59.990 40.000 7.09 0.00 40.26 1.82
1527 1765 4.338118 CCCTTAGCGAATCCATTAGCAAAA 59.662 41.667 7.09 1.19 40.26 2.44
1528 1766 3.882888 CCCTTAGCGAATCCATTAGCAAA 59.117 43.478 7.09 0.00 40.26 3.68
1529 1767 3.118038 ACCCTTAGCGAATCCATTAGCAA 60.118 43.478 7.09 0.21 40.26 3.91
1531 1769 3.127425 ACCCTTAGCGAATCCATTAGC 57.873 47.619 0.00 0.00 38.46 3.09
1532 1770 6.766467 ACTTAAACCCTTAGCGAATCCATTAG 59.234 38.462 0.00 0.00 0.00 1.73
1534 1772 5.506708 ACTTAAACCCTTAGCGAATCCATT 58.493 37.500 0.00 0.00 0.00 3.16
1535 1773 5.112129 ACTTAAACCCTTAGCGAATCCAT 57.888 39.130 0.00 0.00 0.00 3.41
1536 1774 4.563140 ACTTAAACCCTTAGCGAATCCA 57.437 40.909 0.00 0.00 0.00 3.41
1537 1775 6.285990 TCATACTTAAACCCTTAGCGAATCC 58.714 40.000 0.00 0.00 0.00 3.01
1538 1776 7.781548 TTCATACTTAAACCCTTAGCGAATC 57.218 36.000 0.00 0.00 0.00 2.52
1539 1777 8.747538 AATTCATACTTAAACCCTTAGCGAAT 57.252 30.769 0.00 0.00 0.00 3.34
1540 1778 9.669887 TTAATTCATACTTAAACCCTTAGCGAA 57.330 29.630 0.00 0.00 0.00 4.70
1541 1779 9.101655 GTTAATTCATACTTAAACCCTTAGCGA 57.898 33.333 0.00 0.00 0.00 4.93
1542 1780 9.106070 AGTTAATTCATACTTAAACCCTTAGCG 57.894 33.333 0.00 0.00 0.00 4.26
1557 1795 9.845740 ACCACTGCATACAATAGTTAATTCATA 57.154 29.630 0.00 0.00 0.00 2.15
1558 1796 8.623903 CACCACTGCATACAATAGTTAATTCAT 58.376 33.333 0.00 0.00 0.00 2.57
1559 1797 7.066887 CCACCACTGCATACAATAGTTAATTCA 59.933 37.037 0.00 0.00 0.00 2.57
1560 1798 7.282224 TCCACCACTGCATACAATAGTTAATTC 59.718 37.037 0.00 0.00 0.00 2.17
1561 1799 7.116075 TCCACCACTGCATACAATAGTTAATT 58.884 34.615 0.00 0.00 0.00 1.40
1562 1800 6.658849 TCCACCACTGCATACAATAGTTAAT 58.341 36.000 0.00 0.00 0.00 1.40
1563 1801 6.056090 TCCACCACTGCATACAATAGTTAA 57.944 37.500 0.00 0.00 0.00 2.01
1564 1802 5.188948 ACTCCACCACTGCATACAATAGTTA 59.811 40.000 0.00 0.00 0.00 2.24
1565 1803 4.019321 ACTCCACCACTGCATACAATAGTT 60.019 41.667 0.00 0.00 0.00 2.24
1566 1804 3.519510 ACTCCACCACTGCATACAATAGT 59.480 43.478 0.00 0.00 0.00 2.12
1567 1805 4.142609 ACTCCACCACTGCATACAATAG 57.857 45.455 0.00 0.00 0.00 1.73
1568 1806 4.568072 AACTCCACCACTGCATACAATA 57.432 40.909 0.00 0.00 0.00 1.90
1569 1807 3.439857 AACTCCACCACTGCATACAAT 57.560 42.857 0.00 0.00 0.00 2.71
1570 1808 2.884012 CAAACTCCACCACTGCATACAA 59.116 45.455 0.00 0.00 0.00 2.41
1571 1809 2.503331 CAAACTCCACCACTGCATACA 58.497 47.619 0.00 0.00 0.00 2.29
1572 1810 1.200020 GCAAACTCCACCACTGCATAC 59.800 52.381 0.00 0.00 33.19 2.39
1573 1811 1.073763 AGCAAACTCCACCACTGCATA 59.926 47.619 0.00 0.00 35.44 3.14
1574 1812 0.178981 AGCAAACTCCACCACTGCAT 60.179 50.000 0.00 0.00 35.44 3.96
1575 1813 0.472044 TAGCAAACTCCACCACTGCA 59.528 50.000 0.00 0.00 35.44 4.41
1576 1814 1.160137 CTAGCAAACTCCACCACTGC 58.840 55.000 0.00 0.00 0.00 4.40
1577 1815 2.839486 TCTAGCAAACTCCACCACTG 57.161 50.000 0.00 0.00 0.00 3.66
1578 1816 3.857157 TTTCTAGCAAACTCCACCACT 57.143 42.857 0.00 0.00 0.00 4.00
1579 1817 5.453567 AAATTTCTAGCAAACTCCACCAC 57.546 39.130 0.00 0.00 0.00 4.16
1580 1818 4.522789 GGAAATTTCTAGCAAACTCCACCA 59.477 41.667 17.42 0.00 0.00 4.17
