AutoCloner

Multiple sequence alignment - TraesCS4B01G041000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4B01G041000	chr4B	100.000	2681	0	0	1	2681	28415112	28412432	0.000000e+00	4951.0
1	TraesCS4B01G041000	chr4B	79.715	281	49	3	266	545	28490527	28490254	2.110000e-46	196.0
2	TraesCS4B01G041000	chr4B	76.471	187	34	7	1842	2021	422526300	422526117	2.840000e-15	93.5
3	TraesCS4B01G041000	chr4A	91.941	1762	82	28	3	1751	583952865	583954579	0.000000e+00	2412.0
4	TraesCS4B01G041000	chr4A	96.260	508	14	3	1247	1751	583958340	583958845	0.000000e+00	828.0
5	TraesCS4B01G041000	chr4A	82.593	563	60	18	2120	2681	583963534	583964059	1.880000e-126	462.0
6	TraesCS4B01G041000	chr4A	90.667	300	20	5	1746	2038	583963062	583963360	2.500000e-105	392.0
7	TraesCS4B01G041000	chr4A	80.669	269	45	2	267	535	583945922	583946183	4.530000e-48	202.0
8	TraesCS4B01G041000	chr4A	74.498	498	101	22	2065	2545	532932377	532932865	2.720000e-45	193.0
9	TraesCS4B01G041000	chr4D	93.568	1508	58	14	588	2087	16585357	16583881	0.000000e+00	2211.0
10	TraesCS4B01G041000	chr4D	93.078	549	24	7	6	554	16585980	16585446	0.000000e+00	791.0
11	TraesCS4B01G041000	chr4D	79.643	280	49	3	267	545	16607513	16607241	7.570000e-46	195.0
12	TraesCS4B01G041000	chr4D	81.481	108	19	1	1842	1948	341034319	341034212	1.320000e-13	87.9
13	TraesCS4B01G041000	chr4D	97.917	48	1	0	568	615	16585405	16585358	1.710000e-12	84.2
14	TraesCS4B01G041000	chr3B	88.070	285	34	0	268	552	447936683	447936399	3.310000e-89	339.0
15	TraesCS4B01G041000	chr3A	88.070	285	33	1	268	552	467074277	467073994	1.190000e-88	337.0
16	TraesCS4B01G041000	chr3D	87.018	285	37	0	268	552	348134470	348134186	3.330000e-84	322.0
17	TraesCS4B01G041000	chr7A	80.132	453	67	14	2057	2488	184633482	184633932	1.550000e-82	316.0
18	TraesCS4B01G041000	chr1B	76.300	654	107	33	2058	2675	525827418	525828059	3.350000e-79	305.0
19	TraesCS4B01G041000	chr7D	75.680	662	103	33	2057	2678	7817460	7816817	7.310000e-71	278.0
20	TraesCS4B01G041000	chr7D	81.818	99	14	4	1875	1972	427005366	427005461	2.210000e-11	80.5
21	TraesCS4B01G041000	chr6D	79.024	410	69	15	2119	2522	28283139	28283537	5.690000e-67	265.0
22	TraesCS4B01G041000	chr5B	75.076	662	91	46	2058	2678	70563727	70563099	9.590000e-60	241.0
23	TraesCS4B01G041000	chr7B	78.141	398	63	18	2105	2488	146982979	146983366	5.770000e-57	231.0
24	TraesCS4B01G041000	chr7B	77.389	429	65	15	5	433	654943594	654943990	2.690000e-55	226.0
25	TraesCS4B01G041000	chr7B	79.856	139	19	8	1841	1972	221895213	221895077	2.840000e-15	93.5
