Multiple sequence alignment - TraesCS4B01G041800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G041800 chr4B 100.000 4865 0 0 1 4865 28710339 28715203 0.000000e+00 8985.0
1 TraesCS4B01G041800 chr4D 94.572 1179 59 4 1919 3096 16794653 16795827 0.000000e+00 1818.0
2 TraesCS4B01G041800 chr4D 94.479 1123 37 15 3201 4317 16795827 16796930 0.000000e+00 1707.0
3 TraesCS4B01G041800 chr4D 91.559 1244 53 19 683 1903 16793347 16794561 0.000000e+00 1668.0
4 TraesCS4B01G041800 chr4D 92.991 642 36 3 1 640 16791594 16792228 0.000000e+00 928.0
5 TraesCS4B01G041800 chr4D 85.028 541 41 15 4348 4863 16796929 16797454 9.340000e-142 514.0
6 TraesCS4B01G041800 chr4D 92.308 52 4 0 3090 3141 61847263 61847212 1.880000e-09 75.0
7 TraesCS4B01G041800 chr4D 82.051 78 13 1 3100 3176 320594164 320594087 1.130000e-06 65.8
8 TraesCS4B01G041800 chr4A 88.565 1303 81 29 643 1920 583763808 583762549 0.000000e+00 1519.0
9 TraesCS4B01G041800 chr4A 93.823 939 54 4 1910 2847 583762497 583761562 0.000000e+00 1410.0
10 TraesCS4B01G041800 chr4A 89.397 896 73 13 3267 4158 583760862 583759985 0.000000e+00 1109.0
11 TraesCS4B01G041800 chr4A 89.531 640 59 4 5 643 583785163 583784531 0.000000e+00 804.0
12 TraesCS4B01G041800 chr4A 84.615 364 44 4 1048 1407 744427107 744427462 7.750000e-93 351.0
13 TraesCS4B01G041800 chr4A 87.786 262 19 10 2841 3096 583761149 583760895 1.320000e-75 294.0
14 TraesCS4B01G041800 chr4A 88.525 61 6 1 4753 4813 583759381 583759322 6.750000e-09 73.1
15 TraesCS4B01G041800 chr4A 100.000 28 0 0 4836 4863 583759315 583759288 9.000000e-03 52.8
16 TraesCS4B01G041800 chr7A 97.872 47 1 0 3095 3141 549532342 549532296 1.120000e-11 82.4
17 TraesCS4B01G041800 chr6B 97.872 47 1 0 3095 3141 705887910 705887864 1.120000e-11 82.4
18 TraesCS4B01G041800 chr2D 96.000 50 2 0 3092 3141 263419065 263419114 1.120000e-11 82.4
19 TraesCS4B01G041800 chr7D 94.340 53 2 1 3089 3141 51686002 51685951 4.040000e-11 80.5
20 TraesCS4B01G041800 chr2B 92.727 55 3 1 3095 3149 123062178 123062231 1.450000e-10 78.7
21 TraesCS4B01G041800 chr7B 95.745 47 2 0 3095 3141 713459673 713459627 5.220000e-10 76.8
22 TraesCS4B01G041800 chr5A 95.745 47 2 0 3095 3141 596551351 596551397 5.220000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G041800 chr4B 28710339 28715203 4864 False 8985.000000 8985 100.000000 1 4865 1 chr4B.!!$F1 4864
1 TraesCS4B01G041800 chr4D 16791594 16797454 5860 False 1327.000000 1818 91.725800 1 4863 5 chr4D.!!$F1 4862
2 TraesCS4B01G041800 chr4A 583784531 583785163 632 True 804.000000 804 89.531000 5 643 1 chr4A.!!$R1 638
3 TraesCS4B01G041800 chr4A 583759288 583763808 4520 True 742.983333 1519 91.349333 643 4863 6 chr4A.!!$R2 4220

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
680 761 1.520600 CGGCAACCCAACAACCCTAC 61.521 60.000 0.0 0.0 0.0 3.18 F
2302 3489 1.004745 TCTTTCCCCCAACTGATGAGC 59.995 52.381 0.0 0.0 0.0 4.26 F
3111 4724 0.041238 CCTACTCCCTCTGTCCCACA 59.959 60.000 0.0 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2643 3830 0.441145 AAACATCGACGGTTAAGCGC 59.559 50.0 25.71 17.06 0.0 5.92 R
3155 4768 0.113776 ACTACTCCCTTCGTCCCACA 59.886 55.0 0.00 0.00 0.0 4.17 R
4758 6461 0.528470 GAAGTGTCGCTGAGCCTACT 59.472 55.0 0.00 0.00 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
149 151 3.792401 TCATAGTTGCGACTAACCATGG 58.208 45.455 17.76 11.19 41.48 3.66
312 315 8.684386 TTAGGACACATTTGATTCAAACTGTA 57.316 30.769 13.80 2.40 36.13 2.74
373 376 4.430908 CATACCCTCTTTAGTTCCACGTC 58.569 47.826 0.00 0.00 0.00 4.34
377 380 2.561419 CCTCTTTAGTTCCACGTCTGGA 59.439 50.000 0.00 0.00 45.68 3.86
425 428 5.046591 ACATGAAAAGACTAATCTCGACCCA 60.047 40.000 0.00 0.00 32.34 4.51
445 448 7.254455 CGACCCATTCTTAAATAGTGTCATCAC 60.254 40.741 0.00 0.00 44.15 3.06
455 458 2.851195 AGTGTCATCACAGGGACAAAC 58.149 47.619 0.00 0.00 44.83 2.93
459 462 4.154195 GTGTCATCACAGGGACAAACATAC 59.846 45.833 0.00 0.00 44.83 2.39
466 469 7.387265 TCACAGGGACAAACATACCATATAT 57.613 36.000 0.00 0.00 0.00 0.86
500 503 6.156256 ACCAAGTGCATTATCACTCCTAGTTA 59.844 38.462 0.00 0.00 45.77 2.24
547 550 6.692486 AGTTCTCGTATCAGACAGTTTTCAT 58.308 36.000 0.00 0.00 0.00 2.57
555 558 7.326789 CGTATCAGACAGTTTTCATTGCAAAAT 59.673 33.333 1.71 0.00 0.00 1.82
601 605 6.885735 AGTTTTGTTGAAAATTTGACCTCG 57.114 33.333 0.00 0.00 33.63 4.63
606 610 4.278170 TGTTGAAAATTTGACCTCGCAGAT 59.722 37.500 0.00 0.00 33.89 2.90
609 613 4.701651 TGAAAATTTGACCTCGCAGATCAT 59.298 37.500 0.00 0.00 33.89 2.45
680 761 1.520600 CGGCAACCCAACAACCCTAC 61.521 60.000 0.00 0.00 0.00 3.18
778 1866 4.415783 CCCTGGTAACTTGTGGGC 57.584 61.111 0.00 0.00 37.61 5.36
801 1889 1.966451 CGAGTCAAACCCAGGCCAC 60.966 63.158 5.01 0.00 0.00 5.01
802 1890 1.603739 GAGTCAAACCCAGGCCACC 60.604 63.158 5.01 0.00 0.00 4.61
803 1891 2.197324 GTCAAACCCAGGCCACCA 59.803 61.111 5.01 0.00 0.00 4.17
952 2040 2.197324 CCTCCTCCTCCTCCTCGG 59.803 72.222 0.00 0.00 0.00 4.63
1334 2441 1.337071 TGTCTTCTGGATCGCGGATAC 59.663 52.381 6.13 0.00 0.00 2.24
1344 2451 2.522638 CGCGGATACTTTCGTGGCC 61.523 63.158 0.00 0.00 33.83 5.36
1364 2471 2.675844 CCGCGGAATGTAGTTTGAATCA 59.324 45.455 24.07 0.00 0.00 2.57
1365 2472 3.312421 CCGCGGAATGTAGTTTGAATCAT 59.688 43.478 24.07 0.00 0.00 2.45
1366 2473 4.509970 CCGCGGAATGTAGTTTGAATCATA 59.490 41.667 24.07 0.00 0.00 2.15
1367 2474 5.432157 CGCGGAATGTAGTTTGAATCATAC 58.568 41.667 0.00 0.00 0.00 2.39
1403 2510 2.034685 TGAGGCGTCGATTTGATCTAGG 59.965 50.000 0.00 0.00 0.00 3.02
1404 2511 2.293677 GAGGCGTCGATTTGATCTAGGA 59.706 50.000 0.00 0.00 0.00 2.94