1581 1819 4.522789 TGGAAATTTCTAGCAAACTCCACC 59.477 41.667 17.42 0.00 0.00 4.61
1582 1820 5.705609 TGGAAATTTCTAGCAAACTCCAC 57.294 39.130 17.42 0.00 0.00 4.02
1583 1821 9.693739 TTATATGGAAATTTCTAGCAAACTCCA 57.306 29.630 17.42 9.80 36.23 3.86
1589 1827 8.721478 GCGAGATTATATGGAAATTTCTAGCAA 58.279 33.333 17.42 7.70 0.00 3.91
1590 1828 8.097038 AGCGAGATTATATGGAAATTTCTAGCA 58.903 33.333 17.42 7.97 0.00 3.49
1591 1829 8.485976 AGCGAGATTATATGGAAATTTCTAGC 57.514 34.615 17.42 8.07 0.00 3.42
1633 1871 2.040935 ATTGGCCCCCAACCATGG 59.959 61.111 11.19 11.19 46.95 3.66
1634 1872 3.033919 GCATTGGCCCCCAACCATG 62.034 63.158 0.00 0.00 46.95 3.66
1635 1873 2.688299 GCATTGGCCCCCAACCAT 60.688 61.111 0.00 0.00 46.95 3.55
1660 1898 5.003804 CCTTCGAATAATGTTATGAGGGGG 58.996 45.833 0.00 0.00 0.00 5.40
1661 1899 5.003804 CCCTTCGAATAATGTTATGAGGGG 58.996 45.833 0.00 0.00 0.00 4.79
1662 1900 5.003804 CCCCTTCGAATAATGTTATGAGGG 58.996 45.833 0.00 0.29 0.00 4.30
1663 1901 5.621193 ACCCCTTCGAATAATGTTATGAGG 58.379 41.667 0.00 0.00 0.00 3.86
1664 1902 6.288294 TGACCCCTTCGAATAATGTTATGAG 58.712 40.000 0.00 0.00 0.00 2.90
1665 1903 6.241882 TGACCCCTTCGAATAATGTTATGA 57.758 37.500 0.00 0.00 0.00 2.15
1666 1904 7.445402 AGAATGACCCCTTCGAATAATGTTATG 59.555 37.037 0.00 0.00 0.00 1.90
1667 1905 7.518188 AGAATGACCCCTTCGAATAATGTTAT 58.482 34.615 0.00 0.00 0.00 1.89
1668 1906 6.895782 AGAATGACCCCTTCGAATAATGTTA 58.104 36.000 0.00 0.00 0.00 2.41
1669 1907 5.755849 AGAATGACCCCTTCGAATAATGTT 58.244 37.500 0.00 0.00 0.00 2.71
1670 1908 5.373812 AGAATGACCCCTTCGAATAATGT 57.626 39.130 0.00 0.00 0.00 2.71
1671 1909 6.647067 GTCTAGAATGACCCCTTCGAATAATG 59.353 42.308 0.00 0.00 0.00 1.90
1672 1910 6.760291 GTCTAGAATGACCCCTTCGAATAAT 58.240 40.000 0.00 0.00 0.00 1.28
1673 1911 6.158023 GTCTAGAATGACCCCTTCGAATAA 57.842 41.667 0.00 0.00 0.00 1.40
1674 1912 5.786264 GTCTAGAATGACCCCTTCGAATA 57.214 43.478 0.00 0.00 0.00 1.75
1675 1913 4.674281 GTCTAGAATGACCCCTTCGAAT 57.326 45.455 0.00 0.00 0.00 3.34
1685 1923 7.255660 CCACCTACATAGAAGGTCTAGAATGAC 60.256 44.444 6.81 0.00 44.20 3.06
1686 1924 6.778069 CCACCTACATAGAAGGTCTAGAATGA 59.222 42.308 6.81 0.00 44.20 2.57
1687 1925 6.517529 GCCACCTACATAGAAGGTCTAGAATG 60.518 46.154 0.00 0.00 44.20 2.67
1688 1926 5.540719 GCCACCTACATAGAAGGTCTAGAAT 59.459 44.000 0.00 0.00 44.20 2.40
1689 1927 4.894114 GCCACCTACATAGAAGGTCTAGAA 59.106 45.833 0.00 0.00 44.20 2.10
1690 1928 4.079385 TGCCACCTACATAGAAGGTCTAGA 60.079 45.833 0.00 0.00 44.20 2.43
1691 1929 4.215908 TGCCACCTACATAGAAGGTCTAG 58.784 47.826 0.00 0.00 44.20 2.43
1692 1930 4.079385 TCTGCCACCTACATAGAAGGTCTA 60.079 45.833 0.00 0.00 44.20 2.59
1693 1931 3.034635 CTGCCACCTACATAGAAGGTCT 58.965 50.000 0.00 0.00 44.20 3.85
1694 1932 3.031736 TCTGCCACCTACATAGAAGGTC 58.968 50.000 0.00 0.00 44.20 3.85
1696 1934 5.808366 TTATCTGCCACCTACATAGAAGG 57.192 43.478 0.00 0.00 40.20 3.46
1697 1935 8.153550 AGAATTTATCTGCCACCTACATAGAAG 58.846 37.037 0.00 0.00 36.88 2.85
1698 1936 8.034313 AGAATTTATCTGCCACCTACATAGAA 57.966 34.615 0.00 0.00 36.88 2.10
