Multiple sequence alignment - TraesCS4B01G044000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G044000 chr4B 100.000 5325 0 0 1 5325 31888529 31883205 0.000000e+00 9834
1 TraesCS4B01G044000 chr4B 100.000 143 0 0 5623 5765 31882907 31882765 1.230000e-66 265
2 TraesCS4B01G044000 chr4A 91.800 3244 179 32 2121 5317 581468595 581471798 0.000000e+00 4436
3 TraesCS4B01G044000 chr4A 84.938 2171 164 89 23 2112 581466375 581468463 0.000000e+00 2047
4 TraesCS4B01G044000 chr4D 93.870 2088 88 18 3246 5325 19441652 19439597 0.000000e+00 3110
5 TraesCS4B01G044000 chr4D 88.136 2478 116 64 7 2379 19445049 19442645 0.000000e+00 2784
6 TraesCS4B01G044000 chr4D 91.855 884 59 5 2377 3250 19442564 19441684 0.000000e+00 1221
7 TraesCS4B01G044000 chr4D 87.407 135 7 8 5623 5751 19439477 19439347 4.650000e-31 147
8 TraesCS4B01G044000 chr5D 88.922 993 72 14 1924 2888 214066221 214067203 0.000000e+00 1190
9 TraesCS4B01G044000 chr5D 90.274 329 29 2 2370 2696 80898400 80898073 1.480000e-115 427
10 TraesCS4B01G044000 chr5D 88.761 347 33 3 2545 2888 367507552 367507895 2.480000e-113 420
11 TraesCS4B01G044000 chr5D 88.822 331 14 12 1978 2285 367507335 367507665 9.060000e-103 385
12 TraesCS4B01G044000 chr6D 87.540 939 67 25 1978 2888 419596129 419595213 0.000000e+00 1040
13 TraesCS4B01G044000 chr6D 87.433 939 68 25 1978 2888 427609672 427608756 0.000000e+00 1035
14 TraesCS4B01G044000 chr6D 87.327 939 69 25 1978 2888 427934033 427933117 0.000000e+00 1029
15 TraesCS4B01G044000 chr2D 86.475 939 77 25 1978 2888 499025157 499024241 0.000000e+00 985
16 TraesCS4B01G044000 chr2D 88.539 349 32 4 2545 2888 181604702 181605047 3.210000e-112 416
17 TraesCS4B01G044000 chr5A 86.809 470 52 6 2424 2888 452800727 452800263 3.080000e-142 516
18 TraesCS4B01G044000 chr5A 90.578 329 28 2 2370 2696 308142752 308143079 3.190000e-117 433
19 TraesCS4B01G044000 chr6A 91.185 329 26 2 2370 2696 121648525 121648198 1.470000e-120 444
20 TraesCS4B01G044000 chr3A 90.578 329 28 2 2370 2696 399610569 399610242 3.190000e-117 433
21 TraesCS4B01G044000 chrUn 88.761 347 33 3 2545 2888 402939992 402940335 2.480000e-113 420
22 TraesCS4B01G044000 chrUn 88.822 331 14 12 1978 2285 402939775 402940105 9.060000e-103 385
23 TraesCS4B01G044000 chr7D 88.761 347 33 3 2545 2888 589202907 589202564 2.480000e-113 420
24 TraesCS4B01G044000 chr1D 88.473 347 34 3 2545 2888 435734808 435734465 1.160000e-111 414


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G044000 chr4B 31882765 31888529 5764 True 5049.5 9834 100.0000 1 5765 2 chr4B.!!$R1 5764
1 TraesCS4B01G044000 chr4A 581466375 581471798 5423 False 3241.5 4436 88.3690 23 5317 2 chr4A.!!$F1 5294
2 TraesCS4B01G044000 chr4D 19439347 19445049 5702 True 1815.5 3110 90.3170 7 5751 4 chr4D.!!$R1 5744
3 TraesCS4B01G044000 chr5D 214066221 214067203 982 False 1190.0 1190 88.9220 1924 2888 1 chr5D.!!$F1 964
4 TraesCS4B01G044000 chr5D 367507335 367507895 560 False 402.5 420 88.7915 1978 2888 2 chr5D.!!$F2 910
5 TraesCS4B01G044000 chr6D 419595213 419596129 916 True 1040.0 1040 87.5400 1978 2888 1 chr6D.!!$R1 910
6 TraesCS4B01G044000 chr6D 427608756 427609672 916 True 1035.0 1035 87.4330 1978 2888 1 chr6D.!!$R2 910
7 TraesCS4B01G044000 chr6D 427933117 427934033 916 True 1029.0 1029 87.3270 1978 2888 1 chr6D.!!$R3 910
8 TraesCS4B01G044000 chr2D 499024241 499025157 916 True 985.0 985 86.4750 1978 2888 1 chr2D.!!$R1 910
9 TraesCS4B01G044000 chrUn 402939775 402940335 560 False 402.5 420 88.7915 1978 2888 2 chrUn.!!$F1 910

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
993 1128 0.036765 TTGCGCTGTTTCCCGATACT 60.037 50.0 9.73 0.0 0.00 2.12 F
1049 1185 1.091537 TTGATTCCACGGCGAATTCC 58.908 50.0 16.62 0.0 32.56 3.01 F