1405 2512 2.294791 AGGCGTCGATTTGATCTAGGAG 59.705 50.000 0.00 0.00 0.00 3.69
1406 2513 2.034812 GGCGTCGATTTGATCTAGGAGT 59.965 50.000 0.00 0.00 0.00 3.85
1407 2514 3.252701 GGCGTCGATTTGATCTAGGAGTA 59.747 47.826 0.00 0.00 0.00 2.59
1408 2515 4.468643 GCGTCGATTTGATCTAGGAGTAG 58.531 47.826 0.00 0.00 0.00 2.57
1418 2525 5.498393 TGATCTAGGAGTAGTGAGTTTCGT 58.502 41.667 0.00 0.00 0.00 3.85
1520 2628 1.470632 GCTCTACTCGATGCAAGCACT 60.471 52.381 0.00 0.00 0.00 4.40
1523 2631 1.923204 CTACTCGATGCAAGCACTGAC 59.077 52.381 0.00 0.00 0.00 3.51
1551 2659 8.519526 CAATTAGGAAATAAACAGCAAGGTGTA 58.480 33.333 5.23 0.00 0.00 2.90
1552 2660 8.823220 ATTAGGAAATAAACAGCAAGGTGTAT 57.177 30.769 5.23 0.00 0.00 2.29
1553 2661 6.515272 AGGAAATAAACAGCAAGGTGTATG 57.485 37.500 5.23 0.00 0.00 2.39
1566 2674 6.156256 AGCAAGGTGTATGGATACTAGTTTCA 59.844 38.462 14.25 5.51 34.41 2.69
1611 2719 2.160205 TCATCCGAAGAGACGACAAGT 58.840 47.619 0.00 0.00 35.09 3.16
1645 2753 1.282875 GGTTGCTGTCAAGTTCCGC 59.717 57.895 0.00 0.00 31.93 5.54
1648 2756 3.345808 GCTGTCAAGTTCCGCGCA 61.346 61.111 8.75 0.00 0.00 6.09
1672 2780 7.359595 CAAAACAATATTCTGAACTTCACCGA 58.640 34.615 0.00 0.00 0.00 4.69
1699 2807 3.499338 TGGTTTGCTTGAATCCAGACAT 58.501 40.909 0.00 0.00 30.99 3.06
1706 2814 8.677300 GTTTGCTTGAATCCAGACATTAGAATA 58.323 33.333 0.00 0.00 0.00 1.75
1707 2815 8.985315 TTGCTTGAATCCAGACATTAGAATAT 57.015 30.769 0.00 0.00 0.00 1.28
1770 2878 9.890629 TCTAGTGCATTCAGTTATGTTTCTAAT 57.109 29.630 0.00 0.00 0.00 1.73
1780 2891 9.595823 TCAGTTATGTTTCTAATTACTAGTGGC 57.404 33.333 5.39 0.00 0.00 5.01
1784 2895 7.849804 ATGTTTCTAATTACTAGTGGCAGTG 57.150 36.000 5.39 0.00 0.00 3.66
1792 2903 6.852420 ATTACTAGTGGCAGTGTTCTTCTA 57.148 37.500 5.39 0.00 0.00 2.10
1796 2907 3.733337 AGTGGCAGTGTTCTTCTACAAG 58.267 45.455 0.00 0.00 0.00 3.16
1802 2913 3.812053 CAGTGTTCTTCTACAAGCAAGCT 59.188 43.478 0.00 0.00 0.00 3.74
1815 2926 4.341235 ACAAGCAAGCTGAATGCATATGAT 59.659 37.500 6.97 0.00 46.22 2.45
1836 2947 2.739913 TGGGTTTTCTTTACTCATCGCG 59.260 45.455 0.00 0.00 0.00 5.87
1851 2962 2.401017 TCGCGTTATCAGGATCGAAG 57.599 50.000 5.77 0.00 0.00 3.79
1867 2978 8.013947 CAGGATCGAAGCATTAAGATACATTTG 58.986 37.037 0.00 0.00 31.04 2.32
1905 3016 7.124573 ACAGGCAGTACTAAATACATGATCA 57.875 36.000 0.00 0.00 36.09 2.92
1906 3017 7.212976 ACAGGCAGTACTAAATACATGATCAG 58.787 38.462 0.00 0.00 36.09 2.90
1908 3019 7.170489 CAGGCAGTACTAAATACATGATCAGTG 59.830 40.741 0.00 2.70 36.09 3.66
1917 3091 9.888878 CTAAATACATGATCAGTGCATTTTAGG 57.111 33.333 15.44 7.99 28.97 2.69
2238 3425 9.823647 TCAGAGGTAATCTTCTGCTTTTAATAG 57.176 33.333 3.11 0.00 44.17 1.73
2302 3489 1.004745 TCTTTCCCCCAACTGATGAGC 59.995 52.381 0.00 0.00 0.00 4.26
2412 3599 6.321181 TGCTTTTTCTGAGAATAACACCAACT 59.679 34.615 0.00 0.00 0.00 3.16
2413 3600 7.147915 TGCTTTTTCTGAGAATAACACCAACTT 60.148 33.333 0.00 0.00 0.00 2.66
2559 3746 4.584325 ACATGCAGTGACCTTATGTTTTGT 59.416 37.500 0.00 0.00 0.00 2.83
2574 3761 6.757897 ATGTTTTGTCTCAGTTTTGTCTGA 57.242 33.333 0.00 0.00 41.40 3.27
2609 3796 4.118168 ACCTGAACCAGAATCCATGTTT 57.882 40.909 0.00 0.00 32.44 2.83
2621 3808 8.306038 CCAGAATCCATGTTTTATGTTCAAAGA 58.694 33.333 0.00 0.00 0.00 2.52
2643 3830 8.503458 AAGATCACATGAAAATGGACTAGAAG 57.497 34.615 0.00 0.00 0.00 2.85
2661 3849 0.389426 AGCGCTTAACCGTCGATGTT 60.389 50.000 2.64 6.23 0.00 2.71
2665 3854 2.347452 CGCTTAACCGTCGATGTTTGAT 59.653 45.455 8.35 0.00 0.00 2.57
2675 3864 6.202188 ACCGTCGATGTTTGATTATCATAACC 59.798 38.462 3.52 3.87 0.00 2.85
2677 3866 7.042051 CCGTCGATGTTTGATTATCATAACCTT 60.042 37.037 3.52 5.72 0.00 3.50
2776 3965 3.360249 CTTCTGCTGAAGTTTTGGGTG 57.640 47.619 21.60 0.00 43.38 4.61
2785 3974 5.682943 TGAAGTTTTGGGTGAATAAGTCG 57.317 39.130 0.00 0.00 0.00 4.18
2796 3985 5.065602 GGGTGAATAAGTCGAAAATGGGTAC 59.934 44.000 0.00 0.00 0.00 3.34
2804 3993 3.566742 GTCGAAAATGGGTACTTGGTTGT 59.433 43.478 0.00 0.00 0.00 3.32
2819 4008 3.819368 TGGTTGTGGGTGCATCATATAG 58.181 45.455 0.00 0.00 0.00 1.31
2836 4025 5.661312 TCATATAGGCTGTCCAAAGTACACT 59.339 40.000 0.00 0.00 33.74 3.55
2879 4487 2.153366 AAAGGCACCGCATTTCAAAG 57.847 45.000 0.00 0.00 38.10 2.77
2900 4510 7.224362 TCAAAGTGCATTTCCACATAAAACAAG 59.776 33.333 0.00 0.00 38.18 3.16
2992 4605 2.935201 CAGTAGAAGCTGCATGAGGAAC 59.065 50.000 1.02 0.00 0.00 3.62
3096 4709 7.499895 AGACTGTCTATACAAGCTCTTACCTAC 59.500 40.741 8.91 0.00 34.49 3.18
3098 4711 7.499895 ACTGTCTATACAAGCTCTTACCTACTC 59.500 40.741 0.00 0.00 34.49 2.59
3099 4712 6.771749 TGTCTATACAAGCTCTTACCTACTCC 59.228 42.308 0.00 0.00 30.91 3.85
3100 4713 6.207221 GTCTATACAAGCTCTTACCTACTCCC 59.793 46.154 0.00 0.00 0.00 4.30
3101 4714 3.476485 ACAAGCTCTTACCTACTCCCT 57.524 47.619 0.00 0.00 0.00 4.20
3103 4716 3.011934 ACAAGCTCTTACCTACTCCCTCT 59.988 47.826 0.00 0.00 0.00 3.69
3104 4717 3.306472 AGCTCTTACCTACTCCCTCTG 57.694 52.381 0.00 0.00 0.00 3.35
3105 4718 2.583566 AGCTCTTACCTACTCCCTCTGT 59.416 50.000 0.00 0.00 0.00 3.41
3106 4719 2.953648 GCTCTTACCTACTCCCTCTGTC 59.046 54.545 0.00 0.00 0.00 3.51
3107 4720 3.558033 CTCTTACCTACTCCCTCTGTCC 58.442 54.545 0.00 0.00 0.00 4.02
3108 4721 2.244252 TCTTACCTACTCCCTCTGTCCC 59.756 54.545 0.00 0.00 0.00 4.46
3109 4722 1.690010 TACCTACTCCCTCTGTCCCA 58.310 55.000 0.00 0.00 0.00 4.37
3110 4723 0.041386 ACCTACTCCCTCTGTCCCAC 59.959 60.000 0.00 0.00 0.00 4.61
3111 4724 0.041238 CCTACTCCCTCTGTCCCACA 59.959 60.000 0.00 0.00 0.00 4.17
3112 4725 1.552486 CCTACTCCCTCTGTCCCACAA 60.552 57.143 0.00 0.00 0.00 3.33