1699 1937 7.618019 AGAATTTATCTGCCACCTACATAGA 57.382 36.000 0.00 0.00 36.88 1.98
1700 1938 9.950496 AATAGAATTTATCTGCCACCTACATAG 57.050 33.333 0.00 0.00 39.30 2.23
1701 1939 9.725019 CAATAGAATTTATCTGCCACCTACATA 57.275 33.333 0.00 0.00 39.30 2.29
1702 1940 7.667219 CCAATAGAATTTATCTGCCACCTACAT 59.333 37.037 0.00 0.00 39.30 2.29
1703 1941 6.998074 CCAATAGAATTTATCTGCCACCTACA 59.002 38.462 0.00 0.00 39.30 2.74
1704 1942 6.431234 CCCAATAGAATTTATCTGCCACCTAC 59.569 42.308 0.00 0.00 39.30 3.18
1705 1943 6.102615 ACCCAATAGAATTTATCTGCCACCTA 59.897 38.462 0.00 0.00 39.30 3.08
1706 1944 5.103515 ACCCAATAGAATTTATCTGCCACCT 60.104 40.000 0.00 0.00 39.30 4.00
1707 1945 5.140454 ACCCAATAGAATTTATCTGCCACC 58.860 41.667 0.00 0.00 39.30 4.61
1708 1946 6.321181 TGAACCCAATAGAATTTATCTGCCAC 59.679 38.462 0.00 0.00 39.30 5.01
1709 1947 6.321181 GTGAACCCAATAGAATTTATCTGCCA 59.679 38.462 0.00 0.00 39.30 4.92
1710 1948 6.547510 AGTGAACCCAATAGAATTTATCTGCC 59.452 38.462 0.00 0.00 39.30 4.85
1711 1949 7.573968 AGTGAACCCAATAGAATTTATCTGC 57.426 36.000 0.00 0.00 39.30 4.26
1712 1950 9.177608 TCAAGTGAACCCAATAGAATTTATCTG 57.822 33.333 0.00 0.00 39.30 2.90
1713 1951 9.753674 TTCAAGTGAACCCAATAGAATTTATCT 57.246 29.630 0.00 0.00 42.48 1.98
1714 1952 9.788960 GTTCAAGTGAACCCAATAGAATTTATC 57.211 33.333 12.29 0.00 46.42 1.75
1730 1968 3.976015 AGAAAGGTTGGGTTCAAGTGAA 58.024 40.909 0.00 0.00 32.92 3.18
1731 1969 3.662759 AGAAAGGTTGGGTTCAAGTGA 57.337 42.857 0.00 0.00 32.92 3.41
1732 1970 3.250040 CGTAGAAAGGTTGGGTTCAAGTG 59.750 47.826 0.00 0.00 32.92 3.16
1733 1971 3.473625 CGTAGAAAGGTTGGGTTCAAGT 58.526 45.455 0.00 0.00 32.92 3.16
1734 1972 2.225727 GCGTAGAAAGGTTGGGTTCAAG 59.774 50.000 0.00 0.00 32.92 3.02
1735 1973 2.158726 AGCGTAGAAAGGTTGGGTTCAA 60.159 45.455 0.00 0.00 0.00 2.69
1736 1974 1.418637 AGCGTAGAAAGGTTGGGTTCA 59.581 47.619 0.00 0.00 0.00 3.18
1737 1975 1.804748 CAGCGTAGAAAGGTTGGGTTC 59.195 52.381 0.00 0.00 0.00 3.62
1738 1976 1.544759 CCAGCGTAGAAAGGTTGGGTT 60.545 52.381 0.00 0.00 37.98 4.11
1739 1977 0.036306 CCAGCGTAGAAAGGTTGGGT 59.964 55.000 0.00 0.00 37.98 4.51
1740 1978 1.305930 GCCAGCGTAGAAAGGTTGGG 61.306 60.000 3.69 0.00 40.89 4.12
1741 1979 0.321653 AGCCAGCGTAGAAAGGTTGG 60.322 55.000 0.00 0.00 42.75 3.77
1742 1980 1.079503 GAGCCAGCGTAGAAAGGTTG 58.920 55.000 0.00 0.00 0.00 3.77
1743 1981 0.036294 GGAGCCAGCGTAGAAAGGTT 60.036 55.000 0.00 0.00 0.00 3.50
1744 1982 1.597461 GGAGCCAGCGTAGAAAGGT 59.403 57.895 0.00 0.00 0.00 3.50
1745 1983 1.519455 CGGAGCCAGCGTAGAAAGG 60.519 63.158 0.00 0.00 0.00 3.11
1746 1984 4.094684 CGGAGCCAGCGTAGAAAG 57.905 61.111 0.00 0.00 0.00 2.62
1764 2002 3.363341 AATAAACAGTGTTGCCAACGG 57.637 42.857 9.79 0.00 0.00 4.44
1765 2003 5.040635 AGAAAATAAACAGTGTTGCCAACG 58.959 37.500 9.79 0.00 0.00 4.10
1766 2004 5.173131 CGAGAAAATAAACAGTGTTGCCAAC 59.827 40.000 9.79 0.00 0.00 3.77
1767 2005 5.163602 ACGAGAAAATAAACAGTGTTGCCAA 60.164 36.000 9.79 0.00 0.00 4.52
1768 2006 4.336993 ACGAGAAAATAAACAGTGTTGCCA 59.663 37.500 9.79 0.00 0.00 4.92