2641 3780 0.176680 CGGCAGTGTCCTTGATAGCT 59.823 55.0 0.00 0.0 0.00 3.32 F
2983 4136 0.251297 CTGTGCCAATGGAAGGTGGA 60.251 55.0 2.05 0.0 37.03 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1920 2064 0.036388 TTCTTCTCCGGCACCACATC 60.036 55.0 0.0 0.0 0.00 3.06 R
2953 4106 0.109153 TTGGCACAGCATCACACTCT 59.891 50.0 0.0 0.0 42.39 3.24 R
4465 5663 0.586802 GTTCCAACACGACTTCTGCC 59.413 55.0 0.0 0.0 0.00 4.85 R
4956 6159 0.250989 TAGGCGGGAAAGTTTGGTGG 60.251 55.0 0.0 0.0 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.135660 GCTCTTCAGCCGGCTTAAAAC 60.136 52.381 30.60 13.40 40.14 2.43
22 23 2.427506 CTCTTCAGCCGGCTTAAAACT 58.572 47.619 30.60 0.00 0.00 2.66
23 24 3.596214 CTCTTCAGCCGGCTTAAAACTA 58.404 45.455 30.60 9.96 0.00 2.24
24 25 3.596214 TCTTCAGCCGGCTTAAAACTAG 58.404 45.455 30.60 13.31 0.00 2.57
70 71 0.253327 AGACGCCAAGAAGAATCCCC 59.747 55.000 0.00 0.00 0.00 4.81
134 147 1.095600 TCTCTGATCCGGTCGTCTTG 58.904 55.000 0.00 0.00 0.00 3.02
143 156 1.291272 GGTCGTCTTGGGCTTACGT 59.709 57.895 0.00 0.00 37.83 3.57
145 158 1.373748 TCGTCTTGGGCTTACGTGC 60.374 57.895 0.00 0.00 37.83 5.34
146 159 2.726691 CGTCTTGGGCTTACGTGCG 61.727 63.158 0.00 0.00 32.16 5.34
147 160 2.740826 TCTTGGGCTTACGTGCGC 60.741 61.111 0.00 0.00 44.63 6.09
148 161 2.742372 CTTGGGCTTACGTGCGCT 60.742 61.111 9.73 0.00 44.66 5.92
150 163 1.421410 CTTGGGCTTACGTGCGCTAG 61.421 60.000 9.73 12.53 44.66 3.42
151 164 3.262686 GGGCTTACGTGCGCTAGC 61.263 66.667 9.73 4.06 41.74 3.42
172 211 2.032681 GGTCCAACCTGCTTCGCT 59.967 61.111 0.00 0.00 34.73 4.93
173 212 2.035442 GGTCCAACCTGCTTCGCTC 61.035 63.158 0.00 0.00 34.73 5.03
174 213 2.035442 GTCCAACCTGCTTCGCTCC 61.035 63.158 0.00 0.00 0.00 4.70
175 214 2.747855 CCAACCTGCTTCGCTCCC 60.748 66.667 0.00 0.00 0.00 4.30
176 215 3.121030 CAACCTGCTTCGCTCCCG 61.121 66.667 0.00 0.00 0.00 5.14
277 343 3.198582 GGGACGTCTCCGGAGAAG 58.801 66.667 36.28 36.28 39.48 2.85
283 349 1.813192 GTCTCCGGAGAAGAGCCAG 59.187 63.158 35.18 5.38 39.48 4.85
287 353 4.521062 CGGAGAAGAGCCAGCCGG 62.521 72.222 0.00 0.00 38.40 6.13
326 392 2.420687 CCAGAATCTACCACTGCTTCCC 60.421 54.545 0.00 0.00 0.00 3.97
492 576 1.141881 CACCTCCGCTCGTTGCTAT 59.858 57.895 2.29 0.00 40.11 2.97
493 577 1.141881 ACCTCCGCTCGTTGCTATG 59.858 57.895 2.29 0.00 40.11 2.23
495 579 1.227089 CTCCGCTCGTTGCTATGCT 60.227 57.895 2.29 0.00 40.11 3.79
517 601 6.071463 GCTGAATTACTGATTAATTACGGCG 58.929 40.000 4.80 4.80 39.99 6.46
550 635 0.532862 ATGGCGAGGATTTACCAGCG 60.533 55.000 0.00 0.00 42.48 5.18
577 667 3.127533 GCATCGCCACCACTGACC 61.128 66.667 0.00 0.00 0.00 4.02
578 668 2.436646 CATCGCCACCACTGACCC 60.437 66.667 0.00 0.00 0.00 4.46
579 669 3.717294 ATCGCCACCACTGACCCC 61.717 66.667 0.00 0.00 0.00 4.95
634 724 6.497785 TTTATTCGTCTCCCTCTCGATATC 57.502 41.667 0.00 0.00 33.72 1.63
684 778 1.425448 CTTTCCACCAAACTCCTCCCT 59.575 52.381 0.00 0.00 0.00 4.20
689 783 0.494095 ACCAAACTCCTCCCTCCTCT 59.506 55.000 0.00 0.00 0.00 3.69
692 786 2.545810 CAAACTCCTCCCTCCTCTTCT 58.454 52.381 0.00 0.00 0.00 2.85
698 792 2.444895 CCCTCCTCTTCTCCCCCG 60.445 72.222 0.00 0.00 0.00 5.73
699 793 2.690452 CCTCCTCTTCTCCCCCGA 59.310 66.667 0.00 0.00 0.00 5.14
701 795 1.000486 CTCCTCTTCTCCCCCGACA 60.000 63.158 0.00 0.00 0.00 4.35
703 797 2.359967 CCTCTTCTCCCCCGACACC 61.360 68.421 0.00 0.00 0.00 4.16
705 799 2.284699 CTTCTCCCCCGACACCCT 60.285 66.667 0.00 0.00 0.00 4.34
706 800 1.918800 CTTCTCCCCCGACACCCTT 60.919 63.158 0.00 0.00 0.00 3.95
708 802 3.771160 CTCCCCCGACACCCTTCG 61.771 72.222 0.00 0.00 38.80 3.79
718 823 4.012721 ACCCTTCGCCCTCCTCCT 62.013 66.667 0.00 0.00 0.00 3.69
719 824 3.157949 CCCTTCGCCCTCCTCCTC 61.158 72.222 0.00 0.00 0.00 3.71