3113 4726 2.472029 CTACTCCCTCTGTCCCACAAT 58.528 52.381 0.00 0.00 0.00 2.71
3114 4727 0.987294 ACTCCCTCTGTCCCACAATG 59.013 55.000 0.00 0.00 0.00 2.82
3115 4728 0.987294 CTCCCTCTGTCCCACAATGT 59.013 55.000 0.00 0.00 0.00 2.71
3116 4729 2.187958 CTCCCTCTGTCCCACAATGTA 58.812 52.381 0.00 0.00 0.00 2.29
3117 4730 2.571653 CTCCCTCTGTCCCACAATGTAA 59.428 50.000 0.00 0.00 0.00 2.41
3118 4731 2.571653 TCCCTCTGTCCCACAATGTAAG 59.428 50.000 0.00 0.00 0.00 2.34
3119 4732 2.571653 CCCTCTGTCCCACAATGTAAGA 59.428 50.000 0.00 0.00 0.00 2.10
3120 4733 3.200825 CCCTCTGTCCCACAATGTAAGAT 59.799 47.826 0.00 0.00 0.00 2.40
3121 4734 4.194640 CCTCTGTCCCACAATGTAAGATG 58.805 47.826 0.00 0.00 0.00 2.90
3122 4735 4.323792 CCTCTGTCCCACAATGTAAGATGT 60.324 45.833 0.00 0.00 0.00 3.06
3123 4736 5.241403 TCTGTCCCACAATGTAAGATGTT 57.759 39.130 0.00 0.00 0.00 2.71
3124 4737 5.630121 TCTGTCCCACAATGTAAGATGTTT 58.370 37.500 0.00 0.00 0.00 2.83
3125 4738 6.068010 TCTGTCCCACAATGTAAGATGTTTT 58.932 36.000 0.00 0.00 0.00 2.43
3126 4739 6.549364 TCTGTCCCACAATGTAAGATGTTTTT 59.451 34.615 0.00 0.00 0.00 1.94
3127 4740 6.511416 TGTCCCACAATGTAAGATGTTTTTG 58.489 36.000 0.00 0.00 0.00 2.44
3128 4741 5.405269 GTCCCACAATGTAAGATGTTTTTGC 59.595 40.000 0.00 0.00 0.00 3.68
3129 4742 5.069648 TCCCACAATGTAAGATGTTTTTGCA 59.930 36.000 0.00 0.00 0.00 4.08
3130 4743 5.757320 CCCACAATGTAAGATGTTTTTGCAA 59.243 36.000 0.00 0.00 0.00 4.08
3131 4744 6.073657 CCCACAATGTAAGATGTTTTTGCAAG 60.074 38.462 0.00 0.00 0.00 4.01
3132 4745 6.357198 CACAATGTAAGATGTTTTTGCAAGC 58.643 36.000 0.00 0.00 0.00 4.01
3133 4746 6.201425 CACAATGTAAGATGTTTTTGCAAGCT 59.799 34.615 0.00 0.00 0.00 3.74
3134 4747 7.381948 CACAATGTAAGATGTTTTTGCAAGCTA 59.618 33.333 0.00 0.00 0.00 3.32
3135 4748 8.090214 ACAATGTAAGATGTTTTTGCAAGCTAT 58.910 29.630 0.00 0.00 0.00 2.97
3136 4749 8.377681 CAATGTAAGATGTTTTTGCAAGCTATG 58.622 33.333 0.00 0.00 0.00 2.23
3137 4750 6.980593 TGTAAGATGTTTTTGCAAGCTATGT 58.019 32.000 0.00 0.00 0.00 2.29
3138 4751 7.432869 TGTAAGATGTTTTTGCAAGCTATGTT 58.567 30.769 0.00 1.58 0.00 2.71
3139 4752 8.572185 TGTAAGATGTTTTTGCAAGCTATGTTA 58.428 29.630 0.00 0.68 0.00 2.41
3140 4753 9.065871 GTAAGATGTTTTTGCAAGCTATGTTAG 57.934 33.333 0.00 0.00 0.00 2.34
3141 4754 6.624423 AGATGTTTTTGCAAGCTATGTTAGG 58.376 36.000 0.00 0.00 0.00 2.69
3142 4755 5.132897 TGTTTTTGCAAGCTATGTTAGGG 57.867 39.130 0.00 0.00 0.00 3.53
3143 4756 4.830046 TGTTTTTGCAAGCTATGTTAGGGA 59.170 37.500 0.00 0.00 0.00 4.20
3144 4757 5.048083 TGTTTTTGCAAGCTATGTTAGGGAG 60.048 40.000 0.00 0.00 0.00 4.30
3145 4758 2.332063 TGCAAGCTATGTTAGGGAGC 57.668 50.000 0.00 0.00 36.42 4.70
3146 4759 1.559219 TGCAAGCTATGTTAGGGAGCA 59.441 47.619 0.00 0.00 38.73 4.26
3147 4760 2.173356 TGCAAGCTATGTTAGGGAGCAT 59.827 45.455 0.00 0.00 38.73 3.79
3148 4761 2.810852 GCAAGCTATGTTAGGGAGCATC 59.189 50.000 0.00 0.00 38.73 3.91
3149 4762 3.495806 GCAAGCTATGTTAGGGAGCATCT 60.496 47.826 0.00 0.00 38.73 2.90
3150 4763 4.712476 CAAGCTATGTTAGGGAGCATCTT 58.288 43.478 0.00 0.00 38.73 2.40
3151 4764 5.128919 CAAGCTATGTTAGGGAGCATCTTT 58.871 41.667 0.00 0.00 38.73 2.52
3152 4765 4.712476 AGCTATGTTAGGGAGCATCTTTG 58.288 43.478 0.00 0.00 38.73 2.77
3153 4766 4.410228 AGCTATGTTAGGGAGCATCTTTGA 59.590 41.667 0.00 0.00 38.73 2.69
3154 4767 5.072872 AGCTATGTTAGGGAGCATCTTTGAT 59.927 40.000 0.00 0.00 38.73 2.57
3155 4768 5.767168 GCTATGTTAGGGAGCATCTTTGATT 59.233 40.000 0.00 0.00 36.20 2.57
3156 4769 6.293845 GCTATGTTAGGGAGCATCTTTGATTG 60.294 42.308 0.00 0.00 36.20 2.67
3157 4770 4.922206 TGTTAGGGAGCATCTTTGATTGT 58.078 39.130 0.00 0.00 33.73 2.71
3158 4771 4.701651 TGTTAGGGAGCATCTTTGATTGTG 59.298 41.667 0.00 0.00 33.73 3.33
3159 4772 2.731572 AGGGAGCATCTTTGATTGTGG 58.268 47.619 0.00 0.00 33.73 4.17
3160 4773 1.753073 GGGAGCATCTTTGATTGTGGG 59.247 52.381 0.00 0.00 33.73 4.61
3161 4774 2.621407 GGGAGCATCTTTGATTGTGGGA 60.621 50.000 0.00 0.00 33.73 4.37
3162 4775 2.424956 GGAGCATCTTTGATTGTGGGAC 59.575 50.000 0.00 0.00 33.73 4.46
3163 4776 2.086869 AGCATCTTTGATTGTGGGACG 58.913 47.619 0.00 0.00 0.00 4.79
3164 4777 2.083774 GCATCTTTGATTGTGGGACGA 58.916 47.619 0.00 0.00 0.00 4.20
3165 4778 2.487762 GCATCTTTGATTGTGGGACGAA 59.512 45.455 0.00 0.00 0.00 3.85
3166 4779 3.426695 GCATCTTTGATTGTGGGACGAAG 60.427 47.826 0.00 0.00 0.00 3.79
3167 4780 2.778299 TCTTTGATTGTGGGACGAAGG 58.222 47.619 0.00 0.00 0.00 3.46
3168 4781 1.812571 CTTTGATTGTGGGACGAAGGG 59.187 52.381 0.00 0.00 0.00 3.95
3169 4782 1.060729 TTGATTGTGGGACGAAGGGA 58.939 50.000 0.00 0.00 0.00 4.20
3170 4783 0.613260 TGATTGTGGGACGAAGGGAG 59.387 55.000 0.00 0.00 0.00 4.30
3171 4784 0.613777 GATTGTGGGACGAAGGGAGT 59.386 55.000 0.00 0.00 0.00 3.85
3172 4785 1.829222 GATTGTGGGACGAAGGGAGTA 59.171 52.381 0.00 0.00 0.00 2.59
3173 4786 1.263356 TTGTGGGACGAAGGGAGTAG 58.737 55.000 0.00 0.00 0.00 2.57
3174 4787 0.113776 TGTGGGACGAAGGGAGTAGT 59.886 55.000 0.00 0.00 0.00 2.73
3175 4788 1.355381 TGTGGGACGAAGGGAGTAGTA 59.645 52.381 0.00 0.00 0.00 1.82
3176 4789 1.747924 GTGGGACGAAGGGAGTAGTAC 59.252 57.143 0.00 0.00 0.00 2.73
3177 4790 1.355381 TGGGACGAAGGGAGTAGTACA 59.645 52.381 2.52 0.00 0.00 2.90
3178 4791 2.024655 TGGGACGAAGGGAGTAGTACAT 60.025 50.000 2.52 0.00 0.00 2.29
3179 4792 3.202818 TGGGACGAAGGGAGTAGTACATA 59.797 47.826 2.52 0.00 0.00 2.29
3180 4793 4.210331 GGGACGAAGGGAGTAGTACATAA 58.790 47.826 2.52 0.00 0.00 1.90
3181 4794 4.831710 GGGACGAAGGGAGTAGTACATAAT 59.168 45.833 2.52 0.00 0.00 1.28
