AutoCloner

Multiple sequence alignment - TraesCS4B01G040200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4B01G040200	chr4B	100.000	3719	0	0	1	3719	28222533	28218815	0.000000e+00	6868.0
1	TraesCS4B01G040200	chr4B	92.857	1876	116	7	956	2823	28233026	28231161	0.000000e+00	2706.0
2	TraesCS4B01G040200	chr4B	93.514	1033	65	2	1758	2789	28287258	28286227	0.000000e+00	1535.0
3	TraesCS4B01G040200	chr4B	92.254	865	59	5	2856	3719	28285972	28285115	0.000000e+00	1219.0
4	TraesCS4B01G040200	chr4B	90.827	665	40	11	821	1484	28288124	28287480	0.000000e+00	870.0
5	TraesCS4B01G040200	chr4B	81.654	387	63	6	1025	1410	28306997	28306618	7.750000e-82	315.0
6	TraesCS4B01G040200	chr4B	93.671	158	3	4	654	811	28288255	28288105	2.890000e-56	230.0
7	TraesCS4B01G040200	chr4B	96.429	84	3	0	2776	2859	28286208	28286125	5.010000e-29	139.0
8	TraesCS4B01G040200	chr4A	90.779	1822	143	9	950	2749	584055117	584056935	0.000000e+00	2410.0
9	TraesCS4B01G040200	chr4A	90.079	504	38	7	3216	3719	584059851	584060342	0.000000e+00	643.0
10	TraesCS4B01G040200	chr4A	90.020	501	39	7	3218	3717	584057749	584058239	4.050000e-179	638.0
11	TraesCS4B01G040200	chr4A	85.849	424	51	6	2411	2827	584058901	584059322	3.410000e-120	442.0
12	TraesCS4B01G040200	chr4A	78.148	270	49	8	2961	3226	708309525	708309262	2.970000e-36	163.0
13	TraesCS4B01G040200	chr4A	92.424	66	5	0	345	410	593684786	593684721	1.100000e-15	95.3
14	TraesCS4B01G040200	chrUn	93.514	1033	65	2	1758	2789	278726297	278725266	0.000000e+00	1535.0
15	TraesCS4B01G040200	chrUn	92.254	865	59	5	2856	3719	278725011	278724154	0.000000e+00	1219.0
16	TraesCS4B01G040200	chrUn	90.827	665	40	11	821	1484	278727163	278726519	0.000000e+00	870.0
17	TraesCS4B01G040200	chrUn	93.671	158	3	4	654	811	278727294	278727144	2.890000e-56	230.0
18	TraesCS4B01G040200	chrUn	96.429	84	3	0	2776	2859	278725247	278725164	5.010000e-29	139.0
19	TraesCS4B01G040200	chrUn	83.529	85	12	2	346	428	87749305	87749221	1.110000e-10	78.7
20	TraesCS4B01G040200	chrUn	87.879	66	7	1	343	407	356109136	356109201	3.980000e-10	76.8
21	TraesCS4B01G040200	chr4D	90.485	1051	92	5	1752	2795	16366165	16365116	0.000000e+00	1380.0
22	TraesCS4B01G040200	chr4D	95.366	410	19	0	1024	1433	16366964	16366555	0.000000e+00	652.0
23	TraesCS4B01G040200	chr4D	81.720	372	60	6	1046	1416	16369842	16369478	1.680000e-78	303.0
24	TraesCS4B01G040200	chr5D	80.920	435	73	9	1001	1433	133309288	133309714	5.950000e-88	335.0
25	TraesCS4B01G040200	chr5D	74.079	760	163	25	1977	2710	515411754	515411003	7.860000e-72	281.0
26	TraesCS4B01G040200	chr5D	92.857	56	3	1	1509	1563	481641598	481641653	3.080000e-11	80.5
27	TraesCS4B01G040200	chr5D	87.879	66	7	1	337	401	47685946	47685881	3.980000e-10	76.8
28	TraesCS4B01G040200	chr5A	74.147	762	162	24	1977	2710	643626725	643625971	2.190000e-72	283.0
29	TraesCS4B01G040200	chr5A	84.286	210	29	3	3019	3225	514201290	514201082	6.300000e-48	202.0
30	TraesCS4B01G040200	chr5A	83.645	214	30	4	3019	3227	700311631	700311844	2.930000e-46	196.0
31	TraesCS4B01G040200	chr5A	82.500	80	10	4	2363	2440	513959851	513959774	2.400000e-07	67.6
32	TraesCS4B01G040200	chr2B	84.360	211	28	4	3019	3225	110818024	110817815	6.300000e-48	202.0
33	TraesCS4B01G040200	chr2B	85.714	63	8	1	2369	2430	18949109	18949047	8.620000e-07	65.8
34	TraesCS4B01G040200	chr3A	83.886	211	31	3	3019	3227	328916814	328917023	8.150000e-47	198.0
35	TraesCS4B01G040200	chr3A	83.810	210	30	3	3019	3225	547343262	547343054	2.930000e-46	196.0
36	TraesCS4B01G040200	chr3A	82.775	209	33	2	3019	3225	728933006	728933213	2.280000e-42	183.0
37	TraesCS4B01G040200	chr3A	86.207	87	9	3	343	426	36769056	36769142	1.420000e-14	91.6
38	TraesCS4B01G040200	chr7D	98.333	60	1	0	2961	3020	13388012	13387953	5.080000e-19	106.0
39	TraesCS4B01G040200	chr7D	98.333	60	1	0	2961	3020	478316677	478316618	5.080000e-19	106.0