731 836 2.360209 CCTCCTCCTCCTTCCTCTGAAT 60.360 54.545 0.00 0.00 0.00 2.57
735 840 3.631087 CCTCCTCCTTCCTCTGAATACCA 60.631 52.174 0.00 0.00 0.00 3.25
737 842 3.012959 TCCTCCTTCCTCTGAATACCAGT 59.987 47.826 0.00 0.00 43.38 4.00
788 900 0.545787 ACAGATTCCACCCCGGTGTA 60.546 55.000 12.77 1.16 44.02 2.90
789 901 0.837272 CAGATTCCACCCCGGTGTAT 59.163 55.000 12.77 5.88 44.02 2.29
911 1042 1.627297 AACCGGCTCCTCATTCCTCC 61.627 60.000 0.00 0.00 0.00 4.30
945 1076 0.818040 AGAGTGGTTCGGTTGGTTGC 60.818 55.000 0.00 0.00 0.00 4.17
946 1077 0.818040 GAGTGGTTCGGTTGGTTGCT 60.818 55.000 0.00 0.00 0.00 3.91
947 1078 0.818040 AGTGGTTCGGTTGGTTGCTC 60.818 55.000 0.00 0.00 0.00 4.26
948 1079 1.890041 TGGTTCGGTTGGTTGCTCG 60.890 57.895 0.00 0.00 0.00 5.03
993 1128 0.036765 TTGCGCTGTTTCCCGATACT 60.037 50.000 9.73 0.00 0.00 2.12
1000 1136 3.062234 GCTGTTTCCCGATACTTTTCTCG 59.938 47.826 0.00 0.00 34.73 4.04
1045 1181 1.885560 TTCTTTGATTCCACGGCGAA 58.114 45.000 16.62 0.00 0.00 4.70
1049 1185 1.091537 TTGATTCCACGGCGAATTCC 58.908 50.000 16.62 0.00 32.56 3.01
1079 1215 3.248171 GGCGTGTCTGTCGATCGC 61.248 66.667 11.09 6.41 41.23 4.58
1815 1959 3.253955 GCGTTGAGCGATTGGTGT 58.746 55.556 0.00 0.00 44.77 4.16
1817 1961 1.291877 GCGTTGAGCGATTGGTGTCT 61.292 55.000 0.00 0.00 44.77 3.41
1829 1973 4.637534 CGATTGGTGTCTCTTGAATCCATT 59.362 41.667 0.00 0.00 31.13 3.16
1904 2048 2.559440 GAGGGAGCAGTTGATCATGTC 58.441 52.381 0.00 0.00 30.87 3.06
1917 2061 3.381983 ATGTCGCCGTGGAGCAGA 61.382 61.111 0.00 0.00 0.00 4.26
1920 2064 4.717629 TCGCCGTGGAGCAGAACG 62.718 66.667 0.00 0.00 39.48 3.95
1936 2080 2.107041 AACGATGTGGTGCCGGAGAA 62.107 55.000 5.05 0.00 0.00 2.87
1950 2094 1.933853 CGGAGAAGAAGGTTAATGCCG 59.066 52.381 0.00 0.00 0.00 5.69
1969 2113 1.128692 CGACGAGGAGAAATTTGTGGC 59.871 52.381 0.00 0.00 0.00 5.01
1996 2140 4.960938 TCTGATGTTCAGCACTGTAAGTT 58.039 39.130 0.00 0.00 44.81 2.66
2166 2461 9.381033 CTGTGACTATTCTTGAGATGATCTTTT 57.619 33.333 0.00 0.00 0.00 2.27
2296 3352 6.560003 ATGGACCTCTTATACACATGTTCA 57.440 37.500 0.00 0.00 0.00 3.18
2400 3539 5.574188 ACCTATCTTTTCAATTGCTCCACT 58.426 37.500 0.00 0.00 0.00 4.00
2405 3544 0.592637 TTCAATTGCTCCACTGCACG 59.407 50.000 0.00 0.00 43.20 5.34
2415 3554 3.425758 GCTCCACTGCACGTTTATTTACC 60.426 47.826 0.00 0.00 0.00 2.85
2421 3560 6.201425 CCACTGCACGTTTATTTACCGTATAT 59.799 38.462 0.00 0.00 32.81 0.86
2520 3659 4.262617 GGAGATGGTCTTTAAGTGTTCCC 58.737 47.826 0.00 0.00 0.00 3.97
2541 3680 8.674607 GTTCCCACACATACTTCTTATTTTAGG 58.325 37.037 0.00 0.00 0.00 2.69
2557 3696 5.897377 TTTTAGGCTTTTAGCTGATCCAC 57.103 39.130 0.00 0.00 41.99 4.02
2641 3780 0.176680 CGGCAGTGTCCTTGATAGCT 59.823 55.000 0.00 0.00 0.00 3.32
2676 3815 9.793252 ACGTCTTAACTAAATAGAAGCGATTTA 57.207 29.630 0.00 0.00 0.00 1.40
2696 3835 8.331022 CGATTTATTGTCATCTACAGTCCTTTG 58.669 37.037 0.00 0.00 39.87 2.77
2705 3844 5.871396 TCTACAGTCCTTTGAGTTGTTCT 57.129 39.130 0.00 0.00 0.00 3.01
2746 3896 8.782327 GCTTATTTAACGTTGATAAGAAAACCG 58.218 33.333 30.28 15.73 36.10 4.44
2794 3944 5.310068 AGCTCCTCATCAGATGAATAATGGT 59.690 40.000 14.25 6.12 39.11 3.55
2819 3972 7.666063 TTGAAAGAGATGTCATCAGAGGATA 57.334 36.000 15.20 0.00 30.87 2.59
2840 3993 0.746659 GCAAGTTGAACAGGGCACTT 59.253 50.000 7.16 0.00 0.00 3.16
2848 4001 3.211045 TGAACAGGGCACTTTAGAACAC 58.789 45.455 0.00 0.00 0.00 3.32
2943 4096 1.024271 GTGCTGGTTCAACAAGCTGA 58.976 50.000 18.09 0.00 32.25 4.26
2944 4097 1.002033 GTGCTGGTTCAACAAGCTGAG 60.002 52.381 18.09 0.00 32.25 3.35
2951 4104 5.620206 TGGTTCAACAAGCTGAGATAAAGA 58.380 37.500 0.00 0.00 0.00 2.52
2952 4105 6.240894 TGGTTCAACAAGCTGAGATAAAGAT 58.759 36.000 0.00 0.00 0.00 2.40