1769 2007 4.855531 ACGAGAAAATAAACAGTGTTGCC 58.144 39.130 9.79 0.00 0.00 4.52
1770 2008 5.558888 CGTACGAGAAAATAAACAGTGTTGC 59.441 40.000 10.44 0.00 0.00 4.17
1771 2009 6.642917 ACGTACGAGAAAATAAACAGTGTTG 58.357 36.000 24.41 0.00 0.00 3.33
1772 2010 6.074142 GGACGTACGAGAAAATAAACAGTGTT 60.074 38.462 24.41 1.64 0.00 3.32
1773 2011 5.403466 GGACGTACGAGAAAATAAACAGTGT 59.597 40.000 24.41 0.00 0.00 3.55
1774 2012 5.442390 CGGACGTACGAGAAAATAAACAGTG 60.442 44.000 24.41 0.00 35.47 3.66
1775 2013 4.618489 CGGACGTACGAGAAAATAAACAGT 59.382 41.667 24.41 0.00 35.47 3.55
1776 2014 4.618489 ACGGACGTACGAGAAAATAAACAG 59.382 41.667 30.05 0.00 37.61 3.16
1777 2015 4.382457 CACGGACGTACGAGAAAATAAACA 59.618 41.667 30.05 0.00 37.61 2.83
1778 2016 4.719276 GCACGGACGTACGAGAAAATAAAC 60.719 45.833 30.05 0.00 37.61 2.01
1779 2017 3.364621 GCACGGACGTACGAGAAAATAAA 59.635 43.478 30.05 0.00 37.61 1.40
1780 2018 2.916716 GCACGGACGTACGAGAAAATAA 59.083 45.455 30.05 0.00 37.61 1.40
1781 2019 2.162208 AGCACGGACGTACGAGAAAATA 59.838 45.455 30.05 0.00 37.61 1.40
1782 2020 1.068055 AGCACGGACGTACGAGAAAAT 60.068 47.619 30.05 0.00 37.61 1.82
1783 2021 0.311790 AGCACGGACGTACGAGAAAA 59.688 50.000 30.05 0.00 37.61 2.29
1784 2022 1.155889 TAGCACGGACGTACGAGAAA 58.844 50.000 30.05 7.77 37.61 2.52
1785 2023 1.135972 GTTAGCACGGACGTACGAGAA 60.136 52.381 30.05 11.73 37.61 2.87
1786 2024 0.443869 GTTAGCACGGACGTACGAGA 59.556 55.000 30.05 5.52 37.61 4.04
1787 2025 0.445436 AGTTAGCACGGACGTACGAG 59.555 55.000 30.05 21.56 37.61 4.18
1788 2026 0.874390 AAGTTAGCACGGACGTACGA 59.126 50.000 30.05 0.00 37.61 3.43
1789 2027 0.979811 CAAGTTAGCACGGACGTACG 59.020 55.000 20.85 20.85 40.31 3.67
1790 2028 1.717645 CACAAGTTAGCACGGACGTAC 59.282 52.381 0.00 0.00 0.00 3.67
1791 2029 1.336148 CCACAAGTTAGCACGGACGTA 60.336 52.381 0.00 0.00 0.00 3.57
1792 2030 0.599204 CCACAAGTTAGCACGGACGT 60.599 55.000 0.00 0.00 0.00 4.34
1793 2031 1.289109 CCCACAAGTTAGCACGGACG 61.289 60.000 0.00 0.00 0.00 4.79
1794 2032 1.574702 GCCCACAAGTTAGCACGGAC 61.575 60.000 0.00 0.00 0.00 4.79
1795 2033 1.302192 GCCCACAAGTTAGCACGGA 60.302 57.895 0.00 0.00 0.00 4.69
1796 2034 1.302511 AGCCCACAAGTTAGCACGG 60.303 57.895 0.00 0.00 0.00 4.94
1860 2104 4.164087 ACCGCCACCACGTTGTGA 62.164 61.111 20.48 0.00 38.55 3.58
1957 2201 4.382320 GTAGTTGGTGCCGCGGGA 62.382 66.667 29.38 24.35 0.00 5.14
2085 2332 7.043192 TCGAAGACGGAAAGTAAACTAAAGTTG 60.043 37.037 0.00 0.00 37.97 3.16
2104 2351 5.330295 TCGTAGCTTCAGTAAATCGAAGAC 58.670 41.667 0.00 0.00 42.51 3.01
2112 2359 3.985008 TGCAGTTCGTAGCTTCAGTAAA 58.015 40.909 0.00 0.00 0.00 2.01
2114 2361 3.192633 TCATGCAGTTCGTAGCTTCAGTA 59.807 43.478 0.00 0.00 0.00 2.74
2124 2371 1.280982 CTACGCATCATGCAGTTCGT 58.719 50.000 11.00 1.12 45.36 3.85
2125 2372 1.280982 ACTACGCATCATGCAGTTCG 58.719 50.000 11.00 6.31 45.36 3.95
2126 2373 2.216488 CGTACTACGCATCATGCAGTTC 59.784 50.000 11.00 3.69 45.36 3.01
2127 2374 2.193447 CGTACTACGCATCATGCAGTT 58.807 47.619 11.00 0.00 45.36 3.16