40	TraesCS4B01G040200	chr7D	94.030	67	3	1	2954	3020	605897668	605897603	2.360000e-17	100.0
41	TraesCS4B01G040200	chr6B	98.333	60	1	0	2961	3020	27127198	27127257	5.080000e-19	106.0
42	TraesCS4B01G040200	chr2D	98.333	60	1	0	2961	3020	33728460	33728401	5.080000e-19	106.0
43	TraesCS4B01G040200	chr1A	92.958	71	5	0	2950	3020	151337461	151337531	1.830000e-18	104.0
44	TraesCS4B01G040200	chr7B	90.141	71	7	0	346	416	537546952	537546882	3.950000e-15	93.5
45	TraesCS4B01G040200	chr6D	89.333	75	7	1	343	416	93813023	93812949	3.950000e-15	93.5
46	TraesCS4B01G040200	chr3B	91.304	69	5	1	343	410	794356886	794356954	3.950000e-15	93.5
47	TraesCS4B01G040200	chr5B	89.231	65	7	0	346	410	34770494	34770558	8.560000e-12	82.4
48	TraesCS4B01G040200	chr5B	89.091	55	4	2	2363	2416	567581453	567581400	2.400000e-07	67.6
49	TraesCS4B01G040200	chr5B	82.432	74	9	4	2363	2434	489386474	489386403	1.120000e-05	62.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4B01G040200	chr4B	28218815	28222533	3718	True	6868.000000	6868	100.000000	1	3719	1	chr4B.!!$R1	3718
1	TraesCS4B01G040200	chr4B	28231161	28233026	1865	True	2706.000000	2706	92.857000	956	2823	1	chr4B.!!$R2	1867
2	TraesCS4B01G040200	chr4B	28285115	28288255	3140	True	798.600000	1535	93.339000	654	3719	5	chr4B.!!$R4	3065
3	TraesCS4B01G040200	chr4A	584055117	584060342	5225	False	1033.250000	2410	89.181750	950	3719	4	chr4A.!!$F1	2769
4	TraesCS4B01G040200	chrUn	278724154	278727294	3140	True	798.600000	1535	93.339000	654	3719	5	chrUn.!!$R2	3065
5	TraesCS4B01G040200	chr4D	16365116	16369842	4726	True	778.333333	1380	89.190333	1024	2795	3	chr4D.!!$R1	1771
6	TraesCS4B01G040200	chr5D	515411003	515411754	751	True	281.000000	281	74.079000	1977	2710	1	chr5D.!!$R2	733
7	TraesCS4B01G040200	chr5A	643625971	643626725	754	True	283.000000	283	74.147000	1977	2710	1	chr5A.!!$R3	733

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
607	608	0.034670	AATCAGGCAAGTCCAGCTCC	60.035	55.0	0.00	37.29	4.70	F
630	631	0.176680	CCAACTGCTGCGTAGGATCT	59.823	55.0	1.76	0.00	2.75	F
827	828	0.251341	GGTGAGGTTGGCTGGACAAT	60.251	55.0	0.00	32.24	2.71	F
831	832	0.478072	AGGTTGGCTGGACAATGACA	59.522	50.0	0.00	32.24	3.58	F
2234	4254	0.753479	CTCGGCCTGGAGCTCTCTAA	60.753	60.0	14.64	43.05	2.10	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2232	4252	0.608035	CCCAAAGGAAGCGTGCCTTA	60.608	55.000	7.98	0.00	44.72	2.69	R
2446	4478	1.478105	GGAGATGGGCAGCATGATCAA	60.478	52.381	0.00	0.00	39.69	2.57	R
2489	4521	1.501582	GTTCCTACCCTCCATGAGCT	58.498	55.000	0.00	0.00	0.00	4.09	R
2502	4534	1.672854	CCTGCATCCCGACGTTCCTA	61.673	60.000	0.00	0.00	0.00	2.94	R
3073	5787	0.108756	GAGGTCAACGTAGGCACCTC	60.109	60.000	15.46	15.46	46.26	3.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
38	39	7.095695	AGAAACTCCGAAAAAGAACAATTGA	57.904	32.000	13.59	0.00	0.00	2.57
39	40	7.716612	AGAAACTCCGAAAAAGAACAATTGAT	58.283	30.769	13.59	0.00	0.00	2.57
41	42	8.716646	AAACTCCGAAAAAGAACAATTGATTT	57.283	26.923	13.59	7.28	0.00	2.17
42	43	8.716646	AACTCCGAAAAAGAACAATTGATTTT	57.283	26.923	13.59	12.58	0.00	1.82
43	44	8.716646	ACTCCGAAAAAGAACAATTGATTTTT	57.283	26.923	21.83	21.83	37.51	1.94
45	46	8.709386	TCCGAAAAAGAACAATTGATTTTTGA	57.291	26.923	24.39	17.85	35.57	2.69
46	47	8.599774	TCCGAAAAAGAACAATTGATTTTTGAC	58.400	29.630	24.39	15.98	35.57	3.18
47	48	8.386606	CCGAAAAAGAACAATTGATTTTTGACA	58.613	29.630	24.39	0.00	35.57	3.58
48	49	9.919348	CGAAAAAGAACAATTGATTTTTGACAT	57.081	25.926	24.39	10.88	35.57	3.06
51	52	9.617523	AAAAGAACAATTGATTTTTGACATCCT	57.382	25.926	13.59	0.00	0.00	3.24
52	53	8.822652	AAGAACAATTGATTTTTGACATCCTC	57.177	30.769	13.59	0.00	0.00	3.71
54	55	6.573664	ACAATTGATTTTTGACATCCTCGA	57.426	33.333	13.59	0.00	0.00	4.04
55	56	6.980593	ACAATTGATTTTTGACATCCTCGAA	58.019	32.000	13.59	0.00	0.00	3.71
56	57	7.086376	ACAATTGATTTTTGACATCCTCGAAG	58.914	34.615	13.59	0.00	0.00	3.79
57	58	7.040478	ACAATTGATTTTTGACATCCTCGAAGA	60.040	33.333	13.59	0.00	0.00	2.87