2953 4106 7.394016 TGGTTCAACAAGCTGAGATAAAGATA 58.606 34.615 0.00 0.00 0.00 1.98
2962 4115 7.838079 AGCTGAGATAAAGATAGAGTGTGAT 57.162 36.000 0.00 0.00 0.00 3.06
2966 4119 7.432059 TGAGATAAAGATAGAGTGTGATGCTG 58.568 38.462 0.00 0.00 0.00 4.41
2983 4136 0.251297 CTGTGCCAATGGAAGGTGGA 60.251 55.000 2.05 0.00 37.03 4.02
2984 4137 0.409092 TGTGCCAATGGAAGGTGGAT 59.591 50.000 2.05 0.00 37.03 3.41
3000 4153 1.483827 TGGATCACATGACTCAGAGGC 59.516 52.381 0.00 0.00 0.00 4.70
3008 4161 1.328279 TGACTCAGAGGCTTCGAACA 58.672 50.000 4.45 0.00 0.00 3.18
3013 4166 3.007398 ACTCAGAGGCTTCGAACAAGAAT 59.993 43.478 1.53 0.00 0.00 2.40
3016 4169 3.619038 CAGAGGCTTCGAACAAGAATACC 59.381 47.826 0.00 0.00 0.00 2.73
3025 4178 4.401519 TCGAACAAGAATACCGAGGAGAAT 59.598 41.667 0.00 0.00 0.00 2.40
3045 4198 3.027419 AGGTTCAACAAGCTGAGCC 57.973 52.632 0.00 0.00 44.68 4.70
3047 4200 1.576421 GTTCAACAAGCTGAGCCGG 59.424 57.895 0.00 0.00 0.00 6.13
3064 4217 1.064758 CCGGGTCAGGAATTGGATTCA 60.065 52.381 0.00 0.00 41.03 2.57
3086 4239 4.594920 CAGTAATGATACATCCCAGGGAGT 59.405 45.833 15.44 14.20 34.05 3.85
3091 4244 4.566837 TGATACATCCCAGGGAGTATGTT 58.433 43.478 24.60 12.39 34.05 2.71
3183 4345 6.831353 TGGGAACAAGTTACTGAGATTTCAAA 59.169 34.615 0.00 0.00 37.44 2.69
3214 4376 4.933505 TGAAAATCATGTTGAACAGCCA 57.066 36.364 3.74 0.00 0.00 4.75
3264 4462 3.319755 CAGCAGGCAAAGGTAAAATGTG 58.680 45.455 0.00 0.00 0.00 3.21
3315 4513 3.921119 TTCTACCTGTTTGCTGCATTG 57.079 42.857 1.84 0.00 0.00 2.82
3397 4595 7.830697 ACAGATGATATTGAAGTTGATCCAACA 59.169 33.333 11.73 0.00 45.66 3.33
3436 4634 2.655090 TGCACCAACTTTCTGATGGA 57.345 45.000 2.18 0.00 40.62 3.41
3475 4673 2.328819 AATCATCTCCTGACTGCAGC 57.671 50.000 15.27 7.45 40.91 5.25
3493 4691 3.247173 GCAGCGATGTTGAAGATAAGAGG 59.753 47.826 1.22 0.00 0.00 3.69
3504 4702 8.602424 TGTTGAAGATAAGAGGGTTTCTGATAA 58.398 33.333 0.00 0.00 35.91 1.75
3604 4802 7.611467 TCTGTTGATTCAAGTGTGGCTAATATT 59.389 33.333 0.00 0.00 0.00 1.28
3871 5069 2.214347 CTGCAGAGGCTGAATGATCTG 58.786 52.381 8.42 0.00 41.06 2.90
3993 5191 3.134127 GCACAAGGCCGATGACCC 61.134 66.667 17.19 2.79 36.11 4.46
4156 5354 5.518847 TGCTAGTCATATTGTTACGCTTGAC 59.481 40.000 0.00 0.00 34.99 3.18
4303 5501 4.156008 ACAGAAGATAACCATTCAAACGGC 59.844 41.667 0.00 0.00 0.00 5.68
4357 5555 7.044181 TCAGCTTCAAACTTCATGATAGTAGG 58.956 38.462 0.00 0.40 0.00 3.18
4406 5604 3.806380 CTCCTCCCTCTGTTTGATGATG 58.194 50.000 0.00 0.00 0.00 3.07
4522 5720 0.890542 AGCTTGCGATTGCCAGTGAA 60.891 50.000 7.80 0.00 41.78 3.18
4697 5895 2.408050 CACGGAACAACTCTGGAGAAG 58.592 52.381 4.49 0.00 34.34 2.85
4793 5993 6.638096 TGAATATTGTATTGCACATGGAGG 57.362 37.500 0.00 0.00 36.90 4.30
4832 6032 7.741785 TGTTTCTTTGTTTAGACCATAGGAGA 58.258 34.615 0.00 0.00 0.00 3.71
4847 6047 7.275920 ACCATAGGAGAATTAGTTTAGTGCAG 58.724 38.462 0.00 0.00 0.00 4.41
5088 6294 4.101585 TCAAGATGAAGACACCAACACTCT 59.898 41.667 0.00 0.00 0.00 3.24
5096 6302 3.947834 AGACACCAACACTCTGAAAAAGG 59.052 43.478 0.00 0.00 0.00 3.11
5106 6312 4.500477 CACTCTGAAAAAGGAAAGTTTGCG 59.500 41.667 1.08 0.00 0.00 4.85
5127 6333 1.067283 CACCACCAACAGCAACAACAA 60.067 47.619 0.00 0.00 0.00 2.83
5129 6335 1.067283 CCACCAACAGCAACAACAACA 60.067 47.619 0.00 0.00 0.00 3.33
5130 6336 2.261345 CACCAACAGCAACAACAACAG 58.739 47.619 0.00 0.00 0.00 3.16
5131 6337 1.280066 CCAACAGCAACAACAACAGC 58.720 50.000 0.00 0.00 0.00 4.40
5132 6338 0.915904 CAACAGCAACAACAACAGCG 59.084 50.000 0.00 0.00 0.00 5.18
5134 6340 0.378257 ACAGCAACAACAACAGCGAG 59.622 50.000 0.00 0.00 0.00 5.03
5135 6341 0.378257 CAGCAACAACAACAGCGAGT 59.622 50.000 0.00 0.00 0.00 4.18
5138 6344 1.202132 GCAACAACAACAGCGAGTGAA 60.202 47.619 0.00 0.00 0.00 3.18