3182 4795 5.303845 GGGACGAAGGGAGTAGTACATAATT 59.696 44.000 2.52 0.00 0.00 1.40
3183 4796 6.445475 GGACGAAGGGAGTAGTACATAATTC 58.555 44.000 2.52 1.38 0.00 2.17
3184 4797 6.402456 ACGAAGGGAGTAGTACATAATTCC 57.598 41.667 2.52 0.04 0.00 3.01
3185 4798 6.134754 ACGAAGGGAGTAGTACATAATTCCT 58.865 40.000 2.52 0.00 39.25 3.36
3187 4800 6.924060 CGAAGGGAGTAGTACATAATTCCTTG 59.076 42.308 13.65 6.24 45.61 3.61
3188 4801 7.417570 CGAAGGGAGTAGTACATAATTCCTTGT 60.418 40.741 13.65 0.00 45.61 3.16
3189 4802 7.125792 AGGGAGTAGTACATAATTCCTTGTG 57.874 40.000 2.52 0.00 33.38 3.33
3190 4803 6.099845 AGGGAGTAGTACATAATTCCTTGTGG 59.900 42.308 2.52 0.00 33.38 4.17
3191 4804 6.289064 GGAGTAGTACATAATTCCTTGTGGG 58.711 44.000 2.52 0.00 0.00 4.61
3192 4805 6.099269 GGAGTAGTACATAATTCCTTGTGGGA 59.901 42.308 2.52 0.00 43.41 4.37
3193 4806 6.885922 AGTAGTACATAATTCCTTGTGGGAC 58.114 40.000 2.52 0.00 45.03 4.46
3194 4807 4.766375 AGTACATAATTCCTTGTGGGACG 58.234 43.478 0.00 0.00 45.03 4.79
3195 4808 2.999331 ACATAATTCCTTGTGGGACGG 58.001 47.619 0.00 0.00 45.03 4.79
3196 4809 2.574369 ACATAATTCCTTGTGGGACGGA 59.426 45.455 0.00 0.00 45.03 4.69
3197 4810 3.206150 CATAATTCCTTGTGGGACGGAG 58.794 50.000 0.00 0.00 45.03 4.63
3198 4811 0.328258 AATTCCTTGTGGGACGGAGG 59.672 55.000 0.00 0.00 45.03 4.30
3199 4812 1.562672 ATTCCTTGTGGGACGGAGGG 61.563 60.000 0.00 0.00 45.03 4.30
3200 4813 2.606519 CCTTGTGGGACGGAGGGA 60.607 66.667 0.00 0.00 37.23 4.20
3201 4814 2.660064 CCTTGTGGGACGGAGGGAG 61.660 68.421 0.00 0.00 37.23 4.30
3202 4815 1.913762 CTTGTGGGACGGAGGGAGT 60.914 63.158 0.00 0.00 0.00 3.85
3203 4816 0.613853 CTTGTGGGACGGAGGGAGTA 60.614 60.000 0.00 0.00 0.00 2.59
3204 4817 0.613853 TTGTGGGACGGAGGGAGTAG 60.614 60.000 0.00 0.00 0.00 2.57
3205 4818 1.000107 GTGGGACGGAGGGAGTAGT 60.000 63.158 0.00 0.00 0.00 2.73
3206 4819 0.257039 GTGGGACGGAGGGAGTAGTA 59.743 60.000 0.00 0.00 0.00 1.82
3207 4820 0.257039 TGGGACGGAGGGAGTAGTAC 59.743 60.000 0.00 0.00 0.00 2.73
3208 4821 0.257039 GGGACGGAGGGAGTAGTACA 59.743 60.000 2.52 0.00 0.00 2.90
3209 4822 1.133544 GGGACGGAGGGAGTAGTACAT 60.134 57.143 2.52 0.00 0.00 2.29
3217 4830 5.106237 CGGAGGGAGTAGTACATATTAGTGC 60.106 48.000 2.52 0.00 0.00 4.40
3310 4923 5.533528 TGCTAAAAGACTACCTTTGTTTCCC 59.466 40.000 0.00 0.00 43.90 3.97
3363 4976 5.012768 AGCAGCTTTAGGTAACCAAGTTAGA 59.987 40.000 0.00 0.00 31.38 2.10
3380 4993 2.254152 AGAGCCTGGATGGTTAGTGA 57.746 50.000 0.00 0.00 38.35 3.41
3381 4994 1.834263 AGAGCCTGGATGGTTAGTGAC 59.166 52.381 0.00 0.00 38.35 3.67
3414 5029 4.837896 GCCCTTTGCTTATACAAGGATC 57.162 45.455 0.00 0.00 36.87 3.36
3416 5031 4.276926 GCCCTTTGCTTATACAAGGATCAG 59.723 45.833 0.00 0.00 36.87 2.90
3612 5228 4.858850 TCCAGTCATTATCCTTGTGCATT 58.141 39.130 0.00 0.00 0.00 3.56
3698 5314 4.970662 ATTTCCGGACAATGAGTTCATG 57.029 40.909 1.83 0.00 36.56 3.07
3728 5345 6.644248 AACTATTGTTTTTACCACTGTCCC 57.356 37.500 0.00 0.00 31.37 4.46
3821 5438 2.567169 TGTTCCTCATTGGATCTGTCGT 59.433 45.455 0.00 0.00 45.68 4.34
3949 5568 6.656314 TTTTTCGCCTTTTCTTTTTCCTTC 57.344 33.333 0.00 0.00 0.00 3.46
4011 5630 1.913419 AGAAACGGAATGGCTCCCTTA 59.087 47.619 0.00 0.00 41.87 2.69
4051 5671 2.352503 AAAAAGGCGCTATTGCTGTG 57.647 45.000 7.64 0.00 36.97 3.66
4068 5688 1.064758 TGTGTCTGCTTCCCTGTTGTT 60.065 47.619 0.00 0.00 0.00 2.83
4069 5689 1.604278 GTGTCTGCTTCCCTGTTGTTC 59.396 52.381 0.00 0.00 0.00 3.18
4070 5690 1.490490 TGTCTGCTTCCCTGTTGTTCT 59.510 47.619 0.00 0.00 0.00 3.01
4071 5691 1.876156 GTCTGCTTCCCTGTTGTTCTG 59.124 52.381 0.00 0.00 0.00 3.02
4072 5692 1.768275 TCTGCTTCCCTGTTGTTCTGA 59.232 47.619 0.00 0.00 0.00 3.27
4073 5693 2.172505 TCTGCTTCCCTGTTGTTCTGAA 59.827 45.455 0.00 0.00 0.00 3.02
4074 5694 2.551459 CTGCTTCCCTGTTGTTCTGAAG 59.449 50.000 0.00 0.00 36.40 3.02
4084 5704 5.009010 CCTGTTGTTCTGAAGTTGCAGTTAT 59.991 40.000 0.00 0.00 37.20 1.89
4086 5706 5.822519 TGTTGTTCTGAAGTTGCAGTTATCT 59.177 36.000 0.00 0.00 37.20 1.98
4115 5735 2.201732 TGATTTCCAAGCGCGAGTATC 58.798 47.619 12.10 2.61 0.00 2.24
4196 5837 7.775053 ATTTTGTTTAGATATGTGGTGTGGT 57.225 32.000 0.00 0.00 0.00 4.16
4199 5840 8.871629 TTTGTTTAGATATGTGGTGTGGTTAT 57.128 30.769 0.00 0.00 0.00 1.89
4234 5875 8.454106 GTGGAATGTACATGATGGCTATAATTC 58.546 37.037 9.63 0.00 0.00 2.17
4238 5909 6.711277 TGTACATGATGGCTATAATTCCCTC 58.289 40.000 0.00 0.00 0.00 4.30
4239 5910 5.184892 ACATGATGGCTATAATTCCCTCC 57.815 43.478 0.00 0.00 0.00 4.30
4322 5994 6.539173 TCAAATGTACCCTTGTGAACAGTAT 58.461 36.000 0.00 0.00 0.00 2.12
4325 5997 8.956426 CAAATGTACCCTTGTGAACAGTATAAT 58.044 33.333 0.00 0.00 0.00 1.28
4326 5998 8.732746 AATGTACCCTTGTGAACAGTATAATC 57.267 34.615 0.00 0.00 0.00 1.75
4327 5999 7.247456 TGTACCCTTGTGAACAGTATAATCA 57.753 36.000 0.00 0.00 0.00 2.57
4328 6000 7.101054 TGTACCCTTGTGAACAGTATAATCAC 58.899 38.462 0.00 0.00 42.90 3.06
4329 6001 5.175859 ACCCTTGTGAACAGTATAATCACG 58.824 41.667 0.00 0.00 44.95 4.35
4330 6002 5.046878 ACCCTTGTGAACAGTATAATCACGA 60.047 40.000 0.00 0.00 44.95 4.35
4331 6003 5.872617 CCCTTGTGAACAGTATAATCACGAA 59.127 40.000 0.00 0.00 44.95 3.85
4332 6004 6.370442 CCCTTGTGAACAGTATAATCACGAAA 59.630 38.462 0.00 0.00 44.95 3.46
4333 6005 7.094975 CCCTTGTGAACAGTATAATCACGAAAA 60.095 37.037 0.00 0.00 44.95 2.29
4334 6006 8.286800 CCTTGTGAACAGTATAATCACGAAAAA 58.713 33.333 0.00 0.00 44.95 1.94
4400 6072 7.853437 TGTTGTTGAATTTTCTACATACGTGTG 59.147 33.333 11.09 11.09 41.25 3.82
4417 6089 6.626199 ACGTGTGAATTTGTTGAAGAAAAC 57.374 33.333 0.00 0.00 0.00 2.43
4418 6090 6.386654 ACGTGTGAATTTGTTGAAGAAAACT 58.613 32.000 0.00 0.00 0.00 2.66