58	59	6.875948	TTGATTTTTGACATCCTCGAAGAA	57.124	33.333	0.00	0.00	34.09	2.52
59	60	6.875948	TGATTTTTGACATCCTCGAAGAAA	57.124	33.333	0.00	0.00	34.09	2.52
62	63	3.401033	TTGACATCCTCGAAGAAAGCA	57.599	42.857	0.00	0.00	34.09	3.91
63	64	3.401033	TGACATCCTCGAAGAAAGCAA	57.599	42.857	0.00	0.00	34.09	3.91
64	65	3.738982	TGACATCCTCGAAGAAAGCAAA	58.261	40.909	0.00	0.00	34.09	3.68
65	66	4.133820	TGACATCCTCGAAGAAAGCAAAA	58.866	39.130	0.00	0.00	34.09	2.44
66	67	4.761739	TGACATCCTCGAAGAAAGCAAAAT	59.238	37.500	0.00	0.00	34.09	1.82
67	68	5.937540	TGACATCCTCGAAGAAAGCAAAATA	59.062	36.000	0.00	0.00	34.09	1.40
69	70	6.173339	ACATCCTCGAAGAAAGCAAAATAGA	58.827	36.000	0.00	0.00	34.09	1.98
70	71	6.655003	ACATCCTCGAAGAAAGCAAAATAGAA	59.345	34.615	0.00	0.00	34.09	2.10
71	72	7.337942	ACATCCTCGAAGAAAGCAAAATAGAAT	59.662	33.333	0.00	0.00	34.09	2.40
72	73	8.830580	CATCCTCGAAGAAAGCAAAATAGAATA	58.169	33.333	0.00	0.00	34.09	1.75
73	74	8.425577	TCCTCGAAGAAAGCAAAATAGAATAG	57.574	34.615	0.00	0.00	34.09	1.73
75	76	7.011857	CCTCGAAGAAAGCAAAATAGAATAGCT	59.988	37.037	0.00	0.00	34.09	3.32
76	77	8.268850	TCGAAGAAAGCAAAATAGAATAGCTT	57.731	30.769	0.00	0.00	46.49	3.74
141	142	9.507329	AAAATAGAATAGCTTTGACTGACTTGA	57.493	29.630	0.00	0.00	0.00	3.02
142	143	9.507329	AAATAGAATAGCTTTGACTGACTTGAA	57.493	29.630	0.00	0.00	0.00	2.69
143	144	9.507329	AATAGAATAGCTTTGACTGACTTGAAA	57.493	29.630	0.00	0.00	0.00	2.69
144	145	7.807977	AGAATAGCTTTGACTGACTTGAAAA	57.192	32.000	0.00	0.00	0.00	2.29
191	192	7.411486	TGGAGAGACCAATGTAAAACAAAAA	57.589	32.000	0.00	0.00	46.75	1.94
194	195	8.194769	GGAGAGACCAATGTAAAACAAAAAGAA	58.805	33.333	0.00	0.00	38.79	2.52
195	196	9.581099	GAGAGACCAATGTAAAACAAAAAGAAA	57.419	29.630	0.00	0.00	0.00	2.52
196	197	9.936759	AGAGACCAATGTAAAACAAAAAGAAAA	57.063	25.926	0.00	0.00	0.00	2.29
198	199	9.719355	AGACCAATGTAAAACAAAAAGAAAACT	57.281	25.926	0.00	0.00	0.00	2.66
210	211	8.958119	ACAAAAAGAAAACTAATTCCCTTTCC	57.042	30.769	0.00	0.00	0.00	3.13
211	212	8.768397	ACAAAAAGAAAACTAATTCCCTTTCCT	58.232	29.630	0.00	0.00	0.00	3.36
212	213	9.613428	CAAAAAGAAAACTAATTCCCTTTCCTT	57.387	29.630	0.00	0.00	0.00	3.36
213	214	9.832445	AAAAAGAAAACTAATTCCCTTTCCTTC	57.168	29.630	0.00	0.00	0.00	3.46
214	215	7.540474	AAGAAAACTAATTCCCTTTCCTTCC	57.460	36.000	0.00	0.00	0.00	3.46
215	216	5.710567	AGAAAACTAATTCCCTTTCCTTCCG	59.289	40.000	0.00	0.00	0.00	4.30
216	217	3.000684	ACTAATTCCCTTTCCTTCCGC	57.999	47.619	0.00	0.00	0.00	5.54
217	218	2.298610	CTAATTCCCTTTCCTTCCGCC	58.701	52.381	0.00	0.00	0.00	6.13
218	219	0.407918	AATTCCCTTTCCTTCCGCCA	59.592	50.000	0.00	0.00	0.00	5.69
221	222	2.757077	CCTTTCCTTCCGCCACCT	59.243	61.111	0.00	0.00	0.00	4.00
223	224	1.374947	CTTTCCTTCCGCCACCTCA	59.625	57.895	0.00	0.00	0.00	3.86
225	226	2.406002	TTTCCTTCCGCCACCTCACC	62.406	60.000	0.00	0.00	0.00	4.02
226	227	4.760047	CCTTCCGCCACCTCACCG	62.760	72.222	0.00	0.00	0.00	4.94
227	228	3.691342	CTTCCGCCACCTCACCGA	61.691	66.667	0.00	0.00	0.00	4.69
228	229	3.000819	TTCCGCCACCTCACCGAT	61.001	61.111	0.00	0.00	0.00	4.18
229	230	2.907897	CTTCCGCCACCTCACCGATC	62.908	65.000	0.00	0.00	0.00	3.69
230	231	4.530857	CCGCCACCTCACCGATCC	62.531	72.222	0.00	0.00	0.00	3.36
231	232	4.873129	CGCCACCTCACCGATCCG	62.873	72.222	0.00	0.00	0.00	4.18
233	234	3.461773	CCACCTCACCGATCCGCT	61.462	66.667	0.00	0.00	0.00	5.52
235	236	2.680352	ACCTCACCGATCCGCTGT	60.680	61.111	0.00	0.00	0.00	4.40
237	238	2.418910	CCTCACCGATCCGCTGTCT	61.419	63.158	0.00	0.00	0.00	3.41
238	239	1.101635	CCTCACCGATCCGCTGTCTA	61.102	60.000	0.00	0.00	0.00	2.59
239	240	0.738975	CTCACCGATCCGCTGTCTAA	59.261	55.000	0.00	0.00	0.00	2.10
241	242	0.456221	CACCGATCCGCTGTCTAACT	59.544	55.000	0.00	0.00	0.00	2.24
242	243	1.135083	CACCGATCCGCTGTCTAACTT	60.135	52.381	0.00	0.00	0.00	2.66
243	244	1.135083	ACCGATCCGCTGTCTAACTTG	60.135	52.381	0.00	0.00	0.00	3.16
244	245	1.135083	CCGATCCGCTGTCTAACTTGT	60.135	52.381	0.00	0.00	0.00	3.16