5139 6345 2.708514 CAACAACAACAGCGAGTGAAG 58.291 47.619 0.00 0.00 0.00 3.02
5144 6350 1.957177 ACAACAGCGAGTGAAGAGAGA 59.043 47.619 0.00 0.00 0.00 3.10
5166 6372 0.179134 AGTTTGCCGACTAGCTAGCG 60.179 55.000 20.91 21.93 0.00 4.26
5185 6392 2.700329 GCATAGTCAGGCCAGAAGC 58.300 57.895 5.01 1.15 42.60 3.86
5208 6415 0.463474 GAAGCTGGGCTCTGTCATCC 60.463 60.000 0.00 0.00 38.25 3.51
5280 6489 3.785189 AATTCGGACGGCGGATCGG 62.785 63.158 13.24 5.23 0.00 4.18
5283 6492 4.702081 CGGACGGCGGATCGGATC 62.702 72.222 13.24 9.54 0.00 3.36
5288 6497 3.114616 GGCGGATCGGATCATGCG 61.115 66.667 18.99 13.97 40.33 4.73
5297 6506 2.189499 GGATCATGCGGCAACCCTC 61.189 63.158 6.82 1.71 0.00 4.30
5639 6848 4.623814 TCATGGCTTTGCGAGAGG 57.376 55.556 0.00 0.00 0.00 3.69
5645 6858 1.153469 GCTTTGCGAGAGGGAGAGG 60.153 63.158 0.00 0.00 0.00 3.69
5693 6906 4.950744 CTGAAAAACAGGCCAGCG 57.049 55.556 5.01 0.00 42.39 5.18
5719 6932 4.901849 AGCTCTGATTGCCAGGTAGTATAA 59.098 41.667 0.00 0.00 43.12 0.98
5732 6945 8.540388 GCCAGGTAGTATAAGGATGAATGAATA 58.460 37.037 0.00 0.00 0.00 1.75
5733 6946 9.877178 CCAGGTAGTATAAGGATGAATGAATAC 57.123 37.037 0.00 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.135660 GTTTTAAGCCGGCTGAAGAGC 60.136 52.381 33.60 17.96 45.40 4.09
3 4 2.561478 AGTTTTAAGCCGGCTGAAGA 57.439 45.000 33.60 22.49 0.00 2.87
4 5 3.335579 ACTAGTTTTAAGCCGGCTGAAG 58.664 45.455 33.60 19.02 0.00 3.02
5 6 3.412237 ACTAGTTTTAAGCCGGCTGAA 57.588 42.857 33.60 28.14 0.00 3.02
11 12 5.648572 ACTGCTACTACTAGTTTTAAGCCG 58.351 41.667 0.00 5.06 27.79 5.52
21 22 3.315749 GCACTGGGTACTGCTACTACTAG 59.684 52.174 0.00 0.00 0.00 2.57
22 23 3.285484 GCACTGGGTACTGCTACTACTA 58.715 50.000 0.00 0.00 0.00 1.82
23 24 2.100989 GCACTGGGTACTGCTACTACT 58.899 52.381 0.00 0.00 0.00 2.57
24 25 1.822990 TGCACTGGGTACTGCTACTAC 59.177 52.381 6.41 0.00 34.29 2.73
134 147 3.262686 GCTAGCGCACGTAAGCCC 61.263 66.667 11.47 0.00 45.62 5.19
145 158 2.125106 GTTGGACCTGGGCTAGCG 60.125 66.667 9.00 0.00 0.00 4.26
146 159 2.272471 GGTTGGACCTGGGCTAGC 59.728 66.667 6.04 6.04 34.73 3.42
176 215 1.212751 GGAGAAAATGGCACGGCAC 59.787 57.895 0.00 0.00 0.00 5.01
207 247 1.604278 GGCTTGCTCGTTTTCAGACTT 59.396 47.619 0.00 0.00 0.00 3.01
266 332 2.055042 GCTGGCTCTTCTCCGGAGA 61.055 63.158 30.49 30.49 35.27 3.71
287 353 3.249189 TCTGGTGACTGGTGCCCC 61.249 66.667 0.00 0.00 0.00 5.80
293 359 1.905215 AGATTCTGGTCTGGTGACTGG 59.095 52.381 0.00 0.00 42.54 4.00
294 360 3.118956 GGTAGATTCTGGTCTGGTGACTG 60.119 52.174 0.00 0.00 42.54 3.51
295 361 3.100671 GGTAGATTCTGGTCTGGTGACT 58.899 50.000 0.00 0.00 42.54 3.41
296 362 2.832129 TGGTAGATTCTGGTCTGGTGAC 59.168 50.000 0.00 0.00 42.22 3.67
297 363 2.832129 GTGGTAGATTCTGGTCTGGTGA 59.168 50.000 0.00 0.00 0.00 4.02
298 364 2.834549 AGTGGTAGATTCTGGTCTGGTG 59.165 50.000 0.00 0.00 0.00 4.17
299 365 2.834549 CAGTGGTAGATTCTGGTCTGGT 59.165 50.000 0.00 0.00 0.00 4.00
300 366 2.419297 GCAGTGGTAGATTCTGGTCTGG 60.419 54.545 0.00 0.00 0.00 3.86
301 367 2.499289 AGCAGTGGTAGATTCTGGTCTG 59.501 50.000 0.00 1.86 35.46 3.51
302 368 2.826488 AGCAGTGGTAGATTCTGGTCT 58.174 47.619 0.00 0.00 35.46 3.85
303 369 3.526534 GAAGCAGTGGTAGATTCTGGTC 58.473 50.000 0.00 0.00 38.65 4.02
304 370 2.237392 GGAAGCAGTGGTAGATTCTGGT 59.763 50.000 0.00 0.00 40.80 4.00
326 392 3.619233 AGATTTTCCGTTCCGTTTGTG 57.381 42.857 0.00 0.00 0.00 3.33
392 465 1.679305 GTCGCTCCCTCTCTGACCA 60.679 63.158 0.00 0.00 0.00 4.02
492 576 6.292649 CGCCGTAATTAATCAGTAATTCAGCA 60.293 38.462 0.00 0.00 40.80 4.41
493 577 6.071463 CGCCGTAATTAATCAGTAATTCAGC 58.929 40.000 0.00 0.00 40.80 4.26
495 579 7.956420 ATCGCCGTAATTAATCAGTAATTCA 57.044 32.000 0.00 0.00 40.80 2.57
599 689 4.262617 AGACGAATAAAAAGGAAGGAGGC 58.737 43.478 0.00 0.00 0.00 4.70