4419 6091 7.531716 ACGTGTGAATTTGTTGAAGAAAACTA 58.468 30.769 0.00 0.00 0.00 2.24
4420 6092 8.188139 ACGTGTGAATTTGTTGAAGAAAACTAT 58.812 29.630 0.00 0.00 0.00 2.12
4425 6097 9.232082 TGAATTTGTTGAAGAAAACTATTCACG 57.768 29.630 0.00 0.00 37.15 4.35
4461 6147 4.093408 CGATGCTCCGAAAAGATTTTCTGA 59.907 41.667 14.31 12.31 43.27 3.27
4630 6320 6.875948 TTTTAGTGTTCATAGCAGAAGCAA 57.124 33.333 0.00 0.00 45.49 3.91
4707 6409 8.908786 TTCACAATATATTTTTGGGCAAAACA 57.091 26.923 0.00 0.00 39.70 2.83
4735 6438 2.509561 GAGCCGAGCCGAAACTCC 60.510 66.667 0.00 0.00 32.79 3.85
4747 6450 0.030235 GAAACTCCGCGTGGCTTTTT 59.970 50.000 11.05 9.00 34.14 1.94
4748 6451 1.264826 GAAACTCCGCGTGGCTTTTTA 59.735 47.619 11.05 0.00 34.14 1.52
4750 6453 0.953960 ACTCCGCGTGGCTTTTTAGG 60.954 55.000 11.05 0.00 34.14 2.69
4812 6522 1.072015 CAAAATCAAGCCCAAGCCCAA 59.928 47.619 0.00 0.00 41.25 4.12
4819 6529 2.526375 CCCAAGCCCAAGCCCAAA 60.526 61.111 0.00 0.00 41.25 3.28
4820 6530 2.586293 CCCAAGCCCAAGCCCAAAG 61.586 63.158 0.00 0.00 41.25 2.77
4825 6535 2.526375 CCCAAGCCCAAAGCCCAA 60.526 61.111 0.00 0.00 45.47 4.12
4826 6536 1.919816 CCCAAGCCCAAAGCCCAAT 60.920 57.895 0.00 0.00 45.47 3.16
4827 6537 0.617249 CCCAAGCCCAAAGCCCAATA 60.617 55.000 0.00 0.00 45.47 1.90
4828 6538 0.536724 CCAAGCCCAAAGCCCAATAC 59.463 55.000 0.00 0.00 45.47 1.89
4829 6539 0.536724 CAAGCCCAAAGCCCAATACC 59.463 55.000 0.00 0.00 45.47 2.73
4830 6540 0.970427 AAGCCCAAAGCCCAATACCG 60.970 55.000 0.00 0.00 45.47 4.02
4831 6541 2.423064 GCCCAAAGCCCAATACCGG 61.423 63.158 0.00 0.00 34.35 5.28
4832 6542 1.304952 CCCAAAGCCCAATACCGGA 59.695 57.895 9.46 0.00 0.00 5.14
4833 6543 0.751643 CCCAAAGCCCAATACCGGAG 60.752 60.000 9.46 0.00 0.00 4.63
4834 6544 1.384222 CCAAAGCCCAATACCGGAGC 61.384 60.000 9.46 0.31 0.00 4.70
4863 6573 0.249073 CAGCCACCTTATCGTCTCCG 60.249 60.000 0.00 0.00 0.00 4.63
4864 6574 1.591863 GCCACCTTATCGTCTCCGC 60.592 63.158 0.00 0.00 0.00 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
131 133 1.276705 TGCCATGGTTAGTCGCAACTA 59.723 47.619 14.67 0.00 36.92 2.24
137 139 2.905075 TCTGAATGCCATGGTTAGTCG 58.095 47.619 14.67 8.40 0.00 4.18
257 259 9.387123 GATTTGATCAAAAGAGTTGAACAGTAC 57.613 33.333 23.91 0.00 33.75 2.73
260 263 7.428020 TGGATTTGATCAAAAGAGTTGAACAG 58.572 34.615 23.91 0.00 33.75 3.16
265 268 9.362539 CCTAAATGGATTTGATCAAAAGAGTTG 57.637 33.333 23.91 10.54 38.35 3.16
312 315 5.105635 CCACCAGTATTGTTCTTGCAATGAT 60.106 40.000 0.00 0.00 39.20 2.45
373 376 6.365970 AGATTAGTGCCTAATGGTATCCAG 57.634 41.667 10.91 0.00 36.87 3.86
410 413 9.413048 CTATTTAAGAATGGGTCGAGATTAGTC 57.587 37.037 0.00 0.00 0.00 2.59
421 424 7.402054 TGTGATGACACTATTTAAGAATGGGT 58.598 34.615 0.00 0.00 46.07 4.51
422 425 7.012704 CCTGTGATGACACTATTTAAGAATGGG 59.987 40.741 0.00 0.00 46.07 4.00
425 428 7.770897 GTCCCTGTGATGACACTATTTAAGAAT 59.229 37.037 0.00 0.00 46.07 2.40
445 448 5.415701 GGCATATATGGTATGTTTGTCCCTG 59.584 44.000 14.51 0.00 0.00 4.45
455 458 9.077885 ACTTGGTTAAAAGGCATATATGGTATG 57.922 33.333 14.51 0.00 0.00 2.39
459 462 6.183360 TGCACTTGGTTAAAAGGCATATATGG 60.183 38.462 14.51 0.00 32.19 2.74
466 469 5.244851 TGATAATGCACTTGGTTAAAAGGCA 59.755 36.000 0.00 0.00 37.58 4.75
500 503 7.723324 ACTTTACCTTAGACACGTATATGCAT 58.277 34.615 3.79 3.79 0.00 3.96
601 605 3.430651 GGAGGCTAGAGCATATGATCTGC 60.431 52.174 29.23 26.61 41.41 4.26
606 610 3.245407 TGCTAGGAGGCTAGAGCATATGA 60.245 47.826 6.97 0.00 44.36 2.15
609 613 2.980246 TGCTAGGAGGCTAGAGCATA 57.020 50.000 12.08 0.00 44.36 3.14
680 761 1.135046 CGGCTGAGATATCACTTGCG 58.865 55.000 5.32 2.13 0.00 4.85
734 1814 0.462789 GGTGTCCGTGGTAGGGTATG 59.537 60.000 0.00 0.00 0.00 2.39
778 1866 0.249398 CCTGGGTTTGACTCGGGTAG 59.751 60.000 0.00 0.00 40.36 3.18
801 1889 3.818121 TTCGCCGTCCTTGTGGTGG 62.818 63.158 0.00 0.00 36.41 4.61
802 1890 1.440938 TTTTCGCCGTCCTTGTGGTG 61.441 55.000 0.00 0.00 37.09 4.17
803 1891 0.748729 TTTTTCGCCGTCCTTGTGGT 60.749 50.000 0.00 0.00 34.23 4.16
843 1931 1.941812 CGTTGTGTTCTGTGCCCTC 59.058 57.895 0.00 0.00 0.00 4.30
844 1932 2.186826 GCGTTGTGTTCTGTGCCCT 61.187 57.895 0.00 0.00 0.00 5.19
845 1933 2.331451 GCGTTGTGTTCTGTGCCC 59.669 61.111 0.00 0.00 0.00 5.36
846 1934 1.298339 GTGCGTTGTGTTCTGTGCC 60.298 57.895 0.00 0.00 0.00 5.01
847 1935 1.651132 CGTGCGTTGTGTTCTGTGC 60.651 57.895 0.00 0.00 0.00 4.57
952 2040 2.823147 CTGCTAGTGCTGCTGGGC 60.823 66.667 0.00 1.04 40.48 5.36
1334 2441 3.124921 ATTCCGCGGCCACGAAAG 61.125 61.111 23.51 0.00 44.60 2.62
1344 2451 4.536364 ATGATTCAAACTACATTCCGCG 57.464 40.909 0.00 0.00 0.00 6.46
1364 2471 4.202030 GCCTCACTTCGCTTGTAGTAGTAT 60.202 45.833 0.00 0.00 0.00 2.12
1365 2472 3.128242 GCCTCACTTCGCTTGTAGTAGTA 59.872 47.826 0.00 0.00 0.00 1.82
1366 2473 2.094649 GCCTCACTTCGCTTGTAGTAGT 60.095 50.000 0.00 0.00 0.00 2.73
1367 2474 2.531206 GCCTCACTTCGCTTGTAGTAG 58.469 52.381 0.00 0.00 0.00 2.57
1403 2510 6.289901 CAATCGAAAACGAAACTCACTACTC 58.710 40.000 0.00 0.00 0.00 2.59
1404 2511 5.176958 CCAATCGAAAACGAAACTCACTACT 59.823 40.000 0.00 0.00 0.00 2.57
1405 2512 5.371629 CCAATCGAAAACGAAACTCACTAC 58.628 41.667 0.00 0.00 0.00 2.73
1406 2513 4.449743 CCCAATCGAAAACGAAACTCACTA 59.550 41.667 0.00 0.00 0.00 2.74
1407 2514 3.250040 CCCAATCGAAAACGAAACTCACT 59.750 43.478 0.00 0.00 0.00 3.41
1408 2515 3.249080 TCCCAATCGAAAACGAAACTCAC 59.751 43.478 0.00 0.00 0.00 3.51
1437 2544 2.428171 AGCTTACCTACCGCGACAAATA 59.572 45.455 8.23 0.00 0.00 1.40
1520 2628 7.517614 TGCTGTTTATTTCCTAATTGTGTCA 57.482 32.000 0.00 0.00 0.00 3.58