26	TraesCS4B01G041000	chr6B	74.290	599	115	30	2105	2675	64192273	64192860	1.620000e-52	217.0
27	TraesCS4B01G041000	chrUn	75.938	453	76	20	2053	2478	48621254	48621700	4.530000e-48	202.0
28	TraesCS4B01G041000	chr1A	80.508	118	19	4	1857	1973	372168883	372168769	1.320000e-13	87.9

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4B01G041000	chr4B	28412432	28415112	2680	True	4951.000000	4951	100.000000	1	2681	1	chr4B.!!$R1	2680
1	TraesCS4B01G041000	chr4A	583952865	583958845	5980	False	1620.000000	2412	94.100500	3	1751	2	chr4A.!!$F3	1748
2	TraesCS4B01G041000	chr4A	583963062	583964059	997	False	427.000000	462	86.630000	1746	2681	2	chr4A.!!$F4	935
3	TraesCS4B01G041000	chr4D	16583881	16585980	2099	True	1028.733333	2211	94.854333	6	2087	3	chr4D.!!$R3	2081
4	TraesCS4B01G041000	chr1B	525827418	525828059	641	False	305.000000	305	76.300000	2058	2675	1	chr1B.!!$F1	617
5	TraesCS4B01G041000	chr7D	7816817	7817460	643	True	278.000000	278	75.680000	2057	2678	1	chr7D.!!$R1	621
6	TraesCS4B01G041000	chr5B	70563099	70563727	628	True	241.000000	241	75.076000	2058	2678	1	chr5B.!!$R1	620
7	TraesCS4B01G041000	chr6B	64192273	64192860	587	False	217.000000	217	74.290000	2105	2675	1	chr6B.!!$F1	570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
789	849	0.09715	GGGAAAACGAGCTCATTCGC	59.903	55.0	15.4	17.41	44.15	4.7	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2576	6172	1.149174	CTCCATGCGGGGCAATAGT	59.851	57.895	0.0	0.0	43.62	2.12	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
134	135	2.092323	GCCAGAAGTATGGAAACCCAC	58.908	52.381	0.00	0.00	43.57	4.61
148	149	5.014755	TGGAAACCCACCTATTGTCATAACT	59.985	40.000	0.00	0.00	0.00	2.24
173	174	8.259049	TGAAAACGGTACTGGATAAATACTTG	57.741	34.615	6.65	0.00	0.00	3.16
178	179	6.325545	ACGGTACTGGATAAATACTTGATCCA	59.674	38.462	6.65	5.92	45.45	3.41
206	207	6.178607	TGAAGCTCCATATCATCTTTGCTA	57.821	37.500	0.00	0.00	0.00	3.49
218	219	2.083774	TCTTTGCTAGGTTTCATGCCG	58.916	47.619	0.00	0.00	0.00	5.69
219	220	0.525761	TTTGCTAGGTTTCATGCCGC	59.474	50.000	0.00	0.00	0.00	6.53
220	221	1.312371	TTGCTAGGTTTCATGCCGCC	61.312	55.000	0.00	0.00	0.00	6.13
225	226	2.464459	GGTTTCATGCCGCCTCTCG	61.464	63.158	0.00	0.00	38.08	4.04
226	227	1.447838	GTTTCATGCCGCCTCTCGA	60.448	57.895	0.00	0.00	41.67	4.04
249	250	4.587891	TCATCTTGTCATGCACATACCAA	58.412	39.130	0.00	0.00	33.90	3.67
250	251	4.395854	TCATCTTGTCATGCACATACCAAC	59.604	41.667	0.00	0.00	33.90	3.77
251	252	3.081061	TCTTGTCATGCACATACCAACC	58.919	45.455	0.00	0.00	33.90	3.77