634 724 4.244802 GCGGAGGAGACGAGCGAG 62.245 72.222 0.00 0.00 0.00 5.03
684 778 1.305046 GTGTCGGGGGAGAAGAGGA 60.305 63.158 0.00 0.00 0.00 3.71
689 783 1.916777 GAAGGGTGTCGGGGGAGAA 60.917 63.158 0.00 0.00 0.00 2.87
698 792 3.003763 AGGAGGGCGAAGGGTGTC 61.004 66.667 0.00 0.00 0.00 3.67
699 793 3.003763 GAGGAGGGCGAAGGGTGT 61.004 66.667 0.00 0.00 0.00 4.16
701 795 3.986116 GAGGAGGAGGGCGAAGGGT 62.986 68.421 0.00 0.00 0.00 4.34
703 797 3.157949 GGAGGAGGAGGGCGAAGG 61.158 72.222 0.00 0.00 0.00 3.46
705 799 1.686110 GAAGGAGGAGGAGGGCGAA 60.686 63.158 0.00 0.00 0.00 4.70
706 800 2.042843 GAAGGAGGAGGAGGGCGA 60.043 66.667 0.00 0.00 0.00 5.54
708 802 1.764454 GAGGAAGGAGGAGGAGGGC 60.764 68.421 0.00 0.00 0.00 5.19
718 823 2.501723 GCACTGGTATTCAGAGGAAGGA 59.498 50.000 0.00 0.00 46.18 3.36
719 824 2.503356 AGCACTGGTATTCAGAGGAAGG 59.497 50.000 0.00 0.00 46.18 3.46
731 836 0.108186 CAGGATTGCGAGCACTGGTA 60.108 55.000 0.00 0.00 0.00 3.25
735 840 0.671781 GTGACAGGATTGCGAGCACT 60.672 55.000 0.00 0.00 0.00 4.40
737 842 1.375908 GGTGACAGGATTGCGAGCA 60.376 57.895 0.00 0.00 0.00 4.26
884 1012 0.035439 GAGGAGCCGGTTTCATGGAA 60.035 55.000 1.90 0.00 0.00 3.53
945 1076 2.126580 GTGGAACGACCGACCGAG 60.127 66.667 3.56 0.00 42.61 4.63
946 1077 3.673484 GGTGGAACGACCGACCGA 61.673 66.667 3.56 0.00 42.61 4.69
947 1078 3.909258 CTGGTGGAACGACCGACCG 62.909 68.421 0.00 0.00 40.33 4.79
948 1079 2.048503 CTGGTGGAACGACCGACC 60.049 66.667 0.00 4.03 42.61 4.79
978 1113 3.062234 CGAGAAAAGTATCGGGAAACAGC 59.938 47.826 0.00 0.00 34.82 4.40
993 1128 6.709018 AAAATTCCTCTTTGACCGAGAAAA 57.291 33.333 0.00 0.00 0.00 2.29
1000 1136 4.209080 CGCAACAAAAATTCCTCTTTGACC 59.791 41.667 7.21 0.00 36.30 4.02
1074 1210 1.643832 GGAATGCAACCGAGCGATC 59.356 57.895 0.00 0.00 37.31 3.69
1079 1215 1.815421 CGGAGGGAATGCAACCGAG 60.815 63.158 0.00 0.00 45.31 4.63
1113 1249 2.031163 CATCGAATCTCCCCGGCC 59.969 66.667 0.00 0.00 0.00 6.13
1233 1371 2.959071 GAGCAGCGCGATGAGGAC 60.959 66.667 30.90 10.39 0.00 3.85
1809 1953 4.761739 GTCAATGGATTCAAGAGACACCAA 59.238 41.667 0.00 0.00 34.44 3.67
1815 1959 5.494724 CAAGGAGTCAATGGATTCAAGAGA 58.505 41.667 0.00 0.00 31.80 3.10
1817 1961 4.592942 CCAAGGAGTCAATGGATTCAAGA 58.407 43.478 7.49 0.00 36.27 3.02
1829 1973 3.691342 CCGACGGCCAAGGAGTCA 61.691 66.667 2.24 0.00 34.80 3.41
1904 2048 3.989698 ATCGTTCTGCTCCACGGCG 62.990 63.158 4.80 4.80 37.02 6.46
1917 2061 2.047274 CTCCGGCACCACATCGTT 60.047 61.111 0.00 0.00 0.00 3.85
1920 2064 0.036388 TTCTTCTCCGGCACCACATC 60.036 55.000 0.00 0.00 0.00 3.06
1936 2080 1.134788 CCTCGTCGGCATTAACCTTCT 60.135 52.381 0.00 0.00 0.00 2.85
1950 2094 1.128692 CGCCACAAATTTCTCCTCGTC 59.871 52.381 0.00 0.00 0.00 4.20
2139 2434 6.514947 AGATCATCTCAAGAATAGTCACAGC 58.485 40.000 0.00 0.00 0.00 4.40
2140 2435 8.945481 AAAGATCATCTCAAGAATAGTCACAG 57.055 34.615 0.00 0.00 0.00 3.66
2166 2461 7.014518 CACATGGGATGGATCAGCTAAAATAAA 59.985 37.037 0.00 0.00 33.60 1.40
2248 3304 4.019411 TCATGCTATCAAGGACACTTCCAA 60.019 41.667 0.00 0.00 45.72 3.53
2400 3539 6.979817 ACAGATATACGGTAAATAAACGTGCA 59.020 34.615 0.00 0.00 41.40 4.57
2462 3601 9.539825 ACACAACAATTTGCAAGAAATAATACA 57.460 25.926 0.00 0.00 36.00 2.29
2526 3665 9.953565 TCAGCTAAAAGCCTAAAATAAGAAGTA 57.046 29.630 0.00 0.00 43.77 2.24
2541 3680 2.991250 TGGAGTGGATCAGCTAAAAGC 58.009 47.619 0.00 0.00 42.84 3.51
2550 3689 4.165760 AGCATATCTCATGGAGTGGATCA 58.834 43.478 0.00 0.00 0.00 2.92
2557 3696 8.039538 TGCTAAAATCTAGCATATCTCATGGAG 58.960 37.037 2.37 0.00 44.65 3.86
2622 3761 0.176680 AGCTATCAAGGACACTGCCG 59.823 55.000 0.00 0.00 0.00 5.69
2641 3780 9.932207 TCTATTTAGTTAAGACGTCCATTTTGA 57.068 29.630 13.01 0.00 0.00 2.69