2155 2402 3.836151 GGGACGCGGGCATTTTAT 58.164 55.556 12.47 0.00 0.00 1.40
2168 2415 2.490685 GAACTCGAGAGCCGGGAC 59.509 66.667 21.68 0.00 42.61 4.46
2169 2416 3.132139 CGAACTCGAGAGCCGGGA 61.132 66.667 21.68 0.00 42.61 5.14
2170 2417 3.441290 ACGAACTCGAGAGCCGGG 61.441 66.667 21.68 4.40 46.23 5.73
2171 2418 2.202492 CACGAACTCGAGAGCCGG 60.202 66.667 21.68 0.00 43.02 6.13
2172 2419 2.202492 CCACGAACTCGAGAGCCG 60.202 66.667 21.68 19.69 43.02 5.52
2173 2420 2.182030 CCCACGAACTCGAGAGCC 59.818 66.667 21.68 6.42 43.02 4.70
2174 2421 1.444553 CACCCACGAACTCGAGAGC 60.445 63.158 21.68 9.31 43.02 4.09
2175 2422 0.314302 AACACCCACGAACTCGAGAG 59.686 55.000 21.68 12.29 43.02 3.20
2176 2423 0.031585 CAACACCCACGAACTCGAGA 59.968 55.000 21.68 0.00 43.02 4.04
2177 2424 0.944311 CCAACACCCACGAACTCGAG 60.944 60.000 11.84 11.84 43.02 4.04
2178 2425 1.068417 CCAACACCCACGAACTCGA 59.932 57.895 6.05 0.00 43.02 4.04
2209 2456 4.966965 TTTCTCTCGAGCTAGTACCAAG 57.033 45.455 7.81 0.00 0.00 3.61
2214 2461 8.723311 GCTCTATTAATTTCTCTCGAGCTAGTA 58.277 37.037 7.81 0.00 39.47 1.82
2222 2469 6.814076 AACACGCTCTATTAATTTCTCTCG 57.186 37.500 0.00 0.00 0.00 4.04
2229 2476 5.856455 GCACACAAAACACGCTCTATTAATT 59.144 36.000 0.00 0.00 0.00 1.40
2237 2484 0.098728 ACTGCACACAAAACACGCTC 59.901 50.000 0.00 0.00 0.00 5.03
2238 2485 0.179166 CACTGCACACAAAACACGCT 60.179 50.000 0.00 0.00 0.00 5.07
2239 2486 1.741947 GCACTGCACACAAAACACGC 61.742 55.000 0.00 0.00 0.00 5.34
2240 2487 0.455802 TGCACTGCACACAAAACACG 60.456 50.000 0.00 0.00 31.71 4.49
2241 2488 3.415237 TGCACTGCACACAAAACAC 57.585 47.368 0.00 0.00 31.71 3.32
2251 2498 2.050639 CTTTGCTCACGTGCACTGCA 62.051 55.000 16.19 16.00 43.20 4.41
2252 2499 1.369689 CTTTGCTCACGTGCACTGC 60.370 57.895 16.19 13.66 43.20 4.40
2253 2500 1.159713 TCCTTTGCTCACGTGCACTG 61.160 55.000 16.19 12.16 43.20 3.66
2254 2501 0.463654 TTCCTTTGCTCACGTGCACT 60.464 50.000 16.19 0.00 43.20 4.40
2255 2502 0.593128 ATTCCTTTGCTCACGTGCAC 59.407 50.000 11.67 6.82 43.20 4.57
2256 2503 2.177394 TATTCCTTTGCTCACGTGCA 57.823 45.000 11.67 2.98 41.65 4.57
2257 2504 2.484264 AGTTATTCCTTTGCTCACGTGC 59.516 45.455 11.67 0.00 0.00 5.34
2258 2505 3.997021 AGAGTTATTCCTTTGCTCACGTG 59.003 43.478 9.94 9.94 0.00 4.49
2259 2506 3.997021 CAGAGTTATTCCTTTGCTCACGT 59.003 43.478 0.00 0.00 0.00 4.49
2260 2507 3.372206 CCAGAGTTATTCCTTTGCTCACG 59.628 47.826 0.00 0.00 0.00 4.35
2261 2508 4.154918 CACCAGAGTTATTCCTTTGCTCAC 59.845 45.833 0.00 0.00 0.00 3.51
2262 2509 4.202461 ACACCAGAGTTATTCCTTTGCTCA 60.202 41.667 0.00 0.00 0.00 4.26
2263 2510 4.327680 ACACCAGAGTTATTCCTTTGCTC 58.672 43.478 0.00 0.00 0.00 4.26
2264 2511 4.373156 ACACCAGAGTTATTCCTTTGCT 57.627 40.909 0.00 0.00 0.00 3.91
2265 2512 4.082733 GGAACACCAGAGTTATTCCTTTGC 60.083 45.833 0.00 0.00 36.65 3.68
2266 2513 4.154195 CGGAACACCAGAGTTATTCCTTTG 59.846 45.833 0.00 0.00 37.31 2.77
2267 2514 4.324267 CGGAACACCAGAGTTATTCCTTT 58.676 43.478 0.00 0.00 37.31 3.11
2268 2515 3.307480 CCGGAACACCAGAGTTATTCCTT 60.307 47.826 0.00 0.00 37.31 3.36
