AutoCloner

Multiple sequence alignment - TraesCS4B01G041500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4B01G041500	chr4B	100.000	7534	0	0	1	7534	28622235	28614702	0.000000e+00	13913.0
1	TraesCS4B01G041500	chr4B	95.578	294	11	2	1362	1653	517495025	517495318	3.180000e-128	470.0
2	TraesCS4B01G041500	chr4B	89.655	87	7	2	7030	7114	43229075	43228989	7.990000e-20	110.0
3	TraesCS4B01G041500	chr4B	89.041	73	3	5	6965	7035	136028847	136028916	1.350000e-12	86.1
4	TraesCS4B01G041500	chr4B	88.571	70	4	4	6964	7032	242718773	242718839	1.740000e-11	82.4
5	TraesCS4B01G041500	chr4B	90.164	61	6	0	6307	6367	599352434	599352374	6.270000e-11	80.5
6	TraesCS4B01G041500	chr4B	85.714	77	8	3	6960	7036	452727410	452727337	2.250000e-10	78.7
7	TraesCS4B01G041500	chr4B	100.000	29	0	0	4261	4289	55721855	55721827	4.000000e-03	54.7
8	TraesCS4B01G041500	chr4B	96.970	33	0	1	7275	7307	324427401	324427432	4.000000e-03	54.7
9	TraesCS4B01G041500	chr4D	93.254	2016	91	17	4292	6305	16652455	16650483	0.000000e+00	2928.0
10	TraesCS4B01G041500	chr4D	92.901	1310	59	16	1	1291	16656500	16655206	0.000000e+00	1873.0
11	TraesCS4B01G041500	chr4D	89.355	1334	82	19	2975	4291	16653780	16652490	0.000000e+00	1622.0
12	TraesCS4B01G041500	chr4D	93.534	464	24	3	6367	6827	16650497	16650037	0.000000e+00	686.0
13	TraesCS4B01G041500	chr4D	80.039	1032	84	56	1908	2875	16654823	16653850	0.000000e+00	652.0
14	TraesCS4B01G041500	chr4D	88.298	282	24	5	1640	1915	16655152	16654874	5.640000e-86	329.0
15	TraesCS4B01G041500	chr4D	85.635	181	17	5	3601	3781	368008527	368008698	1.670000e-41	182.0
16	TraesCS4B01G041500	chr4D	84.615	182	25	2	7128	7307	1355920	1356100	2.160000e-40	178.0
17	TraesCS4B01G041500	chr4D	89.051	137	11	3	7307	7443	16649955	16649823	4.680000e-37	167.0
18	TraesCS4B01G041500	chr4D	82.873	181	29	2	7128	7307	151727269	151727090	2.180000e-35	161.0
19	TraesCS4B01G041500	chr4D	92.500	80	6	0	7030	7109	151727341	151727262	1.720000e-21	115.0
20	TraesCS4B01G041500	chr4D	88.750	80	9	0	7030	7109	43651652	43651573	1.730000e-16	99.0
21	TraesCS4B01G041500	chr4D	77.222	180	34	7	7131	7307	385733823	385733648	1.730000e-16	99.0
22	TraesCS4B01G041500	chr4D	90.411	73	6	1	7463	7534	54684776	54684704	2.240000e-15	95.3
23	TraesCS4B01G041500	chr4D	100.000	28	0	0	4263	4290	258882791	258882764	1.400000e-02	52.8
24	TraesCS4B01G041500	chr4A	92.454	2001	109	26	4312	6305	583908062	583910027	0.000000e+00	2820.0
25	TraesCS4B01G041500	chr4A	91.011	890	50	9	440	1328	583904814	583905674	0.000000e+00	1173.0
26	TraesCS4B01G041500	chr4A	90.698	731	47	7	6368	7078	583910014	583910743	0.000000e+00	953.0
27	TraesCS4B01G041500	chr4A	87.573	684	57	12	2975	3648	583906887	583907552	0.000000e+00	767.0
28	TraesCS4B01G041500	chr4A	91.573	534	26	7	3737	4265	583907545	583908064	0.000000e+00	719.0
29	TraesCS4B01G041500	chr4A	96.479	284	9	1	1362	1645	135617178	135617460	1.140000e-127	468.0
30	TraesCS4B01G041500	chr4A	92.105	266	18	2	1	266	583904398	583904660	9.230000e-99	372.0
31	TraesCS4B01G041500	chr4A	84.553	369	23	21	7126	7462	583910755	583911121	1.210000e-87	335.0
32	TraesCS4B01G041500	chr4A	81.020	353	31	17	1807	2140	583905827	583906162	1.620000e-61	248.0
33	TraesCS4B01G041500	chr4A	79.856	278	31	10	7030	7307	621272444	621272696	6.010000e-41	180.0
34	TraesCS4B01G041500	chr4A	86.127	173	14	5	3607	3779	469243058	469242896	2.160000e-40	178.0
35	TraesCS4B01G041500	chr4A	79.699	133	19	4	7129	7260	699581142	699581267	1.040000e-13	89.8
36	TraesCS4B01G041500	chr4A	87.179	78	7	2	2407	2481	583906351	583906428	1.350000e-12	86.1
37	TraesCS4B01G041500	chr4A	88.406	69	5	2	6307	6375	84906908	84906973	6.270000e-11	80.5
38	TraesCS4B01G041500	chr4A	100.000	29	0	0	2145	2173	583906153	583906181	4.000000e-03	54.7
39	TraesCS4B01G041500	chr6D	82.852	1038	124	38	337	1363	414559443	414560437	0.000000e+00	881.0
40	TraesCS4B01G041500	chr6D	81.845	336	40	18	316	640	414706327	414706002	5.800000e-66	263.0
41	TraesCS4B01G041500	chr6D	78.571	364	46	26	254	607	414744418	414744077	2.130000e-50	211.0
42	TraesCS4B01G041500	chr6D	86.047	172	20	2	3607	3778	460870906	460871073	1.670000e-41	182.0
43	TraesCS4B01G041500	chr6D	79.710	276	30	6	7030	7305	413046352	413046103	7.770000e-40	176.0
44	TraesCS4B01G041500	chr6D	84.831	178	19	5	3608	3784	6756627	6756797	1.010000e-38	172.0
45	TraesCS4B01G041500	chr6D	80.383	209	28	5	1640	1842	414560456	414560657	6.090000e-31	147.0
46	TraesCS4B01G041500	chr6D	85.950	121	13	3	139	258	414706537	414706420	7.940000e-25	126.0
47	TraesCS4B01G041500	chr6D	93.056	72	5	0	7463	7534	129482784	129482855	1.030000e-18	106.0
48	TraesCS4B01G041500	chr6D	94.737	57	2	1	6978	7033	28289889	28289945	3.740000e-13	87.9
49	TraesCS4B01G041500	chr6D	90.625	64	6	0	6961	7024	51782211	51782148	1.350000e-12	86.1
50	TraesCS4B01G041500	chr6D	95.652	46	2	0	7269	7314	327201319	327201274	2.920000e-09	75.0
51	TraesCS4B01G041500	chr6D	95.652	46	1	1	6992	7036	82637401	82637356	1.050000e-08	73.1
52	TraesCS4B01G041500	chr6D	86.957	69	3	6	6964	7030	109865759	109865695	1.050000e-08	73.1
53	TraesCS4B01G041500	chr6D	85.714	70	7	3	6960	7028	285150387	285150320	3.770000e-08	71.3
54	TraesCS4B01G041500	chr2B	98.208	279	5	0	1361	1639	216470128	216469850	8.790000e-134	488.0
55	TraesCS4B01G041500	chr2B	85.083	181	25	2	7128	7307	566618112	566617933	4.640000e-42	183.0
56	TraesCS4B01G041500	chr1B	97.203	286	7	1	1362	1647	565953452	565953736	4.090000e-132	483.0
57	TraesCS4B01G041500	chr1B	97.500	280	7	0	1361	1640	397661588	397661867	5.290000e-131	479.0
58	TraesCS4B01G041500	chr1B	77.778	270	36	9	7030	7299	447165831	447166076	2.190000e-30	145.0
59	TraesCS4B01G041500	chr1B	89.552	67	6	1	6300	6366	626303043	626302978	4.840000e-12	84.2
60	TraesCS4B01G041500	chr6B	97.834	277	6	0	1364	1640	280999784	280999508	5.290000e-131	479.0
61	TraesCS4B01G041500	chr6B	95.254	295	11	2	1361	1655	75528691	75528982	1.480000e-126	464.0
62	TraesCS4B01G041500	chr6B	81.564	179	31	2	7141	7319	37615860	37615684	6.090000e-31	147.0
63	TraesCS4B01G041500	chr6B	88.750	80	9	0	7455	7534	130702107	130702028	1.730000e-16	99.0
64	TraesCS4B01G041500	chr6B	89.041	73	8	0	7461	7533	501802216	501802144	2.900000e-14	91.6
65	TraesCS4B01G041500	chr6B	94.444	36	2	0	4256	4291	48938357	48938392	1.000000e-03	56.5
66	TraesCS4B01G041500	chr5B	96.516	287	8	1	1353	1639	668593634	668593918	2.460000e-129	473.0
67	TraesCS4B01G041500	chr5B	90.909	176	15	1	3607	3782	136413788	136413614	1.260000e-57	235.0
68	TraesCS4B01G041500	chr5B	88.608	79	4	5	6957	7031	533980073	533980150	2.900000e-14	91.6
69	TraesCS4B01G041500	chr7B	96.454	282	10	0	1360	1641	84566600	84566881	4.120000e-127	466.0
70	TraesCS4B01G041500	chr7B	84.536	194	21	5	3607	3800	437931994	437932178	4.640000e-42	183.0
71	TraesCS4B01G041500	chr7B	86.127	173	18	5	3610	3782	627725061	627724895	1.670000e-41	182.0
72	TraesCS4B01G041500	chr7B	81.119	143	26	1	7141	7283	494199030	494198889	6.180000e-21	113.0
73	TraesCS4B01G041500	chr7B	90.244	82	7	1	7454	7534	439500032	439499951	1.030000e-18	106.0
74	TraesCS4B01G041500	chr7B	87.654	81	7	3	6952	7031	700180749	700180671	2.900000e-14	91.6
75	TraesCS4B01G041500	chr1A	87.356	174	16	4	3593	3766	498451802	498451969	2.140000e-45	195.0
76	TraesCS4B01G041500	chr1A	74.653	288	46	8	7030	7316	363450809	363451070	1.340000e-17	102.0
77	TraesCS4B01G041500	chr1A	88.608	79	8	1	7455	7533	158939087	158939010	2.240000e-15	95.3
78	TraesCS4B01G041500	chr1A	89.552	67	7	0	7043	7109	288425761	288425695	1.350000e-12	86.1
79	TraesCS4B01G041500	chr1A	85.915	71	10	0	6957	7027	359235335	359235405	8.110000e-10	76.8
80	TraesCS4B01G041500	chr1A	91.228	57	4	1	6307	6363	448820582	448820527	8.110000e-10	76.8
81	TraesCS4B01G041500	chr1A	100.000	30	0	0	4262	4291	550212054	550212083	1.000000e-03	56.5
82	TraesCS4B01G041500	chr1A	100.000	29	0	0	4262	4290	398135345	398135373	4.000000e-03	54.7
83	TraesCS4B01G041500	chr5A	79.866	298	32	9	7030	7322	429122780	429122506	7.710000e-45	193.0
84	TraesCS4B01G041500	chr5A	85.965	171	20	2	3608	3778	140595612	140595778	6.010000e-41	180.0
85	TraesCS4B01G041500	chr5A	81.053	190	31	5	7126	7313	708685358	708685172	6.090000e-31	147.0
86	TraesCS4B01G041500	chr5A	80.108	186	33	4	7128	7311	588356835	588356652	1.320000e-27	135.0
87	TraesCS4B01G041500	chr3B	84.783	184	24	4	7126	7307	70982511	70982692	1.670000e-41	182.0
88	TraesCS4B01G041500	chr3B	89.231	65	6	1	6307	6371	581118624	581118561	6.270000e-11	80.5
89	TraesCS4B01G041500	chr3D	83.425	181	28	2	7128	7307	11792087	11792266	4.680000e-37	167.0
90	TraesCS4B01G041500	chr3D	81.771	192	28	6	7125	7311	588148004	588147815	3.640000e-33	154.0
91	TraesCS4B01G041500	chr3D	91.250	80	6	1	7030	7108	495344502	495344423	2.870000e-19	108.0
92	TraesCS4B01G041500	chr3D	90.667	75	7	0	7460	7534	525540271	525540345	4.810000e-17	100.0
93	TraesCS4B01G041500	chr3D	86.585	82	8	3	6958	7036	591200288	591200207	3.740000e-13	87.9
94	TraesCS4B01G041500	chr3D	87.342	79	5	5	6952	7027	582266024	582266100	1.350000e-12	86.1
95	TraesCS4B01G041500	chr3D	86.111	72	8	2	7463	7532	47782926	47782855	8.110000e-10	76.8
96	TraesCS4B01G041500	chr3D	83.750	80	11	2	6958	7035	68054796	68054875	2.920000e-09	75.0
97	TraesCS4B01G041500	chr3D	89.091	55	5	1	4255	4308	545225346	545225292	4.880000e-07	67.6
98	TraesCS4B01G041500	chr2A	79.137	278	31	10	7030	7307	757666100	757665850	4.680000e-37	167.0
99	TraesCS4B01G041500	chr2A	80.526	190	24	7	7128	7307	600519007	600518821	4.740000e-27	134.0
100	TraesCS4B01G041500	chr2A	95.000	80	4	0	7030	7109	186441662	186441741	7.940000e-25	126.0
101	TraesCS4B01G041500	chr2A	93.443	61	3	1	6307	6367	2110750	2110809	1.040000e-13	89.8
102	TraesCS4B01G041500	chr7D	78.417	278	34	9	7030	7307	120324634	120324383	2.810000e-34	158.0
103	TraesCS4B01G041500	chr7D	86.747	83	9	2	6957	7038	55648237	55648318	2.900000e-14	91.6
104	TraesCS4B01G041500	chr7D	86.842	76	9	1	6957	7031	27814855	27814780	4.840000e-12	84.2
105	TraesCS4B01G041500	chr7D	88.889	45	2	3	4264	4307	183318879	183318921	1.400000e-02	52.8
106	TraesCS4B01G041500	chr6A	78.058	278	37	7	7030	7307	866617	866870	3.640000e-33	154.0
107	TraesCS4B01G041500	chr6A	90.588	85	7	1	7030	7114	540274585	540274668	2.220000e-20	111.0
108	TraesCS4B01G041500	chr6A	88.235	85	9	1	7030	7114	19523515	19523432	4.810000e-17	100.0
109	TraesCS4B01G041500	chr6A	87.059	85	10	1	7030	7114	605042631	605042548	2.240000e-15	95.3
110	TraesCS4B01G041500	chr6A	88.158	76	8	1	6958	7033	53880034	53880108	1.040000e-13	89.8
111	TraesCS4B01G041500	chr6A	87.838	74	9	0	7461	7534	6739094	6739167	3.740000e-13	87.9
112	TraesCS4B01G041500	chr6A	93.103	58	3	1	6307	6364	582942345	582942401	4.840000e-12	84.2
113	TraesCS4B01G041500	chr6A	92.982	57	3	1	6309	6365	30206903	30206848	1.740000e-11	82.4
114	TraesCS4B01G041500	chr6A	88.235	68	4	4	6964	7031	528493274	528493337	2.250000e-10	78.7
115	TraesCS4B01G041500	chr6A	92.000	50	4	0	7464	7513	458541515	458541466	3.770000e-08	71.3
116	TraesCS4B01G041500	chr6A	100.000	32	0	0	4260	4291	563706144	563706113	8.160000e-05	60.2
117	TraesCS4B01G041500	chr1D	78.467	274	32	14	7030	7303	247824481	247824235	3.640000e-33	154.0
118	TraesCS4B01G041500	chr1D	90.411	73	6	1	7463	7534	466401717	466401645	2.240000e-15	95.3
119	TraesCS4B01G041500	chr1D	87.500	80	10	0	7030	7109	452597217	452597296	8.050000e-15	93.5
120	TraesCS4B01G041500	chr1D	88.889	72	8	0	7463	7534	4645569	4645498	1.040000e-13	89.8
121	TraesCS4B01G041500	chr1D	92.857	56	4	0	7045	7100	348342751	348342806	1.740000e-11	82.4
122	TraesCS4B01G041500	chr1D	86.667	75	3	5	6960	7032	435310206	435310275	8.110000e-10	76.8
123	TraesCS4B01G041500	chr1D	84.416	77	11	1	6956	7031	233088216	233088292	2.920000e-09	75.0
124	TraesCS4B01G041500	chr1D	100.000	32	0	0	4260	4291	40163182	40163151	8.160000e-05	60.2
125	TraesCS4B01G041500	chr1D	100.000	29	0	0	4263	4291	458432831	458432803	4.000000e-03	54.7
126	TraesCS4B01G041500	chr1D	100.000	28	0	0	4264	4291	391322537	391322510	1.400000e-02	52.8
127	TraesCS4B01G041500	chr2D	78.740	254	28	9	7030	7283	164391922	164391695	6.090000e-31	147.0
128	TraesCS4B01G041500	chr2D	89.888	89	5	1	7030	7114	5112741	5112829	2.220000e-20	111.0
129	TraesCS4B01G041500	chr2D	89.412	85	8	1	7030	7114	529693234	529693151	1.030000e-18	106.0
130	TraesCS4B01G041500	chr2D	88.000	75	9	0	6957	7031	577304408	577304482	1.040000e-13	89.8
131	TraesCS4B01G041500	chr2D	89.552	67	6	1	6309	6375	102957301	102957236	4.840000e-12	84.2
132	TraesCS4B01G041500	chr7A	81.595	163	29	1	7145	7307	699410786	699410625	4.740000e-27	134.0
133	TraesCS4B01G041500	chr7A	91.935	62	3	2	6307	6367	237751	237811	1.350000e-12	86.1
