Multiple sequence alignment - TraesCS4B01G042600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G042600 chr4B 100.000 5915 0 0 724 6638 29715286 29709372 0.000000e+00 10924.0
1 TraesCS4B01G042600 chr4B 95.007 1402 58 8 4372 5770 29665003 29666395 0.000000e+00 2191.0
2 TraesCS4B01G042600 chr4B 96.815 1099 33 2 3108 4205 29663912 29665009 0.000000e+00 1834.0
3 TraesCS4B01G042600 chr4B 96.357 1098 32 3 2026 3115 29662727 29663824 0.000000e+00 1799.0
4 TraesCS4B01G042600 chr4B 100.000 387 0 0 1 387 29716009 29715623 0.000000e+00 715.0
5 TraesCS4B01G042600 chr4B 92.381 315 18 3 6113 6426 29667329 29667638 1.700000e-120 444.0
6 TraesCS4B01G042600 chr4B 95.331 257 12 0 2704 2960 29662131 29662387 6.200000e-110 409.0
7 TraesCS4B01G042600 chr4B 94.709 189 6 1 6454 6638 29667636 29667824 2.340000e-74 291.0
8 TraesCS4B01G042600 chr4B 94.318 176 9 1 1848 2023 29662589 29662763 1.100000e-67 268.0
9 TraesCS4B01G042600 chr4B 96.203 158 6 0 4221 4378 621703566 621703409 6.600000e-65 259.0
10 TraesCS4B01G042600 chr4B 95.625 160 7 0 4221 4380 139540521 139540362 2.380000e-64 257.0
11 TraesCS4B01G042600 chr4B 96.032 126 5 0 1724 1849 29662382 29662507 8.730000e-49 206.0
12 TraesCS4B01G042600 chr4B 97.500 40 1 0 1987 2026 29713984 29713945 1.190000e-07 69.4
13 TraesCS4B01G042600 chr4B 97.500 40 1 0 2026 2065 29714023 29713984 1.190000e-07 69.4
14 TraesCS4B01G042600 chr4A 91.488 1539 88 26 4372 5891 583153596 583155110 0.000000e+00 2076.0
15 TraesCS4B01G042600 chr4A 92.302 1286 57 14 756 2026 583150117 583151375 0.000000e+00 1788.0
16 TraesCS4B01G042600 chr4A 94.134 1108 45 6 2026 3115 583151336 583152441 0.000000e+00 1668.0
17 TraesCS4B01G042600 chr4A 92.343 1097 55 5 3112 4205 583152532 583153602 0.000000e+00 1533.0
18 TraesCS4B01G042600 chr4A 87.226 501 28 13 6137 6636 583155423 583155888 7.570000e-149 538.0
19 TraesCS4B01G042600 chr4A 87.071 379 44 4 1 377 583149309 583149684 2.210000e-114 424.0
20 TraesCS4B01G042600 chr4A 81.655 278 38 12 91 362 712301927 712301657 1.120000e-52 219.0
21 TraesCS4B01G042600 chr4D 90.939 1545 75 19 4372 5890 17861328 17859823 0.000000e+00 2017.0
22 TraesCS4B01G042600 chr4D 93.394 1090 46 7 3119 4205 17862388 17861322 0.000000e+00 1591.0
23 TraesCS4B01G042600 chr4D 96.014 853 32 1 1174 2026 17864449 17863599 0.000000e+00 1386.0
24 TraesCS4B01G042600 chr4D 91.924 1003 39 12 2137 3115 17863552 17862568 0.000000e+00 1365.0
25 TraesCS4B01G042600 chr4D 86.991 761 43 16 5891 6636 17758464 17759183 0.000000e+00 806.0
26 TraesCS4B01G042600 chr4D 92.683 328 13 3 749 1075 17865244 17864927 4.690000e-126 462.0
27 TraesCS4B01G042600 chr4D 91.139 316 21 5 75 387 17865718 17865407 7.960000e-114 422.0
28 TraesCS4B01G042600 chr4D 84.264 394 41 11 1 387 6391897 6391518 1.360000e-96 364.0
29 TraesCS4B01G042600 chr3D 90.270 1110 75 11 2026 3110 16621696 16620595 0.000000e+00 1421.0
30 TraesCS4B01G042600 chr3D 90.090 1110 70 20 3108 4205 16620501 16619420 0.000000e+00 1404.0
31 TraesCS4B01G042600 chr3D 90.207 868 65 11 4450 5310 16619406 16618552 0.000000e+00 1114.0
32 TraesCS4B01G042600 chr3D 88.136 531 50 5 1503 2026 16622181 16621657 2.630000e-173 619.0
33 TraesCS4B01G042600 chr3D 83.511 564 63 18 5352 5891 16618547 16617990 3.570000e-137 499.0
34 TraesCS4B01G042600 chr3D 83.594 512 39 27 981 1461 16623946 16623449 7.900000e-119 438.0
35 TraesCS4B01G042600 chr3D 94.915 177 9 0 4203 4379 520836834 520836658 1.820000e-70 278.0
36 TraesCS4B01G042600 chr3D 97.674 43 1 0 4395 4437 105428598 105428556 2.570000e-09 75.0
37 TraesCS4B01G042600 chr3D 93.750 48 3 0 4391 4438 157099443 157099396 9.230000e-09 73.1
38 TraesCS4B01G042600 chr3A 90.180 1110 76 11 2026 3110 20000648 20001749 0.000000e+00 1415.0
39 TraesCS4B01G042600 chr3A 89.578 1113 77 18 3105 4205 20001840 20002925 0.000000e+00 1376.0
40 TraesCS4B01G042600 chr3A 90.092 868 64 11 4450 5310 20002939 20003791 0.000000e+00 1107.0
41 TraesCS4B01G042600 chr3A 87.947 531 51 6 1503 2026 20000163 20000687 1.220000e-171 614.0
42 TraesCS4B01G042600 chr3A 87.558 434 44 8 5352 5781 20003796 20004223 1.660000e-135 494.0
43 TraesCS4B01G042600 chr3A 84.538 498 31 28 981 1440 19998436 19998925 1.020000e-122 451.0
44 TraesCS4B01G042600 chr3A 84.483 174 12 5 4203 4362 522058192 522058364 2.480000e-34 158.0
45 TraesCS4B01G042600 chr3B 89.873 1106 72 8 2029 3110 24011257 24010168 0.000000e+00 1386.0
46 TraesCS4B01G042600 chr3B 89.578 1113 72 22 3108 4205 24010074 24008991 0.000000e+00 1373.0
47 TraesCS4B01G042600 chr3B 90.230 870 63 12 4450 5310 24008977 24008121 0.000000e+00 1116.0
48 TraesCS4B01G042600 chr3B 88.015 534 46 9 1503 2026 24011746 24011221 3.400000e-172 616.0
49 TraesCS4B01G042600 chr3B 83.363 565 62 20 5352 5891 24008116 24007559 1.660000e-135 494.0
50 TraesCS4B01G042600 chr3B 82.903 503 51 25 984 1461 24013601 24013109 2.860000e-113 420.0
51 TraesCS4B01G042600 chr3B 95.652 46 2 0 4392 4437 252558303 252558348 2.570000e-09 75.0
52 TraesCS4B01G042600 chr2D 95.902 610 21 1 1412 2017 408774178 408774787 0.000000e+00 985.0
53 TraesCS4B01G042600 chr2A 94.003 617 31 3 1412 2024 606699270 606698656 0.000000e+00 929.0
54 TraesCS4B01G042600 chr2A 93.785 177 10 1 4203 4378 694757560 694757384 1.420000e-66 265.0
55 TraesCS4B01G042600 chr2B 83.981 412 35 19 1 384 449108526 449108934 3.780000e-97 366.0
56 TraesCS4B01G042600 chr5B 86.709 316 34 6 77 387 81209514 81209202 1.770000e-90 344.0
57 TraesCS4B01G042600 chr5B 94.152 171 7 3 4221 4390 487329378 487329546 2.380000e-64 257.0
58 TraesCS4B01G042600 chr7D 86.076 316 36 6 77 387 629524623 629524311 3.840000e-87 333.0