2269 2516 2.236395 CCGGAACACCAGAGTTATTCCT 59.764 50.000 0.00 0.00 37.31 3.36
2270 2517 2.027469 ACCGGAACACCAGAGTTATTCC 60.027 50.000 9.46 0.00 36.31 3.01
2271 2518 3.329929 ACCGGAACACCAGAGTTATTC 57.670 47.619 9.46 0.00 0.00 1.75
2272 2519 3.181448 ACAACCGGAACACCAGAGTTATT 60.181 43.478 9.46 0.00 0.00 1.40
2273 2520 2.370849 ACAACCGGAACACCAGAGTTAT 59.629 45.455 9.46 0.00 0.00 1.89
2274 2521 1.764134 ACAACCGGAACACCAGAGTTA 59.236 47.619 9.46 0.00 0.00 2.24
2275 2522 0.544697 ACAACCGGAACACCAGAGTT 59.455 50.000 9.46 0.00 0.00 3.01
2276 2523 0.179056 CACAACCGGAACACCAGAGT 60.179 55.000 9.46 0.00 0.00 3.24
2277 2524 0.179056 ACACAACCGGAACACCAGAG 60.179 55.000 9.46 0.00 0.00 3.35
2278 2525 0.462937 CACACAACCGGAACACCAGA 60.463 55.000 9.46 0.00 0.00 3.86
2279 2526 0.746563 ACACACAACCGGAACACCAG 60.747 55.000 9.46 0.00 0.00 4.00
2280 2527 1.027255 CACACACAACCGGAACACCA 61.027 55.000 9.46 0.00 0.00 4.17
2281 2528 1.725066 CACACACAACCGGAACACC 59.275 57.895 9.46 0.00 0.00 4.16
2282 2529 1.063488 GCACACACAACCGGAACAC 59.937 57.895 9.46 0.00 0.00 3.32
2283 2530 0.678366 AAGCACACACAACCGGAACA 60.678 50.000 9.46 0.00 0.00 3.18
2284 2531 0.454196 AAAGCACACACAACCGGAAC 59.546 50.000 9.46 0.00 0.00 3.62
2285 2532 2.039818 TAAAGCACACACAACCGGAA 57.960 45.000 9.46 0.00 0.00 4.30
2286 2533 2.039818 TTAAAGCACACACAACCGGA 57.960 45.000 9.46 0.00 0.00 5.14
2287 2534 2.660490 CATTAAAGCACACACAACCGG 58.340 47.619 0.00 0.00 0.00 5.28
2288 2535 2.050691 GCATTAAAGCACACACAACCG 58.949 47.619 0.00 0.00 0.00 4.44
2289 2536 3.369546 AGCATTAAAGCACACACAACC 57.630 42.857 5.36 0.00 36.85 3.77
2290 2537 4.111916 ACAAGCATTAAAGCACACACAAC 58.888 39.130 5.36 0.00 36.85 3.32
2291 2538 4.383850 ACAAGCATTAAAGCACACACAA 57.616 36.364 5.36 0.00 36.85 3.33
2292 2539 5.703978 ATACAAGCATTAAAGCACACACA 57.296 34.783 5.36 0.00 36.85 3.72
2293 2540 7.471721 TGATATACAAGCATTAAAGCACACAC 58.528 34.615 5.36 0.00 36.85 3.82
2294 2541 7.552330 TCTGATATACAAGCATTAAAGCACACA 59.448 33.333 5.36 0.00 36.85 3.72
2295 2542 7.919690 TCTGATATACAAGCATTAAAGCACAC 58.080 34.615 5.36 0.00 36.85 3.82
2296 2543 8.681486 ATCTGATATACAAGCATTAAAGCACA 57.319 30.769 5.36 0.00 36.85 4.57
2297 2544 9.956720 AAATCTGATATACAAGCATTAAAGCAC 57.043 29.630 5.36 0.00 36.85 4.40
2306 2553 9.013229 ACAACTCAAAAATCTGATATACAAGCA 57.987 29.630 0.00 0.00 0.00 3.91
2307 2554 9.846248 AACAACTCAAAAATCTGATATACAAGC 57.154 29.630 0.00 0.00 0.00 4.01
2313 2560 8.849168 TCACACAACAACTCAAAAATCTGATAT 58.151 29.630 0.00 0.00 0.00 1.63
2314 2561 8.219546 TCACACAACAACTCAAAAATCTGATA 57.780 30.769 0.00 0.00 0.00 2.15
2315 2562 7.099266 TCACACAACAACTCAAAAATCTGAT 57.901 32.000 0.00 0.00 0.00 2.90
2316 2563 6.507958 TCACACAACAACTCAAAAATCTGA 57.492 33.333 0.00 0.00 0.00 3.27
2317 2564 7.760131 AATCACACAACAACTCAAAAATCTG 57.240 32.000 0.00 0.00 0.00 2.90
2318 2565 8.686334 AGTAATCACACAACAACTCAAAAATCT 58.314 29.630 0.00 0.00 0.00 2.40
2319 2566 8.856490 AGTAATCACACAACAACTCAAAAATC 57.144 30.769 0.00 0.00 0.00 2.17
2320 2567 8.465999 TGAGTAATCACACAACAACTCAAAAAT 58.534 29.630 0.74 0.00 40.10 1.82