134	TraesCS4B01G041500	chr7A	94.444	36	2	0	4256	4291	86111608	86111573	1.000000e-03	56.5
135	TraesCS4B01G041500	chr7A	100.000	29	0	0	2694	2722	477187804	477187776	4.000000e-03	54.7
136	TraesCS4B01G041500	chr5D	89.041	73	8	0	6960	7032	125988950	125988878	2.900000e-14	91.6
137	TraesCS4B01G041500	chr5D	93.103	58	3	1	6309	6366	526246763	526246819	4.840000e-12	84.2
138	TraesCS4B01G041500	chrUn	91.935	62	4	1	6309	6370	62080759	62080699	1.350000e-12	86.1
139	TraesCS4B01G041500	chrUn	89.041	73	3	5	6957	7025	265024674	265024745	1.350000e-12	86.1
140	TraesCS4B01G041500	chrUn	87.342	79	5	5	6957	7031	287940385	287940308	1.350000e-12	86.1
141	TraesCS4B01G041500	chrUn	91.803	61	4	1	6307	6367	225044940	225044999	4.840000e-12	84.2
142	TraesCS4B01G041500	chrUn	91.803	61	4	1	6307	6367	288113353	288113412	4.840000e-12	84.2
143	TraesCS4B01G041500	chrUn	91.667	60	4	1	6309	6368	371160857	371160799	1.740000e-11	82.4
144	TraesCS4B01G041500	chrUn	91.379	58	4	1	6309	6366	47389376	47389320	2.250000e-10	78.7
145	TraesCS4B01G041500	chrUn	91.379	58	4	1	6309	6366	240786435	240786491	2.250000e-10	78.7
146	TraesCS4B01G041500	chrUn	91.379	58	4	1	6309	6366	370688619	370688675	2.250000e-10	78.7
147	TraesCS4B01G041500	chrUn	91.379	58	4	1	6309	6366	388891945	388891889	2.250000e-10	78.7
148	TraesCS4B01G041500	chrUn	100.000	41	0	0	6986	7026	46251201	46251241	8.110000e-10	76.8
149	TraesCS4B01G041500	chrUn	92.453	53	4	0	6314	6366	126748917	126748969	8.110000e-10	76.8
150	TraesCS4B01G041500	chrUn	85.915	71	10	0	6960	7030	344768781	344768711	8.110000e-10	76.8
151	TraesCS4B01G041500	chrUn	85.915	71	10	0	6960	7030	353008085	353008015	8.110000e-10	76.8
152	TraesCS4B01G041500	chrUn	91.071	56	3	2	6981	7035	47528243	47528189	2.920000e-09	75.0
153	TraesCS4B01G041500	chrUn	95.556	45	2	0	6992	7036	49127544	49127500	1.050000e-08	73.1
154	TraesCS4B01G041500	chrUn	95.556	45	2	0	6991	7035	83568232	83568276	1.050000e-08	73.1
155	TraesCS4B01G041500	chrUn	95.556	45	2	0	6992	7036	261595155	261595111	1.050000e-08	73.1
156	TraesCS4B01G041500	chrUn	85.915	71	5	5	6964	7032	410432232	410432299	3.770000e-08	71.3
157	TraesCS4B01G041500	chrUn	84.211	76	6	6	6964	7037	276925949	276925878	1.360000e-07	69.4
158	TraesCS4B01G041500	chrUn	85.507	69	6	4	6964	7031	470717631	470717566	1.360000e-07	69.4
159	TraesCS4B01G041500	chrUn	82.895	76	12	1	6957	7031	480766245	480766320	4.880000e-07	67.6

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4B01G041500	chr4B	28614702	28622235	7533	True	13913.000000	13913	100.000000	1	7534	1	chr4B.!!$R1	7533
1	TraesCS4B01G041500	chr4D	16649823	16656500	6677	True	1179.571429	2928	89.490286	1	7443	7	chr4D.!!$R5	7442
2	TraesCS4B01G041500	chr4A	583904398	583911121	6723	False	752.780000	2820	89.816600	1	7462	10	chr4A.!!$F5	7461
3	TraesCS4B01G041500	chr6D	414559443	414560657	1214	False	514.000000	881	81.617500	337	1842	2	chr6D.!!$F5	1505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
685	735	0.389296	GGCGCACCCATTTGTTAACC	60.389	55.0	10.83	0.00	0.00	2.85	F
2091	2251	0.033601	AGAGGACTCGTCTCCTGCAT	60.034	55.0	8.19	0.00	41.11	3.96	F
2911	3195	0.035820	TTTTTATCCACTCGCCGCCT	60.036	50.0	0.00	0.00	0.00	5.52	F
2965	3249	0.453793	CAGTAGTGCACTCTCTCCCG	59.546	60.0	25.56	7.86	34.26	5.14	F
3081	3386	0.461339	GCTCCCTAATTTGTCGCCGA	60.461	55.0	0.00	0.00	0.00	5.54	F
3870	4196	0.527565	CCTTATGGGCTTGTGTGCAC	59.472	55.0	10.75	10.75	36.79	4.57	F
5313	5733	2.030457	CCGCGTGCCATTTCTAAAGTAG	59.970	50.0	4.92	0.00	0.00	2.57	F
6317	6737	0.323302	TGAAACCAGAGCCGTATGCA	59.677	50.0	0.00	0.00	44.83	3.96	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2522	2726	0.248743	CCCGCGCGTAAATCACTCTA	60.249	55.000	29.95	0.00	0.00	2.43	R
3133	3439	0.172578	CCTGAACACCACTCGCGATA	59.827	55.000	10.36	0.00	0.00	2.92	R
4176	4508	0.463833	GCAATTCCCCGTCACCTAGG	60.464	60.000	7.41	7.41	0.00	3.02	R
4901	5317	2.158234	AGGGTTTGGCATACCTGGAAAA	60.158	45.455	23.51	0.00	35.92	2.29	R
4989	5405	2.282555	CAGTGAGCGTATGCACATACAC	59.717	50.000	18.25	10.35	43.58	2.90	R
5548	5968	0.323360	TTTCTTCCTTGGGGGCATCG	60.323	55.000	0.00	0.00	34.39	3.84	R
6319	6739	0.171903	CCGGCCTCTGCATCAAAAAG	59.828	55.000	0.00	0.00	40.13	2.27	R
7499	7973	0.392461	AAGGGTGAATGTATGCGCGT	60.392	50.000	8.43	7.55	0.00	6.01	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
330	338	6.013379	TGATAACCCTGTGCCTTCAAAATTA	58.987	36.000	0.00	0.00	0.00	1.40
401	417	3.420893	TGTGTCTGATGATTTGGGTTCC	58.579	45.455	0.00	0.00	0.00	3.62
472	522	8.594881	AATGATAATCTGGATAACTCGTTGAC	57.405	34.615	0.00	0.00	0.00	3.18
570	620	2.151502	TTGGCAAAGGAGAACAACCA	57.848	45.000	0.00	0.00	0.00	3.67
583	633	1.984026	CAACCACCCATTCCCAGCC	60.984	63.158	0.00	0.00	0.00	4.85
618	668	3.609853	AGCTCAAGATTTCATACGCCAA	58.390	40.909	0.00	0.00	0.00	4.52
685	735	0.389296	GGCGCACCCATTTGTTAACC	60.389	55.000	10.83	0.00	0.00	2.85
735	785	0.610687	CTCCTCCGATCAATAGGCCC	59.389	60.000	0.00	0.00	0.00	5.80
741	791	4.282496	CTCCGATCAATAGGCCCTAGTAT	58.718	47.826	0.00	0.00	0.00	2.12
768	818	1.748493	TGTGGTTTCTCTGTTTGTGCC	59.252	47.619	0.00	0.00	0.00	5.01
828	878	6.656314	TGTCTACTTATGCCAAACGTATTG	57.344	37.500	0.00	0.00	0.00	1.90
921	972	9.601217	GTTCCATTTTATCATATAGCCTATCGT	57.399	33.333	0.00	0.00	0.00	3.73
999	1050	3.011818	TGAGCATGTGCAGTCAAATAGG	58.988	45.455	7.83	0.00	45.16	2.57
1000	1051	3.273434	GAGCATGTGCAGTCAAATAGGA	58.727	45.455	7.83	0.00	45.16	2.94
1001	1052	3.881688	GAGCATGTGCAGTCAAATAGGAT	59.118	43.478	7.83	0.00	45.16	3.24
1035	1086	2.618241	TGAGCACTGACCATGTTTGTTC	59.382	45.455	0.00	0.00	0.00	3.18
1053	1104	6.414408	TTGTTCGATTGTTTGTGCATTTTT	57.586	29.167	0.00	0.00	0.00	1.94
1106	1157	4.994282	TGTACAACTTAGTGGAGGAGAGA	58.006	43.478	0.00	0.00	0.00	3.10
1107	1158	5.010933	TGTACAACTTAGTGGAGGAGAGAG	58.989	45.833	0.00	0.00	0.00	3.20
1184	1253	5.640147	TGGCTATTATTCTTTACCCCATGG	58.360	41.667	4.14	4.14	37.80	3.66
1185	1254	4.462834	GGCTATTATTCTTTACCCCATGGC	59.537	45.833	6.09	0.00	33.59	4.40
1186	1255	5.325239	GCTATTATTCTTTACCCCATGGCT	58.675	41.667	6.09	0.00	33.59	4.75
1218	1287	4.448210	TCCTAAATCAACCGGAGCATTAC	58.552	43.478	9.46	0.00	0.00	1.89
1312	1384	7.095982	CGCTTATTTTCCGTAATTTTGTTTGGT	60.096	33.333	0.00	0.00	0.00	3.67
1319	1391	9.765795	TTTCCGTAATTTTGTTTGGTGATTATT	57.234	25.926	0.00	0.00	0.00	1.40
1322	1394	7.380320	CGTAATTTTGTTTGGTGATTATTCGC	58.620	34.615	0.00	0.00	0.00	4.70
1328	1400	5.242434	TGTTTGGTGATTATTCGCTGTACT	58.758	37.500	0.00	0.00	32.76	2.73
1335	1407	4.096833	TGATTATTCGCTGTACTGTACGGT	59.903	41.667	23.65	12.92	37.38	4.83
1352	1424	1.338769	CGGTGGAAAGGGAGTAACTGG	60.339	57.143	0.00	0.00	0.00	4.00
1364	1436	5.059833	GGGAGTAACTGGCATTGATCTTAG	58.940	45.833	0.00	0.00	0.00	2.18
1365	1437	5.059833	GGAGTAACTGGCATTGATCTTAGG	58.940	45.833	0.00	0.00	0.00	2.69
1366	1438	5.041191	AGTAACTGGCATTGATCTTAGGG	57.959	43.478	0.00	0.00	0.00	3.53
1367	1439	2.355010	ACTGGCATTGATCTTAGGGC	57.645	50.000	0.00	0.00	0.00	5.19
1368	1440	1.565759	ACTGGCATTGATCTTAGGGCA	59.434	47.619	8.49	8.49	0.00	5.36
1370	1442	2.557056	CTGGCATTGATCTTAGGGCATG	59.443	50.000	9.06	0.00	33.40	4.06
1373	1445	3.503748	GGCATTGATCTTAGGGCATGTAC	59.496	47.826	0.00	0.00	0.00	2.90
1374	1446	4.136796	GCATTGATCTTAGGGCATGTACA	58.863	43.478	0.00	0.00	0.00	2.90
1375	1447	4.580167	GCATTGATCTTAGGGCATGTACAA	59.420	41.667	0.00	0.00	0.00	2.41
1376	1448	5.242393	GCATTGATCTTAGGGCATGTACAAT	59.758	40.000	0.00	0.00	0.00	2.71
1381	1453	2.613026	TAGGGCATGTACAATGGTCG	57.387	50.000	0.00	0.00	0.00	4.79
1382	1454	0.908910	AGGGCATGTACAATGGTCGA	59.091	50.000	0.00	0.00	0.00	4.20
1383	1455	1.490490	AGGGCATGTACAATGGTCGAT	59.510	47.619	0.00	0.00	0.00	3.59
1384	1456	2.703536	AGGGCATGTACAATGGTCGATA	59.296	45.455	0.00	0.00	0.00	2.92
1385	1457	3.135712	AGGGCATGTACAATGGTCGATAA	59.864	43.478	0.00	0.00	0.00	1.75
1386	1458	3.498397	GGGCATGTACAATGGTCGATAAG	59.502	47.826	0.00	0.00	0.00	1.73
1387	1459	3.498397	GGCATGTACAATGGTCGATAAGG	59.502	47.826	0.00	0.00	0.00	2.69
1388	1460	4.127171	GCATGTACAATGGTCGATAAGGT	58.873	43.478	0.00	0.00	0.00	3.50
1389	1461	5.294356	GCATGTACAATGGTCGATAAGGTA	58.706	41.667	0.00	0.00	0.00	3.08
1390	1462	5.405571	GCATGTACAATGGTCGATAAGGTAG	59.594	44.000	0.00	0.00	0.00	3.18
1391	1463	6.513180	CATGTACAATGGTCGATAAGGTAGT	58.487	40.000	0.00	0.00	0.00	2.73
1392	1464	6.140303	TGTACAATGGTCGATAAGGTAGTC	57.860	41.667	0.00	0.00	0.00	2.59
1393	1465	5.889853	TGTACAATGGTCGATAAGGTAGTCT	59.110	40.000	0.00	0.00	0.00	3.24
1394	1466	5.934402	ACAATGGTCGATAAGGTAGTCTT	57.066	39.130	0.00	0.00	39.40	3.01
1395	1467	7.557358	TGTACAATGGTCGATAAGGTAGTCTTA	59.443	37.037	0.00	0.00	41.66	2.10
1411	1483	9.553064	AGGTAGTCTTATCTTAAATCTTGCATG	57.447	33.333	0.00	0.00	0.00	4.06
1412	1484	9.331282	GGTAGTCTTATCTTAAATCTTGCATGT	57.669	33.333	0.00	0.00	0.00	3.21
1426	1498	6.624352	TCTTGCATGTAATTTAGAGATGGC	57.376	37.500	0.00	0.00	0.00	4.40
1427	1499	6.121590	TCTTGCATGTAATTTAGAGATGGCA	58.878	36.000	0.00	0.00	0.00	4.92
1428	1500	6.602803	TCTTGCATGTAATTTAGAGATGGCAA	59.397	34.615	0.00	0.00	0.00	4.52
1429	1501	6.772360	TGCATGTAATTTAGAGATGGCAAA	57.228	33.333	0.00	0.00	0.00	3.68
1430	1502	7.167924	TGCATGTAATTTAGAGATGGCAAAA	57.832	32.000	0.00	0.00	0.00	2.44
1431	1503	7.609960	TGCATGTAATTTAGAGATGGCAAAAA	58.390	30.769	0.00	0.00	0.00	1.94
1452	1524	6.916360	AAAAACATGTCTACAATGGGTCAT	57.084	33.333	0.00	0.00	0.00	3.06
1453	1525	6.515272	AAAACATGTCTACAATGGGTCATC	57.485	37.500	0.00	0.00	0.00	2.92
1454	1526	5.441718	AACATGTCTACAATGGGTCATCT	57.558	39.130	0.00	0.00	0.00	2.90
1455	1527	5.028549	ACATGTCTACAATGGGTCATCTC	57.971	43.478	0.00	0.00	0.00	2.75
1456	1528	4.718774	ACATGTCTACAATGGGTCATCTCT	59.281	41.667	0.00	0.00	0.00	3.10
1457	1529	5.190528	ACATGTCTACAATGGGTCATCTCTT	59.809	40.000	0.00	0.00	0.00	2.85
1458	1530	6.384015	ACATGTCTACAATGGGTCATCTCTTA	59.616	38.462	0.00	0.00	0.00	2.10
1459	1531	6.867519	TGTCTACAATGGGTCATCTCTTAA	57.132	37.500	0.00	0.00	0.00	1.85
1460	1532	6.640518	TGTCTACAATGGGTCATCTCTTAAC	58.359	40.000	0.00	0.00	0.00	2.01
1461	1533	6.049790	GTCTACAATGGGTCATCTCTTAACC	58.950	44.000	0.00	0.00	0.00	2.85
1462	1534	5.964477	TCTACAATGGGTCATCTCTTAACCT	59.036	40.000	0.00	0.00	33.42	3.50
1463	1535	5.520748	ACAATGGGTCATCTCTTAACCTT	57.479	39.130	0.00	0.00	33.42	3.50
1464	1536	6.636454	ACAATGGGTCATCTCTTAACCTTA	57.364	37.500	0.00	0.00	33.42	2.69
1465	1537	7.213178	ACAATGGGTCATCTCTTAACCTTAT	57.787	36.000	0.00	0.00	33.42	1.73
1466	1538	7.283329	ACAATGGGTCATCTCTTAACCTTATC	58.717	38.462	0.00	0.00	33.42	1.75
1467	1539	7.127955	ACAATGGGTCATCTCTTAACCTTATCT	59.872	37.037	0.00	0.00	33.42	1.98
1468	1540	7.698163	ATGGGTCATCTCTTAACCTTATCTT	57.302	36.000	0.00	0.00	33.42	2.40
1469	1541	7.125792	TGGGTCATCTCTTAACCTTATCTTC	57.874	40.000	0.00	0.00	33.42	2.87
1470	1542	6.672218	TGGGTCATCTCTTAACCTTATCTTCA	59.328	38.462	0.00	0.00	33.42	3.02
1471	1543	7.182026	TGGGTCATCTCTTAACCTTATCTTCAA	59.818	37.037	0.00	0.00	33.42	2.69
1472	1544	8.214364	GGGTCATCTCTTAACCTTATCTTCAAT	58.786	37.037	0.00	0.00	33.42	2.57
1515	1587	7.969536	ATATGGTGAGACATATTGTGCTAAC	57.030	36.000	0.00	0.00	40.23	2.34
1516	1588	5.159273	TGGTGAGACATATTGTGCTAACA	57.841	39.130	0.00	0.00	0.00	2.41
1517	1589	5.178061	TGGTGAGACATATTGTGCTAACAG	58.822	41.667	0.00	0.00	37.67	3.16
1518	1590	5.046663	TGGTGAGACATATTGTGCTAACAGA	60.047	40.000	0.00	0.00	37.67	3.41
1519	1591	6.051717	GGTGAGACATATTGTGCTAACAGAT	58.948	40.000	0.00	0.00	37.67	2.90
1520	1592	6.201806	GGTGAGACATATTGTGCTAACAGATC	59.798	42.308	0.00	0.00	37.67	2.75
1521	1593	6.758416	GTGAGACATATTGTGCTAACAGATCA	59.242	38.462	0.00	0.00	37.67	2.92
1522	1594	7.440556	GTGAGACATATTGTGCTAACAGATCAT	59.559	37.037	0.00	0.00	37.67	2.45
1523	1595	7.654923	TGAGACATATTGTGCTAACAGATCATC	59.345	37.037	0.00	0.00	37.67	2.92
1524	1596	7.733969	AGACATATTGTGCTAACAGATCATCT	58.266	34.615	0.00	0.00	37.67	2.90
1525	1597	7.871973	AGACATATTGTGCTAACAGATCATCTC	59.128	37.037	0.00	0.00	37.67	2.75
1526	1598	7.733969	ACATATTGTGCTAACAGATCATCTCT	58.266	34.615	0.00	0.00	37.67	3.10
1527	1599	8.209584	ACATATTGTGCTAACAGATCATCTCTT	58.790	33.333	0.00	0.00	37.67	2.85
1528	1600	6.922247	ATTGTGCTAACAGATCATCTCTTG	57.078	37.500	0.00	0.00	37.67	3.02
1529	1601	4.186926	TGTGCTAACAGATCATCTCTTGC	58.813	43.478	0.00	0.00	29.16	4.01
1530	1602	3.559242	GTGCTAACAGATCATCTCTTGCC	59.441	47.826	0.00	0.00	29.16	4.52
1531	1603	3.453717	TGCTAACAGATCATCTCTTGCCT	59.546	43.478	0.00	0.00	29.16	4.75
1532	1604	4.080695	TGCTAACAGATCATCTCTTGCCTT	60.081	41.667	0.00	0.00	29.16	4.35
1533	1605	4.511082	GCTAACAGATCATCTCTTGCCTTC	59.489	45.833	0.00	0.00	29.16	3.46
1534	1606	4.840716	AACAGATCATCTCTTGCCTTCT	57.159	40.909	0.00	0.00	29.16	2.85