1523 2631 7.329226 CACCTTGCTGTTTATTTCCTAATTGTG 59.671 37.037 0.00 0.00 0.00 3.33
1551 2659 8.362464 TGTTCTACTGTGAAACTAGTATCCAT 57.638 34.615 0.00 0.00 38.04 3.41
1552 2660 7.668469 TCTGTTCTACTGTGAAACTAGTATCCA 59.332 37.037 0.00 0.00 38.04 3.41
1553 2661 8.053026 TCTGTTCTACTGTGAAACTAGTATCC 57.947 38.462 0.00 0.00 38.04 2.59
1566 2674 6.733509 ACTAGTATTCCCTCTGTTCTACTGT 58.266 40.000 0.00 0.00 0.00 3.55
1611 2719 5.774690 ACAGCAACCAGGAAAAGAATATTCA 59.225 36.000 17.56 0.00 0.00 2.57
1645 2753 6.088085 GGTGAAGTTCAGAATATTGTTTTGCG 59.912 38.462 5.62 0.00 0.00 4.85
1648 2756 7.504924 TCGGTGAAGTTCAGAATATTGTTTT 57.495 32.000 5.62 0.00 0.00 2.43
1672 2780 5.033589 TGGATTCAAGCAAACCAACAATT 57.966 34.783 0.00 0.00 0.00 2.32
1699 2807 3.195610 AGATCCATCGGCGCATATTCTAA 59.804 43.478 10.83 0.00 0.00 2.10
1706 2814 2.345244 GGAGATCCATCGGCGCAT 59.655 61.111 10.83 0.00 35.64 4.73
1707 2815 3.153781 TGGAGATCCATCGGCGCA 61.154 61.111 10.83 0.00 42.01 6.09
1730 2838 6.662865 ATGCACTAGAGTATGCTGATAAGT 57.337 37.500 0.00 0.00 42.55 2.24
1731 2839 7.150640 TGAATGCACTAGAGTATGCTGATAAG 58.849 38.462 0.00 0.00 42.55 1.73
1733 2841 6.266330 ACTGAATGCACTAGAGTATGCTGATA 59.734 38.462 9.34 0.00 42.55 2.15
1734 2842 5.070180 ACTGAATGCACTAGAGTATGCTGAT 59.930 40.000 9.34 0.00 42.55 2.90
1738 2846 6.703607 ACATAACTGAATGCACTAGAGTATGC 59.296 38.462 0.00 0.00 42.40 3.14
1770 2878 5.537295 TGTAGAAGAACACTGCCACTAGTAA 59.463 40.000 0.00 0.00 0.00 2.24
1776 2884 2.224314 GCTTGTAGAAGAACACTGCCAC 59.776 50.000 3.33 0.00 0.00 5.01
1780 2891 3.812053 AGCTTGCTTGTAGAAGAACACTG 59.188 43.478 3.33 0.00 0.00 3.66
1784 2895 5.388944 CATTCAGCTTGCTTGTAGAAGAAC 58.611 41.667 3.33 0.00 0.00 3.01
1792 2903 3.697542 TCATATGCATTCAGCTTGCTTGT 59.302 39.130 3.54 0.00 45.94 3.16
1796 2907 3.575630 CCATCATATGCATTCAGCTTGC 58.424 45.455 3.54 1.77 45.94 4.01
1802 2913 6.795144 AAGAAAACCCATCATATGCATTCA 57.205 33.333 3.54 0.00 0.00 2.57
1815 2926 2.739913 CGCGATGAGTAAAGAAAACCCA 59.260 45.455 0.00 0.00 0.00 4.51
1833 2944 0.778815 GCTTCGATCCTGATAACGCG 59.221 55.000 3.53 3.53 0.00 6.01
1836 2947 7.897575 ATCTTAATGCTTCGATCCTGATAAC 57.102 36.000 0.00 0.00 0.00 1.89
1905 3016 6.543831 GGAATGTCAGTATCCTAAAATGCACT 59.456 38.462 0.00 0.00 0.00 4.40
1906 3017 6.543831 AGGAATGTCAGTATCCTAAAATGCAC 59.456 38.462 0.00 0.00 41.74 4.57
1908 3019 7.573968 AAGGAATGTCAGTATCCTAAAATGC 57.426 36.000 5.34 0.00 42.72 3.56
1917 3091 7.913674 AGTTTCAGAAAGGAATGTCAGTATC 57.086 36.000 0.00 0.00 0.00 2.24
2073 3260 3.907474 CCCCTTTAATCACCCCAAAAAGT 59.093 43.478 0.00 0.00 0.00 2.66
2238 3425 4.093556 GTGGAGATACAGTAAGCAGTTTGC 59.906 45.833 0.00 0.00 45.46 3.68
2412 3599 7.930865 GCCATATTTATGAAAGTATTGGGCAAA 59.069 33.333 0.00 0.00 35.75 3.68
2413 3600 7.441017 GCCATATTTATGAAAGTATTGGGCAA 58.559 34.615 0.00 0.00 35.75 4.52
2536 3723 4.584325 ACAAAACATAAGGTCACTGCATGT 59.416 37.500 0.00 0.00 35.72 3.21
2547 3734 7.645340 CAGACAAAACTGAGACAAAACATAAGG 59.355 37.037 0.00 0.00 39.94 2.69
2553 3740 7.265693 GTTTCAGACAAAACTGAGACAAAAC 57.734 36.000 12.27 5.08 45.27 2.43
2581 3768 7.893302 ACATGGATTCTGGTTCAGGTTAATTAA 59.107 33.333 0.00 0.00 31.51 1.40
2582 3769 7.410174 ACATGGATTCTGGTTCAGGTTAATTA 58.590 34.615 0.00 0.00 31.51 1.40
2587 3774 3.814504 ACATGGATTCTGGTTCAGGTT 57.185 42.857 0.00 0.00 31.51 3.50
2609 3796 9.642327 CCATTTTCATGTGATCTTTGAACATAA 57.358 29.630 0.00 0.00 33.31 1.90
2621 3808 5.295292 CGCTTCTAGTCCATTTTCATGTGAT 59.705 40.000 0.00 0.00 0.00 3.06
2643 3830 0.441145 AAACATCGACGGTTAAGCGC 59.559 50.000 25.71 17.06 0.00 5.92
2759 3948 5.010012 ACTTATTCACCCAAAACTTCAGCAG 59.990 40.000 0.00 0.00 0.00 4.24
2776 3965 6.373495 ACCAAGTACCCATTTTCGACTTATTC 59.627 38.462 0.00 0.00 0.00 1.75
2785 3974 3.006430 CCCACAACCAAGTACCCATTTTC 59.994 47.826 0.00 0.00 0.00 2.29
2796 3985 1.259609 ATGATGCACCCACAACCAAG 58.740 50.000 0.00 0.00 0.00 3.61
2804 3993 2.038952 GACAGCCTATATGATGCACCCA 59.961 50.000 0.00 0.00 0.00 4.51
2819 4008 1.202770 ACCAGTGTACTTTGGACAGCC 60.203 52.381 19.04 0.00 37.89 4.85
2879 4487 5.333263 GCACTTGTTTTATGTGGAAATGCAC 60.333 40.000 0.00 0.00 35.57 4.57
2947 4560 1.464997 CTACGAAGCCAGCAAACTTCC 59.535 52.381 0.00 0.00 39.29 3.46
2985 4598 1.522668 CTTGTTGATGCCGTTCCTCA 58.477 50.000 0.00 0.00 0.00 3.86
2992 4605 0.673437 AAACCACCTTGTTGATGCCG 59.327 50.000 0.00 0.00 0.00 5.69
3096 4709 0.987294 ACATTGTGGGACAGAGGGAG 59.013 55.000 0.00 0.00 41.80 4.30
3098 4711 2.571653 TCTTACATTGTGGGACAGAGGG 59.428 50.000 0.00 0.00 41.80 4.30
3099 4712 3.981071 TCTTACATTGTGGGACAGAGG 57.019 47.619 0.00 0.00 41.80 3.69
3100 4713 4.836825 ACATCTTACATTGTGGGACAGAG 58.163 43.478 0.00 0.00 41.80 3.35
3101 4714 4.908601 ACATCTTACATTGTGGGACAGA 57.091 40.909 0.00 0.00 41.80 3.41
3103 4716 6.511416 CAAAAACATCTTACATTGTGGGACA 58.489 36.000 0.00 0.00 0.00 4.02
3104 4717 5.405269 GCAAAAACATCTTACATTGTGGGAC 59.595 40.000 0.00 0.00 0.00 4.46
3105 4718 5.069648 TGCAAAAACATCTTACATTGTGGGA 59.930 36.000 0.00 0.00 0.00 4.37
3106 4719 5.295950 TGCAAAAACATCTTACATTGTGGG 58.704 37.500 0.00 0.00 0.00 4.61
3107 4720 6.564499 GCTTGCAAAAACATCTTACATTGTGG 60.564 38.462 0.00 0.00 0.00 4.17
3108 4721 6.201425 AGCTTGCAAAAACATCTTACATTGTG 59.799 34.615 0.00 0.00 0.00 3.33
3109 4722 6.282930 AGCTTGCAAAAACATCTTACATTGT 58.717 32.000 0.00 0.00 0.00 2.71
3110 4723 6.774354 AGCTTGCAAAAACATCTTACATTG 57.226 33.333 0.00 0.00 0.00 2.82
3111 4724 8.090214 ACATAGCTTGCAAAAACATCTTACATT 58.910 29.630 0.00 0.00 0.00 2.71