252	253	2.877097	TGTCATGCACATACCAACCT	57.123	45.000	0.00	0.00	0.00	3.50
253	254	3.153369	TGTCATGCACATACCAACCTT	57.847	42.857	0.00	0.00	0.00	3.50
254	255	4.293662	TGTCATGCACATACCAACCTTA	57.706	40.909	0.00	0.00	0.00	2.69
256	257	5.995446	TGTCATGCACATACCAACCTTATA	58.005	37.500	0.00	0.00	0.00	0.98
257	258	6.418946	TGTCATGCACATACCAACCTTATAA	58.581	36.000	0.00	0.00	0.00	0.98
259	260	7.559533	TGTCATGCACATACCAACCTTATAATT	59.440	33.333	0.00	0.00	0.00	1.40
260	261	9.062524	GTCATGCACATACCAACCTTATAATTA	57.937	33.333	0.00	0.00	0.00	1.40
261	262	9.062524	TCATGCACATACCAACCTTATAATTAC	57.937	33.333	0.00	0.00	0.00	1.89
284	285	2.380941	TCATGTTGCCAGGAATGGATG	58.619	47.619	0.00	0.00	0.00	3.51
379	380	0.835941	AGCTGAAGAAGGCCATCGAT	59.164	50.000	5.01	0.00	0.00	3.59
483	484	2.166799	CATCGTGTACGTCGACTTCAG	58.833	52.381	14.70	0.00	40.07	3.02
550	589	0.319728	GAGACCTTCTGCAGCACTGA	59.680	55.000	9.47	0.00	0.00	3.41
551	590	0.982704	AGACCTTCTGCAGCACTGAT	59.017	50.000	9.47	0.00	0.00	2.90
573	612	9.220767	CTGATATGTTGTCATCATCTTCATCAT	57.779	33.333	0.00	0.00	35.70	2.45
578	617	6.183360	TGTTGTCATCATCTTCATCATCTTGC	60.183	38.462	0.00	0.00	0.00	4.01
580	619	5.527582	TGTCATCATCTTCATCATCTTGCTG	59.472	40.000	0.00	0.00	0.00	4.41
582	621	5.992217	TCATCATCTTCATCATCTTGCTGAG	59.008	40.000	0.00	0.00	0.00	3.35
584	623	5.742063	TCATCTTCATCATCTTGCTGAGTT	58.258	37.500	0.00	0.00	0.00	3.01
586	625	6.315642	TCATCTTCATCATCTTGCTGAGTTTC	59.684	38.462	0.00	0.00	0.00	2.78
625	683	6.316140	TCGAATGGAACCATAATTCAGACTTG	59.684	38.462	6.77	0.00	35.31	3.16
634	692	5.821470	CCATAATTCAGACTTGAGAGCATGT	59.179	40.000	0.00	0.00	34.15	3.21
664	722	6.158598	TCTGCCAAATGAGAATAAAAGTTGC	58.841	36.000	0.00	0.00	0.00	4.17
665	723	5.851720	TGCCAAATGAGAATAAAAGTTGCA	58.148	33.333	0.00	0.00	0.00	4.08
666	724	6.465948	TGCCAAATGAGAATAAAAGTTGCAT	58.534	32.000	0.00	0.00	0.00	3.96
667	725	6.369340	TGCCAAATGAGAATAAAAGTTGCATG	59.631	34.615	0.00	0.00	0.00	4.06
668	726	6.591062	GCCAAATGAGAATAAAAGTTGCATGA	59.409	34.615	0.00	0.00	0.00	3.07
669	727	7.279313	GCCAAATGAGAATAAAAGTTGCATGAT	59.721	33.333	0.00	0.00	0.00	2.45
670	728	9.806203	CCAAATGAGAATAAAAGTTGCATGATA	57.194	29.630	0.00	0.00	0.00	2.15
701	760	3.663995	TGCATTTCATGTGTTCTTGGG	57.336	42.857	0.00	0.00	0.00	4.12
753	812	0.323908	CCCAAAATTAGGGGGTGCGA	60.324	55.000	7.82	0.00	42.90	5.10
764	823	3.792736	GGTGCGACCCATGGCCTA	61.793	66.667	6.09	0.00	30.04	3.93
765	824	2.203070	GTGCGACCCATGGCCTAG	60.203	66.667	6.09	0.00	0.00	3.02