1535	1607	4.405116	ACAGATCATCTCTTGCCTTCTC	57.595	45.455	0.00	0.00	29.16	2.87
1536	1608	4.032310	ACAGATCATCTCTTGCCTTCTCT	58.968	43.478	0.00	0.00	29.16	3.10
1537	1609	4.470664	ACAGATCATCTCTTGCCTTCTCTT	59.529	41.667	0.00	0.00	29.16	2.85
1538	1610	5.660417	ACAGATCATCTCTTGCCTTCTCTTA	59.340	40.000	0.00	0.00	29.16	2.10
1539	1611	6.155910	ACAGATCATCTCTTGCCTTCTCTTAA	59.844	38.462	0.00	0.00	29.16	1.85
1540	1612	7.147514	ACAGATCATCTCTTGCCTTCTCTTAAT	60.148	37.037	0.00	0.00	29.16	1.40
1541	1613	7.716123	CAGATCATCTCTTGCCTTCTCTTAATT	59.284	37.037	0.00	0.00	29.16	1.40
1542	1614	8.932610	AGATCATCTCTTGCCTTCTCTTAATTA	58.067	33.333	0.00	0.00	0.00	1.40
1543	1615	9.553064	GATCATCTCTTGCCTTCTCTTAATTAA	57.447	33.333	0.00	0.00	0.00	1.40
1544	1616	8.954950	TCATCTCTTGCCTTCTCTTAATTAAG	57.045	34.615	17.60	17.60	34.65	1.85
1545	1617	8.762645	TCATCTCTTGCCTTCTCTTAATTAAGA	58.237	33.333	23.26	23.26	39.82	2.10
1559	1631	8.779354	TCTTAATTAAGAGAAGACAAGCCTTC	57.221	34.615	21.46	0.00	37.40	3.46
1570	1642	7.622893	GAAGACAAGCCTTCTCTTATGATTT	57.377	36.000	0.00	0.00	39.44	2.17
1571	1643	7.622893	AAGACAAGCCTTCTCTTATGATTTC	57.377	36.000	0.00	0.00	0.00	2.17
1572	1644	6.956497	AGACAAGCCTTCTCTTATGATTTCT	58.044	36.000	0.00	0.00	0.00	2.52
1573	1645	7.047271	AGACAAGCCTTCTCTTATGATTTCTC	58.953	38.462	0.00	0.00	0.00	2.87
1574	1646	6.956497	ACAAGCCTTCTCTTATGATTTCTCT	58.044	36.000	0.00	0.00	0.00	3.10
1575	1647	7.047271	ACAAGCCTTCTCTTATGATTTCTCTC	58.953	38.462	0.00	0.00	0.00	3.20
1576	1648	7.092935	ACAAGCCTTCTCTTATGATTTCTCTCT	60.093	37.037	0.00	0.00	0.00	3.10
1577	1649	7.054491	AGCCTTCTCTTATGATTTCTCTCTC	57.946	40.000	0.00	0.00	0.00	3.20
1578	1650	6.041979	AGCCTTCTCTTATGATTTCTCTCTCC	59.958	42.308	0.00	0.00	0.00	3.71
1579	1651	6.041979	GCCTTCTCTTATGATTTCTCTCTCCT	59.958	42.308	0.00	0.00	0.00	3.69
1580	1652	7.661040	CCTTCTCTTATGATTTCTCTCTCCTC	58.339	42.308	0.00	0.00	0.00	3.71
1581	1653	7.255942	CCTTCTCTTATGATTTCTCTCTCCTCC	60.256	44.444	0.00	0.00	0.00	4.30
1582	1654	6.677552	TCTCTTATGATTTCTCTCTCCTCCA	58.322	40.000	0.00	0.00	0.00	3.86
1583	1655	6.549364	TCTCTTATGATTTCTCTCTCCTCCAC	59.451	42.308	0.00	0.00	0.00	4.02
1584	1656	5.600484	TCTTATGATTTCTCTCTCCTCCACC	59.400	44.000	0.00	0.00	0.00	4.61
1585	1657	3.481559	TGATTTCTCTCTCCTCCACCT	57.518	47.619	0.00	0.00	0.00	4.00
1586	1658	3.370104	TGATTTCTCTCTCCTCCACCTC	58.630	50.000	0.00	0.00	0.00	3.85
1587	1659	3.245766	TGATTTCTCTCTCCTCCACCTCA	60.246	47.826	0.00	0.00	0.00	3.86
1588	1660	3.481559	TTTCTCTCTCCTCCACCTCAT	57.518	47.619	0.00	0.00	0.00	2.90
1589	1661	2.746279	TCTCTCTCCTCCACCTCATC	57.254	55.000	0.00	0.00	0.00	2.92
1590	1662	1.925959	TCTCTCTCCTCCACCTCATCA	59.074	52.381	0.00	0.00	0.00	3.07
1591	1663	2.517553	TCTCTCTCCTCCACCTCATCAT	59.482	50.000	0.00	0.00	0.00	2.45
1592	1664	3.052262	TCTCTCTCCTCCACCTCATCATT	60.052	47.826	0.00	0.00	0.00	2.57
1593	1665	3.710677	CTCTCTCCTCCACCTCATCATTT	59.289	47.826	0.00	0.00	0.00	2.32
1594	1666	4.883759	TCTCTCCTCCACCTCATCATTTA	58.116	43.478	0.00	0.00	0.00	1.40
1595	1667	5.471424	TCTCTCCTCCACCTCATCATTTAT	58.529	41.667	0.00	0.00	0.00	1.40
1596	1668	5.541868	TCTCTCCTCCACCTCATCATTTATC	59.458	44.000	0.00	0.00	0.00	1.75
1597	1669	4.594920	TCTCCTCCACCTCATCATTTATCC	59.405	45.833	0.00	0.00	0.00	2.59
1598	1670	4.570926	TCCTCCACCTCATCATTTATCCT	58.429	43.478	0.00	0.00	0.00	3.24
1599	1671	5.726560	TCCTCCACCTCATCATTTATCCTA	58.273	41.667	0.00	0.00	0.00	2.94
1600	1672	5.544176	TCCTCCACCTCATCATTTATCCTAC	59.456	44.000	0.00	0.00	0.00	3.18
1601	1673	5.468540	TCCACCTCATCATTTATCCTACG	57.531	43.478	0.00	0.00	0.00	3.51
1602	1674	4.899457	TCCACCTCATCATTTATCCTACGT	59.101	41.667	0.00	0.00	0.00	3.57
1603	1675	4.991056	CCACCTCATCATTTATCCTACGTG	59.009	45.833	0.00	0.00	0.00	4.49
1604	1676	4.991056	CACCTCATCATTTATCCTACGTGG	59.009	45.833	0.00	0.00	37.10	4.94
1605	1677	3.997021	CCTCATCATTTATCCTACGTGGC	59.003	47.826	0.00	0.00	35.26	5.01
1606	1678	4.503123	CCTCATCATTTATCCTACGTGGCA	60.503	45.833	0.00	0.00	35.26	4.92
1607	1679	5.227569	TCATCATTTATCCTACGTGGCAT	57.772	39.130	0.00	0.00	35.26	4.40
1608	1680	5.620206	TCATCATTTATCCTACGTGGCATT	58.380	37.500	0.00	0.00	35.26	3.56
1609	1681	5.469760	TCATCATTTATCCTACGTGGCATTG	59.530	40.000	0.00	0.00	35.26	2.82
1610	1682	3.563808	TCATTTATCCTACGTGGCATTGC	59.436	43.478	0.00	0.00	35.26	3.56
1611	1683	3.275617	TTTATCCTACGTGGCATTGCT	57.724	42.857	8.82	0.00	35.26	3.91
1612	1684	4.409718	TTTATCCTACGTGGCATTGCTA	57.590	40.909	8.82	0.00	35.26	3.49
1613	1685	4.409718	TTATCCTACGTGGCATTGCTAA	57.590	40.909	8.82	0.00	35.26	3.09
1614	1686	2.309528	TCCTACGTGGCATTGCTAAG	57.690	50.000	8.82	7.52	35.26	2.18
1615	1687	1.828595	TCCTACGTGGCATTGCTAAGA	59.171	47.619	14.29	0.00	35.26	2.10
1616	1688	2.434336	TCCTACGTGGCATTGCTAAGAT	59.566	45.455	14.29	2.45	35.26	2.40
1617	1689	3.639561	TCCTACGTGGCATTGCTAAGATA	59.360	43.478	14.29	3.37	35.26	1.98
1618	1690	3.990469	CCTACGTGGCATTGCTAAGATAG	59.010	47.826	14.29	11.05	0.00	2.08
1619	1691	3.819564	ACGTGGCATTGCTAAGATAGA	57.180	42.857	14.29	0.00	0.00	1.98
1620	1692	4.137116	ACGTGGCATTGCTAAGATAGAA	57.863	40.909	14.29	0.00	0.00	2.10
1621	1693	3.871594	ACGTGGCATTGCTAAGATAGAAC	59.128	43.478	14.29	0.00	0.00	3.01
1622	1694	3.248602	CGTGGCATTGCTAAGATAGAACC	59.751	47.826	8.82	0.00	0.00	3.62
1623	1695	4.199310	GTGGCATTGCTAAGATAGAACCA	58.801	43.478	8.82	0.00	0.00	3.67
1624	1696	4.823989	GTGGCATTGCTAAGATAGAACCAT	59.176	41.667	8.82	0.00	0.00	3.55
1625	1697	5.300286	GTGGCATTGCTAAGATAGAACCATT	59.700	40.000	8.82	0.00	0.00	3.16
1626	1698	5.300034	TGGCATTGCTAAGATAGAACCATTG	59.700	40.000	8.82	0.00	0.00	2.82
1627	1699	5.300286	GGCATTGCTAAGATAGAACCATTGT	59.700	40.000	8.82	0.00	0.00	2.71
1628	1700	6.486657	GGCATTGCTAAGATAGAACCATTGTA	59.513	38.462	8.82	0.00	0.00	2.41
1629	1701	7.355778	GCATTGCTAAGATAGAACCATTGTAC	58.644	38.462	0.16	0.00	0.00	2.90
1630	1702	7.012327	GCATTGCTAAGATAGAACCATTGTACA	59.988	37.037	0.16	0.00	0.00	2.90
1631	1703	9.060347	CATTGCTAAGATAGAACCATTGTACAT	57.940	33.333	0.00	0.00	0.00	2.29
1632	1704	8.437360	TTGCTAAGATAGAACCATTGTACATG	57.563	34.615	0.00	0.00	0.00	3.21
1633	1705	6.483307	TGCTAAGATAGAACCATTGTACATGC	59.517	38.462	0.00	0.00	0.00	4.06
1634	1706	6.073003	GCTAAGATAGAACCATTGTACATGCC	60.073	42.308	0.00	0.00	0.00	4.40
1635	1707	4.718961	AGATAGAACCATTGTACATGCCC	58.281	43.478	0.00	0.00	0.00	5.36
1636	1708	4.413520	AGATAGAACCATTGTACATGCCCT	59.586	41.667	0.00	0.00	0.00	5.19
1637	1709	3.456380	AGAACCATTGTACATGCCCTT	57.544	42.857	0.00	0.00	0.00	3.95
1638	1710	4.584638	AGAACCATTGTACATGCCCTTA	57.415	40.909	0.00	0.00	0.00	2.69
1670	1742	3.284617	TGCTGACTGGATCATCAAATGG	58.715	45.455	0.00	0.00	36.48	3.16
1682	1755	4.858850	TCATCAAATGGGATGCTAACTGT	58.141	39.130	0.00	0.00	43.44	3.55
1724	1798	2.113860	ATGTGATTGAGGTCCCGTTG	57.886	50.000	0.00	0.00	0.00	4.10
1759	1836	1.600636	CTTGCACATGGTGGTCGGT	60.601	57.895	0.00	0.00	33.64	4.69
1842	1924	3.678056	TGTAGAGTGTGCTTTACCCTG	57.322	47.619	0.00	0.00	32.98	4.45
1856	1938	6.207810	TGCTTTACCCTGTTCGTTGAATATTT	59.792	34.615	0.00	0.00	0.00	1.40
1857	1939	7.088272	GCTTTACCCTGTTCGTTGAATATTTT	58.912	34.615	0.00	0.00	0.00	1.82
1858	1940	7.061789	GCTTTACCCTGTTCGTTGAATATTTTG	59.938	37.037	0.00	0.00	0.00	2.44
1869	1951	7.586747	TCGTTGAATATTTTGGTGGAGTAAAC	58.413	34.615	0.00	0.00	0.00	2.01
1874	1956	8.364142	TGAATATTTTGGTGGAGTAAACTTTGG	58.636	33.333	0.00	0.00	0.00	3.28
1875	1957	5.545063	ATTTTGGTGGAGTAAACTTTGGG	57.455	39.130	0.00	0.00	0.00	4.12
1930	2072	5.920273	CGAAGTAGTAGTAACACGGGAAAAA	59.080	40.000	0.00	0.00	0.00	1.94
1977	2133	0.452987	CATGCCACCACTGGATTTCG	59.547	55.000	0.71	0.00	40.55	3.46
1983	2139	0.606401	ACCACTGGATTTCGGCTGTG	60.606	55.000	0.71	0.00	0.00	3.66
1984	2140	0.606401	CCACTGGATTTCGGCTGTGT	60.606	55.000	0.00	0.00	0.00	3.72
1985	2141	0.798776	CACTGGATTTCGGCTGTGTC	59.201	55.000	0.00	0.00	0.00	3.67
1986	2142	0.321653	ACTGGATTTCGGCTGTGTCC	60.322	55.000	0.00	0.00	0.00	4.02
2023	2179	1.761174	GGGACCTTTGACAGCCAGA	59.239	57.895	0.00	0.00	0.00	3.86
2060	2220	2.481276	CGTGGTCGAGATGGATAAGCAA	60.481	50.000	0.00	0.00	39.71	3.91
2091	2251	0.033601	AGAGGACTCGTCTCCTGCAT	60.034	55.000	8.19	0.00	41.11	3.96
2107	2277	1.004560	CATCACAGGACACCGTGCT	60.005	57.895	0.00	0.00	33.69	4.40
2108	2278	1.016130	CATCACAGGACACCGTGCTC	61.016	60.000	0.00	0.00	30.21	4.26
2129	2299	2.676839	CGTATGTCGTCTACCAGTCTGT	59.323	50.000	0.00	0.00	34.52	3.41
2143	2313	2.752354	CAGTCTGTACTCTGGAGTCTGG	59.248	54.545	6.52	0.00	42.54	3.86
2144	2314	2.645297	AGTCTGTACTCTGGAGTCTGGA	59.355	50.000	6.52	1.84	42.54	3.86
2145	2315	2.750712	GTCTGTACTCTGGAGTCTGGAC	59.249	54.545	6.52	9.44	42.54	4.02
2146	2316	2.645297	TCTGTACTCTGGAGTCTGGACT	59.355	50.000	6.52	2.62	45.84	3.85
2282	2452	1.335597	CCTGCTCGTGTAAGTCGTGAA	60.336	52.381	0.00	0.00	0.00	3.18
2286	2456	2.231693	CTCGTGTAAGTCGTGAACTCG	58.768	52.381	0.00	0.00	37.17	4.18
2288	2458	1.707117	CGTGTAAGTCGTGAACTCGTG	59.293	52.381	0.00	0.00	37.17	4.35
2289	2459	2.600556	CGTGTAAGTCGTGAACTCGTGA	60.601	50.000	0.00	0.00	37.17	4.35
2290	2460	3.562505	GTGTAAGTCGTGAACTCGTGAT	58.437	45.455	0.00	0.00	37.17	3.06
2291	2461	3.361053	GTGTAAGTCGTGAACTCGTGATG	59.639	47.826	0.00	0.00	37.17	3.07
2292	2462	3.251487	TGTAAGTCGTGAACTCGTGATGA	59.749	43.478	0.00	0.00	37.17	2.92
2335	2511	4.622650	ACCGCCCGCACCGTAAAA	62.623	61.111	0.00	0.00	0.00	1.52
2340	2516	1.676303	CCCGCACCGTAAAACCCAT	60.676	57.895	0.00	0.00	0.00	4.00
2350	2526	2.268167	TAAAACCCATACCCGGCCCG	62.268	60.000	0.00	0.00	0.00	6.13
2369	2545	4.100084	CCTGGATGGAGCACGCCA	62.100	66.667	0.00	0.00	43.23	5.69
2370	2546	2.513204	CTGGATGGAGCACGCCAG	60.513	66.667	0.00	0.00	42.15	4.85
2371	2547	4.783621	TGGATGGAGCACGCCAGC	62.784	66.667	0.00	0.00	43.45	4.85
2389	2565	3.807368	CCCCCTTGTCTCGGAAGT	58.193	61.111	0.00	0.00	0.00	3.01
2391	2567	1.481056	CCCCCTTGTCTCGGAAGTGT	61.481	60.000	0.00	0.00	0.00	3.55
2392	2568	0.320771	CCCCTTGTCTCGGAAGTGTG	60.321	60.000	0.00	0.00	0.00	3.82
2393	2569	0.951040	CCCTTGTCTCGGAAGTGTGC	60.951	60.000	0.00	0.00	0.00	4.57
2394	2570	1.284982	CCTTGTCTCGGAAGTGTGCG	61.285	60.000	0.00	0.00	40.45	5.34
2395	2571	0.597637	CTTGTCTCGGAAGTGTGCGT	60.598	55.000	0.00	0.00	39.95	5.24
2397	2573	2.355837	TCTCGGAAGTGTGCGTGC	60.356	61.111	0.00	0.00	39.95	5.34
2398	2574	2.661537	CTCGGAAGTGTGCGTGCA	60.662	61.111	0.00	0.00	39.95	4.57
2399	2575	2.943345	CTCGGAAGTGTGCGTGCAC	61.943	63.158	17.72	17.72	46.33	4.57
2415	2591	1.063811	CACGTTGCATGCACACACA	59.936	52.632	22.58	1.43	0.00	3.72
2470	2667	0.318699	CGAGCGAAATCCCAGCGATA	60.319	55.000	0.00	0.00	35.78	2.92
2509	2713	1.819928	TGCAATAGAAAAGGCGAGCA	58.180	45.000	0.00	0.00	0.00	4.26
2524	2728	3.326733	CGAGCAGCAGTAGTACAGTAG	57.673	52.381	2.52	0.00	0.00	2.57
2528	2732	3.692101	AGCAGCAGTAGTACAGTAGAGTG	59.308	47.826	2.52	0.00	0.00	3.51
2532	2736	6.626181	GCAGCAGTAGTACAGTAGAGTGATTT	60.626	42.308	2.52	0.00	0.00	2.17
2533	2737	7.415318	GCAGCAGTAGTACAGTAGAGTGATTTA	60.415	40.741	2.52	0.00	0.00	1.40
2650	2876	0.179205	GCTCAAGCAAGCAAGTAGCG	60.179	55.000	0.00	0.00	44.68	4.26
2658	2884	3.503363	GCAAGTAGCGGCAGCCAG	61.503	66.667	13.30	5.53	46.67	4.85
2659	2885	2.821366	CAAGTAGCGGCAGCCAGG	60.821	66.667	13.30	0.00	46.67	4.45
2660	2886	4.785453	AAGTAGCGGCAGCCAGGC	62.785	66.667	13.30	1.84	46.67	4.85
2708	2982	2.282674	CACCAGCACCAGCACCAT	60.283	61.111	0.00	0.00	45.49	3.55
2709	2983	2.034687	ACCAGCACCAGCACCATC	59.965	61.111	0.00	0.00	45.49	3.51
2710	2984	2.034532	CCAGCACCAGCACCATCA	59.965	61.111	0.00	0.00	45.49	3.07
2711	2985	2.338015	CCAGCACCAGCACCATCAC	61.338	63.158	0.00	0.00	45.49	3.06
2712	2986	2.034687	AGCACCAGCACCATCACC	59.965	61.111	0.00	0.00	45.49	4.02
2713	2987	2.282391	GCACCAGCACCATCACCA	60.282	61.111	0.00	0.00	41.58	4.17
2716	2990	0.322726	CACCAGCACCATCACCATCA	60.323	55.000	0.00	0.00	0.00	3.07
2735	3009	2.429058	CATCGCCATGAGGAGGGG	59.571	66.667	0.00	0.00	40.19	4.79
2763	3037	4.798344	CAGCAGCAGCAGGGGGAG	62.798	72.222	3.17	0.00	45.49	4.30
2841	3125	3.056938	AGCTCGACGACGCCTTCT	61.057	61.111	13.34	0.00	39.58	2.85
2854	3138	1.294659	GCCTTCTTGCAGGTCAGTCG	61.295	60.000	0.00	0.00	36.15	4.18
2856	3140	1.294659	CTTCTTGCAGGTCAGTCGGC	61.295	60.000	0.00	0.00	0.00	5.54
2857	3141	2.731691	TTCTTGCAGGTCAGTCGGCC	62.732	60.000	0.00	0.00	0.00	6.13
2858	3142	3.535629	CTTGCAGGTCAGTCGGCCA	62.536	63.158	2.24	0.00	0.00	5.36
2859	3143	3.535629	TTGCAGGTCAGTCGGCCAG	62.536	63.158	2.24	0.00	0.00	4.85
2860	3144	4.008933	GCAGGTCAGTCGGCCAGT	62.009	66.667	2.24	0.00	0.00	4.00
2861	3145	2.262915	CAGGTCAGTCGGCCAGTC	59.737	66.667	2.24	0.00	0.00	3.51
2863	3147	3.311110	GGTCAGTCGGCCAGTCCA	61.311	66.667	2.24	0.00	34.01	4.02
2866	3150	1.070786	TCAGTCGGCCAGTCCAAAC	59.929	57.895	2.24	0.00	34.01	2.93