59 TraesCS4B01G042600 chr7D 92.655 177 12 1 4201 4376 60275566 60275390 3.070000e-63 254.0
60 TraesCS4B01G042600 chr7D 80.734 327 47 13 68 384 520328161 520327841 2.390000e-59 241.0
61 TraesCS4B01G042600 chr7D 94.643 56 3 0 4681 4736 541498550 541498495 3.300000e-13 87.9
62 TraesCS4B01G042600 chr7D 95.652 46 2 0 4392 4437 387221871 387221916 2.570000e-09 75.0
63 TraesCS4B01G042600 chr1D 88.559 236 26 1 5425 5660 462296690 462296456 1.090000e-72 285.0
64 TraesCS4B01G042600 chr7B 93.182 176 12 0 4203 4378 112349662 112349837 6.600000e-65 259.0
65 TraesCS4B01G042600 chr7B 76.486 370 71 13 1 364 744571868 744572227 3.160000e-43 187.0
66 TraesCS4B01G042600 chr7A 92.135 178 14 0 4203 4380 637258 637081 1.110000e-62 252.0
67 TraesCS4B01G042600 chr5A 92.982 171 12 0 4209 4379 645384661 645384491 3.970000e-62 250.0
68 TraesCS4B01G042600 chr1B 86.047 215 22 2 5425 5639 637367223 637367017 2.410000e-54 224.0
69 TraesCS4B01G042600 chr6B 89.655 58 6 0 4381 4438 226869143 226869086 2.570000e-09 75.0
70 TraesCS4B01G042600 chr6B 95.652 46 2 0 4391 4436 408680817 408680862 2.570000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G042600 chr4B 29709372 29716009 6637 True 2944.450000 10924 98.750000 1 6638 4 chr4B.!!$R3 6637
1 TraesCS4B01G042600 chr4B 29662131 29667824 5693 False 930.250000 2191 95.118750 1724 6638 8 chr4B.!!$F1 4914
2 TraesCS4B01G042600 chr4A 583149309 583155888 6579 False 1337.833333 2076 90.760667 1 6636 6 chr4A.!!$F1 6635
3 TraesCS4B01G042600 chr4D 17859823 17865718 5895 True 1207.166667 2017 92.682167 75 5890 6 chr4D.!!$R2 5815
4 TraesCS4B01G042600 chr4D 17758464 17759183 719 False 806.000000 806 86.991000 5891 6636 1 chr4D.!!$F1 745
5 TraesCS4B01G042600 chr3D 16617990 16623946 5956 True 915.833333 1421 87.634667 981 5891 6 chr3D.!!$R4 4910
6 TraesCS4B01G042600 chr3A 19998436 20004223 5787 False 909.500000 1415 88.315500 981 5781 6 chr3A.!!$F2 4800
7 TraesCS4B01G042600 chr3B 24007559 24013601 6042 True 900.833333 1386 87.327000 984 5891 6 chr3B.!!$R1 4907
8 TraesCS4B01G042600 chr2D 408774178 408774787 609 False 985.000000 985 95.902000 1412 2017 1 chr2D.!!$F1 605
9 TraesCS4B01G042600 chr2A 606698656 606699270 614 True 929.000000 929 94.003000 1412 2024 1 chr2A.!!$R1 612

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
973 1218 0.710017 GCAAAGAGCGCAAAAATCGG 59.290 50.0 11.47 0.0 0.0 4.18 F
1380 2028 0.112995 TGGGCAGCAAGGTCAATTCT 59.887 50.0 0.00 0.0 0.0 2.40 F
2612 4742 0.608640 AAGGTTACTGTCTGCTCCCG 59.391 55.0 0.00 0.0 0.0 5.14 F
3739 6106 0.952497 CACTGCATGACCTTGACGCT 60.952 55.0 0.00 0.0 0.0 5.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2093 4223 0.833287 AGTAGACGCAGGGCATCAAT 59.167 50.000 0.00 0.00 0.00 2.57 R
2746 4878 0.961019 TTTCCACACTTGCCATGAGC 59.039 50.000 0.00 0.00 44.14 4.26 R
4241 6634 0.040425 CGGTGCTTCAGAAAAACCCG 60.040 55.000 7.91 3.09 0.00 5.28 R
5703 8118 1.065782 TCTATGCGGCTGCTTACCAAA 60.066 47.619 20.27 0.00 43.34 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
142 144 9.907576 TTTAACAAATTTTTAACACGCATTGAG 57.092 25.926 0.00 0.00 0.00 3.02
143 145 7.763172 AACAAATTTTTAACACGCATTGAGA 57.237 28.000 0.00 0.00 0.00 3.27
245 247 9.208022 ACACACGGTGATTATATATTCATTGAG 57.792 33.333 16.29 8.88 36.96 3.02
334 338 6.422223 CATTTCCTTAATGTACGATGAGCAC 58.578 40.000 0.00 0.00 39.05 4.40
336 340 4.682787 TCCTTAATGTACGATGAGCACTG 58.317 43.478 0.00 0.00 0.00 3.66
344 348 3.386768 ACGATGAGCACTGTTTGTACT 57.613 42.857 0.00 0.00 0.00 2.73
347 351 4.022242 ACGATGAGCACTGTTTGTACTACT 60.022 41.667 0.00 0.00 0.00 2.57
743 753 3.829886 CGCTGCTTTATCACCTCAAAA 57.170 42.857 0.00 0.00 0.00 2.44
744 754 4.159377 CGCTGCTTTATCACCTCAAAAA 57.841 40.909 0.00 0.00 0.00 1.94
772 1012 2.363018 CTCTCCCCTGTCTCGGCA 60.363 66.667 0.00 0.00 0.00 5.69
874 1119 3.882888 CCTCGCTCTCTTCTCTGTATTCT 59.117 47.826 0.00 0.00 0.00 2.40
899 1144 2.739996 CCGCCTTGCATCCTCCTCT 61.740 63.158 0.00 0.00 0.00 3.69
908 1153 1.857965 CATCCTCCTCTCCTCACACA 58.142 55.000 0.00 0.00 0.00 3.72
973 1218 0.710017 GCAAAGAGCGCAAAAATCGG 59.290 50.000 11.47 0.00 0.00 4.18
974 1219 0.710017 CAAAGAGCGCAAAAATCGGC 59.290 50.000 11.47 0.00 0.00 5.54
1137 1387 2.437716 TGCGGGCGGAGATTTTCC 60.438 61.111 0.00 0.00 43.04 3.13
1138 1388 3.209812 GCGGGCGGAGATTTTCCC 61.210 66.667 0.00 0.00 43.63 3.97
1148 1398 4.617808 GGAGATTTTCCCGAGTTTTAGC 57.382 45.455 0.00 0.00 40.37 3.09
1149 1399 4.262617 GGAGATTTTCCCGAGTTTTAGCT 58.737 43.478 0.00 0.00 40.37 3.32
1150 1400 4.333095 GGAGATTTTCCCGAGTTTTAGCTC 59.667 45.833 0.00 0.00 40.37 4.09
1151 1401 4.906618 AGATTTTCCCGAGTTTTAGCTCA 58.093 39.130 0.00 0.00 35.33 4.26
1152 1402 4.938226 AGATTTTCCCGAGTTTTAGCTCAG 59.062 41.667 0.00 0.00 35.33 3.35
1158 1425 2.611518 CGAGTTTTAGCTCAGGAGTGG 58.388 52.381 0.00 0.00 35.33 4.00
1380 2028 0.112995 TGGGCAGCAAGGTCAATTCT 59.887 50.000 0.00 0.00 0.00 2.40
1382 2030 1.620323 GGGCAGCAAGGTCAATTCTTT 59.380 47.619 0.00 0.00 0.00 2.52
1563 3603 7.330700 GTCCTTGATCACTTAGTCTCTTTTCAG 59.669 40.741 0.00 0.00 0.00 3.02
1598 3638 2.491621 CTCGTGAGCAGCATCCGA 59.508 61.111 0.00 0.00 0.00 4.55
1956 4086 5.412904 CCAAGACTCTGGAGTAAATTTGGTC 59.587 44.000 17.73 0.00 42.66 4.02
2002 4132 6.500684 TTTATCAGGCTGTCTTGTTCATTC 57.499 37.500 15.27 0.00 0.00 2.67
2005 4135 2.886523 CAGGCTGTCTTGTTCATTCCAA 59.113 45.455 6.28 0.00 0.00 3.53
2027 4157 9.545105 TCCAATCAATGTATATGAAATTTTGGC 57.455 29.630 0.00 0.00 35.03 4.52
2028 4158 9.550406 CCAATCAATGTATATGAAATTTTGGCT 57.450 29.630 0.00 0.00 30.70 4.75
2031 4161 9.754382 ATCAATGTATATGAAATTTTGGCTGTC 57.246 29.630 0.00 0.00 0.00 3.51