766	825	2.364973	TGCGACCCATGGCCTAGA	60.365	61.111	6.09	0.00	0.00	2.43
767	826	2.423446	GCGACCCATGGCCTAGAG	59.577	66.667	6.09	0.00	0.00	2.43
769	828	2.511452	CGACCCATGGCCTAGAGGG	61.511	68.421	17.32	17.32	46.96	4.30
789	849	0.097150	GGGAAAACGAGCTCATTCGC	59.903	55.000	15.40	17.41	44.15	4.70
791	851	0.247301	GAAAACGAGCTCATTCGCCG	60.247	55.000	15.40	0.21	44.15	6.46
903	963	1.980772	ACTTTGCATGCCAGCCTCC	60.981	57.895	16.68	0.00	0.00	4.30
996	1056	3.026311	GTCGTTGTCGTCGCCGTT	61.026	61.111	0.00	0.00	38.33	4.44
997	1057	3.025743	TCGTTGTCGTCGCCGTTG	61.026	61.111	0.00	0.00	38.33	4.10
998	1058	3.324671	CGTTGTCGTCGCCGTTGT	61.325	61.111	0.00	0.00	35.01	3.32
1082	1142	0.333993	AGCTACTTCCTCCGGTACCA	59.666	55.000	13.54	0.00	0.00	3.25
1167	1227	4.335647	AACGAGCAGCAGGTGGGG	62.336	66.667	0.86	0.00	0.00	4.96
1296	1356	3.264897	GAGGCGCGCATGTCGATT	61.265	61.111	34.42	6.86	41.67	3.34
1674	1734	2.380064	AGGCAAACCCAAAGATGTCA	57.620	45.000	0.00	0.00	36.11	3.58
1682	1742	2.025887	ACCCAAAGATGTCATCCTGACC	60.026	50.000	9.29	0.00	46.40	4.02
1686	1746	4.384978	CCAAAGATGTCATCCTGACCTGAT	60.385	45.833	9.29	0.00	46.40	2.90
1740	1800	8.956426	GTTTCCTTTTTCCTGTATGTATGATGA	58.044	33.333	0.00	0.00	0.00	2.92
1743	1803	7.720957	TCCTTTTTCCTGTATGTATGATGATGG	59.279	37.037	0.00	0.00	0.00	3.51
1837	3693	8.133754	ACACACTTGAATTTGACATGAAAATG	57.866	30.769	0.00	0.00	0.00	2.32
1897	3810	1.212616	CGCCTCATCTTCGTTGATCC	58.787	55.000	0.00	0.00	0.00	3.36
1899	3812	2.478831	GCCTCATCTTCGTTGATCCTC	58.521	52.381	0.00	0.00	0.00	3.71
1950	5305	2.523412	CCGGCGGGAGGGATTCTA	60.523	66.667	20.56	0.00	34.06	2.10
2046	5408	0.109226	CGAGAGACACCCCTTTCGTC	60.109	60.000	0.00	0.00	36.44	4.20
2048	5410	0.680061	AGAGACACCCCTTTCGTCAC	59.320	55.000	0.00	0.00	31.92	3.67
2050	5412	1.302271	GACACCCCTTTCGTCACCC	60.302	63.158	0.00	0.00	0.00	4.61
2051	5413	2.033602	CACCCCTTTCGTCACCCC	59.966	66.667	0.00	0.00	0.00	4.95
2115	5479	4.222847	CCGCCGCTCCTACCTTCC	62.223	72.222	0.00	0.00	0.00	3.46
2116	5480	3.148279	CGCCGCTCCTACCTTCCT	61.148	66.667	0.00	0.00	0.00	3.36
2131	5585	3.144193	CCTTCTCTCCTCGCCGCT	61.144	66.667	0.00	0.00	0.00	5.52
2324	5779	4.910585	CCGGCGGGGATGTGCTAC	62.911	72.222	20.56	0.00	38.47	3.58
2377	5838	2.758327	GGGGCCAAAACGGGATCC	60.758	66.667	4.39	1.92	34.06	3.36
2526	5991	3.197790	CTTGGTGATGGGCGCTCG	61.198	66.667	7.64	0.00	0.00	5.03
2559	6126	4.864334	GGCTGGATGCGGACAGGG	62.864	72.222	0.00	0.00	44.05	4.45
2601	6197	3.865383	CCCGCATGGAGCTGGCTA	61.865	66.667	0.00	0.00	40.88	3.93
2607	6203	1.074623	ATGGAGCTGGCTAGAGGCT	60.075	57.895	0.00	0.00	41.69	4.58