2676 3815 6.365970 ACTCAAAGGACTGTAGATGACAAT 57.634 37.500 0.00 0.00 37.70 2.71
2696 3835 5.931441 AAACTATCAGCACAGAACAACTC 57.069 39.130 0.00 0.00 0.00 3.01
2705 3844 7.748683 CGTTAAATAAGCAAAACTATCAGCACA 59.251 33.333 0.00 0.00 0.00 4.57
2746 3896 9.670180 GCTGCGTGTAAAATTTAAAATCAATAC 57.330 29.630 0.00 0.00 0.00 1.89
2794 3944 6.364568 TCCTCTGATGACATCTCTTTCAAA 57.635 37.500 16.25 0.00 0.00 2.69
2819 3972 0.746659 GTGCCCTGTTCAACTTGCTT 59.253 50.000 0.00 0.00 0.00 3.91
2848 4001 3.861113 CAGATGGCATGGAAAACAATTCG 59.139 43.478 3.81 0.00 0.00 3.34
2943 4096 7.208777 CACAGCATCACACTCTATCTTTATCT 58.791 38.462 0.00 0.00 0.00 1.98
2944 4097 6.073873 GCACAGCATCACACTCTATCTTTATC 60.074 42.308 0.00 0.00 0.00 1.75
2951 4104 1.556451 TGGCACAGCATCACACTCTAT 59.444 47.619 0.00 0.00 0.00 1.98
2952 4105 0.975887 TGGCACAGCATCACACTCTA 59.024 50.000 0.00 0.00 0.00 2.43
2953 4106 0.109153 TTGGCACAGCATCACACTCT 59.891 50.000 0.00 0.00 42.39 3.24
2962 4115 1.153524 ACCTTCCATTGGCACAGCA 59.846 52.632 0.00 0.00 42.39 4.41
2966 4119 1.106285 GATCCACCTTCCATTGGCAC 58.894 55.000 0.00 0.00 32.37 5.01
2983 4136 2.159128 CGAAGCCTCTGAGTCATGTGAT 60.159 50.000 3.66 0.00 0.00 3.06
2984 4137 1.203287 CGAAGCCTCTGAGTCATGTGA 59.797 52.381 3.66 0.00 0.00 3.58
3000 4153 4.106029 TCCTCGGTATTCTTGTTCGAAG 57.894 45.455 0.00 0.00 0.00 3.79
3008 4161 4.290942 ACCTGATTCTCCTCGGTATTCTT 58.709 43.478 0.00 0.00 0.00 2.52
3013 4166 3.095912 TGAACCTGATTCTCCTCGGTA 57.904 47.619 0.00 0.00 38.25 4.02
3016 4169 3.319137 TGTTGAACCTGATTCTCCTCG 57.681 47.619 0.00 0.00 38.25 4.63
3025 4178 1.597742 GCTCAGCTTGTTGAACCTGA 58.402 50.000 0.00 3.41 33.65 3.86
3045 4198 2.292267 CTGAATCCAATTCCTGACCCG 58.708 52.381 0.00 0.00 38.50 5.28
3047 4200 6.122277 TCATTACTGAATCCAATTCCTGACC 58.878 40.000 0.00 0.00 38.50 4.02
3064 4217 4.832492 ACTCCCTGGGATGTATCATTACT 58.168 43.478 17.51 0.00 0.00 2.24
3086 4239 7.623630 TCCTCTTCACATTCTTCATCAACATA 58.376 34.615 0.00 0.00 0.00 2.29
3091 4244 6.364568 TTCTCCTCTTCACATTCTTCATCA 57.635 37.500 0.00 0.00 0.00 3.07
3183 4345 9.199982 GTTCAACATGATTTTCAATGTTCTCAT 57.800 29.630 0.00 0.00 35.33 2.90
3199 4361 1.527034 GCTCTGGCTGTTCAACATGA 58.473 50.000 0.00 0.00 35.22 3.07
3214 4376 9.700831 ATAAAAGTGGATAAATGGTTTAGCTCT 57.299 29.630 0.00 0.00 32.40 4.09
3220 4382 7.251321 TGCCATAAAAGTGGATAAATGGTTT 57.749 32.000 0.00 0.00 42.02 3.27
3283 4481 7.012943 GCAAACAGGTAGAAACAAACAAAAAC 58.987 34.615 0.00 0.00 0.00 2.43
3284 4482 6.931840 AGCAAACAGGTAGAAACAAACAAAAA 59.068 30.769 0.00 0.00 0.00 1.94
3285 4483 6.367422 CAGCAAACAGGTAGAAACAAACAAAA 59.633 34.615 0.00 0.00 0.00 2.44
3286 4484 5.866633 CAGCAAACAGGTAGAAACAAACAAA 59.133 36.000 0.00 0.00 0.00 2.83
3287 4485 5.406649 CAGCAAACAGGTAGAAACAAACAA 58.593 37.500 0.00 0.00 0.00 2.83
3315 4513 8.129211 GCCTATCATATTAAACAAGTCAACCAC 58.871 37.037 0.00 0.00 0.00 4.16
3397 4595 3.118445 GCAAGCTTGGTAGAAGATCCTCT 60.118 47.826 27.10 0.00 0.00 3.69
3464 4662 0.671472 TCAACATCGCTGCAGTCAGG 60.671 55.000 16.64 6.37 40.65 3.86
3475 4673 6.036517 CAGAAACCCTCTTATCTTCAACATCG 59.963 42.308 0.00 0.00 29.07 3.84
3504 4702 9.911788 AACTGATATCTTCAATATGAGTTGGTT 57.088 29.630 3.98 0.00 37.17 3.67
3604 4802 7.556275 AGTTCAACACTTTCCAGATCAGTAAAA 59.444 33.333 0.00 0.00 27.32 1.52
3871 5069 5.163457 CCTCTCCTTATCTCTCTTCACAACC 60.163 48.000 0.00 0.00 0.00 3.77
3993 5191 2.835580 AGCTGAGGATGATCCATTCG 57.164 50.000 14.90 0.16 39.61 3.34
4243 5441 6.074088 CCATCTTCAAGTTATCGGATTCTTCG 60.074 42.308 0.00 0.00 0.00 3.79
4303 5501 2.426522 TCAGAGAAACCATTTGAGGCG 58.573 47.619 0.00 0.00 0.00 5.52
4357 5555 1.401905 CCTCCATTGCTTACGCCTTTC 59.598 52.381 0.00 0.00 34.43 2.62
4406 5604 3.571401 CCATTCCCATTTCTCATGGTAGC 59.429 47.826 0.00 0.00 37.48 3.58