2878	3162	2.203422	CCAAACCCACCTTCGCCA	60.203	61.111	0.00	0.00	0.00	5.69
2879	3163	1.830408	CCAAACCCACCTTCGCCAA	60.830	57.895	0.00	0.00	0.00	4.52
2880	3164	1.659794	CAAACCCACCTTCGCCAAG	59.340	57.895	0.00	0.00	0.00	3.61
2882	3166	0.475044	AAACCCACCTTCGCCAAGTA	59.525	50.000	0.00	0.00	0.00	2.24
2884	3168	1.125711	ACCCACCTTCGCCAAGTACT	61.126	55.000	0.00	0.00	0.00	2.73
2889	3173	3.428589	CCACCTTCGCCAAGTACTACTAC	60.429	52.174	0.00	0.00	0.00	2.73
2895	3179	5.314923	TCGCCAAGTACTACTACGATTTT	57.685	39.130	0.00	0.00	0.00	1.82
2896	3180	5.713025	TCGCCAAGTACTACTACGATTTTT	58.287	37.500	0.00	0.00	0.00	1.94
2897	3181	6.851609	TCGCCAAGTACTACTACGATTTTTA	58.148	36.000	0.00	0.00	0.00	1.52
2898	3182	7.483307	TCGCCAAGTACTACTACGATTTTTAT	58.517	34.615	0.00	0.00	0.00	1.40
2899	3183	7.645340	TCGCCAAGTACTACTACGATTTTTATC	59.355	37.037	0.00	0.00	0.00	1.75
2900	3184	7.096312	CGCCAAGTACTACTACGATTTTTATCC	60.096	40.741	0.00	0.00	0.00	2.59
2901	3185	7.707893	GCCAAGTACTACTACGATTTTTATCCA	59.292	37.037	0.00	0.00	0.00	3.41
2902	3186	9.028185	CCAAGTACTACTACGATTTTTATCCAC	57.972	37.037	0.00	0.00	0.00	4.02
2903	3187	9.798994	CAAGTACTACTACGATTTTTATCCACT	57.201	33.333	0.00	0.00	0.00	4.00
2905	3189	8.341173	AGTACTACTACGATTTTTATCCACTCG	58.659	37.037	0.00	0.00	35.56	4.18
2906	3190	5.975939	ACTACTACGATTTTTATCCACTCGC	59.024	40.000	0.00	0.00	32.81	5.03
2907	3191	4.117685	ACTACGATTTTTATCCACTCGCC	58.882	43.478	0.00	0.00	32.81	5.54
2908	3192	1.931172	ACGATTTTTATCCACTCGCCG	59.069	47.619	0.00	0.00	32.81	6.46
2910	3194	1.002792	GATTTTTATCCACTCGCCGCC	60.003	52.381	0.00	0.00	0.00	6.13
2911	3195	0.035820	TTTTTATCCACTCGCCGCCT	60.036	50.000	0.00	0.00	0.00	5.52
2912	3196	0.742990	TTTTATCCACTCGCCGCCTG	60.743	55.000	0.00	0.00	0.00	4.85
2926	3210	4.430765	CCTGGTTCGACCGTCGGG	62.431	72.222	20.35	9.64	42.58	5.14
2927	3211	4.430765	CTGGTTCGACCGTCGGGG	62.431	72.222	20.35	7.26	42.58	5.73
2928	3212	4.972733	TGGTTCGACCGTCGGGGA	62.973	66.667	20.35	9.75	42.58	4.81
2929	3213	4.125695	GGTTCGACCGTCGGGGAG	62.126	72.222	20.35	6.40	40.88	4.30
2930	3214	4.790861	GTTCGACCGTCGGGGAGC	62.791	72.222	20.35	10.68	40.88	4.70
2961	3245	2.598565	TGGAACAGTAGTGCACTCTCT	58.401	47.619	25.56	19.57	34.26	3.10
2963	3247	2.094442	GGAACAGTAGTGCACTCTCTCC	60.094	54.545	25.56	20.51	34.26	3.71
2965	3249	0.453793	CAGTAGTGCACTCTCTCCCG	59.546	60.000	25.56	7.86	34.26	5.14
2966	3250	0.681564	AGTAGTGCACTCTCTCCCGG	60.682	60.000	25.56	0.00	28.33	5.73
2971	3272	4.803426	CACTCTCTCCCGGCGCAC	62.803	72.222	10.83	0.00	0.00	5.34
3060	3365	1.603739	GGTTTCTTCTGGCCGGCTT	60.604	57.895	28.56	0.00	0.00	4.35
3076	3381	2.159379	CGGCTTTGCTCCCTAATTTGTC	60.159	50.000	0.00	0.00	0.00	3.18
3081	3386	0.461339	GCTCCCTAATTTGTCGCCGA	60.461	55.000	0.00	0.00	0.00	5.54
3133	3439	2.685017	TCTGGCCTGGCGATCTGT	60.685	61.111	13.40	0.00	0.00	3.41
3134	3440	1.381191	TCTGGCCTGGCGATCTGTA	60.381	57.895	13.40	0.00	0.00	2.74
3135	3441	0.760567	TCTGGCCTGGCGATCTGTAT	60.761	55.000	13.40	0.00	0.00	2.29
3180	3489	2.180769	CTGATTCGACGGCGTGGA	59.819	61.111	21.19	20.99	38.98	4.02
3314	3630	3.722728	ATGGGACGTCCGATTTACTAC	57.277	47.619	27.68	11.32	38.76	2.73
3349	3665	3.066621	AGACGTTGATGTGTGCATTTTGT	59.933	39.130	0.00	0.00	35.07	2.83
3353	3669	4.916831	CGTTGATGTGTGCATTTTGTACAT	59.083	37.500	0.00	0.00	44.34	2.29
3383	3699	3.064207	TGTCTCATAAACACGAGGTTGC	58.936	45.455	0.00	0.00	40.35	4.17
3452	3773	7.081976	GTGTCAACATTGGATAAAACTGTACC	58.918	38.462	0.00	0.00	0.00	3.34
3472	3796	5.816449	ACCGTACTAGCTAACTTCTTCTC	57.184	43.478	0.00	0.00	0.00	2.87
3479	3803	7.817418	ACTAGCTAACTTCTTCTCCTATGAG	57.183	40.000	0.00	0.00	40.17	2.90
3513	3837	6.918892	ATTGCGCTGTATATACAACAGAAA	57.081	33.333	16.17	11.14	45.89	2.52
3547	3871	6.812998	TGTACACCTAAAGTATGCATCCTAC	58.187	40.000	0.19	0.00	0.00	3.18
3553	3877	6.327626	ACCTAAAGTATGCATCCTACACTCAT	59.672	38.462	0.19	0.00	0.00	2.90
3628	3952	8.202811	AGAAATACTCCCTCCGTTTCTAAATAC	58.797	37.037	0.00	0.00	37.36	1.89
3677	4001	8.095937	TGAACTACATACGGATGTATACAGAG	57.904	38.462	20.64	12.20	45.42	3.35
3678	4002	7.718314	TGAACTACATACGGATGTATACAGAGT	59.282	37.037	20.64	12.85	45.42	3.24
3679	4003	8.461249	AACTACATACGGATGTATACAGAGTT	57.539	34.615	20.64	17.73	45.42	3.01
3680	4004	9.565090	AACTACATACGGATGTATACAGAGTTA	57.435	33.333	20.64	0.00	45.42	2.24
3681	4005	8.997323	ACTACATACGGATGTATACAGAGTTAC	58.003	37.037	20.64	0.00	45.42	2.50
3682	4006	7.812690	ACATACGGATGTATACAGAGTTACA	57.187	36.000	12.79	0.00	44.77	2.41
3683	4007	7.872881	ACATACGGATGTATACAGAGTTACAG	58.127	38.462	12.79	1.05	44.77	2.74
3684	4008	5.769484	ACGGATGTATACAGAGTTACAGG	57.231	43.478	11.91	0.00	32.24	4.00
3731	4055	3.965379	TTTTGCTCCGTATGTAGTCCA	57.035	42.857	0.00	0.00	0.00	4.02
3732	4056	4.481368	TTTTGCTCCGTATGTAGTCCAT	57.519	40.909	0.00	0.00	37.58	3.41
3787	4111	6.294843	GGAATGGAAGGAGTAGTATAGAGTGC	60.295	46.154	0.00	0.00	0.00	4.40
3870	4196	0.527565	CCTTATGGGCTTGTGTGCAC	59.472	55.000	10.75	10.75	36.79	4.57
3902	4228	8.353423	ACCAGCACATCTTTTAATTCTGTTAT	57.647	30.769	0.00	0.00	0.00	1.89
3997	4323	3.312828	GCTATCCTGCTTCTGTACATCG	58.687	50.000	0.00	0.00	0.00	3.84
4176	4508	7.299307	ATGAAGACATTTTGGTAGCAGACCTC	61.299	42.308	9.05	0.00	40.42	3.85
4234	4566	6.125327	TCATCACTTTCTACTTCTCTAGCG	57.875	41.667	0.00	0.00	0.00	4.26
4249	4581	2.621998	TCTAGCGTGCAATCCTACTACC	59.378	50.000	0.00	0.00	0.00	3.18
4265	4679	8.525290	TCCTACTACCTGGTATTACTTTGTAC	57.475	38.462	7.07	0.00	0.00	2.90
4266	4680	8.339247	TCCTACTACCTGGTATTACTTTGTACT	58.661	37.037	7.07	0.00	0.00	2.73
4267	4681	8.628280	CCTACTACCTGGTATTACTTTGTACTC	58.372	40.741	7.07	0.00	0.00	2.59
4268	4682	7.415592	ACTACCTGGTATTACTTTGTACTCC	57.584	40.000	7.07	0.00	0.00	3.85
4269	4683	5.688814	ACCTGGTATTACTTTGTACTCCC	57.311	43.478	0.00	0.00	0.00	4.30
4270	4684	5.347978	ACCTGGTATTACTTTGTACTCCCT	58.652	41.667	0.00	0.00	0.00	4.20
4271	4685	5.424573	ACCTGGTATTACTTTGTACTCCCTC	59.575	44.000	0.00	0.00	0.00	4.30
4272	4686	5.661759	CCTGGTATTACTTTGTACTCCCTCT	59.338	44.000	0.00	0.00	0.00	3.69
4273	4687	6.183360	CCTGGTATTACTTTGTACTCCCTCTC	60.183	46.154	0.00	0.00	0.00	3.20
4274	4688	6.500336	TGGTATTACTTTGTACTCCCTCTCT	58.500	40.000	0.00	0.00	0.00	3.10
4275	4689	7.645942	TGGTATTACTTTGTACTCCCTCTCTA	58.354	38.462	0.00	0.00	0.00	2.43
4276	4690	8.117956	TGGTATTACTTTGTACTCCCTCTCTAA	58.882	37.037	0.00	0.00	0.00	2.10
4277	4691	8.975295	GGTATTACTTTGTACTCCCTCTCTAAA	58.025	37.037	0.00	0.00	0.00	1.85
4279	4693	8.896722	ATTACTTTGTACTCCCTCTCTAAAGA	57.103	34.615	0.00	0.00	0.00	2.52
4280	4694	8.716674	TTACTTTGTACTCCCTCTCTAAAGAA	57.283	34.615	0.00	0.00	0.00	2.52
4281	4695	7.613551	ACTTTGTACTCCCTCTCTAAAGAAA	57.386	36.000	0.00	0.00	0.00	2.52
4282	4696	8.208575	ACTTTGTACTCCCTCTCTAAAGAAAT	57.791	34.615	0.00	0.00	0.00	2.17
4283	4697	9.322769	ACTTTGTACTCCCTCTCTAAAGAAATA	57.677	33.333	0.00	0.00	0.00	1.40
4290	4704	8.866093	ACTCCCTCTCTAAAGAAATATAAGAGC	58.134	37.037	0.00	0.00	34.89	4.09
4291	4705	9.088987	CTCCCTCTCTAAAGAAATATAAGAGCT	57.911	37.037	0.00	0.00	34.89	4.09
4357	4771	7.880713	TCCAGTTATGTAATGTGCAACTAAGAA	59.119	33.333	0.00	0.00	38.04	2.52
4732	5148	9.737844	TTTGGTAAAACTAACGGGAAATATACT	57.262	29.630	0.00	0.00	0.00	2.12
4735	5151	7.986889	GGTAAAACTAACGGGAAATATACTCCA	59.013	37.037	6.20	0.00	34.34	3.86
4807	5223	2.141535	AGCAGTTCAGTCAAGTCGTC	57.858	50.000	0.00	0.00	0.00	4.20
4883	5299	3.942130	ATTTTCTTTCGAAAGGGCAGG	57.058	42.857	31.82	11.51	40.04	4.85
4884	5300	2.358322	TTTCTTTCGAAAGGGCAGGT	57.642	45.000	31.82	0.00	34.35	4.00
4895	5311	5.946972	TCGAAAGGGCAGGTTTATCATTTTA	59.053	36.000	0.00	0.00	0.00	1.52
4989	5405	5.621228	CGAGAAAAGAAATGTTCGGAAAGTG	59.379	40.000	0.00	0.00	34.02	3.16
4992	5408	5.576447	AAAGAAATGTTCGGAAAGTGTGT	57.424	34.783	0.00	0.00	34.02	3.72
5025	5441	2.485814	CTCACTGTCTAAAAAGGCTGGC	59.514	50.000	0.00	0.00	0.00	4.85
5082	5498	4.462483	TCCAACCTATTTCAACAATGCCTC	59.538	41.667	0.00	0.00	0.00	4.70
5140	5560	9.912634	ATTTTCATTGACCAATAAACACTGTAG	57.087	29.630	0.00	0.00	0.00	2.74
5313	5733	2.030457	CCGCGTGCCATTTCTAAAGTAG	59.970	50.000	4.92	0.00	0.00	2.57
5315	5735	3.483574	CGCGTGCCATTTCTAAAGTAGTG	60.484	47.826	0.00	0.00	0.00	2.74
5344	5764	4.445385	GCTGGCAAACTCTTTGTAACAATG	59.555	41.667	0.00	0.00	42.56	2.82
5433	5853	5.645067	CACAGAGCATATTTGAAGGACAGAA	59.355	40.000	0.00	0.00	0.00	3.02
5641	6061	2.632377	GAATCAGCGGGATCACTTGAA	58.368	47.619	3.53	0.00	34.28	2.69
5667	6087	6.101650	TGGTGTTATGGATGCTGATACTAG	57.898	41.667	0.00	0.00	0.00	2.57
5674	6094	5.139435	TGGATGCTGATACTAGGAATTCG	57.861	43.478	0.00	0.00	0.00	3.34
5905	6325	6.381133	AGGGAAATGGGAAAATATTCACTGAC	59.619	38.462	0.00	0.00	39.82	3.51
5923	6343	5.006386	ACTGACCATCCAGAAAAAGATGAC	58.994	41.667	1.65	0.00	42.04	3.06
5951	6371	3.863142	GCCAAGAGCTGAAACATGAAT	57.137	42.857	0.00	0.00	38.99	2.57
5952	6372	4.184079	GCCAAGAGCTGAAACATGAATT	57.816	40.909	0.00	0.00	38.99	2.17
5953	6373	4.171754	GCCAAGAGCTGAAACATGAATTC	58.828	43.478	0.00	4.35	38.99	2.17
5954	6374	4.321452	GCCAAGAGCTGAAACATGAATTCA	60.321	41.667	11.26	11.26	38.99	2.57
5985	6405	7.392766	AGGATCACATGGTATTTCCTGATAA	57.607	36.000	0.00	0.00	31.53	1.75
5986	6406	7.815383	AGGATCACATGGTATTTCCTGATAAA	58.185	34.615	0.00	0.00	31.53	1.40
5987	6407	8.281531	AGGATCACATGGTATTTCCTGATAAAA	58.718	33.333	0.00	0.00	31.53	1.52
6048	6468	7.458397	TCTTTTTGTCTGGACTACCACAATAT	58.542	34.615	2.38	0.00	41.77	1.28
6085	6505	2.561478	TGCTTTCACTAACCCAGGAC	57.439	50.000	0.00	0.00	0.00	3.85
6097	6517	0.962356	CCCAGGACGCTTGCAAATCT	60.962	55.000	0.00	0.00	0.00	2.40
6105	6525	1.725931	CGCTTGCAAATCTGACGAACC	60.726	52.381	0.00	0.00	0.00	3.62
6108	6528	0.953471	TGCAAATCTGACGAACCGGG	60.953	55.000	6.32	0.00	0.00	5.73
6109	6529	0.672401	GCAAATCTGACGAACCGGGA	60.672	55.000	6.32	0.00	0.00	5.14
6120	6540	1.263217	CGAACCGGGAACAACTGAAAG	59.737	52.381	6.32	0.00	42.29	2.62
6223	6643	1.807981	CATCGGCGCCGTGTTCTTA	60.808	57.895	44.16	26.72	40.74	2.10
6246	6666	2.324541	AGCTCATCTCAGGTATGGGAC	58.675	52.381	0.00	0.00	39.26	4.46
6261	6681	3.668141	TGGGACCATTGTGAGCATTAT	57.332	42.857	0.00	0.00	0.00	1.28
6266	6686	4.023707	GGACCATTGTGAGCATTATACAGC	60.024	45.833	0.00	0.00	0.00	4.40
6304	6724	7.708752	CAGGACATTACTAGATCTTCTGAAACC	59.291	40.741	0.00	0.00	0.00	3.27
6305	6725	7.400339	AGGACATTACTAGATCTTCTGAAACCA	59.600	37.037	0.00	0.00	0.00	3.67
6306	6726	7.708752	GGACATTACTAGATCTTCTGAAACCAG	59.291	40.741	0.00	0.00	0.00	4.00
6307	6727	8.367660	ACATTACTAGATCTTCTGAAACCAGA	57.632	34.615	0.00	0.00	38.80	3.86
6308	6728	8.474025	ACATTACTAGATCTTCTGAAACCAGAG	58.526	37.037	0.00	0.00	41.27	3.35
6309	6729	5.337578	ACTAGATCTTCTGAAACCAGAGC	57.662	43.478	0.00	0.00	41.27	4.09
6310	6730	3.625649	AGATCTTCTGAAACCAGAGCC	57.374	47.619	0.00	0.00	41.27	4.70
6311	6731	2.093764	AGATCTTCTGAAACCAGAGCCG	60.094	50.000	0.00	0.00	41.27	5.52
6312	6732	1.048601	TCTTCTGAAACCAGAGCCGT	58.951	50.000	0.00	0.00	41.27	5.68
6313	6733	2.244695	TCTTCTGAAACCAGAGCCGTA	58.755	47.619	0.00	0.00	41.27	4.02
6314	6734	2.832129	TCTTCTGAAACCAGAGCCGTAT	59.168	45.455	0.00	0.00	41.27	3.06
6315	6735	2.672961	TCTGAAACCAGAGCCGTATG	57.327	50.000	0.00	0.00	35.88	2.39
6316	6736	1.009829	CTGAAACCAGAGCCGTATGC	58.990	55.000	0.00	0.00	41.71	3.14
6317	6737	0.323302	TGAAACCAGAGCCGTATGCA	59.677	50.000	0.00	0.00	44.83	3.96
6318	6738	1.065491	TGAAACCAGAGCCGTATGCAT	60.065	47.619	3.79	3.79	44.83	3.96
6319	6739	1.599542	GAAACCAGAGCCGTATGCATC	59.400	52.381	0.19	0.00	44.83	3.91
6320	6740	0.833287	AACCAGAGCCGTATGCATCT	59.167	50.000	0.19	0.00	44.83	2.90
6321	6741	0.833287	ACCAGAGCCGTATGCATCTT	59.167	50.000	0.19	0.00	44.83	2.40
6322	6742	1.210478	ACCAGAGCCGTATGCATCTTT	59.790	47.619	0.19	0.00	44.83	2.52
6323	6743	2.292267	CCAGAGCCGTATGCATCTTTT	58.708	47.619	0.19	0.00	44.83	2.27
6324	6744	2.684881	CCAGAGCCGTATGCATCTTTTT	59.315	45.455	0.19	0.00	44.83	1.94
6325	6745	3.488047	CCAGAGCCGTATGCATCTTTTTG	60.488	47.826	0.19	0.00	44.83	2.44
6326	6746	3.374988	CAGAGCCGTATGCATCTTTTTGA	59.625	43.478	0.19	0.00	44.83	2.69
6327	6747	4.036027	CAGAGCCGTATGCATCTTTTTGAT	59.964	41.667	0.19	0.00	44.83	2.57
6336	6756	3.160777	CATCTTTTTGATGCAGAGGCC	57.839	47.619	0.00	0.00	44.96	5.19
6337	6757	1.167851	TCTTTTTGATGCAGAGGCCG	58.832	50.000	0.00	0.00	40.13	6.13
6338	6758	0.171903	CTTTTTGATGCAGAGGCCGG	59.828	55.000	0.00	0.00	40.13	6.13
6339	6759	1.250154	TTTTTGATGCAGAGGCCGGG	61.250	55.000	2.18	0.00	40.13	5.73
6340	6760	3.643595	TTTGATGCAGAGGCCGGGG	62.644	63.158	2.18	0.00	40.13	5.73
6346	6766	3.373565	CAGAGGCCGGGGCAAAAC	61.374	66.667	23.67	10.68	44.11	2.43
6347	6767	4.678743	AGAGGCCGGGGCAAAACC	62.679	66.667	23.67	0.12	44.11	3.27
6358	6778	2.719531	GGCAAAACCCCCTTTTCAAA	57.280	45.000	0.00	0.00	28.85	2.69