3112 4725 7.605449 ACATAGCTTGCAAAAACATCTTACAT 58.395 30.769 0.00 0.00 0.00 2.29
3113 4726 6.980593 ACATAGCTTGCAAAAACATCTTACA 58.019 32.000 0.00 0.00 0.00 2.41
3114 4727 7.873739 AACATAGCTTGCAAAAACATCTTAC 57.126 32.000 0.00 0.00 0.00 2.34
3115 4728 8.243426 CCTAACATAGCTTGCAAAAACATCTTA 58.757 33.333 0.00 0.00 0.00 2.10
3116 4729 7.092716 CCTAACATAGCTTGCAAAAACATCTT 58.907 34.615 0.00 0.00 0.00 2.40
3117 4730 6.350445 CCCTAACATAGCTTGCAAAAACATCT 60.350 38.462 0.00 0.00 0.00 2.90
3118 4731 5.807011 CCCTAACATAGCTTGCAAAAACATC 59.193 40.000 0.00 0.00 0.00 3.06
3119 4732 5.480073 TCCCTAACATAGCTTGCAAAAACAT 59.520 36.000 0.00 0.00 0.00 2.71
3120 4733 4.830046 TCCCTAACATAGCTTGCAAAAACA 59.170 37.500 0.00 0.00 0.00 2.83
3121 4734 5.385509 TCCCTAACATAGCTTGCAAAAAC 57.614 39.130 0.00 0.00 0.00 2.43
3122 4735 4.082245 GCTCCCTAACATAGCTTGCAAAAA 60.082 41.667 0.00 0.00 33.40 1.94
3123 4736 3.443681 GCTCCCTAACATAGCTTGCAAAA 59.556 43.478 0.00 0.00 33.40 2.44
3124 4737 3.016736 GCTCCCTAACATAGCTTGCAAA 58.983 45.455 0.00 0.00 33.40 3.68
3125 4738 2.026356 TGCTCCCTAACATAGCTTGCAA 60.026 45.455 0.00 0.00 37.16 4.08
3126 4739 1.559219 TGCTCCCTAACATAGCTTGCA 59.441 47.619 0.00 0.00 37.16 4.08
3127 4740 2.332063 TGCTCCCTAACATAGCTTGC 57.668 50.000 0.00 0.00 37.16 4.01
3128 4741 4.348863 AGATGCTCCCTAACATAGCTTG 57.651 45.455 0.00 0.00 37.16 4.01
3129 4742 5.104360 TCAAAGATGCTCCCTAACATAGCTT 60.104 40.000 0.00 0.00 37.16 3.74
3130 4743 4.410228 TCAAAGATGCTCCCTAACATAGCT 59.590 41.667 0.00 0.00 37.16 3.32
3131 4744 4.708177 TCAAAGATGCTCCCTAACATAGC 58.292 43.478 0.00 0.00 36.77 2.97
3132 4745 6.769822 ACAATCAAAGATGCTCCCTAACATAG 59.230 38.462 0.00 0.00 0.00 2.23
3133 4746 6.543465 CACAATCAAAGATGCTCCCTAACATA 59.457 38.462 0.00 0.00 0.00 2.29
3134 4747 5.359009 CACAATCAAAGATGCTCCCTAACAT 59.641 40.000 0.00 0.00 0.00 2.71
3135 4748 4.701651 CACAATCAAAGATGCTCCCTAACA 59.298 41.667 0.00 0.00 0.00 2.41
3136 4749 4.096984 CCACAATCAAAGATGCTCCCTAAC 59.903 45.833 0.00 0.00 0.00 2.34
3137 4750 4.272489 CCACAATCAAAGATGCTCCCTAA 58.728 43.478 0.00 0.00 0.00 2.69
3138 4751 3.371917 CCCACAATCAAAGATGCTCCCTA 60.372 47.826 0.00 0.00 0.00 3.53
3139 4752 2.622452 CCCACAATCAAAGATGCTCCCT 60.622 50.000 0.00 0.00 0.00 4.20
3140 4753 1.753073 CCCACAATCAAAGATGCTCCC 59.247 52.381 0.00 0.00 0.00 4.30
3141 4754 2.424956 GTCCCACAATCAAAGATGCTCC 59.575 50.000 0.00 0.00 0.00 4.70
3142 4755 2.096496 CGTCCCACAATCAAAGATGCTC 59.904 50.000 0.00 0.00 0.00 4.26
3143 4756 2.086869 CGTCCCACAATCAAAGATGCT 58.913 47.619 0.00 0.00 0.00 3.79
3144 4757 2.083774 TCGTCCCACAATCAAAGATGC 58.916 47.619 0.00 0.00 0.00 3.91
3145 4758 3.127548 CCTTCGTCCCACAATCAAAGATG 59.872 47.826 0.00 0.00 0.00 2.90
3146 4759 3.347216 CCTTCGTCCCACAATCAAAGAT 58.653 45.455 0.00 0.00 0.00 2.40
3147 4760 2.552155 CCCTTCGTCCCACAATCAAAGA 60.552 50.000 0.00 0.00 0.00 2.52
3148 4761 1.812571 CCCTTCGTCCCACAATCAAAG 59.187 52.381 0.00 0.00 0.00 2.77
3149 4762 1.422024 TCCCTTCGTCCCACAATCAAA 59.578 47.619 0.00 0.00 0.00 2.69
3150 4763 1.003118 CTCCCTTCGTCCCACAATCAA 59.997 52.381 0.00 0.00 0.00 2.57
3151 4764 0.613260 CTCCCTTCGTCCCACAATCA 59.387 55.000 0.00 0.00 0.00 2.57
3152 4765 0.613777 ACTCCCTTCGTCCCACAATC 59.386 55.000 0.00 0.00 0.00 2.67
3153 4766 1.831736 CTACTCCCTTCGTCCCACAAT 59.168 52.381 0.00 0.00 0.00 2.71
3154 4767 1.263356 CTACTCCCTTCGTCCCACAA 58.737 55.000 0.00 0.00 0.00 3.33
3155 4768 0.113776 ACTACTCCCTTCGTCCCACA 59.886 55.000 0.00 0.00 0.00 4.17
3156 4769 1.747924 GTACTACTCCCTTCGTCCCAC 59.252 57.143 0.00 0.00 0.00 4.61
3157 4770 1.355381 TGTACTACTCCCTTCGTCCCA 59.645 52.381 0.00 0.00 0.00 4.37
3158 4771 2.134789 TGTACTACTCCCTTCGTCCC 57.865 55.000 0.00 0.00 0.00 4.46
3159 4772 6.402456 AATTATGTACTACTCCCTTCGTCC 57.598 41.667 0.00 0.00 0.00 4.79
3160 4773 6.264970 AGGAATTATGTACTACTCCCTTCGTC 59.735 42.308 0.00 0.00 0.00 4.20
3161 4774 6.134754 AGGAATTATGTACTACTCCCTTCGT 58.865 40.000 0.00 0.00 0.00 3.85
3162 4775 6.651975 AGGAATTATGTACTACTCCCTTCG 57.348 41.667 0.00 0.00 0.00 3.79
3163 4776 7.711339 CACAAGGAATTATGTACTACTCCCTTC 59.289 40.741 0.00 0.00 29.89 3.46
3164 4777 7.365652 CCACAAGGAATTATGTACTACTCCCTT 60.366 40.741 0.00 0.00 36.89 3.95
3165 4778 6.099845 CCACAAGGAATTATGTACTACTCCCT 59.900 42.308 0.00 0.00 36.89 4.20
3166 4779 6.289064 CCACAAGGAATTATGTACTACTCCC 58.711 44.000 0.00 0.00 36.89 4.30
3167 4780 6.099269 TCCCACAAGGAATTATGTACTACTCC 59.901 42.308 0.00 0.00 43.78 3.85
3168 4781 7.120923 TCCCACAAGGAATTATGTACTACTC 57.879 40.000 0.00 0.00 43.78 2.59
3182 4795 2.606519 CCCTCCGTCCCACAAGGA 60.607 66.667 0.00 0.00 44.91 3.36
3183 4796 2.606519 TCCCTCCGTCCCACAAGG 60.607 66.667 0.00 0.00 0.00 3.61
3184 4797 0.613853 TACTCCCTCCGTCCCACAAG 60.614 60.000 0.00 0.00 0.00 3.16
3185 4798 0.613853 CTACTCCCTCCGTCCCACAA 60.614 60.000 0.00 0.00 0.00 3.33
3186 4799 1.000019 CTACTCCCTCCGTCCCACA 60.000 63.158 0.00 0.00 0.00 4.17
3187 4800 0.257039 TACTACTCCCTCCGTCCCAC 59.743 60.000 0.00 0.00 0.00 4.61
3188 4801 0.257039 GTACTACTCCCTCCGTCCCA 59.743 60.000 0.00 0.00 0.00 4.37
3189 4802 0.257039 TGTACTACTCCCTCCGTCCC 59.743 60.000 0.00 0.00 0.00 4.46
3190 4803 2.361643 ATGTACTACTCCCTCCGTCC 57.638 55.000 0.00 0.00 0.00 4.79
3191 4804 6.149142 CACTAATATGTACTACTCCCTCCGTC 59.851 46.154 0.00 0.00 0.00 4.79
3192 4805 6.002704 CACTAATATGTACTACTCCCTCCGT 58.997 44.000 0.00 0.00 0.00 4.69
3193 4806 5.106237 GCACTAATATGTACTACTCCCTCCG 60.106 48.000 0.00 0.00 0.00 4.63
3194 4807 5.106237 CGCACTAATATGTACTACTCCCTCC 60.106 48.000 0.00 0.00 0.00 4.30