2032 4162 8.970020 TCAATGTATATGAAATTTTGGCTGTCT 58.030 29.630 0.00 0.00 0.00 3.41
2033 4163 9.590451 CAATGTATATGAAATTTTGGCTGTCTT 57.410 29.630 0.00 0.00 0.00 3.01
2041 4171 8.761575 TGAAATTTTGGCTGTCTTATTCATTC 57.238 30.769 0.00 0.00 0.00 2.67
2042 4172 7.818930 TGAAATTTTGGCTGTCTTATTCATTCC 59.181 33.333 0.00 0.00 0.00 3.01
2043 4173 6.855763 ATTTTGGCTGTCTTATTCATTCCA 57.144 33.333 0.00 0.00 0.00 3.53
2044 4174 6.662865 TTTTGGCTGTCTTATTCATTCCAA 57.337 33.333 0.00 0.00 0.00 3.53
2045 4175 6.855763 TTTGGCTGTCTTATTCATTCCAAT 57.144 33.333 0.00 0.00 32.14 3.16
2046 4176 6.455360 TTGGCTGTCTTATTCATTCCAATC 57.545 37.500 0.00 0.00 0.00 2.67
2047 4177 5.508567 TGGCTGTCTTATTCATTCCAATCA 58.491 37.500 0.00 0.00 0.00 2.57
2048 4178 5.951148 TGGCTGTCTTATTCATTCCAATCAA 59.049 36.000 0.00 0.00 0.00 2.57
2049 4179 6.608405 TGGCTGTCTTATTCATTCCAATCAAT 59.392 34.615 0.00 0.00 0.00 2.57
2050 4180 6.921857 GGCTGTCTTATTCATTCCAATCAATG 59.078 38.462 0.00 0.00 35.39 2.82
2051 4181 7.417116 GGCTGTCTTATTCATTCCAATCAATGT 60.417 37.037 0.00 0.00 35.56 2.71
2052 4182 8.623903 GCTGTCTTATTCATTCCAATCAATGTA 58.376 33.333 0.00 0.00 35.56 2.29
2093 4223 9.389755 TGCATTGAACTATATACTGCTTTACAA 57.610 29.630 0.00 0.00 0.00 2.41
2377 4507 9.577003 GTGTTTTACTTGATACTAACACTTTCG 57.423 33.333 0.00 0.00 41.09 3.46
2505 4635 3.298619 TGGTGGATATGGGAAAAGCATG 58.701 45.455 0.00 0.00 0.00 4.06
2612 4742 0.608640 AAGGTTACTGTCTGCTCCCG 59.391 55.000 0.00 0.00 0.00 5.14
2746 4878 8.700722 TTTATGCAATATTTAACCTGTGCAAG 57.299 30.769 0.00 0.00 44.39 4.01
2766 4910 1.068055 GCTCATGGCAAGTGTGGAAAG 60.068 52.381 0.00 0.00 41.35 2.62
2792 4940 8.060679 GTCACATGATCATATTTCTCTTGTTCG 58.939 37.037 8.15 0.00 0.00 3.95
2795 4943 8.950210 ACATGATCATATTTCTCTTGTTCGTTT 58.050 29.630 8.15 0.00 0.00 3.60
2831 4987 3.316588 TGTGGCATAACAAAACATCGTGT 59.683 39.130 0.00 0.00 0.00 4.49
2833 4989 4.381566 GTGGCATAACAAAACATCGTGTTC 59.618 41.667 0.00 0.00 40.14 3.18
2834 4990 4.277174 TGGCATAACAAAACATCGTGTTCT 59.723 37.500 4.28 0.00 40.14 3.01
3110 5280 8.353423 AGAAATAGTGCAGGTACAAATTTGAT 57.647 30.769 24.64 11.17 0.00 2.57
3192 5540 4.443063 CGCATGATGCATTTGTTAAGATGG 59.557 41.667 18.47 0.00 45.36 3.51
3203 5551 9.617975 GCATTTGTTAAGATGGAGCTTATTATC 57.382 33.333 0.00 0.00 31.00 1.75
3208 5556 9.944376 TGTTAAGATGGAGCTTATTATCATACC 57.056 33.333 0.00 0.00 31.00 2.73
3335 5690 9.807649 AACCTAATGATTAAGATTGCATCAAAC 57.192 29.630 0.00 0.00 30.79 2.93
3367 5722 5.105228 CCACATTATCAATTGTGCCTTCCTT 60.105 40.000 5.13 0.00 0.00 3.36
3440 5799 4.922206 TCATCTGCTCAAACCCAGTTAAT 58.078 39.130 0.00 0.00 0.00 1.40
3445 5804 7.775053 TCTGCTCAAACCCAGTTAATTATTT 57.225 32.000 0.00 0.00 0.00 1.40
3497 5856 4.617959 TCGTTGTTCTTGTTCCTGTCTAG 58.382 43.478 0.00 0.00 0.00 2.43
3602 5967 6.833933 GGTGGGTGATAATCTTTTCCAATAGT 59.166 38.462 0.00 0.00 0.00 2.12
3681 6046 9.734620 TTTCAAGTTCAATGTAAATCAACTGAG 57.265 29.630 0.00 0.00 0.00 3.35
3739 6106 0.952497 CACTGCATGACCTTGACGCT 60.952 55.000 0.00 0.00 0.00 5.07
4204 6597 6.514947 TGTTCTCGTAAACTAAGTGGCTTTA 58.485 36.000 4.74 0.00 0.00 1.85
4205 6598 6.643770 TGTTCTCGTAAACTAAGTGGCTTTAG 59.356 38.462 7.50 7.50 36.83 1.85
4206 6599 6.336842 TCTCGTAAACTAAGTGGCTTTAGT 57.663 37.500 8.53 8.53 43.77 2.24
4207 6600 6.385033 TCTCGTAAACTAAGTGGCTTTAGTC 58.615 40.000 12.97 3.81 41.70 2.59
4208 6601 5.473039 TCGTAAACTAAGTGGCTTTAGTCC 58.527 41.667 12.97 6.27 41.70 3.85
4209 6602 5.244626 TCGTAAACTAAGTGGCTTTAGTCCT 59.755 40.000 12.97 8.07 41.70 3.85
4210 6603 5.930569 CGTAAACTAAGTGGCTTTAGTCCTT 59.069 40.000 12.97 8.86 41.70 3.36
4211 6604 6.128634 CGTAAACTAAGTGGCTTTAGTCCTTG 60.129 42.308 12.97 4.19 41.70 3.61
4212 6605 4.976540 ACTAAGTGGCTTTAGTCCTTGT 57.023 40.909 8.53 0.00 39.10 3.16
4213 6606 6.429521 AACTAAGTGGCTTTAGTCCTTGTA 57.570 37.500 12.97 0.00 41.70 2.41
4214 6607 5.791666 ACTAAGTGGCTTTAGTCCTTGTAC 58.208 41.667 8.53 0.00 39.10 2.90
4215 6608 4.699925 AAGTGGCTTTAGTCCTTGTACA 57.300 40.909 0.00 0.00 0.00 2.90
4216 6609 4.699925 AGTGGCTTTAGTCCTTGTACAA 57.300 40.909 8.28 8.28 0.00 2.41
4217 6610 5.242795 AGTGGCTTTAGTCCTTGTACAAT 57.757 39.130 9.13 0.00 0.00 2.71
4218 6611 5.003804 AGTGGCTTTAGTCCTTGTACAATG 58.996 41.667 9.13 6.65 0.00 2.82
4219 6612 4.156008 GTGGCTTTAGTCCTTGTACAATGG 59.844 45.833 9.13 12.47 0.00 3.16
4220 6613 3.694566 GGCTTTAGTCCTTGTACAATGGG 59.305 47.826 9.13 8.15 0.00 4.00
4221 6614 4.566907 GGCTTTAGTCCTTGTACAATGGGA 60.567 45.833 9.13 10.53 0.00 4.37
4222 6615 4.636206 GCTTTAGTCCTTGTACAATGGGAG 59.364 45.833 15.05 6.35 0.00 4.30
4223 6616 4.837093 TTAGTCCTTGTACAATGGGAGG 57.163 45.455 15.05 10.00 0.00 4.30
4224 6617 2.632537 AGTCCTTGTACAATGGGAGGT 58.367 47.619 15.05 5.22 0.00 3.85
4225 6618 2.305927 AGTCCTTGTACAATGGGAGGTG 59.694 50.000 15.05 0.00 0.00 4.00
4226 6619 1.004277 TCCTTGTACAATGGGAGGTGC 59.996 52.381 9.13 0.00 0.00 5.01
4227 6620 1.004745 CCTTGTACAATGGGAGGTGCT 59.995 52.381 9.13 0.00 0.00 4.40
4228 6621 2.555227 CCTTGTACAATGGGAGGTGCTT 60.555 50.000 9.13 0.00 0.00 3.91
4229 6622 3.308117 CCTTGTACAATGGGAGGTGCTTA 60.308 47.826 9.13 0.00 0.00 3.09
4230 6623 3.627395 TGTACAATGGGAGGTGCTTAG 57.373 47.619 0.00 0.00 0.00 2.18
4231 6624 3.178046 TGTACAATGGGAGGTGCTTAGA 58.822 45.455 0.00 0.00 0.00 2.10
4232 6625 3.585289 TGTACAATGGGAGGTGCTTAGAA 59.415 43.478 0.00 0.00 0.00 2.10
4233 6626 3.806949 ACAATGGGAGGTGCTTAGAAA 57.193 42.857 0.00 0.00 0.00 2.52
4234 6627 4.112634 ACAATGGGAGGTGCTTAGAAAA 57.887 40.909 0.00 0.00 0.00 2.29
4235 6628 4.479158 ACAATGGGAGGTGCTTAGAAAAA 58.521 39.130 0.00 0.00 0.00 1.94
4236 6629 5.086621 ACAATGGGAGGTGCTTAGAAAAAT 58.913 37.500 0.00 0.00 0.00 1.82