6359	6779	3.006112	GGCAAAACCCCCTTTTCAAAA	57.994	42.857	0.00	0.00	28.85	2.44
6360	6780	3.357203	GGCAAAACCCCCTTTTCAAAAA	58.643	40.909	0.00	0.00	28.85	1.94
6387	6807	8.622948	AAAAAGATCTTCTGAAACCGTCTATT	57.377	30.769	8.78	0.00	0.00	1.73
6425	6845	4.017126	GCAAGGGGATAAGCTTTACAACT	58.983	43.478	3.20	0.00	0.00	3.16
6446	6866	6.566197	ACTATTTTGCCTTCACTTTCTGAG	57.434	37.500	0.00	0.00	0.00	3.35
6467	6887	3.862267	AGAAATCAATTCAGAGCGACTCG	59.138	43.478	0.00	0.00	40.72	4.18
6482	6902	4.277239	TCGAGGGCGAACAATGTG	57.723	55.556	0.00	0.00	44.78	3.21
6518	6938	2.109181	GAGGTGTATCCAGGCGGC	59.891	66.667	0.00	0.00	39.02	6.53
6555	6975	1.843851	AGGAGGGACATGCCGAATAAA	59.156	47.619	0.00	0.00	37.63	1.40
6628	7050	2.717580	TGGAGCGTTATATACCAGCG	57.282	50.000	0.00	0.00	0.00	5.18
6757	7179	9.283768	TGTTCATAATTCAGAGCAACTTTCTAA	57.716	29.630	0.00	0.00	0.00	2.10
6799	7221	5.652014	GTCATGGAGGTGAAATATGTCCAAA	59.348	40.000	0.00	0.00	40.65	3.28
6807	7230	9.143631	GAGGTGAAATATGTCCAAATTTTTGAG	57.856	33.333	4.63	0.00	40.55	3.02
6831	7254	3.188895	GCTTTTGCCTACTTTCACTCG	57.811	47.619	0.00	0.00	40.15	4.18
6833	7256	3.003378	GCTTTTGCCTACTTTCACTCGTT	59.997	43.478	0.00	0.00	40.15	3.85
6836	7259	2.750948	TGCCTACTTTCACTCGTTGTC	58.249	47.619	0.00	0.00	0.00	3.18
6884	7327	6.877611	ATACGGTTTTGTCAATTCTGAGTT	57.122	33.333	0.00	0.00	30.14	3.01
6888	7331	4.970003	GGTTTTGTCAATTCTGAGTTGTCG	59.030	41.667	11.89	0.00	30.14	4.35
6901	7344	0.250338	GTTGTCGAGGCCTCCTTTGT	60.250	55.000	27.20	0.00	31.76	2.83
6909	7352	3.947834	CGAGGCCTCCTTTGTTTCATATT	59.052	43.478	27.20	0.00	31.76	1.28
6914	7357	5.885912	GGCCTCCTTTGTTTCATATTGTAGA	59.114	40.000	0.00	0.00	0.00	2.59
6959	7402	8.169977	ACTTGTACAAAATCAGATGTCATGTT	57.830	30.769	10.03	0.00	0.00	2.71
6973	7416	6.660521	AGATGTCATGTTGTGTTGTATGGATT	59.339	34.615	0.00	0.00	0.00	3.01
6978	7421	6.922407	TCATGTTGTGTTGTATGGATTGTTTG	59.078	34.615	0.00	0.00	0.00	2.93
6984	7427	5.465056	GTGTTGTATGGATTGTTTGTTTGGG	59.535	40.000	0.00	0.00	0.00	4.12
6988	7431	2.482494	TGGATTGTTTGTTTGGGGGTT	58.518	42.857	0.00	0.00	0.00	4.11
7038	7481	4.986622	AGCCTTTTTCGTTAATGAGATGC	58.013	39.130	0.00	0.00	0.00	3.91
7058	7501	7.110810	AGATGCCATGTATCTCAAATCCTATG	58.889	38.462	4.38	0.00	29.39	2.23
7083	7526	8.432805	TGAATAGGAATAGGAAAAGAGATGTCC	58.567	37.037	0.00	0.00	0.00	4.02
7084	7527	8.574309	AATAGGAATAGGAAAAGAGATGTCCT	57.426	34.615	0.00	0.00	44.17	3.85
7085	7528	6.899892	AGGAATAGGAAAAGAGATGTCCTT	57.100	37.500	0.00	0.00	42.00	3.36
7086	7529	7.277405	AGGAATAGGAAAAGAGATGTCCTTT	57.723	36.000	0.00	0.00	42.00	3.11
7094	7537	4.437682	AAGAGATGTCCTTTGGTTCACA	57.562	40.909	0.00	0.00	0.00	3.58
7228	7672	7.272144	AGGATTCTACTCCTACAAACCAAAT	57.728	36.000	0.00	0.00	44.04	2.32
7229	7673	8.388656	AGGATTCTACTCCTACAAACCAAATA	57.611	34.615	0.00	0.00	44.04	1.40
7235	7679	9.537852	TCTACTCCTACAAACCAAATAACTCTA	57.462	33.333	0.00	0.00	0.00	2.43
7239	7683	8.857694	TCCTACAAACCAAATAACTCTAAAGG	57.142	34.615	0.00	0.00	0.00	3.11
7240	7684	8.662255	TCCTACAAACCAAATAACTCTAAAGGA	58.338	33.333	0.00	0.00	0.00	3.36
7241	7685	9.462606	CCTACAAACCAAATAACTCTAAAGGAT	57.537	33.333	0.00	0.00	0.00	3.24
7302	7775	7.790823	ACAAAATTTCTCCAAACCAAATGAG	57.209	32.000	0.00	0.00	0.00	2.90
7303	7776	6.767423	ACAAAATTTCTCCAAACCAAATGAGG	59.233	34.615	0.00	0.00	0.00	3.86
7304	7777	4.541973	ATTTCTCCAAACCAAATGAGGC	57.458	40.909	0.00	0.00	0.00	4.70
7351	7824	3.859443	ACATCTTGAGCTGTCTGATGTC	58.141	45.455	12.56	0.00	40.36	3.06
7368	7841	4.929211	TGATGTCTCGGTGTTGATTTGTAG	59.071	41.667	0.00	0.00	0.00	2.74
7370	7843	4.304110	TGTCTCGGTGTTGATTTGTAGAC	58.696	43.478	0.00	0.00	34.18	2.59
7372	7845	4.929808	GTCTCGGTGTTGATTTGTAGACAT	59.070	41.667	0.00	0.00	33.86	3.06
7406	7879	7.926018	AGAATTTTGTATCTTTTGCGAAAAGGT	59.074	29.630	16.28	13.51	46.11	3.50
7452	7926	6.780457	AAGTAGCACATGCCTTATGAAAAT	57.220	33.333	0.00	0.00	43.38	1.82
7455	7929	6.828273	AGTAGCACATGCCTTATGAAAATACA	59.172	34.615	0.00	0.00	43.38	2.29
7488	7962	5.773239	TTTAACACAGTATAGACGCAAGC	57.227	39.130	0.00	0.00	45.62	4.01
7489	7963	3.313012	AACACAGTATAGACGCAAGCA	57.687	42.857	0.00	0.00	45.62	3.91
7490	7964	2.607187	ACACAGTATAGACGCAAGCAC	58.393	47.619	0.00	0.00	45.62	4.40
7491	7965	2.231478	ACACAGTATAGACGCAAGCACT	59.769	45.455	0.00	0.00	45.62	4.40
7492	7966	2.854777	CACAGTATAGACGCAAGCACTC	59.145	50.000	0.00	0.00	45.62	3.51
7493	7967	2.492088	ACAGTATAGACGCAAGCACTCA	59.508	45.455	0.00	0.00	45.62	3.41
7494	7968	3.131223	ACAGTATAGACGCAAGCACTCAT	59.869	43.478	0.00	0.00	45.62	2.90
7495	7969	4.338400	ACAGTATAGACGCAAGCACTCATA	59.662	41.667	0.00	0.00	45.62	2.15
7496	7970	5.010112	ACAGTATAGACGCAAGCACTCATAT	59.990	40.000	0.00	0.00	45.62	1.78
7497	7971	6.206829	ACAGTATAGACGCAAGCACTCATATA	59.793	38.462	0.00	0.00	45.62	0.86
7498	7972	7.094162	ACAGTATAGACGCAAGCACTCATATAT	60.094	37.037	0.00	0.00	45.62	0.86
7499	7973	8.398665	CAGTATAGACGCAAGCACTCATATATA	58.601	37.037	0.00	0.00	45.62	0.86
7500	7974	8.399425	AGTATAGACGCAAGCACTCATATATAC	58.601	37.037	0.00	0.00	45.62	1.47
7501	7975	4.476862	AGACGCAAGCACTCATATATACG	58.523	43.478	0.00	0.00	45.62	3.06
7502	7976	2.987149	ACGCAAGCACTCATATATACGC	59.013	45.455	0.00	0.00	45.62	4.42
7503	7977	2.026860	CGCAAGCACTCATATATACGCG	59.973	50.000	3.53	3.53	0.00	6.01
7504	7978	2.222596	GCAAGCACTCATATATACGCGC	60.223	50.000	5.73	0.00	0.00	6.86
7505	7979	2.986479	CAAGCACTCATATATACGCGCA	59.014	45.455	5.73	0.00	0.00	6.09
7506	7980	3.510388	AGCACTCATATATACGCGCAT	57.490	42.857	5.73	0.00	0.00	4.73
7507	7981	4.632538	AGCACTCATATATACGCGCATA	57.367	40.909	5.73	2.88	0.00	3.14
7508	7982	4.352039	AGCACTCATATATACGCGCATAC	58.648	43.478	5.73	0.00	0.00	2.39
7509	7983	4.102649	GCACTCATATATACGCGCATACA	58.897	43.478	5.73	0.00	0.00	2.29
7510	7984	4.740205	GCACTCATATATACGCGCATACAT	59.260	41.667	5.73	0.00	0.00	2.29
7511	7985	5.232202	GCACTCATATATACGCGCATACATT	59.768	40.000	5.73	0.00	0.00	2.71
7512	7986	6.560433	GCACTCATATATACGCGCATACATTC	60.560	42.308	5.73	0.00	0.00	2.67
7513	7987	6.472163	CACTCATATATACGCGCATACATTCA	59.528	38.462	5.73	0.00	0.00	2.57
7514	7988	6.472486	ACTCATATATACGCGCATACATTCAC	59.528	38.462	5.73	0.00	0.00	3.18
7515	7989	5.746721	TCATATATACGCGCATACATTCACC	59.253	40.000	5.73	0.00	0.00	4.02
7516	7990	1.508632	ATACGCGCATACATTCACCC	58.491	50.000	5.73	0.00	0.00	4.61
7517	7991	0.462375	TACGCGCATACATTCACCCT	59.538	50.000	5.73	0.00	0.00	4.34
7518	7992	0.392461	ACGCGCATACATTCACCCTT	60.392	50.000	5.73	0.00	0.00	3.95
7519	7993	1.134640	ACGCGCATACATTCACCCTTA	60.135	47.619	5.73	0.00	0.00	2.69
7520	7994	2.143122	CGCGCATACATTCACCCTTAT	58.857	47.619	8.75	0.00	0.00	1.73
7521	7995	3.243941	ACGCGCATACATTCACCCTTATA	60.244	43.478	5.73	0.00	0.00	0.98
7522	7996	3.743911	CGCGCATACATTCACCCTTATAA	59.256	43.478	8.75	0.00	0.00	0.98
7523	7997	4.212425	CGCGCATACATTCACCCTTATAAA	59.788	41.667	8.75	0.00	0.00	1.40
7524	7998	5.449304	GCGCATACATTCACCCTTATAAAC	58.551	41.667	0.30	0.00	0.00	2.01
7525	7999	5.675970	CGCATACATTCACCCTTATAAACG	58.324	41.667	0.00	0.00	0.00	3.60
7526	8000	5.449304	GCATACATTCACCCTTATAAACGC	58.551	41.667	0.00	0.00	0.00	4.84
7527	8001	5.008217	GCATACATTCACCCTTATAAACGCA	59.992	40.000	0.00	0.00	0.00	5.24
7528	8002	4.957759	ACATTCACCCTTATAAACGCAC	57.042	40.909	0.00	0.00	0.00	5.34
7529	8003	4.328536	ACATTCACCCTTATAAACGCACA	58.671	39.130	0.00	0.00	0.00	4.57
7530	8004	4.155280	ACATTCACCCTTATAAACGCACAC	59.845	41.667	0.00	0.00	0.00	3.82
7531	8005	3.404224	TCACCCTTATAAACGCACACA	57.596	42.857	0.00	0.00	0.00	3.72
7532	8006	3.068560	TCACCCTTATAAACGCACACAC	58.931	45.455	0.00	0.00	0.00	3.82
7533	8007	2.070783	ACCCTTATAAACGCACACACG	58.929	47.619	0.00	0.00	39.50	4.49

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
22	23	3.307762	GCCCTAGACAACAAAGGTCTCAT	60.308	47.826	0.00	0.00	44.14	2.90
24	25	2.038557	TGCCCTAGACAACAAAGGTCTC	59.961	50.000	0.00	0.00	44.14	3.36
177	178	0.846427	TGGACAGCTCCCAAATCCCT	60.846	55.000	1.99	0.00	35.34	4.20
189	190	1.211969	CAGCAAGTGCATGGACAGC	59.788	57.895	20.21	20.96	45.16	4.40
401	417	1.476074	AATCACACGCACGCTTTTTG	58.524	45.000	0.00	0.00	0.00	2.44
407	423	2.806288	AGAAATAATCACACGCACGC	57.194	45.000	0.00	0.00	0.00	5.34
570	620	1.077265	CAAGTGGCTGGGAATGGGT	59.923	57.895	0.00	0.00	0.00	4.51
618	668	2.355132	GTCTGGATCGACTCGTACACAT	59.645	50.000	0.00	0.00	0.00	3.21
685	735	0.951040	AAAGAAGCTCGAAGTGGCCG	60.951	55.000	0.00	0.00	0.00	6.13
735	785	8.470805	ACAGAGAAACCACACTATCAATACTAG	58.529	37.037	0.00	0.00	0.00	2.57
741	791	6.038161	CACAAACAGAGAAACCACACTATCAA	59.962	38.462	0.00	0.00	0.00	2.57
828	878	5.463724	GCTAACATCTAGGATGCTTGTACAC	59.536	44.000	0.00	0.00	0.00	2.90
865	915	3.077359	GCAGAACTGGCATTGACTAAGT	58.923	45.455	3.99	0.00	0.00	2.24
866	916	3.076621	TGCAGAACTGGCATTGACTAAG	58.923	45.455	3.99	0.00	36.11	2.18
955	1006	3.693578	ACTACGTCCTCCTAAAGTACTGC	59.306	47.826	0.00	0.00	0.00	4.40
957	1008	5.564550	TCAACTACGTCCTCCTAAAGTACT	58.435	41.667	0.00	0.00	0.00	2.73
958	1009	5.675827	GCTCAACTACGTCCTCCTAAAGTAC	60.676	48.000	0.00	0.00	0.00	2.73
999	1050	1.065199	TGCTCAACCTCACCCATCATC	60.065	52.381	0.00	0.00	0.00	2.92
1000	1051	0.994247	TGCTCAACCTCACCCATCAT	59.006	50.000	0.00	0.00	0.00	2.45
1001	1052	0.036732	GTGCTCAACCTCACCCATCA	59.963	55.000	0.00	0.00	0.00	3.07
1053	1104	7.915293	TCTATCGAAAACTTTGCCTATGAAA	57.085	32.000	0.00	0.00	0.00	2.69
1106	1157	2.711711	CAGCACTGCAGTTCCAACT	58.288	52.632	18.94	6.95	40.60	3.16
1133	1184	4.340666	TCAAACATTTACAAAGCAGCAGGA	59.659	37.500	0.00	0.00	0.00	3.86
1275	1346	4.093703	CGGAAAATAAGCGATAACACCACA	59.906	41.667	0.00	0.00	0.00	4.17
1286	1357	7.095982	ACCAAACAAAATTACGGAAAATAAGCG	60.096	33.333	0.00	0.00	0.00	4.68
1291	1362	8.669946	AATCACCAAACAAAATTACGGAAAAT	57.330	26.923	0.00	0.00	0.00	1.82
1294	1365	9.413048	GAATAATCACCAAACAAAATTACGGAA	57.587	29.630	0.00	0.00	0.00	4.30
1312	1384	4.096833	ACCGTACAGTACAGCGAATAATCA	59.903	41.667	11.37	0.00	0.00	2.57
1319	1391	0.606130	TCCACCGTACAGTACAGCGA	60.606	55.000	11.37	0.00	0.00	4.93
1322	1394	2.353406	CCCTTTCCACCGTACAGTACAG	60.353	54.545	11.37	1.84	0.00	2.74
1328	1400	2.299867	GTTACTCCCTTTCCACCGTACA	59.700	50.000	0.00	0.00	0.00	2.90
1335	1407	1.440618	TGCCAGTTACTCCCTTTCCA	58.559	50.000	0.00	0.00	0.00	3.53
1352	1424	4.136796	TGTACATGCCCTAAGATCAATGC	58.863	43.478	0.00	0.00	0.00	3.56
1364	1436	1.967319	ATCGACCATTGTACATGCCC	58.033	50.000	0.00	0.00	0.00	5.36
1365	1437	3.498397	CCTTATCGACCATTGTACATGCC	59.502	47.826	0.00	0.00	0.00	4.40
1366	1438	4.127171	ACCTTATCGACCATTGTACATGC	58.873	43.478	0.00	0.00	0.00	4.06
1367	1439	6.513180	ACTACCTTATCGACCATTGTACATG	58.487	40.000	0.00	0.00	0.00	3.21
1368	1440	6.550108	AGACTACCTTATCGACCATTGTACAT	59.450	38.462	0.00	0.00	0.00	2.29
1370	1442	6.388435	AGACTACCTTATCGACCATTGTAC	57.612	41.667	0.00	0.00	0.00	2.90
1385	1457	9.553064	CATGCAAGATTTAAGATAAGACTACCT	57.447	33.333	0.00	0.00	0.00	3.08
1386	1458	9.331282	ACATGCAAGATTTAAGATAAGACTACC	57.669	33.333	0.00	0.00	0.00	3.18
1400	1472	8.139989	GCCATCTCTAAATTACATGCAAGATTT	58.860	33.333	0.00	0.95	0.00	2.17
1401	1473	7.286087	TGCCATCTCTAAATTACATGCAAGATT	59.714	33.333	0.00	0.00	0.00	2.40
1402	1474	6.774170	TGCCATCTCTAAATTACATGCAAGAT	59.226	34.615	0.00	0.00	0.00	2.40
1403	1475	6.121590	TGCCATCTCTAAATTACATGCAAGA	58.878	36.000	0.00	0.00	0.00	3.02
1404	1476	6.381481	TGCCATCTCTAAATTACATGCAAG	57.619	37.500	0.00	0.00	0.00	4.01
1405	1477	6.772360	TTGCCATCTCTAAATTACATGCAA	57.228	33.333	0.00	0.00	0.00	4.08
1406	1478	6.772360	TTTGCCATCTCTAAATTACATGCA	57.228	33.333	0.00	0.00	0.00	3.96
1429	1501	6.721208	AGATGACCCATTGTAGACATGTTTTT	59.279	34.615	0.00	0.00	0.00	1.94
1430	1502	6.248433	AGATGACCCATTGTAGACATGTTTT	58.752	36.000	0.00	0.00	0.00	2.43
1431	1503	5.819991	AGATGACCCATTGTAGACATGTTT	58.180	37.500	0.00	0.00	0.00	2.83
1432	1504	5.190528	AGAGATGACCCATTGTAGACATGTT	59.809	40.000	0.00	0.00	0.00	2.71
1433	1505	4.718774	AGAGATGACCCATTGTAGACATGT	59.281	41.667	0.00	0.00	0.00	3.21
1434	1506	5.287674	AGAGATGACCCATTGTAGACATG	57.712	43.478	0.00	0.00	0.00	3.21
1435	1507	5.965033	AAGAGATGACCCATTGTAGACAT	57.035	39.130	0.00	0.00	0.00	3.06
1436	1508	6.351881	GGTTAAGAGATGACCCATTGTAGACA	60.352	42.308	0.00	0.00	31.50	3.41
1437	1509	6.049790	GGTTAAGAGATGACCCATTGTAGAC	58.950	44.000	0.00	0.00	31.50	2.59
1438	1510	5.964477	AGGTTAAGAGATGACCCATTGTAGA	59.036	40.000	0.00	0.00	38.45	2.59
1439	1511	6.240549	AGGTTAAGAGATGACCCATTGTAG	57.759	41.667	0.00	0.00	38.45	2.74
1440	1512	6.636454	AAGGTTAAGAGATGACCCATTGTA	57.364	37.500	0.00	0.00	38.45	2.41
1441	1513	5.520748	AAGGTTAAGAGATGACCCATTGT	57.479	39.130	0.00	0.00	38.45	2.71
1442	1514	7.512992	AGATAAGGTTAAGAGATGACCCATTG	58.487	38.462	0.00	0.00	38.45	2.82