2321 2568 7.821652 TGAGTAATCACACAACAACTCAAAAA 58.178 30.769 0.74 0.00 40.10 1.94
2322 2569 7.384439 TGAGTAATCACACAACAACTCAAAA 57.616 32.000 0.74 0.00 40.10 2.44
2323 2570 6.993786 TGAGTAATCACACAACAACTCAAA 57.006 33.333 0.74 0.00 40.10 2.69
2324 2571 6.204688 GGATGAGTAATCACACAACAACTCAA 59.795 38.462 7.02 0.00 44.48 3.02
2325 2572 5.700832 GGATGAGTAATCACACAACAACTCA 59.299 40.000 0.00 5.54 45.14 3.41
2326 2573 5.163953 CGGATGAGTAATCACACAACAACTC 60.164 44.000 0.00 0.00 36.98 3.01
2327 2574 4.690748 CGGATGAGTAATCACACAACAACT 59.309 41.667 0.00 0.00 36.98 3.16
2328 2575 4.451096 ACGGATGAGTAATCACACAACAAC 59.549 41.667 0.00 0.00 36.98 3.32
2329 2576 4.637276 ACGGATGAGTAATCACACAACAA 58.363 39.130 0.00 0.00 36.98 2.83
2330 2577 4.265904 ACGGATGAGTAATCACACAACA 57.734 40.909 0.00 0.00 36.98 3.33
2331 2578 5.408604 AGAAACGGATGAGTAATCACACAAC 59.591 40.000 0.00 0.00 36.98 3.32
2332 2579 5.547465 AGAAACGGATGAGTAATCACACAA 58.453 37.500 0.00 0.00 36.98 3.33
2333 2580 5.147330 AGAAACGGATGAGTAATCACACA 57.853 39.130 0.00 0.00 36.98 3.72
2334 2581 6.481954 AAAGAAACGGATGAGTAATCACAC 57.518 37.500 0.00 0.00 36.98 3.82
2335 2582 7.504924 AAAAAGAAACGGATGAGTAATCACA 57.495 32.000 0.00 0.00 36.98 3.58
2336 2583 8.718734 AGTAAAAAGAAACGGATGAGTAATCAC 58.281 33.333 0.00 0.00 36.98 3.06
2337 2584 8.842358 AGTAAAAAGAAACGGATGAGTAATCA 57.158 30.769 0.00 0.00 36.98 2.57
2338 2585 9.152595 AGAGTAAAAAGAAACGGATGAGTAATC 57.847 33.333 0.00 0.00 34.19 1.75
2339 2586 8.936864 CAGAGTAAAAAGAAACGGATGAGTAAT 58.063 33.333 0.00 0.00 0.00 1.89
2340 2587 7.929785 ACAGAGTAAAAAGAAACGGATGAGTAA 59.070 33.333 0.00 0.00 0.00 2.24
2341 2588 7.384115 CACAGAGTAAAAAGAAACGGATGAGTA 59.616 37.037 0.00 0.00 0.00 2.59
2342 2589 6.202954 CACAGAGTAAAAAGAAACGGATGAGT 59.797 38.462 0.00 0.00 0.00 3.41
2343 2590 6.593978 CACAGAGTAAAAAGAAACGGATGAG 58.406 40.000 0.00 0.00 0.00 2.90
2344 2591 5.049680 GCACAGAGTAAAAAGAAACGGATGA 60.050 40.000 0.00 0.00 0.00 2.92
2345 2592 5.147162 GCACAGAGTAAAAAGAAACGGATG 58.853 41.667 0.00 0.00 0.00 3.51
2346 2593 4.819630 TGCACAGAGTAAAAAGAAACGGAT 59.180 37.500 0.00 0.00 0.00 4.18
2347 2594 4.193090 TGCACAGAGTAAAAAGAAACGGA 58.807 39.130 0.00 0.00 0.00 4.69
2348 2595 4.545823 TGCACAGAGTAAAAAGAAACGG 57.454 40.909 0.00 0.00 0.00 4.44
2349 2596 7.352739 ACTTATGCACAGAGTAAAAAGAAACG 58.647 34.615 1.67 0.00 0.00 3.60
2353 2600 9.502091 ACATAACTTATGCACAGAGTAAAAAGA 57.498 29.630 8.47 0.00 39.79 2.52
2359 2606 9.378551 CCTTAAACATAACTTATGCACAGAGTA 57.621 33.333 8.47 0.00 39.79 2.59
2360 2607 7.148239 GCCTTAAACATAACTTATGCACAGAGT 60.148 37.037 8.47 0.00 39.79 3.24
2361 2608 7.189512 GCCTTAAACATAACTTATGCACAGAG 58.810 38.462 8.47 0.00 39.79 3.35
2362 2609 6.094881 GGCCTTAAACATAACTTATGCACAGA 59.905 38.462 8.47 0.00 39.79 3.41
2363 2610 6.265577 GGCCTTAAACATAACTTATGCACAG 58.734 40.000 8.47 0.00 39.79 3.66
2364 2611 5.163703 CGGCCTTAAACATAACTTATGCACA 60.164 40.000 0.00 0.00 39.79 4.57
2365 2612 5.065474 TCGGCCTTAAACATAACTTATGCAC 59.935 40.000 0.00 0.00 39.79 4.57