246	247	1.661112	GATCCGCTGTCTAACTTGTGC	59.339	52.381	0.00	0.00	0.00	4.57
248	249	0.602638	CCGCTGTCTAACTTGTGCCA	60.603	55.000	0.00	0.00	0.00	4.92
249	250	0.512952	CGCTGTCTAACTTGTGCCAC	59.487	55.000	0.00	0.00	0.00	5.01
251	252	1.543429	GCTGTCTAACTTGTGCCACCT	60.543	52.381	0.00	0.00	0.00	4.00
252	253	2.417719	CTGTCTAACTTGTGCCACCTC	58.582	52.381	0.00	0.00	0.00	3.85
253	254	1.765904	TGTCTAACTTGTGCCACCTCA	59.234	47.619	0.00	0.00	0.00	3.86
255	256	1.071699	TCTAACTTGTGCCACCTCACC	59.928	52.381	0.00	0.00	36.17	4.02
256	257	0.250124	TAACTTGTGCCACCTCACCG	60.250	55.000	0.00	0.00	36.17	4.94
257	258	1.978455	AACTTGTGCCACCTCACCGA	61.978	55.000	0.00	0.00	36.17	4.69
258	259	1.003355	CTTGTGCCACCTCACCGAT	60.003	57.895	0.00	0.00	36.17	4.18
259	260	1.003839	TTGTGCCACCTCACCGATC	60.004	57.895	0.00	0.00	36.17	3.69
261	262	3.770040	TGCCACCTCACCGATCCG	61.770	66.667	0.00	0.00	0.00	4.18
263	264	4.873129	CCACCTCACCGATCCGCG	62.873	72.222	0.00	0.00	40.47	6.46
273	274	2.578369	CGATCCGCGGTCTAACTTG	58.422	57.895	27.15	3.80	36.03	3.16
275	276	1.278238	GATCCGCGGTCTAACTTGTG	58.722	55.000	27.15	0.00	0.00	3.33
276	277	0.739813	ATCCGCGGTCTAACTTGTGC	60.740	55.000	27.15	0.00	0.00	4.57
278	279	1.666553	CGCGGTCTAACTTGTGCCA	60.667	57.895	0.00	0.00	0.00	4.92
279	280	1.866925	GCGGTCTAACTTGTGCCAC	59.133	57.895	0.00	0.00	0.00	5.01
281	282	0.034896	CGGTCTAACTTGTGCCACCT	59.965	55.000	0.00	0.00	0.00	4.00
282	283	1.809684	GGTCTAACTTGTGCCACCTC	58.190	55.000	0.00	0.00	0.00	3.85
283	284	1.071699	GGTCTAACTTGTGCCACCTCA	59.928	52.381	0.00	0.00	0.00	3.86
284	285	2.290323	GGTCTAACTTGTGCCACCTCAT	60.290	50.000	0.00	0.00	0.00	2.90
285	286	3.412386	GTCTAACTTGTGCCACCTCATT	58.588	45.455	0.00	0.00	0.00	2.57
286	287	3.189287	GTCTAACTTGTGCCACCTCATTG	59.811	47.826	0.00	0.00	0.00	2.82
287	288	2.363306	AACTTGTGCCACCTCATTGA	57.637	45.000	0.00	0.00	0.00	2.57
288	289	2.592102	ACTTGTGCCACCTCATTGAT	57.408	45.000	0.00	0.00	0.00	2.57
289	290	2.440409	ACTTGTGCCACCTCATTGATC	58.560	47.619	0.00	0.00	0.00	2.92
291	292	0.392863	TGTGCCACCTCATTGATCCG	60.393	55.000	0.00	0.00	0.00	4.18
293	294	2.537560	GCCACCTCATTGATCCGCG	61.538	63.158	0.00	0.00	0.00	6.46
296	297	2.203056	CCTCATTGATCCGCGGCA	60.203	61.111	23.51	11.48	0.00	5.69
297	298	2.537560	CCTCATTGATCCGCGGCAC	61.538	63.158	23.51	17.21	0.00	5.01
298	299	1.815003	CTCATTGATCCGCGGCACA	60.815	57.895	23.51	19.80	0.00	4.57
299	300	1.153188	TCATTGATCCGCGGCACAT	60.153	52.632	23.51	9.35	0.00	3.21
300	301	1.159713	TCATTGATCCGCGGCACATC	61.160	55.000	23.51	19.17	0.00	3.06
302	303	2.329539	ATTGATCCGCGGCACATCCT	62.330	55.000	23.51	5.99	0.00	3.24
303	304	2.203070	GATCCGCGGCACATCCTT	60.203	61.111	23.51	0.00	0.00	3.36
304	305	1.819632	GATCCGCGGCACATCCTTT	60.820	57.895	23.51	0.00	0.00	3.11
306	307	2.257409	ATCCGCGGCACATCCTTTCT	62.257	55.000	23.51	0.00	0.00	2.52
307	308	2.040544	CCGCGGCACATCCTTTCTT	61.041	57.895	14.67	0.00	0.00	2.52
308	309	1.586154	CCGCGGCACATCCTTTCTTT	61.586	55.000	14.67	0.00	0.00	2.52
309	310	0.240945	CGCGGCACATCCTTTCTTTT	59.759	50.000	0.00	0.00	0.00	2.27
311	312	1.701704	CGGCACATCCTTTCTTTTGC	58.298	50.000	0.00	0.00	0.00	3.68
312	313	1.669795	CGGCACATCCTTTCTTTTGCC	60.670	52.381	0.11	0.11	45.05	4.52
313	314	1.338105	GGCACATCCTTTCTTTTGCCC	60.338	52.381	0.00	0.00	43.14	5.36
314	315	1.620323	GCACATCCTTTCTTTTGCCCT	59.380	47.619	0.00	0.00	0.00	5.19
315	316	2.037641	GCACATCCTTTCTTTTGCCCTT	59.962	45.455	0.00	0.00	0.00	3.95
316	317	3.656559	CACATCCTTTCTTTTGCCCTTG	58.343	45.455	0.00	0.00	0.00	3.61
317	318	2.634453	ACATCCTTTCTTTTGCCCTTGG	59.366	45.455	0.00	0.00	0.00	3.61
318	319	2.765689	TCCTTTCTTTTGCCCTTGGA	57.234	45.000	0.00	0.00	0.00	3.53
319	320	2.316108	TCCTTTCTTTTGCCCTTGGAC	58.684	47.619	0.00	0.00	0.00	4.02
321	322	2.038659	CTTTCTTTTGCCCTTGGACCA	58.961	47.619	0.00	0.00	0.00	4.02
322	323	2.397044	TTCTTTTGCCCTTGGACCAT	57.603	45.000	0.00	0.00	0.00	3.55