1443	1515	7.698163	AGATAAGGTTAAGAGATGACCCATT	57.302	36.000	0.00	0.00	38.45	3.16
1444	1516	7.348274	TGAAGATAAGGTTAAGAGATGACCCAT	59.652	37.037	0.00	0.00	38.45	4.00
1445	1517	6.672218	TGAAGATAAGGTTAAGAGATGACCCA	59.328	38.462	0.00	0.00	38.45	4.51
1446	1518	7.125792	TGAAGATAAGGTTAAGAGATGACCC	57.874	40.000	0.00	0.00	38.45	4.46
1485	1557	9.669353	GCACAATATGTCTCACCATATTTTTAG	57.331	33.333	4.17	0.00	42.54	1.85
1486	1558	9.407380	AGCACAATATGTCTCACCATATTTTTA	57.593	29.630	4.17	0.00	42.54	1.52
1487	1559	8.297470	AGCACAATATGTCTCACCATATTTTT	57.703	30.769	4.17	0.00	42.54	1.94
1488	1560	7.886629	AGCACAATATGTCTCACCATATTTT	57.113	32.000	4.17	0.00	42.54	1.82
1489	1561	8.840321	GTTAGCACAATATGTCTCACCATATTT	58.160	33.333	4.17	0.00	42.54	1.40
1490	1562	7.992608	TGTTAGCACAATATGTCTCACCATATT	59.007	33.333	0.00	0.00	44.78	1.28
1491	1563	7.508687	TGTTAGCACAATATGTCTCACCATAT	58.491	34.615	0.00	0.00	39.20	1.78
1492	1564	6.883744	TGTTAGCACAATATGTCTCACCATA	58.116	36.000	0.00	0.00	0.00	2.74
1493	1565	5.744171	TGTTAGCACAATATGTCTCACCAT	58.256	37.500	0.00	0.00	0.00	3.55
1494	1566	5.046663	TCTGTTAGCACAATATGTCTCACCA	60.047	40.000	0.00	0.00	30.36	4.17
1495	1567	5.419542	TCTGTTAGCACAATATGTCTCACC	58.580	41.667	0.00	0.00	30.36	4.02
1496	1568	6.758416	TGATCTGTTAGCACAATATGTCTCAC	59.242	38.462	0.00	0.00	30.36	3.51
1497	1569	6.877236	TGATCTGTTAGCACAATATGTCTCA	58.123	36.000	0.00	0.00	30.36	3.27
1498	1570	7.871973	AGATGATCTGTTAGCACAATATGTCTC	59.128	37.037	0.00	0.00	30.36	3.36
1499	1571	7.733969	AGATGATCTGTTAGCACAATATGTCT	58.266	34.615	0.00	0.00	30.36	3.41
1500	1572	7.871973	AGAGATGATCTGTTAGCACAATATGTC	59.128	37.037	0.00	0.00	36.69	3.06
1501	1573	7.733969	AGAGATGATCTGTTAGCACAATATGT	58.266	34.615	0.00	0.00	36.69	2.29
1502	1574	8.496751	CAAGAGATGATCTGTTAGCACAATATG	58.503	37.037	4.40	0.00	38.67	1.78
1503	1575	7.172875	GCAAGAGATGATCTGTTAGCACAATAT	59.827	37.037	16.07	0.00	38.67	1.28
1504	1576	6.481313	GCAAGAGATGATCTGTTAGCACAATA	59.519	38.462	16.07	0.00	38.67	1.90
1505	1577	5.296283	GCAAGAGATGATCTGTTAGCACAAT	59.704	40.000	16.07	0.00	38.67	2.71
1506	1578	4.633126	GCAAGAGATGATCTGTTAGCACAA	59.367	41.667	16.07	0.00	38.67	3.33
1507	1579	4.186926	GCAAGAGATGATCTGTTAGCACA	58.813	43.478	16.07	0.00	38.67	4.57
1508	1580	3.559242	GGCAAGAGATGATCTGTTAGCAC	59.441	47.826	19.78	11.04	38.67	4.40
1509	1581	3.453717	AGGCAAGAGATGATCTGTTAGCA	59.546	43.478	19.78	0.00	38.67	3.49
1510	1582	4.070630	AGGCAAGAGATGATCTGTTAGC	57.929	45.455	4.40	10.39	38.67	3.09
1511	1583	5.916318	AGAAGGCAAGAGATGATCTGTTAG	58.084	41.667	4.40	1.76	38.67	2.34
1512	1584	5.660417	AGAGAAGGCAAGAGATGATCTGTTA	59.340	40.000	4.40	0.00	38.67	2.41
1513	1585	4.470664	AGAGAAGGCAAGAGATGATCTGTT	59.529	41.667	0.00	0.00	38.67	3.16
1514	1586	4.032310	AGAGAAGGCAAGAGATGATCTGT	58.968	43.478	0.00	0.00	38.67	3.41
1515	1587	4.675976	AGAGAAGGCAAGAGATGATCTG	57.324	45.455	0.00	0.00	38.67	2.90
1516	1588	6.805016	TTAAGAGAAGGCAAGAGATGATCT	57.195	37.500	0.00	0.00	41.27	2.75
1517	1589	9.553064	TTAATTAAGAGAAGGCAAGAGATGATC	57.447	33.333	0.00	0.00	0.00	2.92
1518	1590	9.558396	CTTAATTAAGAGAAGGCAAGAGATGAT	57.442	33.333	18.69	0.00	35.33	2.45
1519	1591	8.762645	TCTTAATTAAGAGAAGGCAAGAGATGA	58.237	33.333	21.46	0.00	37.40	2.92
1520	1592	8.954950	TCTTAATTAAGAGAAGGCAAGAGATG	57.045	34.615	21.46	0.00	37.40	2.90
1534	1606	8.779354	GAAGGCTTGTCTTCTCTTAATTAAGA	57.221	34.615	23.26	23.26	39.84	2.10
1546	1618	7.552330	AGAAATCATAAGAGAAGGCTTGTCTTC	59.448	37.037	34.48	22.04	41.71	2.87
1547	1619	7.401246	AGAAATCATAAGAGAAGGCTTGTCTT	58.599	34.615	33.39	33.39	44.39	3.01
1548	1620	6.956497	AGAAATCATAAGAGAAGGCTTGTCT	58.044	36.000	20.19	20.19	34.32	3.41
1549	1621	7.047271	AGAGAAATCATAAGAGAAGGCTTGTC	58.953	38.462	16.04	16.04	0.00	3.18
1550	1622	6.956497	AGAGAAATCATAAGAGAAGGCTTGT	58.044	36.000	3.46	0.00	0.00	3.16
1551	1623	7.274447	AGAGAGAAATCATAAGAGAAGGCTTG	58.726	38.462	3.46	0.00	0.00	4.01
1552	1624	7.418942	GGAGAGAGAAATCATAAGAGAAGGCTT	60.419	40.741	0.00	0.00	0.00	4.35
1553	1625	6.041979	GGAGAGAGAAATCATAAGAGAAGGCT	59.958	42.308	0.00	0.00	0.00	4.58
1554	1626	6.041979	AGGAGAGAGAAATCATAAGAGAAGGC	59.958	42.308	0.00	0.00	0.00	4.35
1555	1627	7.255942	GGAGGAGAGAGAAATCATAAGAGAAGG	60.256	44.444	0.00	0.00	0.00	3.46
1556	1628	7.287466	TGGAGGAGAGAGAAATCATAAGAGAAG	59.713	40.741	0.00	0.00	0.00	2.85
1557	1629	7.069331	GTGGAGGAGAGAGAAATCATAAGAGAA	59.931	40.741	0.00	0.00	0.00	2.87
1558	1630	6.549364	GTGGAGGAGAGAGAAATCATAAGAGA	59.451	42.308	0.00	0.00	0.00	3.10
1559	1631	6.239289	GGTGGAGGAGAGAGAAATCATAAGAG	60.239	46.154	0.00	0.00	0.00	2.85
1560	1632	5.600484	GGTGGAGGAGAGAGAAATCATAAGA	59.400	44.000	0.00	0.00	0.00	2.10
1561	1633	5.602145	AGGTGGAGGAGAGAGAAATCATAAG	59.398	44.000	0.00	0.00	0.00	1.73
1562	1634	5.533112	AGGTGGAGGAGAGAGAAATCATAA	58.467	41.667	0.00	0.00	0.00	1.90
1563	1635	5.144100	GAGGTGGAGGAGAGAGAAATCATA	58.856	45.833	0.00	0.00	0.00	2.15
1564	1636	3.966665	GAGGTGGAGGAGAGAGAAATCAT	59.033	47.826	0.00	0.00	0.00	2.45
1565	1637	3.245766	TGAGGTGGAGGAGAGAGAAATCA	60.246	47.826	0.00	0.00	0.00	2.57
1566	1638	3.370104	TGAGGTGGAGGAGAGAGAAATC	58.630	50.000	0.00	0.00	0.00	2.17
1567	1639	3.481559	TGAGGTGGAGGAGAGAGAAAT	57.518	47.619	0.00	0.00	0.00	2.17
1568	1640	3.245766	TGATGAGGTGGAGGAGAGAGAAA	60.246	47.826	0.00	0.00	0.00	2.52
1569	1641	2.313041	TGATGAGGTGGAGGAGAGAGAA	59.687	50.000	0.00	0.00	0.00	2.87
1570	1642	1.925959	TGATGAGGTGGAGGAGAGAGA	59.074	52.381	0.00	0.00	0.00	3.10
1571	1643	2.450867	TGATGAGGTGGAGGAGAGAG	57.549	55.000	0.00	0.00	0.00	3.20
1572	1644	3.411454	AATGATGAGGTGGAGGAGAGA	57.589	47.619	0.00	0.00	0.00	3.10
1573	1645	5.279910	GGATAAATGATGAGGTGGAGGAGAG	60.280	48.000	0.00	0.00	0.00	3.20
1574	1646	4.594920	GGATAAATGATGAGGTGGAGGAGA	59.405	45.833	0.00	0.00	0.00	3.71
1575	1647	4.596643	AGGATAAATGATGAGGTGGAGGAG	59.403	45.833	0.00	0.00	0.00	3.69
1576	1648	4.570926	AGGATAAATGATGAGGTGGAGGA	58.429	43.478	0.00	0.00	0.00	3.71
1577	1649	4.989875	AGGATAAATGATGAGGTGGAGG	57.010	45.455	0.00	0.00	0.00	4.30
1578	1650	5.011125	ACGTAGGATAAATGATGAGGTGGAG	59.989	44.000	0.00	0.00	0.00	3.86
1579	1651	4.899457	ACGTAGGATAAATGATGAGGTGGA	59.101	41.667	0.00	0.00	0.00	4.02
1580	1652	4.991056	CACGTAGGATAAATGATGAGGTGG	59.009	45.833	0.00	0.00	0.00	4.61
1581	1653	4.991056	CCACGTAGGATAAATGATGAGGTG	59.009	45.833	0.00	0.00	41.22	4.00
1582	1654	4.503296	GCCACGTAGGATAAATGATGAGGT	60.503	45.833	8.04	0.00	41.22	3.85
1583	1655	3.997021	GCCACGTAGGATAAATGATGAGG	59.003	47.826	8.04	0.00	41.22	3.86
1584	1656	4.631131	TGCCACGTAGGATAAATGATGAG	58.369	43.478	8.04	0.00	41.22	2.90
1585	1657	4.681074	TGCCACGTAGGATAAATGATGA	57.319	40.909	8.04	0.00	41.22	2.92
1586	1658	5.692814	CAATGCCACGTAGGATAAATGATG	58.307	41.667	8.04	0.00	41.22	3.07
1587	1659	4.216257	GCAATGCCACGTAGGATAAATGAT	59.784	41.667	8.04	0.00	41.22	2.45
1588	1660	3.563808	GCAATGCCACGTAGGATAAATGA	59.436	43.478	8.04	0.00	41.22	2.57
1589	1661	3.565482	AGCAATGCCACGTAGGATAAATG	59.435	43.478	0.00	0.00	41.22	2.32
1590	1662	3.820557	AGCAATGCCACGTAGGATAAAT	58.179	40.909	0.00	0.00	41.22	1.40
1591	1663	3.275617	AGCAATGCCACGTAGGATAAA	57.724	42.857	0.00	0.00	41.22	1.40
1592	1664	4.100344	TCTTAGCAATGCCACGTAGGATAA	59.900	41.667	0.00	0.00	41.22	1.75
1593	1665	3.639561	TCTTAGCAATGCCACGTAGGATA	59.360	43.478	0.00	0.00	41.22	2.59
1594	1666	2.434336	TCTTAGCAATGCCACGTAGGAT	59.566	45.455	0.00	0.00	41.22	3.24
1595	1667	1.828595	TCTTAGCAATGCCACGTAGGA	59.171	47.619	0.00	0.00	41.22	2.94
1596	1668	2.309528	TCTTAGCAATGCCACGTAGG	57.690	50.000	0.00	0.00	41.84	3.18
1597	1669	4.871513	TCTATCTTAGCAATGCCACGTAG	58.128	43.478	0.00	0.00	0.00	3.51
1598	1670	4.929819	TCTATCTTAGCAATGCCACGTA	57.070	40.909	0.00	0.00	0.00	3.57
1599	1671	3.819564	TCTATCTTAGCAATGCCACGT	57.180	42.857	0.00	0.00	0.00	4.49
1600	1672	3.248602	GGTTCTATCTTAGCAATGCCACG	59.751	47.826	0.00	0.00	0.00	4.94
1601	1673	4.199310	TGGTTCTATCTTAGCAATGCCAC	58.801	43.478	0.00	0.00	0.00	5.01
1602	1674	4.502105	TGGTTCTATCTTAGCAATGCCA	57.498	40.909	0.00	0.00	0.00	4.92
1603	1675	5.300286	ACAATGGTTCTATCTTAGCAATGCC	59.700	40.000	0.00	0.00	0.00	4.40
1604	1676	6.382869	ACAATGGTTCTATCTTAGCAATGC	57.617	37.500	0.00	0.00	0.00	3.56
1605	1677	8.437360	TGTACAATGGTTCTATCTTAGCAATG	57.563	34.615	0.00	0.00	0.00	2.82
1606	1678	9.060347	CATGTACAATGGTTCTATCTTAGCAAT	57.940	33.333	0.00	0.00	0.00	3.56
1607	1679	7.012327	GCATGTACAATGGTTCTATCTTAGCAA	59.988	37.037	0.00	0.00	0.00	3.91
1608	1680	6.483307	GCATGTACAATGGTTCTATCTTAGCA	59.517	38.462	0.00	0.00	0.00	3.49
1609	1681	6.073003	GGCATGTACAATGGTTCTATCTTAGC	60.073	42.308	0.00	0.00	0.00	3.09
1610	1682	6.428159	GGGCATGTACAATGGTTCTATCTTAG	59.572	42.308	0.00	0.00	0.00	2.18
1611	1683	6.101150	AGGGCATGTACAATGGTTCTATCTTA	59.899	38.462	0.00	0.00	0.00	2.10
1612	1684	5.103940	AGGGCATGTACAATGGTTCTATCTT	60.104	40.000	0.00	0.00	0.00	2.40
1613	1685	4.413520	AGGGCATGTACAATGGTTCTATCT	59.586	41.667	0.00	0.00	0.00	1.98
1614	1686	4.718961	AGGGCATGTACAATGGTTCTATC	58.281	43.478	0.00	0.00	0.00	2.08
1615	1687	4.796110	AGGGCATGTACAATGGTTCTAT	57.204	40.909	0.00	0.00	0.00	1.98
1616	1688	4.584638	AAGGGCATGTACAATGGTTCTA	57.415	40.909	0.00	0.00	0.00	2.10
1617	1689	3.456380	AAGGGCATGTACAATGGTTCT	57.544	42.857	0.00	0.00	0.00	3.01
1618	1690	3.066760	GCTAAGGGCATGTACAATGGTTC	59.933	47.826	0.00	0.00	41.35	3.62
1619	1691	3.023832	GCTAAGGGCATGTACAATGGTT	58.976	45.455	0.00	0.00	41.35	3.67
1620	1692	2.654863	GCTAAGGGCATGTACAATGGT	58.345	47.619	0.00	0.00	41.35	3.55
1632	1704	2.284263	GCAAACAGAATGCTAAGGGC	57.716	50.000	0.00	0.00	42.53	5.19
1670	1742	4.065789	GGCAGGTAATACAGTTAGCATCC	58.934	47.826	0.00	0.00	0.00	3.51
1682	1755	3.589735	TCCAGTTTTCAGGGCAGGTAATA	59.410	43.478	0.00	0.00	0.00	0.98
1724	1798	9.669353	CATGTGCAAGTTAATCATAGTAAATCC	57.331	33.333	0.00	0.00	0.00	3.01
1790	1867	7.814642	AGGATTTAACCGATATAGTACTGTCG	58.185	38.462	5.39	12.17	34.73	4.35
1811	1891	3.068307	GCACACTCTACATACGGAAGGAT	59.932	47.826	0.00	0.00	32.07	3.24
1842	1924	6.009115	ACTCCACCAAAATATTCAACGAAC	57.991	37.500	0.00	0.00	0.00	3.95
1856	1938	3.053544	TCACCCAAAGTTTACTCCACCAA	60.054	43.478	0.00	0.00	0.00	3.67
1857	1939	2.510382	TCACCCAAAGTTTACTCCACCA	59.490	45.455	0.00	0.00	0.00	4.17
1858	1940	3.217681	TCACCCAAAGTTTACTCCACC	57.782	47.619	0.00	0.00	0.00	4.61
1930	2072	6.183360	CCTTCGCCATTGGGATTAGTATTTTT	60.183	38.462	4.53	0.00	35.59	1.94
1960	2116	1.303236	CCGAAATCCAGTGGTGGCA	60.303	57.895	9.54	0.00	44.60	4.92
1997	2153	0.735287	GTCAAAGGTCCCGAGTACGC	60.735	60.000	0.00	0.00	38.29	4.42
2006	2162	0.398318	AGTCTGGCTGTCAAAGGTCC	59.602	55.000	0.00	0.00	0.00	4.46
2023	2179	2.117156	ACGTACGGCCGCAGATAGT	61.117	57.895	28.58	14.16	0.00	2.12
2091	2251	2.734591	GAGCACGGTGTCCTGTGA	59.265	61.111	10.24	0.00	38.36	3.58
2107	2277	2.934553	CAGACTGGTAGACGACATACGA	59.065	50.000	0.00	0.00	45.77	3.43
2108	2278	6.417492	AGTACAGACTGGTAGACGACATACG	61.417	48.000	7.51	0.00	40.46	3.06
2140	2310	1.203523	GTAGCACACTCCAGAGTCCAG	59.796	57.143	0.00	0.00	40.20	3.86
2141	2311	1.203063	AGTAGCACACTCCAGAGTCCA	60.203	52.381	0.00	0.00	40.20	4.02
2142	2312	1.474879	GAGTAGCACACTCCAGAGTCC	59.525	57.143	7.13	0.00	46.94	3.85
2143	2313	2.931512	GAGTAGCACACTCCAGAGTC	57.068	55.000	7.13	0.00	46.94	3.36
2176	2346	1.655885	CGTATCGTATGGCCACGGA	59.344	57.895	8.16	6.05	42.19	4.69
2179	2349	1.671850	CCATCCGTATCGTATGGCCAC	60.672	57.143	8.16	0.00	34.19	5.01
2282	2452	1.508545	CGTCTGGCTCATCACGAGT	59.491	57.895	0.00	0.00	44.33	4.18
2318	2494	4.622650	TTTTACGGTGCGGGCGGT	62.623	61.111	0.00	0.00	0.00	5.68
2323	2499	0.728542	GTATGGGTTTTACGGTGCGG	59.271	55.000	0.00	0.00	0.00	5.69
2324	2500	0.728542	GGTATGGGTTTTACGGTGCG	59.271	55.000	0.00	0.00	0.00	5.34
2325	2501	1.097232	GGGTATGGGTTTTACGGTGC	58.903	55.000	0.00	0.00	0.00	5.01
2326	2502	1.371595	CGGGTATGGGTTTTACGGTG	58.628	55.000	0.00	0.00	0.00	4.94
2327	2503	0.252761	CCGGGTATGGGTTTTACGGT	59.747	55.000	0.00	0.00	35.47	4.83
2328	2504	1.096967	GCCGGGTATGGGTTTTACGG	61.097	60.000	2.18	0.00	42.47	4.02
2329	2505	1.096967	GGCCGGGTATGGGTTTTACG	61.097	60.000	2.18	0.00	0.00	3.18
2330	2506	0.752743	GGGCCGGGTATGGGTTTTAC	60.753	60.000	2.18	0.00	0.00	2.01
2352	2528	4.100084	TGGCGTGCTCCATCCAGG	62.100	66.667	0.00	0.00	39.47	4.45
2354	2530	4.783621	GCTGGCGTGCTCCATCCA	62.784	66.667	0.00	0.00	35.22	3.41
2372	2548	1.296715	CACTTCCGAGACAAGGGGG	59.703	63.158	0.00	0.00	0.00	5.40
2373	2549	0.320771	CACACTTCCGAGACAAGGGG	60.321	60.000	0.00	0.00	0.00	4.79
2375	2551	1.284982	CGCACACTTCCGAGACAAGG	61.285	60.000	0.00	0.00	0.00	3.61
2376	2552	0.597637	ACGCACACTTCCGAGACAAG	60.598	55.000	0.00	0.00	0.00	3.16
2377	2553	0.874175	CACGCACACTTCCGAGACAA	60.874	55.000	0.00	0.00	0.00	3.18
2378	2554	1.299850	CACGCACACTTCCGAGACA	60.300	57.895	0.00	0.00	0.00	3.41