2618	6234	3.863114	TAGAGGCTGTGGTGGGGCA	62.863	63.158	0.00	0.00	0.00	5.36
2628	6244	4.447342	GTGGGGCATCAGGGGTGG	62.447	72.222	0.00	0.00	0.00	4.61
2662	6278	3.097162	GGGAGGGATGGGTGGTCC	61.097	72.222	0.00	0.00	34.92	4.46

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	6.384224	TGATCATGTCAATTTTGAACTCAGC	58.616	36.000	0.00	0.00	39.21	4.26
28	29	0.454620	AGAGTTCACGCATCGACGAC	60.455	55.000	0.00	0.00	36.70	4.34
134	135	6.737254	ACCGTTTTCAGTTATGACAATAGG	57.263	37.500	0.00	0.00	34.35	2.57
148	149	8.095792	TCAAGTATTTATCCAGTACCGTTTTCA	58.904	33.333	0.00	0.00	0.00	2.69
173	174	7.281040	TGATATGGAGCTTCAAAAATGGATC	57.719	36.000	0.00	0.00	0.00	3.36
178	179	7.709613	GCAAAGATGATATGGAGCTTCAAAAAT	59.290	33.333	0.00	0.00	0.00	1.82
206	207	1.078143	GAGAGGCGGCATGAAACCT	60.078	57.895	13.08	0.00	34.43	3.50
218	219	2.879002	TGACAAGATGATCGAGAGGC	57.121	50.000	0.00	0.00	0.00	4.70
219	220	3.058450	GCATGACAAGATGATCGAGAGG	58.942	50.000	0.00	0.00	0.00	3.69
220	221	3.490155	GTGCATGACAAGATGATCGAGAG	59.510	47.826	0.00	0.00	0.00	3.20
225	226	4.818005	TGGTATGTGCATGACAAGATGATC	59.182	41.667	0.00	0.00	38.36	2.92
226	227	4.784177	TGGTATGTGCATGACAAGATGAT	58.216	39.130	0.00	0.00	38.36	2.45
249	250	7.066142	TGGCAACATGATGGTAATTATAAGGT	58.934	34.615	0.00	0.00	46.17	3.50
250	251	7.523293	TGGCAACATGATGGTAATTATAAGG	57.477	36.000	0.00	0.00	46.17	2.69
438	439	2.022240	CTTGGAGGAGTAGCCGGAGC	62.022	65.000	5.05	0.00	43.43	4.70
550	589	9.794719	AAGATGATGAAGATGATGACAACATAT	57.205	29.630	0.00	0.00	36.82	1.78
551	590	9.052759	CAAGATGATGAAGATGATGACAACATA	57.947	33.333	0.00	0.00	36.82	2.29
573	612	2.634940	AGTAGGCAGAAACTCAGCAAGA	59.365	45.455	0.00	0.00	29.77	3.02
578	617	3.733337	ACAACAGTAGGCAGAAACTCAG	58.267	45.455	0.00	0.00	0.00	3.35
580	619	3.184581	CGAACAACAGTAGGCAGAAACTC	59.815	47.826	0.00	0.00	0.00	3.01
582	621	3.128349	TCGAACAACAGTAGGCAGAAAC	58.872	45.455	0.00	0.00	0.00	2.78
584	623	3.462483	TTCGAACAACAGTAGGCAGAA	57.538	42.857	0.00	0.00	0.00	3.02
586	625	2.416547	CCATTCGAACAACAGTAGGCAG	59.583	50.000	0.00	0.00	0.00	4.85
634	692	4.877378	ATTCTCATTTGGCAGAGCAAAA	57.123	36.364	0.00	0.00	35.82	2.44
643	701	6.591062	TCATGCAACTTTTATTCTCATTTGGC	59.409	34.615	0.00	0.00	0.00	4.52
664	722	6.253942	TGAAATGCAACGCTCAAAATATCATG	59.746	34.615	0.00	0.00	0.00	3.07
665	723	6.331845	TGAAATGCAACGCTCAAAATATCAT	58.668	32.000	0.00	0.00	0.00	2.45
666	724	5.707931	TGAAATGCAACGCTCAAAATATCA	58.292	33.333	0.00	0.00	0.00	2.15
667	725	6.633683	CATGAAATGCAACGCTCAAAATATC	58.366	36.000	0.00	0.00	37.62	1.63