324	325	0.037046	CTTTTGCCCTTGGACCATGC	60.037	55.000	0.00	0.00	0.00	4.06
325	326	1.479368	TTTTGCCCTTGGACCATGCC	61.479	55.000	0.00	0.00	0.00	4.40
327	328	4.066139	GCCCTTGGACCATGCCCT	62.066	66.667	0.00	0.00	0.00	5.19
328	329	2.276740	CCCTTGGACCATGCCCTC	59.723	66.667	0.00	0.00	0.00	4.30
329	330	2.276740	CCTTGGACCATGCCCTCC	59.723	66.667	0.00	0.69	0.00	4.30
330	331	2.311854	CCTTGGACCATGCCCTCCT	61.312	63.158	0.00	0.00	0.00	3.69
332	333	1.541118	TTGGACCATGCCCTCCTCA	60.541	57.895	0.00	0.00	0.00	3.86
333	334	0.920763	TTGGACCATGCCCTCCTCAT	60.921	55.000	0.00	0.00	0.00	2.90
334	335	0.920763	TGGACCATGCCCTCCTCATT	60.921	55.000	0.00	0.00	0.00	2.57
337	338	2.050144	GACCATGCCCTCCTCATTCTA	58.950	52.381	0.00	0.00	0.00	2.10
338	339	2.439507	GACCATGCCCTCCTCATTCTAA	59.560	50.000	0.00	0.00	0.00	2.10
339	340	2.173569	ACCATGCCCTCCTCATTCTAAC	59.826	50.000	0.00	0.00	0.00	2.34
341	342	3.495806	CCATGCCCTCCTCATTCTAACTC	60.496	52.174	0.00	0.00	0.00	3.01
343	344	1.418264	GCCCTCCTCATTCTAACTCCC	59.582	57.143	0.00	0.00	0.00	4.30
344	345	2.764269	CCCTCCTCATTCTAACTCCCA	58.236	52.381	0.00	0.00	0.00	4.37
345	346	3.321950	CCCTCCTCATTCTAACTCCCAT	58.678	50.000	0.00	0.00	0.00	4.00
346	347	3.326297	CCCTCCTCATTCTAACTCCCATC	59.674	52.174	0.00	0.00	0.00	3.51
347	348	4.230455	CCTCCTCATTCTAACTCCCATCT	58.770	47.826	0.00	0.00	0.00	2.90
348	349	4.283212	CCTCCTCATTCTAACTCCCATCTC	59.717	50.000	0.00	0.00	0.00	2.75
349	350	5.147032	CTCCTCATTCTAACTCCCATCTCT	58.853	45.833	0.00	0.00	0.00	3.10
350	351	6.281190	TCCTCATTCTAACTCCCATCTCTA	57.719	41.667	0.00	0.00	0.00	2.43
351	352	6.868826	TCCTCATTCTAACTCCCATCTCTAT	58.131	40.000	0.00	0.00	0.00	1.98
352	353	8.001300	TCCTCATTCTAACTCCCATCTCTATA	57.999	38.462	0.00	0.00	0.00	1.31
353	354	8.628281	TCCTCATTCTAACTCCCATCTCTATAT	58.372	37.037	0.00	0.00	0.00	0.86
354	355	9.928618	CCTCATTCTAACTCCCATCTCTATATA	57.071	37.037	0.00	0.00	0.00	0.86
367	368	9.073475	CCCATCTCTATATATACTAGAACCAGC	57.927	40.741	0.00	0.00	0.00	4.85
368	369	9.634021	CCATCTCTATATATACTAGAACCAGCA	57.366	37.037	0.00	0.00	0.00	4.41
373	374	9.990868	TCTATATATACTAGAACCAGCAATCCA	57.009	33.333	0.00	0.00	0.00	3.41
376	377	3.567478	ACTAGAACCAGCAATCCATCC	57.433	47.619	0.00	0.00	0.00	3.51
378	379	0.749454	AGAACCAGCAATCCATCCGC	60.749	55.000	0.00	0.00	0.00	5.54
379	380	2.051804	GAACCAGCAATCCATCCGCG	62.052	60.000	0.00	0.00	0.00	6.46
380	381	2.514592	CCAGCAATCCATCCGCGT	60.515	61.111	4.92	0.00	0.00	6.01
381	382	2.711311	CAGCAATCCATCCGCGTG	59.289	61.111	4.92	0.00	0.00	5.34
407	408	4.389576	GCGTGCGACTTGGGCTTG	62.390	66.667	0.00	0.00	0.00	4.01
409	410	3.365265	GTGCGACTTGGGCTTGGG	61.365	66.667	0.00	0.00	0.00	4.12
412	413	4.351054	CGACTTGGGCTTGGGGCT	62.351	66.667	0.00	0.00	41.46	5.19
413	414	2.118294	GACTTGGGCTTGGGGCTT	59.882	61.111	0.00	0.00	41.46	4.35
414	415	2.203684	ACTTGGGCTTGGGGCTTG	60.204	61.111	0.00	0.00	41.46	4.01
415	416	2.999063	CTTGGGCTTGGGGCTTGG	60.999	66.667	0.00	0.00	41.46	3.61
416	417	3.833553	CTTGGGCTTGGGGCTTGGT	62.834	63.158	0.00	0.00	41.46	3.67
418	419	4.299796	GGGCTTGGGGCTTGGTGA	62.300	66.667	0.00	0.00	41.46	4.02
419	420	2.991540	GGCTTGGGGCTTGGTGAC	60.992	66.667	0.00	0.00	41.46	3.67
421	422	2.672996	CTTGGGGCTTGGTGACGG	60.673	66.667	0.00	0.00	0.00	4.79
422	423	3.491598	CTTGGGGCTTGGTGACGGT	62.492	63.158	0.00	0.00	0.00	4.83
423	424	3.783362	TTGGGGCTTGGTGACGGTG	62.783	63.158	0.00	0.00	0.00	4.94
424	425	3.948719	GGGGCTTGGTGACGGTGA	61.949	66.667	0.00	0.00	0.00	4.02
427	428	2.358737	GCTTGGTGACGGTGAGGG	60.359	66.667	0.00	0.00	0.00	4.30
428	429	3.148084	CTTGGTGACGGTGAGGGT	58.852	61.111	0.00	0.00	0.00	4.34
430	431	1.754380	CTTGGTGACGGTGAGGGTGA	61.754	60.000	0.00	0.00	0.00	4.02
431	432	1.754380	TTGGTGACGGTGAGGGTGAG	61.754	60.000	0.00	0.00	0.00	3.51
432	433	2.657237	GTGACGGTGAGGGTGAGG	59.343	66.667	0.00	0.00	0.00	3.86
433	434	2.603473	TGACGGTGAGGGTGAGGG	60.603	66.667	0.00	0.00	0.00	4.30