4465 5663 0.586802 GTTCCAACACGACTTCTGCC 59.413 55.000 0.00 0.00 0.00 4.85
4522 5720 2.477825 CGCTCATGGACTTGATCGATT 58.522 47.619 0.00 0.00 37.41 3.34
4679 5877 2.297597 AGACTTCTCCAGAGTTGTTCCG 59.702 50.000 0.00 0.00 0.00 4.30
4747 5945 3.301642 GCAAATCATAGACAAAAGCGCAC 59.698 43.478 11.47 0.00 0.00 5.34
4748 5946 3.191162 AGCAAATCATAGACAAAAGCGCA 59.809 39.130 11.47 0.00 0.00 6.09
4749 5947 3.545078 CAGCAAATCATAGACAAAAGCGC 59.455 43.478 0.00 0.00 0.00 5.92
4750 5948 4.973396 TCAGCAAATCATAGACAAAAGCG 58.027 39.130 0.00 0.00 0.00 4.68
4751 5949 9.525409 AATATTCAGCAAATCATAGACAAAAGC 57.475 29.630 0.00 0.00 0.00 3.51
4759 5959 9.902196 TGCAATACAATATTCAGCAAATCATAG 57.098 29.630 0.00 0.00 0.00 2.23
4793 5993 8.816640 AACAAAGAAACAATGATTGTACCATC 57.183 30.769 11.70 7.98 44.59 3.51
4828 6028 6.502136 AAAGCTGCACTAAACTAATTCTCC 57.498 37.500 1.02 0.00 0.00 3.71
4847 6047 6.783892 TGGAATTAATGAACTTGCAAAAGC 57.216 33.333 0.00 0.00 0.00 3.51
4915 6115 5.316167 ACAAAGAGAATGTGGAGTGCATAA 58.684 37.500 0.00 0.00 0.00 1.90
4956 6159 0.250989 TAGGCGGGAAAGTTTGGTGG 60.251 55.000 0.00 0.00 0.00 4.61
5056 6262 3.624410 TGTCTTCATCTTGAATGATGCGG 59.376 43.478 0.00 0.00 42.44 5.69
5061 6267 5.239306 GTGTTGGTGTCTTCATCTTGAATGA 59.761 40.000 0.00 0.00 35.59 2.57
5062 6268 5.240183 AGTGTTGGTGTCTTCATCTTGAATG 59.760 40.000 0.00 0.00 35.59 2.67
5063 6269 5.380043 AGTGTTGGTGTCTTCATCTTGAAT 58.620 37.500 0.00 0.00 35.59 2.57
5064 6270 4.780815 AGTGTTGGTGTCTTCATCTTGAA 58.219 39.130 0.00 0.00 34.79 2.69
5088 6294 2.926838 GTGCGCAAACTTTCCTTTTTCA 59.073 40.909 14.00 0.00 0.00 2.69
5096 6302 0.179124 TTGGTGGTGCGCAAACTTTC 60.179 50.000 14.00 0.00 0.00 2.62
5106 6312 0.805711 GTTGTTGCTGTTGGTGGTGC 60.806 55.000 0.00 0.00 0.00 5.01
5127 6333 1.173043 CCTCTCTCTTCACTCGCTGT 58.827 55.000 0.00 0.00 0.00 4.40
5129 6335 1.004277 ACTCCTCTCTCTTCACTCGCT 59.996 52.381 0.00 0.00 0.00 4.93
5130 6336 1.459450 ACTCCTCTCTCTTCACTCGC 58.541 55.000 0.00 0.00 0.00 5.03
5131 6337 3.832276 CAAACTCCTCTCTCTTCACTCG 58.168 50.000 0.00 0.00 0.00 4.18
5132 6338 3.584834 GCAAACTCCTCTCTCTTCACTC 58.415 50.000 0.00 0.00 0.00 3.51
5134 6340 2.694213 GGCAAACTCCTCTCTCTTCAC 58.306 52.381 0.00 0.00 0.00 3.18
5135 6341 1.273606 CGGCAAACTCCTCTCTCTTCA 59.726 52.381 0.00 0.00 0.00 3.02
5138 6344 0.892063 GTCGGCAAACTCCTCTCTCT 59.108 55.000 0.00 0.00 0.00 3.10
5139 6345 0.892063 AGTCGGCAAACTCCTCTCTC 59.108 55.000 0.00 0.00 0.00 3.20
5144 6350 1.751924 CTAGCTAGTCGGCAAACTCCT 59.248 52.381 12.92 0.00 34.17 3.69
5185 6392 2.271497 CAGAGCCCAGCTTCCCAG 59.729 66.667 0.00 0.00 39.88 4.45
5188 6395 0.463474 GATGACAGAGCCCAGCTTCC 60.463 60.000 0.00 0.00 39.88 3.46
5208 6415 2.042435 AGCTCCTTCTCCTCCCGG 60.042 66.667 0.00 0.00 0.00 5.73
5280 6489 2.189499 GGAGGGTTGCCGCATGATC 61.189 63.158 0.00 0.00 0.00 2.92
5281 6490 2.124151 GGAGGGTTGCCGCATGAT 60.124 61.111 0.00 0.00 0.00 2.45
5282 6491 4.424711 GGGAGGGTTGCCGCATGA 62.425 66.667 0.00 0.00 0.00 3.07
5283 6492 3.944250 AAGGGAGGGTTGCCGCATG 62.944 63.158 0.00 0.00 40.30 4.06
5288 6497 0.323451 CCTTACAAGGGAGGGTTGCC 60.323 60.000 0.00 0.00 42.66 4.52
5638 6847 1.208165 TCCCAAAAGCTCCCTCTCCC 61.208 60.000 0.00 0.00 0.00 4.30
5639 6848 0.698818 TTCCCAAAAGCTCCCTCTCC 59.301 55.000 0.00 0.00 0.00 3.71
5645 6858 1.550524 GGAACCATTCCCAAAAGCTCC 59.449 52.381 0.00 0.00 44.30 4.70
5677 6890 2.727544 GCGCTGGCCTGTTTTTCA 59.272 55.556 11.69 0.00 0.00 2.69
5691 6904 3.885521 GGCAATCAGAGCTGGCGC 61.886 66.667 0.00 0.00 0.00 6.53
5693 6906 2.119655 CCTGGCAATCAGAGCTGGC 61.120 63.158 0.00 2.63 46.18 4.85
5703 6916 6.763715 TTCATCCTTATACTACCTGGCAAT 57.236 37.500 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.