4237 6630 6.252995 ACAATGGGAGGTGCTTAGAAAAATA 58.747 36.000 0.00 0.00 0.00 1.40
4238 6631 6.723977 ACAATGGGAGGTGCTTAGAAAAATAA 59.276 34.615 0.00 0.00 0.00 1.40
4239 6632 7.234577 ACAATGGGAGGTGCTTAGAAAAATAAA 59.765 33.333 0.00 0.00 0.00 1.40
4240 6633 6.584185 TGGGAGGTGCTTAGAAAAATAAAC 57.416 37.500 0.00 0.00 0.00 2.01
4241 6634 5.479027 TGGGAGGTGCTTAGAAAAATAAACC 59.521 40.000 0.00 0.00 0.00 3.27
4242 6635 5.392703 GGGAGGTGCTTAGAAAAATAAACCG 60.393 44.000 0.00 0.00 0.00 4.44
4243 6636 5.392703 GGAGGTGCTTAGAAAAATAAACCGG 60.393 44.000 0.00 0.00 0.00 5.28
4244 6637 4.461431 AGGTGCTTAGAAAAATAAACCGGG 59.539 41.667 6.32 0.00 0.00 5.73
4245 6638 4.219070 GGTGCTTAGAAAAATAAACCGGGT 59.781 41.667 6.32 0.00 0.00 5.28
4246 6639 5.279106 GGTGCTTAGAAAAATAAACCGGGTT 60.279 40.000 10.96 10.96 0.00 4.11
4247 6640 6.218019 GTGCTTAGAAAAATAAACCGGGTTT 58.782 36.000 26.79 26.79 39.24 3.27
4248 6641 6.702723 GTGCTTAGAAAAATAAACCGGGTTTT 59.297 34.615 28.50 11.74 37.01 2.43
4249 6642 7.225145 GTGCTTAGAAAAATAAACCGGGTTTTT 59.775 33.333 28.50 18.85 37.01 1.94
4250 6643 7.438757 TGCTTAGAAAAATAAACCGGGTTTTTC 59.561 33.333 28.50 23.47 45.36 2.29
4254 6647 7.773864 GAAAAATAAACCGGGTTTTTCTGAA 57.226 32.000 28.50 11.38 43.37 3.02
4255 6648 7.780008 AAAAATAAACCGGGTTTTTCTGAAG 57.220 32.000 28.50 0.00 37.01 3.02
4256 6649 2.882927 AAACCGGGTTTTTCTGAAGC 57.117 45.000 19.22 0.00 31.10 3.86
4257 6650 1.770294 AACCGGGTTTTTCTGAAGCA 58.230 45.000 6.59 0.00 0.00 3.91
4258 6651 1.029681 ACCGGGTTTTTCTGAAGCAC 58.970 50.000 6.32 0.00 0.00 4.40
4259 6652 0.313987 CCGGGTTTTTCTGAAGCACC 59.686 55.000 10.25 10.25 0.00 5.01
4260 6653 0.040425 CGGGTTTTTCTGAAGCACCG 60.040 55.000 11.74 10.55 0.00 4.94
4261 6654 0.313987 GGGTTTTTCTGAAGCACCGG 59.686 55.000 0.00 0.00 0.00 5.28
4262 6655 1.029681 GGTTTTTCTGAAGCACCGGT 58.970 50.000 0.00 0.00 0.00 5.28
4263 6656 1.269051 GGTTTTTCTGAAGCACCGGTG 60.269 52.381 30.66 30.66 0.00 4.94
4275 6668 2.684001 CACCGGTGCCTATTTCTACA 57.316 50.000 24.02 0.00 0.00 2.74
4276 6669 2.550978 CACCGGTGCCTATTTCTACAG 58.449 52.381 24.02 0.00 0.00 2.74
4277 6670 1.485066 ACCGGTGCCTATTTCTACAGG 59.515 52.381 6.12 0.00 35.04 4.00
4278 6671 1.760613 CCGGTGCCTATTTCTACAGGA 59.239 52.381 0.00 0.00 33.42 3.86
4279 6672 2.224066 CCGGTGCCTATTTCTACAGGAG 60.224 54.545 0.00 0.00 33.42 3.69
4280 6673 2.693591 CGGTGCCTATTTCTACAGGAGA 59.306 50.000 0.00 0.00 33.42 3.71
4281 6674 3.243569 CGGTGCCTATTTCTACAGGAGAG 60.244 52.174 0.00 0.00 34.93 3.20
4282 6675 3.961408 GGTGCCTATTTCTACAGGAGAGA 59.039 47.826 0.00 0.00 34.93 3.10
4283 6676 4.202172 GGTGCCTATTTCTACAGGAGAGAC 60.202 50.000 0.00 0.00 34.93 3.36
4284 6677 3.632604 TGCCTATTTCTACAGGAGAGACG 59.367 47.826 0.00 0.00 34.93 4.18
4285 6678 3.551250 GCCTATTTCTACAGGAGAGACGC 60.551 52.174 0.00 0.00 34.93 5.19
4286 6679 3.886505 CCTATTTCTACAGGAGAGACGCT 59.113 47.826 0.00 0.00 34.93 5.07
4287 6680 4.339814 CCTATTTCTACAGGAGAGACGCTT 59.660 45.833 0.00 0.00 34.93 4.68
4288 6681 5.531659 CCTATTTCTACAGGAGAGACGCTTA 59.468 44.000 0.00 0.00 34.93 3.09
4289 6682 4.966965 TTTCTACAGGAGAGACGCTTAG 57.033 45.455 0.00 0.00 34.93 2.18
4290 6683 3.630892 TCTACAGGAGAGACGCTTAGT 57.369 47.619 0.00 0.00 0.00 2.24
4291 6684 3.952931 TCTACAGGAGAGACGCTTAGTT 58.047 45.455 0.00 0.00 0.00 2.24
4292 6685 5.095145 TCTACAGGAGAGACGCTTAGTTA 57.905 43.478 0.00 0.00 0.00 2.24
4293 6686 5.494724 TCTACAGGAGAGACGCTTAGTTAA 58.505 41.667 0.00 0.00 0.00 2.01
4294 6687 4.705337 ACAGGAGAGACGCTTAGTTAAG 57.295 45.455 0.00 0.00 36.40 1.85
4295 6688 9.223557 TTCTACAGGAGAGACGCTTAGTTAAGC 62.224 44.444 12.72 12.72 44.08 3.09
4310 6703 8.906636 CTTAGTTAAGCGTCTATCTTGTACAA 57.093 34.615 8.28 8.28 0.00 2.41
4311 6704 9.350357 CTTAGTTAAGCGTCTATCTTGTACAAA 57.650 33.333 10.03 1.56 0.00 2.83
4312 6705 9.865321 TTAGTTAAGCGTCTATCTTGTACAAAT 57.135 29.630 10.03 8.74 0.00 2.32
4314 6707 9.865321 AGTTAAGCGTCTATCTTGTACAAATAA 57.135 29.630 10.03 0.00 0.00 1.40
4316 6709 6.830114 AGCGTCTATCTTGTACAAATAAGC 57.170 37.500 10.03 13.54 0.00 3.09
4317 6710 6.338146 AGCGTCTATCTTGTACAAATAAGCA 58.662 36.000 10.03 0.00 0.00 3.91
4318 6711 6.255887 AGCGTCTATCTTGTACAAATAAGCAC 59.744 38.462 10.03 2.08 0.00 4.40
4319 6712 6.509677 GCGTCTATCTTGTACAAATAAGCACC 60.510 42.308 10.03 0.00 0.00 5.01
4320 6713 6.291637 CGTCTATCTTGTACAAATAAGCACCG 60.292 42.308 10.03 2.38 0.00 4.94
4321 6714 6.018994 GTCTATCTTGTACAAATAAGCACCGG 60.019 42.308 10.03 0.00 0.00 5.28
4322 6715 4.010667 TCTTGTACAAATAAGCACCGGT 57.989 40.909 10.03 0.00 0.00 5.28
4323 6716 3.749088 TCTTGTACAAATAAGCACCGGTG 59.251 43.478 30.66 30.66 0.00 4.94
4335 6728 2.331809 CACCGGTGCTTAAGAAAAGC 57.668 50.000 24.02 2.81 43.29 3.51
4336 6729 1.068541 CACCGGTGCTTAAGAAAAGCC 60.069 52.381 24.02 0.00 42.36 4.35
4337 6730 1.202891 ACCGGTGCTTAAGAAAAGCCT 60.203 47.619 6.12 0.00 42.36 4.58
4338 6731 1.200020 CCGGTGCTTAAGAAAAGCCTG 59.800 52.381 6.67 4.28 42.36 4.85
4339 6732 1.200020 CGGTGCTTAAGAAAAGCCTGG 59.800 52.381 6.67 0.00 42.36 4.45
4340 6733 2.239400 GGTGCTTAAGAAAAGCCTGGT 58.761 47.619 6.67 0.00 42.36 4.00
4341 6734 2.628178 GGTGCTTAAGAAAAGCCTGGTT 59.372 45.455 6.67 0.00 42.36 3.67
4342 6735 3.069586 GGTGCTTAAGAAAAGCCTGGTTT 59.930 43.478 6.67 0.00 42.36 3.27
4343 6736 4.442893 GGTGCTTAAGAAAAGCCTGGTTTT 60.443 41.667 6.67 2.36 42.36 2.43
4344 6737 5.116180 GTGCTTAAGAAAAGCCTGGTTTTT 58.884 37.500 19.35 19.35 42.36 1.94
4363 6756 4.657814 TTTTTCTCTAAGCACCTCCCAT 57.342 40.909 0.00 0.00 0.00 4.00
4364 6757 4.657814 TTTTCTCTAAGCACCTCCCATT 57.342 40.909 0.00 0.00 0.00 3.16
4365 6758 3.634397 TTCTCTAAGCACCTCCCATTG 57.366 47.619 0.00 0.00 0.00 2.82