3195 4808 5.704515 TCGCACTAATATGTACTACTCCCTC 59.295 44.000 0.00 0.00 0.00 4.30
3196 4809 5.628130 TCGCACTAATATGTACTACTCCCT 58.372 41.667 0.00 0.00 0.00 4.20
3197 4810 5.472820 ACTCGCACTAATATGTACTACTCCC 59.527 44.000 0.00 0.00 0.00 4.30
3198 4811 6.204301 TGACTCGCACTAATATGTACTACTCC 59.796 42.308 0.00 0.00 0.00 3.85
3199 4812 7.171167 TCTGACTCGCACTAATATGTACTACTC 59.829 40.741 0.00 0.00 0.00 2.59
3200 4813 6.990939 TCTGACTCGCACTAATATGTACTACT 59.009 38.462 0.00 0.00 0.00 2.57
3201 4814 7.187244 TCTGACTCGCACTAATATGTACTAC 57.813 40.000 0.00 0.00 0.00 2.73
3202 4815 7.797038 TTCTGACTCGCACTAATATGTACTA 57.203 36.000 0.00 0.00 0.00 1.82
3203 4816 6.694877 TTCTGACTCGCACTAATATGTACT 57.305 37.500 0.00 0.00 0.00 2.73
3204 4817 7.139392 TGATTCTGACTCGCACTAATATGTAC 58.861 38.462 0.00 0.00 0.00 2.90
3205 4818 7.272037 TGATTCTGACTCGCACTAATATGTA 57.728 36.000 0.00 0.00 0.00 2.29
3206 4819 6.149129 TGATTCTGACTCGCACTAATATGT 57.851 37.500 0.00 0.00 0.00 2.29
3207 4820 7.508134 CATTGATTCTGACTCGCACTAATATG 58.492 38.462 0.00 0.00 0.00 1.78
3208 4821 6.146837 GCATTGATTCTGACTCGCACTAATAT 59.853 38.462 0.00 0.00 0.00 1.28
3209 4822 5.463392 GCATTGATTCTGACTCGCACTAATA 59.537 40.000 0.00 0.00 0.00 0.98
3217 4830 4.870221 TTCATGCATTGATTCTGACTCG 57.130 40.909 0.00 0.00 33.34 4.18
3295 4908 2.158519 CCTGGTGGGAAACAAAGGTAGT 60.159 50.000 0.00 0.00 37.23 2.73
3310 4923 1.073923 AGCTTAGGTGGTTTCCTGGTG 59.926 52.381 0.00 0.00 38.41 4.17
3343 4956 4.634883 GGCTCTAACTTGGTTACCTAAAGC 59.365 45.833 2.07 2.43 36.08 3.51
3380 4993 3.026694 GCAAAGGGCTATCAAAGATGGT 58.973 45.455 0.00 0.00 40.25 3.55
3381 4994 3.722728 GCAAAGGGCTATCAAAGATGG 57.277 47.619 0.00 0.00 40.25 3.51
3405 5020 1.273838 ACCTGAGGCCTGATCCTTGTA 60.274 52.381 12.00 0.00 36.38 2.41
3407 5022 0.622665 AACCTGAGGCCTGATCCTTG 59.377 55.000 12.00 0.00 36.38 3.61
3408 5023 1.005215 CAAACCTGAGGCCTGATCCTT 59.995 52.381 12.00 0.00 36.38 3.36
3409 5024 0.622665 CAAACCTGAGGCCTGATCCT 59.377 55.000 12.00 0.00 39.67 3.24
3410 5025 0.394899 CCAAACCTGAGGCCTGATCC 60.395 60.000 12.00 0.00 0.00 3.36
3411 5026 1.034292 GCCAAACCTGAGGCCTGATC 61.034 60.000 12.00 0.00 45.18 2.92
3412 5027 1.000396 GCCAAACCTGAGGCCTGAT 60.000 57.895 12.00 0.00 45.18 2.90
3413 5028 2.436109 GCCAAACCTGAGGCCTGA 59.564 61.111 12.00 0.00 45.18 3.86
3527 5143 2.467566 AAAAACTGGATACTCGCGGT 57.532 45.000 6.13 5.79 37.61 5.68
3612 5228 1.153309 CCGATGCACAGCCAGATCA 60.153 57.895 0.00 0.00 0.00 2.92
3698 5314 6.072119 AGTGGTAAAAACAATAGTTAGCAGGC 60.072 38.462 0.00 0.00 36.28 4.85
3821 5438 1.608336 AGGATGGTTGGGACGACGA 60.608 57.895 0.00 0.00 0.00 4.20
3877 5494 5.008331 TCGGGGACTGTATATGTAGATGTC 58.992 45.833 0.00 0.00 35.30 3.06
3878 5495 4.994282 TCGGGGACTGTATATGTAGATGT 58.006 43.478 0.00 0.00 35.30 3.06
4051 5671 1.876156 CAGAACAACAGGGAAGCAGAC 59.124 52.381 0.00 0.00 0.00 3.51
4068 5688 5.065914 AGCAAAGATAACTGCAACTTCAGA 58.934 37.500 0.00 0.00 41.17 3.27
4069 5689 5.368256 AGCAAAGATAACTGCAACTTCAG 57.632 39.130 0.00 0.00 41.17 3.02
4070 5690 6.881065 AGATAGCAAAGATAACTGCAACTTCA 59.119 34.615 0.00 0.00 41.17 3.02
4071 5691 7.065085 TCAGATAGCAAAGATAACTGCAACTTC 59.935 37.037 0.00 0.00 41.17 3.01
4072 5692 6.881065 TCAGATAGCAAAGATAACTGCAACTT 59.119 34.615 0.00 0.00 41.17 2.66
4073 5693 6.409704 TCAGATAGCAAAGATAACTGCAACT 58.590 36.000 0.00 0.00 41.17 3.16
4074 5694 6.668541 TCAGATAGCAAAGATAACTGCAAC 57.331 37.500 0.00 0.00 41.17 4.17
4084 5704 4.333649 CGCTTGGAAATCAGATAGCAAAGA 59.666 41.667 3.55 0.00 29.60 2.52
4086 5706 3.181497 GCGCTTGGAAATCAGATAGCAAA 60.181 43.478 0.00 0.00 29.60 3.68
4115 5735 3.879892 GGCTGCTAGTAGAAAATCCTTGG 59.120 47.826 12.54 0.00 0.00 3.61
4293 5964 2.749621 CACAAGGGTACATTTGAGCTCC 59.250 50.000 12.15 0.00 0.00 4.70
4374 6046 7.853437 CACACGTATGTAGAAAATTCAACAACA 59.147 33.333 0.00 0.00 36.72 3.33
4375 6047 8.065407 TCACACGTATGTAGAAAATTCAACAAC 58.935 33.333 0.00 0.00 36.72 3.32
4400 6072 9.445786 TCGTGAATAGTTTTCTTCAACAAATTC 57.554 29.630 0.00 0.00 34.73 2.17
4438 6124 5.390885 TTCAGAAAATCTTTTCGGAGCATCG 60.391 40.000 14.73 0.00 46.50 3.84
4474 6160 5.333721 CCGGGCAAAAATAACAAATCAACAC 60.334 40.000 0.00 0.00 0.00 3.32
4605 6295 6.845302 TGCTTCTGCTATGAACACTAAAATG 58.155 36.000 0.00 0.00 40.48 2.32
4675 6377 8.442384 GCCCAAAAATATATTGTGAAAGTGTTG 58.558 33.333 0.00 0.00 0.00 3.33
4687 6389 8.998377 GTGAAGTGTTTTGCCCAAAAATATATT 58.002 29.630 7.67 0.00 41.37 1.28
4692 6394 4.583871 TGTGAAGTGTTTTGCCCAAAAAT 58.416 34.783 7.67 0.00 41.37 1.82
4697 6399 3.196469 TCAATTGTGAAGTGTTTTGCCCA 59.804 39.130 5.13 0.00 0.00 5.36
4707 6409 1.160137 GCTCGGCTCAATTGTGAAGT 58.840 50.000 11.59 0.00 31.88 3.01
4754 6457 1.201647 GTGTCGCTGAGCCTACTACAA 59.798 52.381 0.00 0.00 0.00 2.41
4755 6458 0.809385 GTGTCGCTGAGCCTACTACA 59.191 55.000 0.00 0.00 0.00 2.74
4758 6461 0.528470 GAAGTGTCGCTGAGCCTACT 59.472 55.000 0.00 0.00 0.00 2.57
4812 6522 1.379843 CGGTATTGGGCTTTGGGCT 60.380 57.895 0.00 0.00 41.46 5.19
4819 6529 2.911143 CTGCTCCGGTATTGGGCT 59.089 61.111 0.00 0.00 0.00 5.19
4820 6530 2.902343 GCTGCTCCGGTATTGGGC 60.902 66.667 0.00 0.00 0.00 5.36
4823 6533 2.182842 GGCTGCTGCTCCGGTATTG 61.183 63.158 15.64 0.00 39.59 1.90
4824 6534 2.190578 GGCTGCTGCTCCGGTATT 59.809 61.111 15.64 0.00 39.59 1.89
4825 6535 2.765807 AGGCTGCTGCTCCGGTAT 60.766 61.111 15.64 0.00 39.59 2.73
4826 6536 3.461773 GAGGCTGCTGCTCCGGTA 61.462 66.667 15.64 0.00 39.59 4.02
4829 6539 4.834453 CTGGAGGCTGCTGCTCCG 62.834 72.222 15.64 11.62 38.48 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.