434	435	2.603776	GACGGTGAGGGTGAGGGT	60.604	66.667	0.00	0.00	0.00	4.34
435	436	2.923035	ACGGTGAGGGTGAGGGTG	60.923	66.667	0.00	0.00	0.00	4.61
436	437	2.603473	CGGTGAGGGTGAGGGTGA	60.603	66.667	0.00	0.00	0.00	4.02
438	439	2.294078	GGTGAGGGTGAGGGTGAGG	61.294	68.421	0.00	0.00	0.00	3.86
439	440	2.122729	TGAGGGTGAGGGTGAGGG	59.877	66.667	0.00	0.00	0.00	4.30
440	441	2.122954	GAGGGTGAGGGTGAGGGT	59.877	66.667	0.00	0.00	0.00	4.34
441	442	1.390926	GAGGGTGAGGGTGAGGGTA	59.609	63.158	0.00	0.00	0.00	3.69
442	443	0.976590	GAGGGTGAGGGTGAGGGTAC	60.977	65.000	0.00	0.00	0.00	3.34
444	445	2.356780	GGTGAGGGTGAGGGTACGG	61.357	68.421	0.00	0.00	0.00	4.02
446	447	3.834799	GAGGGTGAGGGTACGGCG	61.835	72.222	4.80	4.80	0.00	6.46
447	448	4.371417	AGGGTGAGGGTACGGCGA	62.371	66.667	16.62	0.00	0.00	5.54
448	449	4.139234	GGGTGAGGGTACGGCGAC	62.139	72.222	16.62	7.47	0.00	5.19
466	467	4.994201	GGCGACGACACGACAGCA	62.994	66.667	0.00	0.00	41.34	4.41
468	469	2.251371	CGACGACACGACAGCAGA	59.749	61.111	0.00	0.00	35.09	4.26
471	472	0.109735	GACGACACGACAGCAGATCA	60.110	55.000	0.00	0.00	0.00	2.92
473	474	1.398762	CGACACGACAGCAGATCACG	61.399	60.000	0.00	0.00	0.00	4.35
474	475	1.678269	GACACGACAGCAGATCACGC	61.678	60.000	0.00	0.00	0.00	5.34
475	476	2.125912	ACGACAGCAGATCACGCC	60.126	61.111	3.70	0.00	0.00	5.68
482	483	1.815421	GCAGATCACGCCGTCCATT	60.815	57.895	0.00	0.00	0.00	3.16
483	484	1.766143	GCAGATCACGCCGTCCATTC	61.766	60.000	0.00	0.00	0.00	2.67
484	485	1.144057	AGATCACGCCGTCCATTCC	59.856	57.895	0.00	0.00	0.00	3.01
486	487	2.587322	GATCACGCCGTCCATTCCCA	62.587	60.000	0.00	0.00	0.00	4.37
487	488	2.593468	ATCACGCCGTCCATTCCCAG	62.593	60.000	0.00	0.00	0.00	4.45
488	489	3.319198	ACGCCGTCCATTCCCAGT	61.319	61.111	0.00	0.00	0.00	4.00
489	490	2.046314	CGCCGTCCATTCCCAGTT	60.046	61.111	0.00	0.00	0.00	3.16
491	492	2.106683	GCCGTCCATTCCCAGTTCG	61.107	63.158	0.00	0.00	0.00	3.95
492	493	1.594833	CCGTCCATTCCCAGTTCGA	59.405	57.895	0.00	0.00	0.00	3.71
493	494	0.460284	CCGTCCATTCCCAGTTCGAG	60.460	60.000	0.00	0.00	0.00	4.04
494	495	1.084370	CGTCCATTCCCAGTTCGAGC	61.084	60.000	0.00	0.00	0.00	5.03
495	496	0.250513	GTCCATTCCCAGTTCGAGCT	59.749	55.000	0.00	0.00	0.00	4.09
496	497	0.984230	TCCATTCCCAGTTCGAGCTT	59.016	50.000	0.00	0.00	0.00	3.74
497	498	1.066143	TCCATTCCCAGTTCGAGCTTC	60.066	52.381	0.00	0.00	0.00	3.86
501	502	1.633774	TCCCAGTTCGAGCTTCTTCT	58.366	50.000	0.00	0.00	0.00	2.85
502	503	1.971357	TCCCAGTTCGAGCTTCTTCTT	59.029	47.619	0.00	0.00	0.00	2.52
503	504	2.028930	TCCCAGTTCGAGCTTCTTCTTC	60.029	50.000	0.00	0.00	0.00	2.87
505	506	2.608261	CCAGTTCGAGCTTCTTCTTCGT	60.608	50.000	0.00	0.00	0.00	3.85
507	508	3.491267	CAGTTCGAGCTTCTTCTTCGTTT	59.509	43.478	0.00	0.00	0.00	3.60
508	509	3.491267	AGTTCGAGCTTCTTCTTCGTTTG	59.509	43.478	0.00	0.00	0.00	2.93
509	510	3.093717	TCGAGCTTCTTCTTCGTTTGT	57.906	42.857	0.00	0.00	0.00	2.83
510	511	3.454375	TCGAGCTTCTTCTTCGTTTGTT	58.546	40.909	0.00	0.00	0.00	2.83
511	512	3.489785	TCGAGCTTCTTCTTCGTTTGTTC	59.510	43.478	0.00	0.00	0.00	3.18
512	513	3.363084	CGAGCTTCTTCTTCGTTTGTTCC	60.363	47.826	0.00	0.00	0.00	3.62
513	514	2.879026	AGCTTCTTCTTCGTTTGTTCCC	59.121	45.455	0.00	0.00	0.00	3.97
514	515	2.879026	GCTTCTTCTTCGTTTGTTCCCT	59.121	45.455	0.00	0.00	0.00	4.20
516	517	4.381411	CTTCTTCTTCGTTTGTTCCCTCT	58.619	43.478	0.00	0.00	0.00	3.69
519	520	1.958579	TCTTCGTTTGTTCCCTCTCGA	59.041	47.619	0.00	0.00	0.00	4.04
520	521	2.030185	TCTTCGTTTGTTCCCTCTCGAG	60.030	50.000	5.93	5.93	0.00	4.04
535	536	4.498345	CCTCTCGAGGTGATAACAAGTAGC	60.498	50.000	13.56	0.00	43.61	3.58
536	537	4.270834	TCTCGAGGTGATAACAAGTAGCT	58.729	43.478	13.56	0.00	0.00	3.32
539	540	4.461431	TCGAGGTGATAACAAGTAGCTGAA	59.539	41.667	0.00	0.00	0.00	3.02
540	541	4.800993	CGAGGTGATAACAAGTAGCTGAAG	59.199	45.833	0.00	0.00	0.00	3.02
541	542	5.091261	AGGTGATAACAAGTAGCTGAAGG	57.909	43.478	0.00	0.00	0.00	3.46