4366 6759 2.551270 TCTCTAAGCACCTCCCATTGT 58.449 47.619 0.00 0.00 0.00 2.71
4367 6760 3.719871 TCTCTAAGCACCTCCCATTGTA 58.280 45.455 0.00 0.00 0.00 2.41
4368 6761 3.451178 TCTCTAAGCACCTCCCATTGTAC 59.549 47.826 0.00 0.00 0.00 2.90
4369 6762 3.178046 TCTAAGCACCTCCCATTGTACA 58.822 45.455 0.00 0.00 0.00 2.90
4370 6763 2.969821 AAGCACCTCCCATTGTACAA 57.030 45.000 11.41 11.41 0.00 2.41
4371 6764 2.496899 AGCACCTCCCATTGTACAAG 57.503 50.000 14.65 6.30 0.00 3.16
4372 6765 1.004745 AGCACCTCCCATTGTACAAGG 59.995 52.381 14.65 13.92 0.00 3.61
4373 6766 1.463674 CACCTCCCATTGTACAAGGC 58.536 55.000 14.66 0.00 0.00 4.35
4374 6767 0.331616 ACCTCCCATTGTACAAGGCC 59.668 55.000 14.66 0.00 0.00 5.19
4375 6768 0.625849 CCTCCCATTGTACAAGGCCT 59.374 55.000 14.66 0.00 0.00 5.19
4376 6769 1.005924 CCTCCCATTGTACAAGGCCTT 59.994 52.381 13.78 13.78 0.00 4.35
4417 6810 3.418047 CCTCCGTCCCAAAATAAGTGTT 58.582 45.455 0.00 0.00 0.00 3.32
4686 7079 1.898863 ATACTGGATTCCCTGGCAGT 58.101 50.000 14.43 8.60 35.88 4.40
4782 7177 8.393395 ACATTGCTTTTATGTACTATTTTGCG 57.607 30.769 0.00 0.00 34.59 4.85
4783 7178 6.862944 TTGCTTTTATGTACTATTTTGCGC 57.137 33.333 0.00 0.00 0.00 6.09
4881 7284 6.837568 TCGACCTTCTAGATAGGTTGGTTATT 59.162 38.462 25.57 8.02 45.88 1.40
4887 7290 7.886629 TCTAGATAGGTTGGTTATTGTACGT 57.113 36.000 0.00 0.00 0.00 3.57
4987 7390 8.549548 TGTAGAAATGCATTTGATGTTTGTTTG 58.450 29.630 28.67 0.00 0.00 2.93
5066 7469 3.054802 AGGACAGTCTTGCATTTCTAGGG 60.055 47.826 0.00 0.00 0.00 3.53
5304 7715 8.629158 TGTGAATTTTAACATGCCTATATGTCC 58.371 33.333 0.00 0.00 40.24 4.02
5310 7721 4.077300 ACATGCCTATATGTCCAGTGTG 57.923 45.455 0.00 0.00 36.60 3.82
5311 7722 3.455910 ACATGCCTATATGTCCAGTGTGT 59.544 43.478 0.00 0.00 36.60 3.72
5314 7725 2.473816 CCTATATGTCCAGTGTGTGCG 58.526 52.381 0.00 0.00 0.00 5.34
5340 7751 3.507162 ATCACAGGGTTTGTCATCACA 57.493 42.857 0.00 0.00 38.16 3.58
5361 7772 4.279922 ACAAGGCCAGTTTATTGTTGGTAC 59.720 41.667 5.01 0.00 32.10 3.34
5481 7892 5.565509 TCTGCAAGGTATGTGTTGGATTTA 58.434 37.500 0.00 0.00 0.00 1.40
5517 7928 5.710646 TCTTCCTAGCCTGATCTTAGTCAT 58.289 41.667 0.00 0.00 0.00 3.06
5642 8053 6.869206 AGGAAGCTACATCACCTAAACTAA 57.131 37.500 0.00 0.00 0.00 2.24
5703 8118 2.393646 GACTGTCTTCCCCTAGCAGAT 58.606 52.381 0.00 0.00 0.00 2.90
5715 8130 2.615912 CCTAGCAGATTTGGTAAGCAGC 59.384 50.000 0.00 0.00 36.89 5.25
5748 8163 2.666272 TCAAGTGTACAATTGGGGCA 57.334 45.000 29.60 12.55 37.05 5.36
5805 8611 3.706594 TCGATTCTGGTCTATGGCTTCTT 59.293 43.478 0.00 0.00 0.00 2.52
5824 8630 4.801891 TCTTGCATTTCTGTTTGCTGATC 58.198 39.130 0.00 0.00 39.60 2.92
5872 8686 1.810151 TCGTTGCCCTTGCTAATTGAC 59.190 47.619 0.00 0.00 38.71 3.18
5883 8697 2.965831 TGCTAATTGACGGCTAGATCCT 59.034 45.455 0.00 0.00 0.00 3.24
5894 8708 3.685550 CGGCTAGATCCTGTTTCCCAAAT 60.686 47.826 0.00 0.00 0.00 2.32
5899 8713 3.593328 AGATCCTGTTTCCCAAATCCAGA 59.407 43.478 0.00 0.00 0.00 3.86
5934 8910 4.104417 GTCGCTCACTCGCCTCGT 62.104 66.667 0.00 0.00 0.00 4.18
5975 8953 0.535553 TTCAGGTAACACGGCCCAAC 60.536 55.000 0.00 0.00 41.41 3.77
6016 9001 4.044426 GGCTTATTCATCGTTTGGCAATC 58.956 43.478 0.00 0.00 0.00 2.67
6017 9002 4.044426 GCTTATTCATCGTTTGGCAATCC 58.956 43.478 0.00 0.00 0.00 3.01
6018 9003 2.849880 ATTCATCGTTTGGCAATCCG 57.150 45.000 0.00 7.13 34.14 4.18
6019 9004 0.808125 TTCATCGTTTGGCAATCCGG 59.192 50.000 16.50 0.00 34.14 5.14
6039 9024 0.940833 TAGAGAGCGAGCATCAGTCG 59.059 55.000 0.00 0.00 40.50 4.18
6149 9174 1.841556 TCCCTGGTGGTCCTGTGAC 60.842 63.158 0.00 0.00 40.98 3.67
6154 9179 1.344953 TGGTGGTCCTGTGACAAGCT 61.345 55.000 1.50 0.00 42.36 3.74
6166 9191 3.128589 TGTGACAAGCTTTTCAGTGAACC 59.871 43.478 15.46 3.92 0.00 3.62
6167 9192 2.687935 TGACAAGCTTTTCAGTGAACCC 59.312 45.455 11.24 0.00 0.00 4.11
6215 9240 2.763249 CTGTCACTCACAGTTTTGCC 57.237 50.000 0.00 0.00 46.81 4.52
6257 9282 1.385528 GGAATATGCCCGTTCCGTTT 58.614 50.000 0.00 0.00 35.03 3.60
6283 9312 3.290710 AGGAAATTCCAATGTGCGCTAT 58.709 40.909 15.21 0.00 39.61 2.97
6350 9379 6.461509 CCAACATGGAGCTAAATATGTTTCCC 60.462 42.308 12.11 0.00 40.96 3.97
6370 9399 5.538877 TCCCAGTAGATGAGAATTAACCCT 58.461 41.667 0.00 0.00 0.00 4.34
6373 9402 7.036863 TCCCAGTAGATGAGAATTAACCCTTTT 60.037 37.037 0.00 0.00 0.00 2.27
6392 9421 1.398692 TTTTTCTTTGTGCCGAGGCT 58.601 45.000 15.75 0.00 42.51 4.58
6396 9425 1.597854 CTTTGTGCCGAGGCTGACA 60.598 57.895 15.75 9.29 42.51 3.58
6397 9426 1.845809 CTTTGTGCCGAGGCTGACAC 61.846 60.000 15.75 5.56 42.51 3.67
6421 9450 6.721208 ACCATTCTGTTCTGTTGTTATTCCAT 59.279 34.615 0.00 0.00 0.00 3.41
6527 9562 0.817634 TCCAACAGTCCAACTTGGCG 60.818 55.000 2.52 0.00 37.47 5.69
6608 9647 2.897969 ACGGGGATCTACAGCGAATAAT 59.102 45.455 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.762381 TCCTGTATTATTTAAAATGGTCACCTT 57.238 29.630 0.00 0.00 0.00 3.50
35 36 9.936329 ATCCTGTATTATTTAAAATGGTCACCT 57.064 29.630 0.00 0.00 0.00 4.00
118 120 8.858003 TCTCAATGCGTGTTAAAAATTTGTTA 57.142 26.923 0.00 0.00 0.00 2.41
124 126 8.825745 ACAAAATTCTCAATGCGTGTTAAAAAT 58.174 25.926 0.00 0.00 0.00 1.82
220 222 8.171196 GCTCAATGAATATATAATCACCGTGTG 58.829 37.037 2.55 4.79 34.45 3.82
331 335 6.202954 AGTTCATTGAGTAGTACAAACAGTGC 59.797 38.462 2.52 0.00 0.00 4.40
334 338 8.612619 ACAAAGTTCATTGAGTAGTACAAACAG 58.387 33.333 2.52 0.00 34.38 3.16
723 733 3.829886 TTTTGAGGTGATAAAGCAGCG 57.170 42.857 0.00 0.00 40.96 5.18
747 757 3.244249 CGAGACAGGGGAGAGTTCTTTTT 60.244 47.826 0.00 0.00 0.00 1.94
748 758 2.300437 CGAGACAGGGGAGAGTTCTTTT 59.700 50.000 0.00 0.00 0.00 2.27
752 992 1.950973 GCCGAGACAGGGGAGAGTTC 61.951 65.000 0.00 0.00 0.00 3.01