2379	2555	2.658707	GCACGCACACTTCCGAGAC	61.659	63.158	0.00	0.00	0.00	3.36
2380	2556	2.355837	GCACGCACACTTCCGAGA	60.356	61.111	0.00	0.00	0.00	4.04
2382	2558	2.964925	GTGCACGCACACTTCCGA	60.965	61.111	17.03	0.00	45.53	4.55
2383	2559	4.354212	CGTGCACGCACACTTCCG	62.354	66.667	28.16	0.00	46.47	4.30
2384	2560	2.819552	AACGTGCACGCACACTTCC	61.820	57.895	37.35	0.00	46.47	3.46
2385	2561	1.651132	CAACGTGCACGCACACTTC	60.651	57.895	37.35	0.00	46.47	3.01
2386	2562	2.403186	CAACGTGCACGCACACTT	59.597	55.556	37.35	21.60	46.47	3.16
2387	2563	4.236416	GCAACGTGCACGCACACT	62.236	61.111	37.35	16.56	46.47	3.55
2397	2573	1.063811	TGTGTGTGCATGCAACGTG	59.936	52.632	24.58	0.00	0.00	4.49
2398	2574	1.063972	GTGTGTGTGCATGCAACGT	59.936	52.632	24.58	0.00	0.00	3.99
2399	2575	1.658102	GGTGTGTGTGCATGCAACG	60.658	57.895	24.58	0.00	0.00	4.10
2400	2576	0.595567	CAGGTGTGTGTGCATGCAAC	60.596	55.000	24.58	21.45	0.00	4.17
2401	2577	1.734748	CAGGTGTGTGTGCATGCAA	59.265	52.632	24.58	10.26	0.00	4.08
2403	2579	2.646719	CCAGGTGTGTGTGCATGC	59.353	61.111	11.82	11.82	0.00	4.06
2404	2580	1.859427	GAGCCAGGTGTGTGTGCATG	61.859	60.000	0.00	0.00	0.00	4.06
2405	2581	1.601759	GAGCCAGGTGTGTGTGCAT	60.602	57.895	0.00	0.00	0.00	3.96
2509	2713	7.201626	CGTAAATCACTCTACTGTACTACTGCT	60.202	40.741	0.00	0.00	0.00	4.24
2511	2715	6.906143	GCGTAAATCACTCTACTGTACTACTG	59.094	42.308	0.00	0.00	0.00	2.74
2512	2716	6.238049	CGCGTAAATCACTCTACTGTACTACT	60.238	42.308	0.00	0.00	0.00	2.57
2513	2717	5.900789	CGCGTAAATCACTCTACTGTACTAC	59.099	44.000	0.00	0.00	0.00	2.73
2514	2718	5.503031	GCGCGTAAATCACTCTACTGTACTA	60.503	44.000	8.43	0.00	0.00	1.82
2518	2722	2.527100	GCGCGTAAATCACTCTACTGT	58.473	47.619	8.43	0.00	0.00	3.55
2519	2723	1.513178	CGCGCGTAAATCACTCTACTG	59.487	52.381	24.19	0.00	0.00	2.74
2520	2724	1.533338	CCGCGCGTAAATCACTCTACT	60.533	52.381	29.95	0.00	0.00	2.57
2521	2725	0.844503	CCGCGCGTAAATCACTCTAC	59.155	55.000	29.95	0.00	0.00	2.59
2522	2726	0.248743	CCCGCGCGTAAATCACTCTA	60.249	55.000	29.95	0.00	0.00	2.43
2523	2727	1.518572	CCCGCGCGTAAATCACTCT	60.519	57.895	29.95	0.00	0.00	3.24
2524	2728	2.522638	CCCCGCGCGTAAATCACTC	61.523	63.158	29.95	0.00	0.00	3.51
2634	2860	1.154150	GCCGCTACTTGCTTGCTTG	60.154	57.895	0.00	0.00	40.11	4.01
2670	2896	2.405594	CGCGTCCCTCGAGAAGAG	59.594	66.667	15.71	3.77	46.44	2.85
2671	2897	3.812019	GCGCGTCCCTCGAGAAGA	61.812	66.667	15.71	7.57	41.61	2.87
2696	2970	1.660560	GATGGTGATGGTGCTGGTGC	61.661	60.000	0.00	0.00	40.20	5.01
2697	2971	0.322726	TGATGGTGATGGTGCTGGTG	60.323	55.000	0.00	0.00	0.00	4.17
2698	2972	0.322816	GTGATGGTGATGGTGCTGGT	60.323	55.000	0.00	0.00	0.00	4.00
2699	2973	1.033746	GGTGATGGTGATGGTGCTGG	61.034	60.000	0.00	0.00	0.00	4.85
2700	2974	0.322726	TGGTGATGGTGATGGTGCTG	60.323	55.000	0.00	0.00	0.00	4.41
2701	2975	0.627451	ATGGTGATGGTGATGGTGCT	59.373	50.000	0.00	0.00	0.00	4.40
2702	2976	1.027357	GATGGTGATGGTGATGGTGC	58.973	55.000	0.00	0.00	0.00	5.01
2703	2977	1.302366	CGATGGTGATGGTGATGGTG	58.698	55.000	0.00	0.00	0.00	4.17
2704	2978	0.464373	GCGATGGTGATGGTGATGGT	60.464	55.000	0.00	0.00	0.00	3.55
2705	2979	1.168407	GGCGATGGTGATGGTGATGG	61.168	60.000	0.00	0.00	0.00	3.51
2706	2980	0.464193	TGGCGATGGTGATGGTGATG	60.464	55.000	0.00	0.00	0.00	3.07
2707	2981	0.475475	ATGGCGATGGTGATGGTGAT	59.525	50.000	0.00	0.00	0.00	3.06
2708	2982	0.464193	CATGGCGATGGTGATGGTGA	60.464	55.000	0.00	0.00	0.00	4.02
2709	2983	0.464193	TCATGGCGATGGTGATGGTG	60.464	55.000	8.98	0.00	0.00	4.17
2710	2984	0.179037	CTCATGGCGATGGTGATGGT	60.179	55.000	8.98	0.00	0.00	3.55
2711	2985	0.887836	CCTCATGGCGATGGTGATGG	60.888	60.000	8.98	0.97	0.00	3.51
2712	2986	0.107268	TCCTCATGGCGATGGTGATG	59.893	55.000	8.98	0.00	0.00	3.07
2713	2987	0.395686	CTCCTCATGGCGATGGTGAT	59.604	55.000	8.98	0.00	0.00	3.06
2716	2990	2.446848	CCCTCCTCATGGCGATGGT	61.447	63.158	8.98	0.00	0.00	3.55
2841	3125	3.535629	CTGGCCGACTGACCTGCAA	62.536	63.158	0.00	0.00	0.00	4.08
2854	3138	2.600470	GGTGGGTTTGGACTGGCC	60.600	66.667	0.00	0.00	37.10	5.36
2856	3140	0.889186	CGAAGGTGGGTTTGGACTGG	60.889	60.000	0.00	0.00	0.00	4.00
2857	3141	1.515521	GCGAAGGTGGGTTTGGACTG	61.516	60.000	0.00	0.00	0.00	3.51
2858	3142	1.228154	GCGAAGGTGGGTTTGGACT	60.228	57.895	0.00	0.00	0.00	3.85
2859	3143	2.265904	GGCGAAGGTGGGTTTGGAC	61.266	63.158	0.00	0.00	0.00	4.02
2860	3144	2.114411	GGCGAAGGTGGGTTTGGA	59.886	61.111	0.00	0.00	0.00	3.53
2861	3145	1.805428	CTTGGCGAAGGTGGGTTTGG	61.805	60.000	0.00	0.00	0.00	3.28
2863	3147	0.475044	TACTTGGCGAAGGTGGGTTT	59.525	50.000	13.38	0.00	32.95	3.27
2866	3150	0.899720	TAGTACTTGGCGAAGGTGGG	59.100	55.000	13.38	0.00	32.95	4.61
2879	3163	8.341173	CGAGTGGATAAAAATCGTAGTAGTACT	58.659	37.037	8.14	8.14	0.00	2.73
2880	3164	7.112705	GCGAGTGGATAAAAATCGTAGTAGTAC	59.887	40.741	0.00	0.00	35.87	2.73
2882	3166	5.975939	GCGAGTGGATAAAAATCGTAGTAGT	59.024	40.000	0.00	0.00	35.87	2.73
2884	3168	5.284079	GGCGAGTGGATAAAAATCGTAGTA	58.716	41.667	0.00	0.00	35.87	1.82
2889	3173	1.332904	GCGGCGAGTGGATAAAAATCG	60.333	52.381	12.98	0.00	36.51	3.34
2895	3179	2.499205	CAGGCGGCGAGTGGATAA	59.501	61.111	12.98	0.00	0.00	1.75
2896	3180	3.536917	CCAGGCGGCGAGTGGATA	61.537	66.667	19.85	0.00	32.60	2.59
2910	3194	4.430765	CCCCGACGGTCGAACCAG	62.431	72.222	30.33	13.68	43.74	4.00
2911	3195	4.972733	TCCCCGACGGTCGAACCA	62.973	66.667	30.33	9.42	43.74	3.67
2912	3196	4.125695	CTCCCCGACGGTCGAACC	62.126	72.222	30.33	0.00	43.74	3.62
2924	3208	3.090532	ATTGACCCTCGGCTCCCC	61.091	66.667	0.00	0.00	0.00	4.81
2925	3209	2.190578	CATTGACCCTCGGCTCCC	59.809	66.667	0.00	0.00	0.00	4.30
2926	3210	1.910580	TTCCATTGACCCTCGGCTCC	61.911	60.000	0.00	0.00	0.00	4.70
2927	3211	0.744771	GTTCCATTGACCCTCGGCTC	60.745	60.000	0.00	0.00	0.00	4.70
2928	3212	1.299976	GTTCCATTGACCCTCGGCT	59.700	57.895	0.00	0.00	0.00	5.52
2929	3213	1.002624	TGTTCCATTGACCCTCGGC	60.003	57.895	0.00	0.00	0.00	5.54
2930	3214	0.324943	ACTGTTCCATTGACCCTCGG	59.675	55.000	0.00	0.00	0.00	4.63
2931	3215	2.233922	ACTACTGTTCCATTGACCCTCG	59.766	50.000	0.00	0.00	0.00	4.63
2932	3216	3.600388	CACTACTGTTCCATTGACCCTC	58.400	50.000	0.00	0.00	0.00	4.30
2933	3217	2.290323	GCACTACTGTTCCATTGACCCT	60.290	50.000	0.00	0.00	0.00	4.34
2934	3218	2.084546	GCACTACTGTTCCATTGACCC	58.915	52.381	0.00	0.00	0.00	4.46
2935	3219	2.484264	GTGCACTACTGTTCCATTGACC	59.516	50.000	10.32	0.00	0.00	4.02
2936	3220	3.403038	AGTGCACTACTGTTCCATTGAC	58.597	45.455	20.16	0.00	38.49	3.18
2937	3221	3.324846	AGAGTGCACTACTGTTCCATTGA	59.675	43.478	21.73	0.00	40.53	2.57
2950	3234	3.386237	GCCGGGAGAGAGTGCACT	61.386	66.667	21.88	21.88	0.00	4.40
2951	3235	4.803426	CGCCGGGAGAGAGTGCAC	62.803	72.222	9.40	9.40	0.00	4.57
2954	3238	4.803426	GTGCGCCGGGAGAGAGTG	62.803	72.222	4.18	0.00	0.00	3.51
3060	3365	1.459450	GGCGACAAATTAGGGAGCAA	58.541	50.000	0.00	0.00	0.00	3.91
3133	3439	0.172578	CCTGAACACCACTCGCGATA	59.827	55.000	10.36	0.00	0.00	2.92
3134	3440	1.079819	CCTGAACACCACTCGCGAT	60.080	57.895	10.36	0.00	0.00	4.58
3135	3441	1.532604	ATCCTGAACACCACTCGCGA	61.533	55.000	9.26	9.26	0.00	5.87
3139	3445	3.742640	GCATCCTATCCTGAACACCACTC	60.743	52.174	0.00	0.00	0.00	3.51
3142	3448	2.435805	GAGCATCCTATCCTGAACACCA	59.564	50.000	0.00	0.00	0.00	4.17
3143	3449	2.703007	AGAGCATCCTATCCTGAACACC	59.297	50.000	0.00	0.00	33.66	4.16
3144	3450	3.386078	TCAGAGCATCCTATCCTGAACAC	59.614	47.826	0.00	0.00	33.66	3.32
3180	3489	1.142185	CTCGAACATGCGCATCGTCT	61.142	55.000	25.79	15.37	37.79	4.18
3314	3630	6.141211	CACATCAACGTCTTGACAAATTTCTG	59.859	38.462	0.00	0.00	39.28	3.02
3349	3665	9.891828	GTGTTTATGAGACACAAATTTGATGTA	57.108	29.630	24.64	10.23	45.13	2.29
3353	3669	7.252965	TCGTGTTTATGAGACACAAATTTGA	57.747	32.000	24.64	1.13	45.88	2.69
3383	3699	1.265095	AGTTCAACAGAATGCACAGCG	59.735	47.619	0.00	0.00	42.53	5.18
3452	3773	7.441760	TCATAGGAGAAGAAGTTAGCTAGTACG	59.558	40.741	0.00	0.00	0.00	3.67
3472	3796	5.582439	GCAATACGATTGACACTCATAGG	57.418	43.478	10.52	0.00	0.00	2.57
3532	3856	5.615289	GGATGAGTGTAGGATGCATACTTT	58.385	41.667	18.69	0.38	29.67	2.66
3547	3871	3.837213	AAGAATGTTTGCGGATGAGTG	57.163	42.857	0.00	0.00	0.00	3.51
3553	3877	5.870978	GGTAGTTACTAAGAATGTTTGCGGA	59.129	40.000	0.00	0.00	0.00	5.54
3595	3919	7.850935	AACGGAGGGAGTATTTCTTATATGA	57.149	36.000	0.00	0.00	0.00	2.15
3596	3920	8.368668	AGAAACGGAGGGAGTATTTCTTATATG	58.631	37.037	0.00	0.00	36.46	1.78
3677	4001	7.769220	TCTACACTCTAAAGTATGCCTGTAAC	58.231	38.462	0.00	0.00	33.25	2.50
3678	4002	7.949690	TCTACACTCTAAAGTATGCCTGTAA	57.050	36.000	0.00	0.00	33.25	2.41
3679	4003	8.534954	AATCTACACTCTAAAGTATGCCTGTA	57.465	34.615	0.00	0.00	33.25	2.74
3680	4004	7.124298	TGAATCTACACTCTAAAGTATGCCTGT	59.876	37.037	0.00	0.00	33.25	4.00
3681	4005	7.436673	GTGAATCTACACTCTAAAGTATGCCTG	59.563	40.741	0.00	0.00	37.73	4.85
3682	4006	7.343316	AGTGAATCTACACTCTAAAGTATGCCT	59.657	37.037	0.00	0.00	46.36	4.75
3683	4007	7.493367	AGTGAATCTACACTCTAAAGTATGCC	58.507	38.462	0.00	0.00	46.36	4.40
3787	4111	4.825546	AACAGAATGAAGAACTGCACTG	57.174	40.909	0.00	0.00	39.69	3.66
3847	4173	3.117550	TGCACACAAGCCCATAAGGATAT	60.118	43.478	0.00	0.00	38.24	1.63
3854	4180	1.175654	CATGTGCACACAAGCCCATA	58.824	50.000	24.37	0.00	45.41	2.74
3862	4188	1.237533	CTGGTAAGCATGTGCACACA	58.762	50.000	24.37	12.72	46.44	3.72
3970	4296	1.406898	CAGAAGCAGGATAGCGACAGA	59.593	52.381	0.00	0.00	40.15	3.41
3971	4297	1.135915	ACAGAAGCAGGATAGCGACAG	59.864	52.381	0.00	0.00	40.15	3.51
3972	4298	1.186200	ACAGAAGCAGGATAGCGACA	58.814	50.000	0.00	0.00	40.15	4.35
3973	4299	2.099263	TGTACAGAAGCAGGATAGCGAC	59.901	50.000	0.00	0.00	40.15	5.19
3974	4300	2.375146	TGTACAGAAGCAGGATAGCGA	58.625	47.619	0.00	0.00	40.15	4.93
3975	4301	2.871182	TGTACAGAAGCAGGATAGCG	57.129	50.000	0.00	0.00	40.15	4.26
3976	4302	3.312828	CGATGTACAGAAGCAGGATAGC	58.687	50.000	0.33	0.00	0.00	2.97
4176	4508	0.463833	GCAATTCCCCGTCACCTAGG	60.464	60.000	7.41	7.41	0.00	3.02
4234	4566	4.957684	ATACCAGGTAGTAGGATTGCAC	57.042	45.455	5.31	0.00	0.00	4.57
4249	4581	6.608002	AGAGAGGGAGTACAAAGTAATACCAG	59.392	42.308	8.42	0.00	0.00	4.00
4265	4679	9.088987	AGCTCTTATATTTCTTTAGAGAGGGAG	57.911	37.037	0.00	0.00	35.48	4.30
4357	4771	3.499338	TCATTCACTGCAACCCAAGATT	58.501	40.909	0.00	0.00	0.00	2.40
4586	5002	6.607689	TGTCGGCATAACAAACAGAATTAAG	58.392	36.000	0.00	0.00	0.00	1.85
4587	5003	6.428465	TCTGTCGGCATAACAAACAGAATTAA	59.572	34.615	0.00	0.00	42.34	1.40
4588	5004	5.935206	TCTGTCGGCATAACAAACAGAATTA	59.065	36.000	0.00	0.00	42.34	1.40
4589	5005	4.759693	TCTGTCGGCATAACAAACAGAATT	59.240	37.500	0.00	0.00	42.34	2.17
4596	5012	5.240623	ACTTGAAATCTGTCGGCATAACAAA	59.759	36.000	0.00	0.00	0.00	2.83
4599	5015	4.946784	ACTTGAAATCTGTCGGCATAAC	57.053	40.909	0.00	0.00	0.00	1.89
4716	5132	8.074613	TGGATATGGAGTATATTTCCCGTTAG	57.925	38.462	4.36	0.00	32.09	2.34
4717	5133	8.438618	TTGGATATGGAGTATATTTCCCGTTA	57.561	34.615	4.36	0.00	32.09	3.18
4732	5148	6.540438	AACGAGTCTACTTTTGGATATGGA	57.460	37.500	0.00	0.00	0.00	3.41
4795	5211	7.796838	TGAAAATAAAGATGACGACTTGACTG	58.203	34.615	0.00	0.00	0.00	3.51
4872	5288	4.718940	AAATGATAAACCTGCCCTTTCG	57.281	40.909	0.00	0.00	0.00	3.46
4895	5311	7.109501	GGTTTGGCATACCTGGAAAATAAAAT	58.890	34.615	18.46	0.00	36.63	1.82
4900	5316	2.837591	GGGTTTGGCATACCTGGAAAAT	59.162	45.455	23.51	0.00	35.92	1.82
4901	5317	2.158234	AGGGTTTGGCATACCTGGAAAA	60.158	45.455	23.51	0.00	35.92	2.29
4989	5405	2.282555	CAGTGAGCGTATGCACATACAC	59.717	50.000	18.25	10.35	43.58	2.90
4992	5408	2.427095	AGACAGTGAGCGTATGCACATA	59.573	45.455	10.32	0.00	43.58	2.29
5025	5441	2.674852	ACTTACGTTCAGCTGCATCATG	59.325	45.455	9.47	0.85	0.00	3.07
5037	5453	7.039882	TGGATTCAAATCTAGGACTTACGTTC	58.960	38.462	0.00	0.00	35.73	3.95
5060	5476	4.463891	AGAGGCATTGTTGAAATAGGTTGG	59.536	41.667	0.00	0.00	0.00	3.77
5082	5498	8.268738	CGAAAGGTTTTTATTTTGCAGAAAGAG	58.731	33.333	0.00	0.00	0.00	2.85
5313	5733	1.815003	AGAGTTTGCCAGCTAATGCAC	59.185	47.619	4.41	0.00	42.74	4.57
5315	5735	3.248266	CAAAGAGTTTGCCAGCTAATGC	58.752	45.455	0.00	0.00	34.96	3.56
5344	5764	5.812127	AGAACATGCAAAGAAAACTGAAACC	59.188	36.000	0.00	0.00	0.00	3.27
5433	5853	1.732259	GTCGGTCGCTTTGTTCATCAT	59.268	47.619	0.00	0.00	0.00	2.45
5548	5968	0.323360	TTTCTTCCTTGGGGGCATCG	60.323	55.000	0.00	0.00	34.39	3.84
5605	6025	0.386113	ATTCGGCTAGCGACTTCTCC	59.614	55.000	9.00	0.00	0.00	3.71
5641	6061	1.561076	TCAGCATCCATAACACCAGCT	59.439	47.619	0.00	0.00	0.00	4.24
5667	6087	5.178797	TCTCATGAAAAGGAGTCGAATTCC	58.821	41.667	8.78	8.78	34.83	3.01
5674	6094	6.043854	AGTAGGTTCTCATGAAAAGGAGTC	57.956	41.667	0.00	0.00	33.52	3.36
5758	6178	9.331282	GCTAAATAACTGTTTATGGAGTCTGAT	57.669	33.333	0.00	0.00	0.00	2.90
5905	6325	3.181503	CGCTGTCATCTTTTTCTGGATGG	60.182	47.826	0.00	0.00	39.57	3.51