2366 2613 5.186942 TCGGCCTTAAACATAACTTATGCA 58.813 37.500 0.00 0.00 39.79 3.96
2367 2614 5.744666 TCGGCCTTAAACATAACTTATGC 57.255 39.130 0.00 0.00 39.79 3.14
2368 2615 5.295787 TGCTCGGCCTTAAACATAACTTATG 59.704 40.000 0.00 7.17 41.88 1.90
2369 2616 5.296035 GTGCTCGGCCTTAAACATAACTTAT 59.704 40.000 0.00 0.00 0.00 1.73
2370 2617 4.632688 GTGCTCGGCCTTAAACATAACTTA 59.367 41.667 0.00 0.00 0.00 2.24
2371 2618 3.439129 GTGCTCGGCCTTAAACATAACTT 59.561 43.478 0.00 0.00 0.00 2.66
2372 2619 3.007635 GTGCTCGGCCTTAAACATAACT 58.992 45.455 0.00 0.00 0.00 2.24
2373 2620 3.007635 AGTGCTCGGCCTTAAACATAAC 58.992 45.455 0.00 0.00 0.00 1.89
2374 2621 3.267483 GAGTGCTCGGCCTTAAACATAA 58.733 45.455 0.00 0.00 0.00 1.90
2375 2622 2.419574 GGAGTGCTCGGCCTTAAACATA 60.420 50.000 0.00 0.00 0.00 2.29
2376 2623 1.679032 GGAGTGCTCGGCCTTAAACAT 60.679 52.381 0.00 0.00 0.00 2.71
2377 2624 0.321298 GGAGTGCTCGGCCTTAAACA 60.321 55.000 0.00 0.00 0.00 2.83
2378 2625 0.036294 AGGAGTGCTCGGCCTTAAAC 60.036 55.000 0.00 0.00 0.00 2.01
2379 2626 0.690762 AAGGAGTGCTCGGCCTTAAA 59.309 50.000 12.35 0.00 40.10 1.52
2380 2627 0.690762 AAAGGAGTGCTCGGCCTTAA 59.309 50.000 13.77 0.00 40.97 1.85
2381 2628 0.036388 CAAAGGAGTGCTCGGCCTTA 60.036 55.000 13.77 0.00 40.97 2.69
2382 2629 1.302832 CAAAGGAGTGCTCGGCCTT 60.303 57.895 0.00 9.30 43.56 4.35
2422 2669 0.960364 ACCGTCCATGCAGCGAATTT 60.960 50.000 0.00 0.00 0.00 1.82
2433 2680 2.632377 CTACATGAAAGCACCGTCCAT 58.368 47.619 0.00 0.00 0.00 3.41
2451 2705 1.379977 CAGCAGACCCGTCCTCCTA 60.380 63.158 0.00 0.00 0.00 2.94
2501 2755 5.124457 CCTGCATGCTGTAAAGATTACACTT 59.876 40.000 20.33 0.00 0.00 3.16
2514 2768 4.155063 TGAATATACACCTGCATGCTGT 57.845 40.909 20.33 17.07 0.00 4.40
2521 2775 7.123830 GTCGTTGTAATTGAATATACACCTGC 58.876 38.462 0.00 0.00 32.07 4.85
2539 2793 3.454941 GCTTTCAATGCGTCGTTGT 57.545 47.368 10.27 0.00 32.76 3.32
2553 2807 1.308069 ATCGCATGCAGTTCCGCTTT 61.308 50.000 19.57 0.00 0.00 3.51
2575 2829 3.104766 CTAGTGCCATGCCTTGCG 58.895 61.111 0.00 0.00 0.00 4.85
2591 2845 3.271014 CAAGAATGCTGCACGGCT 58.729 55.556 3.57 0.00 0.00 5.52
2605 2859 3.651206 TGTACAACAATTGGCATGCAAG 58.349 40.909 21.36 6.29 34.12 4.01
2608 2862 3.244976 GACTGTACAACAATTGGCATGC 58.755 45.455 9.90 9.90 34.12 4.06
2624 2878 0.529833 CCGATGCTGAGTCTGACTGT 59.470 55.000 16.28 0.00 0.00 3.55
2659 2913 4.045469 GGGTTAAGCTCTCCCCGA 57.955 61.111 4.41 0.00 35.52 5.14
2676 2930 2.002586 CAAGTGTCCATAAGCTGACCG 58.997 52.381 0.00 0.00 0.00 4.79
2847 3101 2.978156 TCAAGAGGCACCAAATCCTT 57.022 45.000 0.00 0.00 31.71 3.36
2938 3193 9.796120 TTGATCAAACTTTACGAATTTGACTTT 57.204 25.926 5.45 0.00 43.19 2.66
2939 3194 9.450807 CTTGATCAAACTTTACGAATTTGACTT 57.549 29.630 9.88 0.00 43.19 3.01
2940 3195 8.621286 ACTTGATCAAACTTTACGAATTTGACT 58.379 29.630 9.88 0.00 43.19 3.41
2941 3196 8.782533 ACTTGATCAAACTTTACGAATTTGAC 57.217 30.769 9.88 0.00 43.19 3.18
2942 3197 9.796120 AAACTTGATCAAACTTTACGAATTTGA 57.204 25.926 9.88 1.49 44.18 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.