542	543	3.623510	GGTGATAACAAGTAGCTGAAGGC	59.376	47.826	0.00	0.00	42.19	4.35
568	569	2.399611	GCGGGAAGCGACGAATTG	59.600	61.111	0.00	0.00	35.41	2.32
569	570	2.098233	GCGGGAAGCGACGAATTGA	61.098	57.895	0.00	0.00	35.41	2.57
573	574	2.739293	GGAAGCGACGAATTGATTCC	57.261	50.000	0.00	0.00	45.39	3.01
575	576	3.039670	GAAGCGACGAATTGATTCCAC	57.960	47.619	0.00	0.00	29.60	4.02
576	577	2.386661	AGCGACGAATTGATTCCACT	57.613	45.000	0.00	0.00	33.28	4.00
577	578	2.002586	AGCGACGAATTGATTCCACTG	58.997	47.619	0.00	0.00	33.28	3.66
578	579	1.732259	GCGACGAATTGATTCCACTGT	59.268	47.619	0.00	0.00	33.28	3.55
579	580	2.474526	GCGACGAATTGATTCCACTGTG	60.475	50.000	0.00	0.00	33.28	3.66
580	581	2.993220	CGACGAATTGATTCCACTGTGA	59.007	45.455	9.86	0.00	33.28	3.58
582	583	3.997021	GACGAATTGATTCCACTGTGAGT	59.003	43.478	9.86	0.00	33.28	3.41
583	584	4.389374	ACGAATTGATTCCACTGTGAGTT	58.611	39.130	9.86	0.00	33.28	3.01
584	585	4.821805	ACGAATTGATTCCACTGTGAGTTT	59.178	37.500	9.86	0.00	33.28	2.66
585	586	5.299279	ACGAATTGATTCCACTGTGAGTTTT	59.701	36.000	9.86	0.00	33.28	2.43
586	587	5.853282	CGAATTGATTCCACTGTGAGTTTTC	59.147	40.000	9.86	2.76	33.28	2.29
587	588	6.513230	CGAATTGATTCCACTGTGAGTTTTCA	60.513	38.462	9.86	2.51	33.28	2.69
588	589	6.713762	ATTGATTCCACTGTGAGTTTTCAA	57.286	33.333	9.86	10.74	34.49	2.69
589	590	6.522625	TTGATTCCACTGTGAGTTTTCAAA	57.477	33.333	9.86	0.00	34.49	2.69
590	591	6.713762	TGATTCCACTGTGAGTTTTCAAAT	57.286	33.333	9.86	0.00	34.49	2.32
591	592	6.738114	TGATTCCACTGTGAGTTTTCAAATC	58.262	36.000	9.86	4.79	34.49	2.17
594	595	4.580167	TCCACTGTGAGTTTTCAAATCAGG	59.420	41.667	9.86	0.00	34.49	3.86
595	596	4.293415	CACTGTGAGTTTTCAAATCAGGC	58.707	43.478	0.32	0.00	34.49	4.85
596	597	3.953612	ACTGTGAGTTTTCAAATCAGGCA	59.046	39.130	0.00	0.00	34.49	4.75
598	599	4.935702	TGTGAGTTTTCAAATCAGGCAAG	58.064	39.130	0.00	0.00	34.49	4.01
599	600	4.402155	TGTGAGTTTTCAAATCAGGCAAGT	59.598	37.500	0.00	0.00	34.49	3.16
600	601	4.978580	GTGAGTTTTCAAATCAGGCAAGTC	59.021	41.667	0.00	0.00	34.49	3.01
602	603	3.960102	AGTTTTCAAATCAGGCAAGTCCA	59.040	39.130	0.00	0.00	37.29	4.02
603	604	4.038402	AGTTTTCAAATCAGGCAAGTCCAG	59.962	41.667	0.00	0.00	37.29	3.86
604	605	1.538047	TCAAATCAGGCAAGTCCAGC	58.462	50.000	0.00	0.00	37.29	4.85
605	606	1.074405	TCAAATCAGGCAAGTCCAGCT	59.926	47.619	0.00	0.00	37.29	4.24
607	608	0.034670	AATCAGGCAAGTCCAGCTCC	60.035	55.000	0.00	0.00	37.29	4.70
608	609	1.203441	ATCAGGCAAGTCCAGCTCCA	61.203	55.000	0.00	0.00	37.29	3.86
609	610	1.203441	TCAGGCAAGTCCAGCTCCAT	61.203	55.000	0.00	0.00	37.29	3.41
610	611	0.543277	CAGGCAAGTCCAGCTCCATA	59.457	55.000	0.00	0.00	37.29	2.74
612	613	0.464554	GGCAAGTCCAGCTCCATACC	60.465	60.000	0.00	0.00	34.01	2.73
613	614	0.253044	GCAAGTCCAGCTCCATACCA	59.747	55.000	0.00	0.00	0.00	3.25
614	615	1.340017	GCAAGTCCAGCTCCATACCAA	60.340	52.381	0.00	0.00	0.00	3.67
616	617	1.958288	AGTCCAGCTCCATACCAACT	58.042	50.000	0.00	0.00	0.00	3.16
617	618	1.556911	AGTCCAGCTCCATACCAACTG	59.443	52.381	0.00	0.00	0.00	3.16
618	619	0.253044	TCCAGCTCCATACCAACTGC	59.747	55.000	0.00	0.00	0.00	4.40
619	620	0.254178	CCAGCTCCATACCAACTGCT	59.746	55.000	0.00	0.00	0.00	4.24
622	623	1.709147	GCTCCATACCAACTGCTGCG	61.709	60.000	0.00	0.00	0.00	5.18
623	624	0.391661	CTCCATACCAACTGCTGCGT	60.392	55.000	0.00	0.00	0.00	5.24
624	625	0.899019	TCCATACCAACTGCTGCGTA	59.101	50.000	0.00	0.00	0.00	4.42
625	626	1.134818	TCCATACCAACTGCTGCGTAG	60.135	52.381	0.00	0.00	0.00	3.51
627	628	1.134818	CATACCAACTGCTGCGTAGGA	60.135	52.381	1.76	0.00	0.00	2.94
628	629	1.191535	TACCAACTGCTGCGTAGGAT	58.808	50.000	1.76	0.00	0.00	3.24
630	631	0.176680	CCAACTGCTGCGTAGGATCT	59.823	55.000	1.76	0.00	0.00	2.75
631	632	1.565305	CAACTGCTGCGTAGGATCTC	58.435	55.000	1.76	0.00	0.00	2.75
632	633	1.135915	CAACTGCTGCGTAGGATCTCT	59.864	52.381	1.76	0.00	0.00	3.10
633	634	1.028905	ACTGCTGCGTAGGATCTCTC	58.971	55.000	1.76	0.00	0.00	3.20
634	635	1.028130	CTGCTGCGTAGGATCTCTCA	58.972	55.000	1.76	0.00	0.00	3.27