772 1012 1.436336 CGATTTCGGGCGTAGAGGT 59.564 57.895 0.00 0.00 35.37 3.85
892 1137 0.252012 AGGTGTGTGAGGAGAGGAGG 60.252 60.000 0.00 0.00 0.00 4.30
899 1144 3.680786 CGCGGAGGTGTGTGAGGA 61.681 66.667 0.00 0.00 0.00 3.71
908 1153 3.667217 TAGGGTTAGCCGCGGAGGT 62.667 63.158 33.48 15.34 43.70 3.85
1137 1387 2.611518 CACTCCTGAGCTAAAACTCGG 58.388 52.381 0.00 0.00 41.86 4.63
1138 1388 2.028930 ACCACTCCTGAGCTAAAACTCG 60.029 50.000 0.00 0.00 39.68 4.18
1139 1389 3.686916 ACCACTCCTGAGCTAAAACTC 57.313 47.619 0.00 0.00 37.19 3.01
1140 1390 3.244596 GGAACCACTCCTGAGCTAAAACT 60.245 47.826 0.00 0.00 41.61 2.66
1141 1391 3.075148 GGAACCACTCCTGAGCTAAAAC 58.925 50.000 0.00 0.00 41.61 2.43
1142 1392 3.418684 GGAACCACTCCTGAGCTAAAA 57.581 47.619 0.00 0.00 41.61 1.52
1158 1425 2.418976 CGAAGAGGAAAATTCGGGGAAC 59.581 50.000 0.00 0.00 43.42 3.62
1380 2028 9.693739 TCTATAGCAATTTGTGAGGGAAATAAA 57.306 29.630 0.00 0.00 0.00 1.40
1516 3549 4.377897 ACTGTCCAGTAAAGCAGTAACAC 58.622 43.478 0.00 0.00 40.43 3.32
1596 3636 1.329906 GAGCTGCCTGTTCATCATTCG 59.670 52.381 0.00 0.00 0.00 3.34
1598 3638 2.366533 CAGAGCTGCCTGTTCATCATT 58.633 47.619 0.00 0.00 0.00 2.57
1635 3679 1.983972 CGTGTCTGACTGGAACTAGC 58.016 55.000 9.51 0.00 0.00 3.42
2002 4132 9.550406 AGCCAAAATTTCATATACATTGATTGG 57.450 29.630 0.00 0.00 34.70 3.16
2005 4135 9.754382 GACAGCCAAAATTTCATATACATTGAT 57.246 29.630 0.00 0.00 0.00 2.57
2019 4149 7.243604 TGGAATGAATAAGACAGCCAAAATT 57.756 32.000 0.00 0.00 0.00 1.82
2020 4150 6.855763 TGGAATGAATAAGACAGCCAAAAT 57.144 33.333 0.00 0.00 0.00 1.82
2022 4152 6.436847 TGATTGGAATGAATAAGACAGCCAAA 59.563 34.615 0.00 0.00 38.30 3.28
2023 4153 5.951148 TGATTGGAATGAATAAGACAGCCAA 59.049 36.000 0.00 0.00 38.75 4.52
2024 4154 5.508567 TGATTGGAATGAATAAGACAGCCA 58.491 37.500 0.00 0.00 0.00 4.75
2025 4155 6.455360 TTGATTGGAATGAATAAGACAGCC 57.545 37.500 0.00 0.00 0.00 4.85
2026 4156 7.486647 ACATTGATTGGAATGAATAAGACAGC 58.513 34.615 0.00 0.00 36.89 4.40
2083 4213 3.777478 CAGGGCATCAATTGTAAAGCAG 58.223 45.455 5.13 0.00 0.00 4.24
2093 4223 0.833287 AGTAGACGCAGGGCATCAAT 59.167 50.000 0.00 0.00 0.00 2.57
2612 4742 1.904032 CAGAGAGCAAGGGAGGGTC 59.096 63.158 0.00 0.00 0.00 4.46
2746 4878 0.961019 TTTCCACACTTGCCATGAGC 59.039 50.000 0.00 0.00 44.14 4.26
2766 4910 8.060679 CGAACAAGAGAAATATGATCATGTGAC 58.939 37.037 18.72 9.29 0.00 3.67
2795 4943 8.800370 TGTTATGCCACAACAGAATATCTAAA 57.200 30.769 0.00 0.00 32.32 1.85
2878 5035 2.909006 AGGAGAGCCAATTCAAGTGAGA 59.091 45.455 0.00 0.00 36.29 3.27
2887 5044 6.352516 CAGAATACAAGTAGGAGAGCCAATT 58.647 40.000 0.00 0.00 36.29 2.32
2888 5045 5.686124 GCAGAATACAAGTAGGAGAGCCAAT 60.686 44.000 0.00 0.00 36.29 3.16
3110 5280 6.648725 TGCTGCAATTGCGTACTATATTATCA 59.351 34.615 24.58 3.02 45.83 2.15
3192 5540 6.128795 GCACACGAAGGTATGATAATAAGCTC 60.129 42.308 0.00 0.00 0.00 4.09
3203 5551 1.394917 GCTTGAGCACACGAAGGTATG 59.605 52.381 0.00 0.00 41.59 2.39
3335 5690 6.549061 CACAATTGATAATGTGGACTGAGTG 58.451 40.000 13.59 0.00 42.46 3.51
3367 5722 9.066892 AGCTTGTGAACTTTATGTTTCTTATCA 57.933 29.630 0.00 0.00 39.30 2.15
3404 5761 5.155278 AGCAGATGATCAAAAATTTGGCA 57.845 34.783 0.00 5.66 38.66 4.92
3469 5828 4.275936 CAGGAACAAGAACAACGATTCCTT 59.724 41.667 0.56 0.00 42.58 3.36
3525 5885 2.010145 ATTGTCCTTCGTCGGATGTG 57.990 50.000 0.00 0.00 35.11 3.21
3739 6106 2.102109 CTTGTGGCTGGGCATTTGCA 62.102 55.000 4.74 0.00 44.36 4.08
4057 6427 9.165057 AGCCTATGAAGATAAGTAGATTTTCCT 57.835 33.333 0.00 0.00 0.00 3.36
4058 6428 9.785982 AAGCCTATGAAGATAAGTAGATTTTCC 57.214 33.333 0.00 0.00 0.00 3.13
4166 6558 2.498167 GAGAACAATGCTGTCCACAGT 58.502 47.619 8.49 0.00 45.45 3.55
4204 6597 2.305927 CACCTCCCATTGTACAAGGACT 59.694 50.000 21.22 0.00 0.00 3.85
4205 6598 2.711542 CACCTCCCATTGTACAAGGAC 58.288 52.381 21.22 0.00 0.00 3.85
4206 6599 1.004277 GCACCTCCCATTGTACAAGGA 59.996 52.381 21.22 17.28 0.00 3.36
4207 6600 1.004745 AGCACCTCCCATTGTACAAGG 59.995 52.381 14.65 13.92 0.00 3.61
4208 6601 2.496899 AGCACCTCCCATTGTACAAG 57.503 50.000 14.65 6.30 0.00 3.16
4209 6602 2.969821 AAGCACCTCCCATTGTACAA 57.030 45.000 11.41 11.41 0.00 2.41
4210 6603 3.178046 TCTAAGCACCTCCCATTGTACA 58.822 45.455 0.00 0.00 0.00 2.90
4211 6604 3.906720 TCTAAGCACCTCCCATTGTAC 57.093 47.619 0.00 0.00 0.00 2.90
4212 6605 4.919774 TTTCTAAGCACCTCCCATTGTA 57.080 40.909 0.00 0.00 0.00 2.41
4213 6606 3.806949 TTTCTAAGCACCTCCCATTGT 57.193 42.857 0.00 0.00 0.00 2.71
4214 6607 5.665916 ATTTTTCTAAGCACCTCCCATTG 57.334 39.130 0.00 0.00 0.00 2.82
4215 6608 7.310423 GGTTTATTTTTCTAAGCACCTCCCATT 60.310 37.037 0.00 0.00 0.00 3.16
4216 6609 6.154534 GGTTTATTTTTCTAAGCACCTCCCAT 59.845 38.462 0.00 0.00 0.00 4.00
4217 6610 5.479027 GGTTTATTTTTCTAAGCACCTCCCA 59.521 40.000 0.00 0.00 0.00 4.37
4218 6611 5.392703 CGGTTTATTTTTCTAAGCACCTCCC 60.393 44.000 0.00 0.00 0.00 4.30
4219 6612 5.392703 CCGGTTTATTTTTCTAAGCACCTCC 60.393 44.000 0.00 0.00 0.00 4.30
4220 6613 5.392703 CCCGGTTTATTTTTCTAAGCACCTC 60.393 44.000 0.00 0.00 0.00 3.85
4221 6614 4.461431 CCCGGTTTATTTTTCTAAGCACCT 59.539 41.667 0.00 0.00 0.00 4.00
4222 6615 4.219070 ACCCGGTTTATTTTTCTAAGCACC 59.781 41.667 0.00 0.00 0.00 5.01
4223 6616 5.381174 ACCCGGTTTATTTTTCTAAGCAC 57.619 39.130 0.00 0.00 0.00 4.40
4224 6617 6.408107 AAACCCGGTTTATTTTTCTAAGCA 57.592 33.333 14.16 0.00 33.70 3.91
4225 6618 7.718272 AAAAACCCGGTTTATTTTTCTAAGC 57.282 32.000 16.03 0.00 34.43 3.09
4230 6623 7.517734 GCTTCAGAAAAACCCGGTTTATTTTTC 60.518 37.037 22.79 22.79 45.95 2.29
4231 6624 6.259167 GCTTCAGAAAAACCCGGTTTATTTTT 59.741 34.615 16.03 6.68 38.03 1.94
4232 6625 5.756347 GCTTCAGAAAAACCCGGTTTATTTT 59.244 36.000 16.03 7.04 34.43 1.82