5932	6352	5.381174	TGAATTCATGTTTCAGCTCTTGG	57.619	39.130	3.38	0.00	0.00	3.61
5940	6360	6.003326	TCCTTAGTGCTGAATTCATGTTTCA	58.997	36.000	8.96	11.52	0.00	2.69
5941	6361	6.500684	TCCTTAGTGCTGAATTCATGTTTC	57.499	37.500	8.96	0.00	0.00	2.78
5942	6362	6.660521	TGATCCTTAGTGCTGAATTCATGTTT	59.339	34.615	8.96	0.00	0.00	2.83
5943	6363	6.094603	GTGATCCTTAGTGCTGAATTCATGTT	59.905	38.462	8.96	0.00	0.00	2.71
5944	6364	5.587844	GTGATCCTTAGTGCTGAATTCATGT	59.412	40.000	8.96	0.00	0.00	3.21
5945	6365	5.587443	TGTGATCCTTAGTGCTGAATTCATG	59.413	40.000	8.96	4.68	0.00	3.07
5946	6366	5.748402	TGTGATCCTTAGTGCTGAATTCAT	58.252	37.500	8.96	0.00	0.00	2.57
5947	6367	5.164620	TGTGATCCTTAGTGCTGAATTCA	57.835	39.130	8.12	8.12	0.00	2.57
5948	6368	5.008415	CCATGTGATCCTTAGTGCTGAATTC	59.992	44.000	0.00	0.00	0.00	2.17
5949	6369	4.885907	CCATGTGATCCTTAGTGCTGAATT	59.114	41.667	0.00	0.00	0.00	2.17
5950	6370	4.080129	ACCATGTGATCCTTAGTGCTGAAT	60.080	41.667	0.00	0.00	0.00	2.57
5951	6371	3.264193	ACCATGTGATCCTTAGTGCTGAA	59.736	43.478	0.00	0.00	0.00	3.02
5952	6372	2.840038	ACCATGTGATCCTTAGTGCTGA	59.160	45.455	0.00	0.00	0.00	4.26
5953	6373	3.272574	ACCATGTGATCCTTAGTGCTG	57.727	47.619	0.00	0.00	0.00	4.41
5954	6374	5.636903	AATACCATGTGATCCTTAGTGCT	57.363	39.130	0.00	0.00	0.00	4.40
5955	6375	5.239525	GGAAATACCATGTGATCCTTAGTGC	59.760	44.000	0.00	0.00	38.79	4.40
5956	6376	6.484643	CAGGAAATACCATGTGATCCTTAGTG	59.515	42.308	0.00	0.00	42.04	2.74
6069	6489	1.053424	AGCGTCCTGGGTTAGTGAAA	58.947	50.000	0.00	0.00	0.00	2.69
6078	6498	0.962356	AGATTTGCAAGCGTCCTGGG	60.962	55.000	0.00	0.00	0.00	4.45
6085	6505	1.595609	GTTCGTCAGATTTGCAAGCG	58.404	50.000	0.00	0.00	0.00	4.68
6097	6517	0.531090	CAGTTGTTCCCGGTTCGTCA	60.531	55.000	0.00	0.00	0.00	4.35
6105	6525	1.403679	TGTTGCTTTCAGTTGTTCCCG	59.596	47.619	0.00	0.00	0.00	5.14
6108	6528	3.149436	TGCTGTTGCTTTCAGTTGTTC	57.851	42.857	0.00	0.00	40.48	3.18
6109	6529	3.591196	TTGCTGTTGCTTTCAGTTGTT	57.409	38.095	0.00	0.00	40.48	2.83
6120	6540	1.214589	CCCTGAGCATTGCTGTTGC	59.785	57.895	17.51	1.68	39.88	4.17
6214	6634	5.236655	TGAGATGAGCTACTAAGAACACG	57.763	43.478	0.00	0.00	0.00	4.49
6223	6643	3.141083	TCCCATACCTGAGATGAGCTACT	59.859	47.826	0.00	0.00	0.00	2.57
6246	6666	5.503662	TTGCTGTATAATGCTCACAATGG	57.496	39.130	0.00	0.00	0.00	3.16
6261	6681	1.672737	CCTGCACGTCAGATTGCTGTA	60.673	52.381	14.19	0.00	45.72	2.74
6266	6686	1.730501	ATGTCCTGCACGTCAGATTG	58.269	50.000	14.19	1.66	45.72	2.67
6304	6724	3.374988	TCAAAAAGATGCATACGGCTCTG	59.625	43.478	0.00	0.00	45.15	3.35
6305	6725	3.609853	TCAAAAAGATGCATACGGCTCT	58.390	40.909	0.00	0.00	45.15	4.09
6306	6726	4.285292	CATCAAAAAGATGCATACGGCTC	58.715	43.478	0.00	0.00	46.90	4.70
6307	6727	4.297299	CATCAAAAAGATGCATACGGCT	57.703	40.909	0.00	0.00	46.90	5.52
6317	6737	1.747355	CGGCCTCTGCATCAAAAAGAT	59.253	47.619	0.00	0.00	40.13	2.40
6318	6738	1.167851	CGGCCTCTGCATCAAAAAGA	58.832	50.000	0.00	0.00	40.13	2.52
6319	6739	0.171903	CCGGCCTCTGCATCAAAAAG	59.828	55.000	0.00	0.00	40.13	2.27
6320	6740	1.250154	CCCGGCCTCTGCATCAAAAA	61.250	55.000	0.00	0.00	40.13	1.94
6321	6741	1.678635	CCCGGCCTCTGCATCAAAA	60.679	57.895	0.00	0.00	40.13	2.44
6322	6742	2.045045	CCCGGCCTCTGCATCAAA	60.045	61.111	0.00	0.00	40.13	2.69
6323	6743	4.113815	CCCCGGCCTCTGCATCAA	62.114	66.667	0.00	0.00	40.13	2.57
6329	6749	3.373565	GTTTTGCCCCGGCCTCTG	61.374	66.667	0.00	0.00	41.09	3.35
6330	6750	4.678743	GGTTTTGCCCCGGCCTCT	62.679	66.667	0.00	0.00	41.09	3.69
6339	6759	2.719531	TTTGAAAAGGGGGTTTTGCC	57.280	45.000	0.00	0.00	38.54	4.52
6362	6782	8.622948	AATAGACGGTTTCAGAAGATCTTTTT	57.377	30.769	9.87	0.00	0.00	1.94
6363	6783	9.720769	TTAATAGACGGTTTCAGAAGATCTTTT	57.279	29.630	9.87	0.01	0.00	2.27
6364	6784	9.892130	ATTAATAGACGGTTTCAGAAGATCTTT	57.108	29.630	9.87	0.00	0.00	2.52
6365	6785	9.319143	CATTAATAGACGGTTTCAGAAGATCTT	57.681	33.333	7.95	7.95	0.00	2.40
6366	6786	7.439655	GCATTAATAGACGGTTTCAGAAGATCT	59.560	37.037	0.00	0.00	0.00	2.75
6367	6787	7.439655	AGCATTAATAGACGGTTTCAGAAGATC	59.560	37.037	0.00	0.00	0.00	2.75
6368	6788	7.225538	CAGCATTAATAGACGGTTTCAGAAGAT	59.774	37.037	0.00	0.00	0.00	2.40
6369	6789	6.535150	CAGCATTAATAGACGGTTTCAGAAGA	59.465	38.462	0.00	0.00	0.00	2.87
6370	6790	6.709643	CAGCATTAATAGACGGTTTCAGAAG	58.290	40.000	0.00	0.00	0.00	2.85
6371	6791	5.064707	GCAGCATTAATAGACGGTTTCAGAA	59.935	40.000	0.00	0.00	0.00	3.02
6372	6792	4.570772	GCAGCATTAATAGACGGTTTCAGA	59.429	41.667	0.00	0.00	0.00	3.27
6373	6793	4.332543	TGCAGCATTAATAGACGGTTTCAG	59.667	41.667	0.00	0.00	0.00	3.02
6374	6794	4.257731	TGCAGCATTAATAGACGGTTTCA	58.742	39.130	0.00	0.00	0.00	2.69
6375	6795	4.260784	CCTGCAGCATTAATAGACGGTTTC	60.261	45.833	8.66	0.00	0.00	2.78
6376	6796	3.627577	CCTGCAGCATTAATAGACGGTTT	59.372	43.478	8.66	0.00	0.00	3.27
6377	6797	3.118408	TCCTGCAGCATTAATAGACGGTT	60.118	43.478	8.66	0.00	0.00	4.44
6378	6798	2.434336	TCCTGCAGCATTAATAGACGGT	59.566	45.455	8.66	0.00	0.00	4.83
6379	6799	3.062763	CTCCTGCAGCATTAATAGACGG	58.937	50.000	8.66	0.00	0.00	4.79
6387	6807	0.620030	TTGCTCCTCCTGCAGCATTA	59.380	50.000	8.66	0.00	45.03	1.90
6425	6845	7.581213	TTTCTCAGAAAGTGAAGGCAAAATA	57.419	32.000	0.00	0.00	33.60	1.40
6446	6866	3.859961	TCGAGTCGCTCTGAATTGATTTC	59.140	43.478	7.92	0.00	30.28	2.17
6467	6887	0.605319	TGTCCACATTGTTCGCCCTC	60.605	55.000	0.00	0.00	0.00	4.30
6476	6896	2.616376	TGTCTTTCCGTTGTCCACATTG	59.384	45.455	0.00	0.00	0.00	2.82
6482	6902	0.584876	CGGTTGTCTTTCCGTTGTCC	59.415	55.000	0.00	0.00	41.58	4.02
6518	6938	1.202806	TCCTGTCAAACCTTGAGCCAG	60.203	52.381	0.00	0.00	41.01	4.85
6555	6975	1.288752	CCTTTCAAATTGCGCCCGT	59.711	52.632	4.18	0.00	0.00	5.28
6628	7050	7.334671	GCAGCTCTATAACCAAATTAGGATACC	59.665	40.741	0.00	0.00	37.17	2.73
6799	7221	4.879197	AGGCAAAAGCTAGCTCAAAAAT	57.121	36.364	19.65	0.00	0.00	1.82
6807	7230	3.753797	AGTGAAAGTAGGCAAAAGCTAGC	59.246	43.478	6.62	6.62	0.00	3.42
6827	7250	4.759693	TGAAAAATAGCCATGACAACGAGT	59.240	37.500	0.00	0.00	0.00	4.18
6828	7251	5.088739	GTGAAAAATAGCCATGACAACGAG	58.911	41.667	0.00	0.00	0.00	4.18
6829	7252	4.517075	TGTGAAAAATAGCCATGACAACGA	59.483	37.500	0.00	0.00	0.00	3.85
6830	7253	4.793071	TGTGAAAAATAGCCATGACAACG	58.207	39.130	0.00	0.00	0.00	4.10
6831	7254	4.622740	GCTGTGAAAAATAGCCATGACAAC	59.377	41.667	0.00	0.00	37.05	3.32
6833	7256	3.825585	TGCTGTGAAAAATAGCCATGACA	59.174	39.130	0.00	0.00	42.11	3.58
6836	7259	4.707030	TCTGCTGTGAAAAATAGCCATG	57.293	40.909	0.00	0.00	42.11	3.66
6884	7327	0.472471	AAACAAAGGAGGCCTCGACA	59.528	50.000	26.36	0.00	30.89	4.35
6888	7331	4.706962	ACAATATGAAACAAAGGAGGCCTC	59.293	41.667	25.59	25.59	30.89	4.70
6939	7382	7.509141	ACACAACATGACATCTGATTTTGTA	57.491	32.000	0.00	0.00	0.00	2.41
6941	7384	6.698329	ACAACACAACATGACATCTGATTTTG	59.302	34.615	0.00	0.00	0.00	2.44
6942	7385	6.808829	ACAACACAACATGACATCTGATTTT	58.191	32.000	0.00	0.00	0.00	1.82
6947	7390	5.412286	TCCATACAACACAACATGACATCTG	59.588	40.000	0.00	0.00	0.00	2.90
6959	7402	6.045318	CCAAACAAACAATCCATACAACACA	58.955	36.000	0.00	0.00	0.00	3.72
6973	7416	1.339151	GCAACAACCCCCAAACAAACA	60.339	47.619	0.00	0.00	0.00	2.83
6978	7421	3.762407	ATAAAGCAACAACCCCCAAAC	57.238	42.857	0.00	0.00	0.00	2.93
7033	7476	5.579753	AGGATTTGAGATACATGGCATCT	57.420	39.130	10.84	10.84	35.43	2.90
7058	7501	8.655901	AGGACATCTCTTTTCCTATTCCTATTC	58.344	37.037	0.00	0.00	38.03	1.75
7074	7517	4.042062	TGATGTGAACCAAAGGACATCTCT	59.958	41.667	13.91	0.00	43.38	3.10
7075	7518	4.326826	TGATGTGAACCAAAGGACATCTC	58.673	43.478	13.91	5.85	43.38	2.75
7076	7519	4.371624	TGATGTGAACCAAAGGACATCT	57.628	40.909	13.91	0.00	43.38	2.90
7077	7520	6.543465	TCATATGATGTGAACCAAAGGACATC	59.457	38.462	0.00	0.00	43.31	3.06
7078	7521	6.425735	TCATATGATGTGAACCAAAGGACAT	58.574	36.000	0.00	0.00	0.00	3.06
7079	7522	5.814481	TCATATGATGTGAACCAAAGGACA	58.186	37.500	0.00	0.00	0.00	4.02
7080	7523	6.949352	ATCATATGATGTGAACCAAAGGAC	57.051	37.500	17.51	0.00	32.68	3.85
7081	7524	7.959658	AAATCATATGATGTGAACCAAAGGA	57.040	32.000	18.85	0.00	34.49	3.36
7206	7650	9.668497	AGTTATTTGGTTTGTAGGAGTAGAATC	57.332	33.333	0.00	0.00	0.00	2.52
7253	7697	9.914131	GTAGGAATTTTACAGCAAAAGATTTCT	57.086	29.630	0.00	0.00	39.44	2.52
7254	7698	9.691362	TGTAGGAATTTTACAGCAAAAGATTTC	57.309	29.630	0.00	0.00	39.44	2.17
7286	7759	1.428912	AGGCCTCATTTGGTTTGGAGA	59.571	47.619	0.00	0.00	0.00	3.71
7302	7775	8.451908	ACATAGACATAATAAAAACTCAGGCC	57.548	34.615	0.00	0.00	0.00	5.19
7351	7824	4.093408	CCATGTCTACAAATCAACACCGAG	59.907	45.833	0.00	0.00	0.00	4.63
7464	7938	6.203145	TGCTTGCGTCTATACTGTGTTAAAAA	59.797	34.615	0.00	0.00	0.00	1.94
7465	7939	5.697178	TGCTTGCGTCTATACTGTGTTAAAA	59.303	36.000	0.00	0.00	0.00	1.52
7466	7940	5.119588	GTGCTTGCGTCTATACTGTGTTAAA	59.880	40.000	0.00	0.00	0.00	1.52
7467	7941	4.624024	GTGCTTGCGTCTATACTGTGTTAA	59.376	41.667	0.00	0.00	0.00	2.01
7468	7942	4.082408	AGTGCTTGCGTCTATACTGTGTTA	60.082	41.667	0.00	0.00	0.00	2.41
7469	7943	2.993899	GTGCTTGCGTCTATACTGTGTT	59.006	45.455	0.00	0.00	0.00	3.32
7470	7944	2.231478	AGTGCTTGCGTCTATACTGTGT	59.769	45.455	0.00	0.00	0.00	3.72
7471	7945	2.854777	GAGTGCTTGCGTCTATACTGTG	59.145	50.000	0.00	0.00	0.00	3.66
7472	7946	2.492088	TGAGTGCTTGCGTCTATACTGT	59.508	45.455	0.00	0.00	0.00	3.55
7473	7947	3.150848	TGAGTGCTTGCGTCTATACTG	57.849	47.619	0.00	0.00	0.00	2.74
7474	7948	5.713792	ATATGAGTGCTTGCGTCTATACT	57.286	39.130	0.00	0.00	0.00	2.12
7475	7949	7.373703	CGTATATATGAGTGCTTGCGTCTATAC	59.626	40.741	0.00	0.00	0.00	1.47
7476	7950	7.407337	CGTATATATGAGTGCTTGCGTCTATA	58.593	38.462	0.00	0.00	0.00	1.31
7477	7951	6.258899	CGTATATATGAGTGCTTGCGTCTAT	58.741	40.000	0.00	0.00	0.00	1.98
7478	7952	5.628134	CGTATATATGAGTGCTTGCGTCTA	58.372	41.667	0.00	0.00	0.00	2.59
7479	7953	4.476862	CGTATATATGAGTGCTTGCGTCT	58.523	43.478	0.00	0.00	0.00	4.18
7480	7954	3.059570	GCGTATATATGAGTGCTTGCGTC	59.940	47.826	6.12	0.00	0.00	5.19
7481	7955	2.987149	GCGTATATATGAGTGCTTGCGT	59.013	45.455	6.12	0.00	0.00	5.24
7482	7956	2.026860	CGCGTATATATGAGTGCTTGCG	59.973	50.000	6.12	0.00	35.74	4.85
7483	7957	2.222596	GCGCGTATATATGAGTGCTTGC	60.223	50.000	8.43	3.82	37.18	4.01
7484	7958	2.986479	TGCGCGTATATATGAGTGCTTG	59.014	45.455	20.64	2.23	40.38	4.01
7485	7959	3.297830	TGCGCGTATATATGAGTGCTT	57.702	42.857	20.64	0.00	40.38	3.91
7486	7960	3.510388	ATGCGCGTATATATGAGTGCT	57.490	42.857	8.29	9.73	40.38	4.40
7487	7961	4.102649	TGTATGCGCGTATATATGAGTGC	58.897	43.478	19.79	16.14	40.17	4.40
7488	7962	6.472163	TGAATGTATGCGCGTATATATGAGTG	59.528	38.462	22.86	0.00	0.00	3.51
7489	7963	6.472486	GTGAATGTATGCGCGTATATATGAGT	59.528	38.462	22.86	10.78	0.00	3.41
7490	7964	6.074835	GGTGAATGTATGCGCGTATATATGAG	60.075	42.308	22.86	3.76	0.00	2.90
7491	7965	5.746721	GGTGAATGTATGCGCGTATATATGA	59.253	40.000	22.86	12.56	0.00	2.15
7492	7966	5.051039	GGGTGAATGTATGCGCGTATATATG	60.051	44.000	22.86	0.00	0.00	1.78
7493	7967	5.047847	GGGTGAATGTATGCGCGTATATAT	58.952	41.667	19.79	18.88	0.00	0.86
7494	7968	4.158949	AGGGTGAATGTATGCGCGTATATA	59.841	41.667	19.79	17.42	0.00	0.86
7495	7969	3.056107	AGGGTGAATGTATGCGCGTATAT	60.056	43.478	19.79	12.93	0.00	0.86
7496	7970	2.297880	AGGGTGAATGTATGCGCGTATA	59.702	45.455	13.13	13.13	0.00	1.47
7497	7971	1.070134	AGGGTGAATGTATGCGCGTAT	59.930	47.619	15.52	15.52	0.00	3.06
7498	7972	0.462375	AGGGTGAATGTATGCGCGTA	59.538	50.000	8.43	4.92	0.00	4.42
7499	7973	0.392461	AAGGGTGAATGTATGCGCGT	60.392	50.000	8.43	7.55	0.00	6.01
7500	7974	1.577468	TAAGGGTGAATGTATGCGCG	58.423	50.000	0.00	0.00	0.00	6.86
7501	7975	5.449304	GTTTATAAGGGTGAATGTATGCGC	58.551	41.667	0.00	0.00	0.00	6.09
7502	7976	5.675970	CGTTTATAAGGGTGAATGTATGCG	58.324	41.667	0.00	0.00	0.00	4.73
7503	7977	5.008217	TGCGTTTATAAGGGTGAATGTATGC	59.992	40.000	0.00	0.00	0.00	3.14
7504	7978	6.037720	TGTGCGTTTATAAGGGTGAATGTATG	59.962	38.462	0.00	0.00	0.00	2.39
7505	7979	6.037830	GTGTGCGTTTATAAGGGTGAATGTAT	59.962	38.462	0.00	0.00	0.00	2.29
7506	7980	5.352016	GTGTGCGTTTATAAGGGTGAATGTA	59.648	40.000	0.00	0.00	0.00	2.29
7507	7981	4.155280	GTGTGCGTTTATAAGGGTGAATGT	59.845	41.667	0.00	0.00	0.00	2.71
7508	7982	4.155099	TGTGTGCGTTTATAAGGGTGAATG	59.845	41.667	0.00	0.00	0.00	2.67
7509	7983	4.155280	GTGTGTGCGTTTATAAGGGTGAAT	59.845	41.667	0.00	0.00	0.00	2.57
7510	7984	3.499157	GTGTGTGCGTTTATAAGGGTGAA	59.501	43.478	0.00	0.00	0.00	3.18
7511	7985	3.068560	GTGTGTGCGTTTATAAGGGTGA	58.931	45.455	0.00	0.00	0.00	4.02
7512	7986	2.159761	CGTGTGTGCGTTTATAAGGGTG	60.160	50.000	0.00	0.00	0.00	4.61
7513	7987	2.070783	CGTGTGTGCGTTTATAAGGGT	58.929	47.619	0.00	0.00	0.00	4.34
7514	7988	2.798834	CGTGTGTGCGTTTATAAGGG	57.201	50.000	0.00	0.00	0.00	3.95

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.