668	726	6.578020	CATGAAATGCAACGCTCAAAATAT	57.422	33.333	0.00	0.00	37.62	1.28
670	728	4.914312	CATGAAATGCAACGCTCAAAAT	57.086	36.364	0.00	0.00	37.62	1.82
701	760	3.164028	GGCTAAATTTGCCGATCGC	57.836	52.632	10.32	6.08	41.03	4.58
747	806	3.757248	CTAGGCCATGGGTCGCACC	62.757	68.421	15.13	4.65	37.60	5.01
753	812	2.039405	CCCCTCTAGGCCATGGGT	60.039	66.667	15.13	0.00	38.03	4.51
769	828	0.727398	CGAATGAGCTCGTTTTCCCC	59.273	55.000	21.80	8.25	34.08	4.81
772	831	0.247301	CGGCGAATGAGCTCGTTTTC	60.247	55.000	21.80	16.06	40.99	2.29
802	862	1.338769	GCGGAGGAAGGCAAACTTAGA	60.339	52.381	0.00	0.00	40.21	2.10
845	905	1.062587	CATGTTTCGCCGTGATCCTTC	59.937	52.381	0.00	0.00	0.00	3.46
1167	1227	2.191641	GCCATGTCCAGCTCCTCC	59.808	66.667	0.00	0.00	0.00	4.30
1674	1734	2.090324	TGGAGGATCATCAGGTCAGGAT	60.090	50.000	9.94	0.00	36.25	3.24
1681	1741	5.557576	TTCTACAATGGAGGATCATCAGG	57.442	43.478	9.94	0.00	36.25	3.86
1682	1742	7.038445	AGGTATTCTACAATGGAGGATCATCAG	60.038	40.741	9.94	0.00	36.25	2.90
1686	1746	6.043243	GGAAGGTATTCTACAATGGAGGATCA	59.957	42.308	0.00	0.00	34.10	2.92
1719	1779	8.347771	CACCATCATCATACATACAGGAAAAAG	58.652	37.037	0.00	0.00	0.00	2.27
1837	3693	1.224870	GGCAGAGGAACCCTAAGCC	59.775	63.158	10.97	10.97	43.16	4.35
1996	5358	2.396590	TATTCAACCTTCACGGAGCC	57.603	50.000	0.00	0.00	36.31	4.70
2105	5469	2.092321	CGAGGAGAGAAGGAAGGTAGGA	60.092	54.545	0.00	0.00	0.00	2.94
2115	5479	2.103934	CAGCGGCGAGGAGAGAAG	59.896	66.667	12.98	0.00	0.00	2.85
2116	5480	4.135153	GCAGCGGCGAGGAGAGAA	62.135	66.667	12.98	0.00	0.00	2.87
2136	5590	4.947147	TTGCCCGCCAACGAGCTT	62.947	61.111	0.00	0.00	44.34	3.74
2265	5719	4.052518	GGGGCAGCATCCACCAGT	62.053	66.667	0.00	0.00	0.00	4.00
2358	5813	4.751820	ATCCCGTTTTGGCCCCCG	62.752	66.667	0.00	0.00	35.87	5.73
2371	5832	2.588201	GGGAGAGCCATCGGATCCC	61.588	68.421	6.06	0.00	39.17	3.85
2379	5840	1.760086	CCTGTCGAGGGAGAGCCAT	60.760	63.158	0.00	0.00	35.40	4.40
2500	5964	1.825191	CATCACCAAGGGGCCATCG	60.825	63.158	4.39	0.00	37.90	3.84
2502	5966	2.691732	CCATCACCAAGGGGCCAT	59.308	61.111	4.39	0.00	37.90	4.40
2531	5996	3.350031	ATCCAGCCGCCAAAGAGGG	62.350	63.158	0.00	0.00	38.09	4.30
2576	6172	1.149174	CTCCATGCGGGGCAATAGT	59.851	57.895	0.00	0.00	43.62	2.12
2607	6203	3.660571	CCCTGATGCCCCACCACA	61.661	66.667	0.00	0.00	0.00	4.17
2618	6234	4.033776	CCACACGCCACCCCTGAT	62.034	66.667	0.00	0.00	0.00	2.90
2632	6248	4.410400	CTCCCGCAACCTCCCCAC	62.410	72.222	0.00	0.00	0.00	4.61

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.