4233 6626 5.163395 TGCTTCAGAAAAACCCGGTTTATTT 60.163 36.000 16.03 7.76 34.43 1.40
4234 6627 4.342665 TGCTTCAGAAAAACCCGGTTTATT 59.657 37.500 16.03 11.90 34.43 1.40
4235 6628 3.892588 TGCTTCAGAAAAACCCGGTTTAT 59.107 39.130 16.03 3.02 34.43 1.40
4236 6629 3.067040 GTGCTTCAGAAAAACCCGGTTTA 59.933 43.478 16.03 0.00 34.43 2.01
4237 6630 2.104170 TGCTTCAGAAAAACCCGGTTT 58.896 42.857 9.92 9.92 37.34 3.27
4238 6631 1.407618 GTGCTTCAGAAAAACCCGGTT 59.592 47.619 0.00 0.00 0.00 4.44
4239 6632 1.029681 GTGCTTCAGAAAAACCCGGT 58.970 50.000 0.00 0.00 0.00 5.28
4240 6633 0.313987 GGTGCTTCAGAAAAACCCGG 59.686 55.000 0.00 0.00 0.00 5.73
4241 6634 0.040425 CGGTGCTTCAGAAAAACCCG 60.040 55.000 7.91 3.09 0.00 5.28
4242 6635 0.313987 CCGGTGCTTCAGAAAAACCC 59.686 55.000 0.00 0.00 0.00 4.11
4243 6636 1.029681 ACCGGTGCTTCAGAAAAACC 58.970 50.000 6.12 4.42 0.00 3.27
4244 6637 2.119671 CACCGGTGCTTCAGAAAAAC 57.880 50.000 24.02 0.00 0.00 2.43
4256 6649 2.550978 CTGTAGAAATAGGCACCGGTG 58.449 52.381 30.66 30.66 0.00 4.94
4257 6650 1.485066 CCTGTAGAAATAGGCACCGGT 59.515 52.381 0.00 0.00 0.00 5.28
4258 6651 1.760613 TCCTGTAGAAATAGGCACCGG 59.239 52.381 0.00 0.00 34.08 5.28
4259 6652 2.693591 TCTCCTGTAGAAATAGGCACCG 59.306 50.000 0.00 0.00 34.08 4.94
4260 6653 3.961408 TCTCTCCTGTAGAAATAGGCACC 59.039 47.826 0.00 0.00 34.08 5.01
4261 6654 4.498345 CGTCTCTCCTGTAGAAATAGGCAC 60.498 50.000 0.00 0.00 34.08 5.01
4262 6655 3.632604 CGTCTCTCCTGTAGAAATAGGCA 59.367 47.826 0.00 0.00 34.08 4.75
4263 6656 3.551250 GCGTCTCTCCTGTAGAAATAGGC 60.551 52.174 0.00 0.00 34.08 3.93
4264 6657 3.886505 AGCGTCTCTCCTGTAGAAATAGG 59.113 47.826 0.00 0.00 35.36 2.57
4265 6658 5.508200 AAGCGTCTCTCCTGTAGAAATAG 57.492 43.478 0.00 0.00 32.46 1.73
4266 6659 6.120905 ACTAAGCGTCTCTCCTGTAGAAATA 58.879 40.000 0.00 0.00 32.46 1.40
4267 6660 4.951094 ACTAAGCGTCTCTCCTGTAGAAAT 59.049 41.667 0.00 0.00 32.46 2.17
4268 6661 4.333690 ACTAAGCGTCTCTCCTGTAGAAA 58.666 43.478 0.00 0.00 32.46 2.52
4269 6662 3.952931 ACTAAGCGTCTCTCCTGTAGAA 58.047 45.455 0.00 0.00 32.46 2.10
4270 6663 3.630892 ACTAAGCGTCTCTCCTGTAGA 57.369 47.619 0.00 0.00 0.00 2.59
4271 6664 5.812652 CTTAACTAAGCGTCTCTCCTGTAG 58.187 45.833 0.00 0.00 0.00 2.74
4272 6665 5.814764 CTTAACTAAGCGTCTCTCCTGTA 57.185 43.478 0.00 0.00 0.00 2.74
4273 6666 4.705337 CTTAACTAAGCGTCTCTCCTGT 57.295 45.455 0.00 0.00 0.00 4.00
4285 6678 8.906636 TTGTACAAGATAGACGCTTAACTAAG 57.093 34.615 3.59 0.00 36.40 2.18
4286 6679 9.865321 ATTTGTACAAGATAGACGCTTAACTAA 57.135 29.630 8.56 0.00 0.00 2.24
4288 6681 9.865321 TTATTTGTACAAGATAGACGCTTAACT 57.135 29.630 8.56 0.00 0.00 2.24
4290 6683 8.814235 GCTTATTTGTACAAGATAGACGCTTAA 58.186 33.333 8.56 0.00 0.00 1.85
4291 6684 7.977293 TGCTTATTTGTACAAGATAGACGCTTA 59.023 33.333 8.56 0.00 0.00 3.09
4292 6685 6.816640 TGCTTATTTGTACAAGATAGACGCTT 59.183 34.615 8.56 0.00 0.00 4.68
4293 6686 6.255887 GTGCTTATTTGTACAAGATAGACGCT 59.744 38.462 8.56 0.00 0.00 5.07
4294 6687 6.411652 GTGCTTATTTGTACAAGATAGACGC 58.588 40.000 8.56 12.19 0.00 5.19
4295 6688 6.291637 CGGTGCTTATTTGTACAAGATAGACG 60.292 42.308 8.56 5.09 0.00 4.18
4296 6689 6.018994 CCGGTGCTTATTTGTACAAGATAGAC 60.019 42.308 8.56 3.30 0.00 2.59
4297 6690 6.046593 CCGGTGCTTATTTGTACAAGATAGA 58.953 40.000 8.56 0.00 0.00 1.98
4298 6691 5.815740 ACCGGTGCTTATTTGTACAAGATAG 59.184 40.000 6.12 8.20 0.00 2.08
4299 6692 5.583061 CACCGGTGCTTATTTGTACAAGATA 59.417 40.000 24.02 7.27 0.00 1.98
4300 6693 4.394920 CACCGGTGCTTATTTGTACAAGAT 59.605 41.667 24.02 8.17 0.00 2.40
4301 6694 3.749088 CACCGGTGCTTATTTGTACAAGA 59.251 43.478 24.02 0.90 0.00 3.02
4302 6695 4.078363 CACCGGTGCTTATTTGTACAAG 57.922 45.455 24.02 0.00 0.00 3.16
4316 6709 1.068541 GGCTTTTCTTAAGCACCGGTG 60.069 52.381 30.66 30.66 44.71 4.94
4317 6710 1.202891 AGGCTTTTCTTAAGCACCGGT 60.203 47.619 0.00 0.00 44.71 5.28
4318 6711 1.200020 CAGGCTTTTCTTAAGCACCGG 59.800 52.381 0.00 0.00 44.71 5.28
4319 6712 1.200020 CCAGGCTTTTCTTAAGCACCG 59.800 52.381 11.18 0.00 44.71 4.94
4320 6713 2.239400 ACCAGGCTTTTCTTAAGCACC 58.761 47.619 11.18 0.00 44.71 5.01
4321 6714 4.322080 AAACCAGGCTTTTCTTAAGCAC 57.678 40.909 11.18 1.86 44.71 4.40
4322 6715 5.351948 AAAAACCAGGCTTTTCTTAAGCA 57.648 34.783 11.18 0.00 44.71 3.91
4342 6735 4.657814 ATGGGAGGTGCTTAGAGAAAAA 57.342 40.909 0.00 0.00 0.00 1.94
4343 6736 4.202567 ACAATGGGAGGTGCTTAGAGAAAA 60.203 41.667 0.00 0.00 0.00 2.29
4344 6737 3.330701 ACAATGGGAGGTGCTTAGAGAAA 59.669 43.478 0.00 0.00 0.00 2.52
4345 6738 2.912956 ACAATGGGAGGTGCTTAGAGAA 59.087 45.455 0.00 0.00 0.00 2.87
4346 6739 2.551270 ACAATGGGAGGTGCTTAGAGA 58.449 47.619 0.00 0.00 0.00 3.10
4347 6740 3.197766 TGTACAATGGGAGGTGCTTAGAG 59.802 47.826 0.00 0.00 0.00 2.43
4348 6741 3.178046 TGTACAATGGGAGGTGCTTAGA 58.822 45.455 0.00 0.00 0.00 2.10
4349 6742 3.627395 TGTACAATGGGAGGTGCTTAG 57.373 47.619 0.00 0.00 0.00 2.18
4350 6743 3.308117 CCTTGTACAATGGGAGGTGCTTA 60.308 47.826 9.13 0.00 0.00 3.09
4351 6744 2.555227 CCTTGTACAATGGGAGGTGCTT 60.555 50.000 9.13 0.00 0.00 3.91
4352 6745 1.004745 CCTTGTACAATGGGAGGTGCT 59.995 52.381 9.13 0.00 0.00 4.40
4353 6746 1.463674 CCTTGTACAATGGGAGGTGC 58.536 55.000 9.13 0.00 0.00 5.01
4354 6747 1.463674 GCCTTGTACAATGGGAGGTG 58.536 55.000 16.08 0.00 0.00 4.00
4355 6748 0.331616 GGCCTTGTACAATGGGAGGT 59.668 55.000 16.08 0.00 0.00 3.85
4356 6749 0.625849 AGGCCTTGTACAATGGGAGG 59.374 55.000 16.08 11.34 0.00 4.30
4357 6750 2.514458 AAGGCCTTGTACAATGGGAG 57.486 50.000 19.73 1.65 0.00 4.30
4358 6751 3.897239 CATAAGGCCTTGTACAATGGGA 58.103 45.455 28.77 3.74 0.00 4.37
4359 6752 2.362077 GCATAAGGCCTTGTACAATGGG 59.638 50.000 28.77 14.91 36.11 4.00
4360 6753 3.290710 AGCATAAGGCCTTGTACAATGG 58.709 45.455 28.77 13.26 46.50 3.16
4361 6754 5.126067 AGTAGCATAAGGCCTTGTACAATG 58.874 41.667 28.77 22.30 46.50 2.82
4362 6755 5.373812 AGTAGCATAAGGCCTTGTACAAT 57.626 39.130 28.77 10.23 46.50 2.71
4363 6756 4.837093 AGTAGCATAAGGCCTTGTACAA 57.163 40.909 28.77 7.95 46.50 2.41
4364 6757 5.943349 TTAGTAGCATAAGGCCTTGTACA 57.057 39.130 28.77 8.38 46.50 2.90
4365 6758 6.204882 CCATTTAGTAGCATAAGGCCTTGTAC 59.795 42.308 28.77 20.90 46.50 2.90
4366 6759 6.126594 ACCATTTAGTAGCATAAGGCCTTGTA 60.127 38.462 28.77 9.67 46.50 2.41
4367 6760 5.133221 CCATTTAGTAGCATAAGGCCTTGT 58.867 41.667 28.77 19.61 46.50 3.16
4368 6761 5.133221 ACCATTTAGTAGCATAAGGCCTTG 58.867 41.667 28.77 14.55 46.50 3.61
4369 6762 5.388599 ACCATTTAGTAGCATAAGGCCTT 57.611 39.130 24.18 24.18 46.50 4.35
4370 6763 5.607171 ACTACCATTTAGTAGCATAAGGCCT 59.393 40.000 0.00 0.00 46.50 5.19
4371 6764 5.866207 ACTACCATTTAGTAGCATAAGGCC 58.134 41.667 0.00 0.00 46.50 5.19
4372 6765 5.932883 GGACTACCATTTAGTAGCATAAGGC 59.067 44.000 0.00 0.00 42.97 4.35
4373 6766 6.270231 AGGGACTACCATTTAGTAGCATAAGG 59.730 42.308 0.00 0.00 42.97 2.69
4374 6767 7.304497 AGGGACTACCATTTAGTAGCATAAG 57.696 40.000 0.00 0.00 42.97 1.73
4375 6768 6.269307 GGAGGGACTACCATTTAGTAGCATAA 59.731 42.308 0.00 0.00 42.97 1.90
4376 6769 5.778750 GGAGGGACTACCATTTAGTAGCATA 59.221 44.000 0.00 0.00 42.97 3.14
4417 6810 6.542005 TCTGTCAACTTTGAACTAAATCAGCA 59.458 34.615 0.00 0.00 39.21 4.41
4817 7220 3.261897 ACTTGTCATGTCAGTTCCCCTAG 59.738 47.826 0.00 0.00 0.00 3.02
4818 7221 3.248024 ACTTGTCATGTCAGTTCCCCTA 58.752 45.455 0.00 0.00 0.00 3.53
4881 7284 4.219070 GGGCCATATATCTGTGTACGTACA 59.781 45.833 24.10 24.10 0.00 2.90
4887 7290 5.762279 TCGATAGGGCCATATATCTGTGTA 58.238 41.667 10.49 0.00 0.00 2.90
4987 7390 3.063997 AGCTAATATCTGCAACGCACAAC 59.936 43.478 0.00 0.00 33.79 3.32
5066 7469 2.360475 GTCTGCTGCCCAACCTCC 60.360 66.667 0.00 0.00 0.00 4.30
5304 7715 3.313690 TGTGATAGTAACGCACACACTG 58.686 45.455 0.00 0.00 37.60 3.66
5310 7721 2.667473 ACCCTGTGATAGTAACGCAC 57.333 50.000 0.00 0.00 0.00 5.34
5311 7722 3.244284 ACAAACCCTGTGATAGTAACGCA 60.244 43.478 0.00 0.00 36.69 5.24
5314 7725 6.092259 GTGATGACAAACCCTGTGATAGTAAC 59.908 42.308 0.00 0.00 38.84 2.50
5340 7751 4.736473 AGTACCAACAATAAACTGGCCTT 58.264 39.130 3.32 0.00 33.19 4.35
5417 7828 2.174319 GGCAACTACGCTAGCAGGC 61.174 63.158 16.45 8.00 0.00 4.85
5481 7892 6.769822 CAGGCTAGGAAGATGACATGTTATTT 59.230 38.462 4.41 0.00 0.00 1.40
5517 7928 6.838090 AGAGGATCATGAGTTCAGAATACAGA 59.162 38.462 0.09 0.00 37.82 3.41
5642 8053 1.425066 TGGGAATTCTTGTGCAGGAGT 59.575 47.619 5.23 0.00 0.00 3.85
5703 8118 1.065782 TCTATGCGGCTGCTTACCAAA 60.066 47.619 20.27 0.00 43.34 3.28
5715 8130 3.525537 ACACTTGATGAAGTCTATGCGG 58.474 45.455 0.00 0.00 40.68 5.69
5748 8163 3.152341 AGTGCAGCTGCTAAGAAACAAT 58.848 40.909 36.61 12.77 42.66 2.71
5805 8611 3.822167 TCTGATCAGCAAACAGAAATGCA 59.178 39.130 18.36 0.00 44.95 3.96
5824 8630 9.295214 GATACACGATAATTCCTACATGATCTG 57.705 37.037 0.00 0.00 0.00 2.90
5872 8686 0.830648 TGGGAAACAGGATCTAGCCG 59.169 55.000 0.00 0.00 0.00 5.52
5883 8697 4.722526 TCTCTTCTGGATTTGGGAAACA 57.277 40.909 0.00 0.00 0.00 2.83
5894 8708 2.968574 AGTTCTGTGCTTCTCTTCTGGA 59.031 45.455 0.00 0.00 0.00 3.86
5899 8713 3.126831 CGACAAGTTCTGTGCTTCTCTT 58.873 45.455 0.00 0.00 38.84 2.85
5943 8919 2.030562 CTGAACCGGTCCAACGCT 59.969 61.111 8.04 0.00 0.00 5.07
5975 8953 1.067635 CCTTTTTCTTGGTGATGCGGG 60.068 52.381 0.00 0.00 0.00 6.13
6016 9001 1.284408 GATGCTCGCTCTCTACCGG 59.716 63.158 0.00 0.00 0.00 5.28
6017 9002 0.040514 CTGATGCTCGCTCTCTACCG 60.041 60.000 0.00 0.00 0.00 4.02
6018 9003 1.001815 GACTGATGCTCGCTCTCTACC 60.002 57.143 0.00 0.00 0.00 3.18
6019 9004 1.333702 CGACTGATGCTCGCTCTCTAC 60.334 57.143 0.00 0.00 0.00 2.59
6039 9024 1.199097 CACACGGCCCAGTTTTGTATC 59.801 52.381 0.00 0.00 0.00 2.24
6149 9174 2.294512 GAGGGGTTCACTGAAAAGCTTG 59.705 50.000 0.00 0.00 0.00 4.01
6154 9179 2.445145 TGATGGAGGGGTTCACTGAAAA 59.555 45.455 0.00 0.00 0.00 2.29
6257 9282 4.804108 CGCACATTGGAATTTCCTTTACA 58.196 39.130 16.25 0.00 37.46 2.41
6373 9402 1.066908 CAGCCTCGGCACAAAGAAAAA 59.933 47.619 11.02 0.00 44.88 1.94
6377 9406 1.301716 GTCAGCCTCGGCACAAAGA 60.302 57.895 11.02 0.00 44.88 2.52
6378 9407 1.597854 TGTCAGCCTCGGCACAAAG 60.598 57.895 11.02 0.00 44.88 2.77
6379 9408 1.891919 GTGTCAGCCTCGGCACAAA 60.892 57.895 11.02 0.00 44.88 2.83
6380 9409 2.280797 GTGTCAGCCTCGGCACAA 60.281 61.111 11.02 0.00 44.88 3.33
6381 9410 4.314440 GGTGTCAGCCTCGGCACA 62.314 66.667 11.02 3.85 44.88 4.57
6383 9412 2.803155 GAATGGTGTCAGCCTCGGCA 62.803 60.000 11.02 0.00 44.88 5.69
6385 9414 0.742281 CAGAATGGTGTCAGCCTCGG 60.742 60.000 0.00 0.00 0.00 4.63
6386 9415 0.036952 ACAGAATGGTGTCAGCCTCG 60.037 55.000 0.00 0.00 43.62 4.63
6387 9416 2.079925 GAACAGAATGGTGTCAGCCTC 58.920 52.381 0.00 0.00 33.00 4.70
6388 9417 1.701847 AGAACAGAATGGTGTCAGCCT 59.298 47.619 0.00 0.00 33.00 4.58
6389 9418 1.808945 CAGAACAGAATGGTGTCAGCC 59.191 52.381 0.00 0.00 33.00 4.85
6392 9421 3.884895 ACAACAGAACAGAATGGTGTCA 58.115 40.909 0.00 0.00 43.78 3.58
6396 9425 6.068010 TGGAATAACAACAGAACAGAATGGT 58.932 36.000 0.00 0.00 42.46 3.55
6397 9426 6.573664 TGGAATAACAACAGAACAGAATGG 57.426 37.500 0.00 0.00 43.62 3.16
6421 9450 4.994471 CCTCCGTGCAGTGCAGCA 62.994 66.667 20.42 4.10 40.08 4.41
6527 9562 2.414691 GGAGCAAGAAAGCGAAATGGAC 60.415 50.000 0.00 0.00 40.15 4.02
6616 9655 2.346284 TTTGTGGACAGGAACCGGGG 62.346 60.000 6.32 0.00 0.00 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.