635	636	1.406898	CTGCTGCGTAGGATCTCTCAA	59.593	52.381	1.76	0.00	0.00	3.02
636	637	1.135139	TGCTGCGTAGGATCTCTCAAC	59.865	52.381	1.76	0.00	0.00	3.18
640	641	2.025155	GCGTAGGATCTCTCAACTCCA	58.975	52.381	0.00	0.00	0.00	3.86
641	642	2.223618	GCGTAGGATCTCTCAACTCCAC	60.224	54.545	0.00	0.00	0.00	4.02
646	647	2.461695	GATCTCTCAACTCCACCTCCA	58.538	52.381	0.00	0.00	0.00	3.86
647	648	2.630889	TCTCTCAACTCCACCTCCAT	57.369	50.000	0.00	0.00	0.00	3.41
648	649	2.907892	TCTCTCAACTCCACCTCCATT	58.092	47.619	0.00	0.00	0.00	3.16
649	650	3.251484	TCTCTCAACTCCACCTCCATTT	58.749	45.455	0.00	0.00	0.00	2.32
651	652	2.040278	TCTCAACTCCACCTCCATTTGG	59.960	50.000	0.00	0.00	0.00	3.28
652	653	0.890683	CAACTCCACCTCCATTTGGC	59.109	55.000	0.00	0.00	32.37	4.52
653	654	0.779997	AACTCCACCTCCATTTGGCT	59.220	50.000	0.00	0.00	32.37	4.75
655	656	0.394899	CTCCACCTCCATTTGGCTCC	60.395	60.000	0.00	0.00	32.37	4.70
658	659	0.394899	CACCTCCATTTGGCTCCCTC	60.395	60.000	0.00	0.00	34.44	4.30
659	660	0.846427	ACCTCCATTTGGCTCCCTCA	60.846	55.000	0.00	0.00	34.44	3.86
674	675	1.681166	CCCTCAAACTCCAGCTCCATG	60.681	57.143	0.00	0.00	0.00	3.66
692	693	1.243342	TGCCAACTGCTGCGCTTAAT	61.243	50.000	9.73	0.00	42.00	1.40
694	695	1.132262	GCCAACTGCTGCGCTTAATAA	59.868	47.619	9.73	0.00	36.87	1.40
698	699	4.225984	CAACTGCTGCGCTTAATAAAACA	58.774	39.130	9.73	0.00	0.00	2.83
699	700	4.497473	ACTGCTGCGCTTAATAAAACAA	57.503	36.364	9.73	0.00	0.00	2.83
810	811	1.444933	TGGACAAGTGATCCCAAGGT	58.555	50.000	0.00	0.00	35.12	3.50
811	812	1.073763	TGGACAAGTGATCCCAAGGTG	59.926	52.381	0.00	0.00	35.12	4.00
812	813	1.351017	GGACAAGTGATCCCAAGGTGA	59.649	52.381	0.00	0.00	0.00	4.02
813	814	2.616510	GGACAAGTGATCCCAAGGTGAG	60.617	54.545	0.00	0.00	0.00	3.51
814	815	1.352352	ACAAGTGATCCCAAGGTGAGG	59.648	52.381	0.00	0.00	0.00	3.86
815	816	1.352352	CAAGTGATCCCAAGGTGAGGT	59.648	52.381	0.00	0.00	0.00	3.85
816	817	1.747444	AGTGATCCCAAGGTGAGGTT	58.253	50.000	0.00	0.00	0.00	3.50
818	819	0.698238	TGATCCCAAGGTGAGGTTGG	59.302	55.000	0.00	0.00	43.68	3.77
819	820	0.681243	GATCCCAAGGTGAGGTTGGC	60.681	60.000	0.00	0.00	42.85	4.52
820	821	1.142688	ATCCCAAGGTGAGGTTGGCT	61.143	55.000	0.00	0.00	42.85	4.75
821	822	1.604593	CCCAAGGTGAGGTTGGCTG	60.605	63.158	0.00	0.00	42.85	4.85
824	825	0.890996	CAAGGTGAGGTTGGCTGGAC	60.891	60.000	0.00	0.00	0.00	4.02
825	826	1.352622	AAGGTGAGGTTGGCTGGACA	61.353	55.000	0.00	0.00	0.00	4.02
826	827	1.150536	GGTGAGGTTGGCTGGACAA	59.849	57.895	0.00	0.00	0.00	3.18
827	828	0.251341	GGTGAGGTTGGCTGGACAAT	60.251	55.000	0.00	0.00	32.24	2.71
828	829	0.883833	GTGAGGTTGGCTGGACAATG	59.116	55.000	0.00	0.00	32.24	2.82
829	830	0.770499	TGAGGTTGGCTGGACAATGA	59.230	50.000	0.00	0.00	32.24	2.57
831	832	0.478072	AGGTTGGCTGGACAATGACA	59.522	50.000	0.00	0.00	32.24	3.58
832	833	1.133513	AGGTTGGCTGGACAATGACAA	60.134	47.619	0.00	0.00	32.24	3.18
834	835	2.064434	TTGGCTGGACAATGACAACA	57.936	45.000	0.00	0.00	0.00	3.33
836	837	2.596346	TGGCTGGACAATGACAACAAT	58.404	42.857	0.00	0.00	0.00	2.71
837	838	2.296752	TGGCTGGACAATGACAACAATG	59.703	45.455	0.00	0.00	33.61	2.82
877	878	1.354031	TGGGGGTCACGTGTAGTACTA	59.646	52.381	16.51	0.00	0.00	1.82
878	879	1.745653	GGGGGTCACGTGTAGTACTAC	59.254	57.143	23.58	23.58	36.63	2.73
879	880	2.619074	GGGGGTCACGTGTAGTACTACT	60.619	54.545	28.56	10.48	37.00	2.57
880	881	3.084786	GGGGTCACGTGTAGTACTACTT	58.915	50.000	28.56	13.71	37.00	2.24
881	882	3.507622	GGGGTCACGTGTAGTACTACTTT	59.492	47.826	28.56	13.40	37.00	2.66
883	884	5.392057	GGGGTCACGTGTAGTACTACTTTAC	60.392	48.000	28.56	19.25	37.00	2.01
884	885	5.181245	GGGTCACGTGTAGTACTACTTTACA	59.819	44.000	28.56	12.28	37.00	2.41
886	887	6.073003	GGTCACGTGTAGTACTACTTTACAGT	60.073	42.308	28.56	18.23	37.00	3.55
887	888	7.355778	GTCACGTGTAGTACTACTTTACAGTT	58.644	38.462	28.56	7.85	37.00	3.16
888	889	7.532209	GTCACGTGTAGTACTACTTTACAGTTC	59.468	40.741	28.56	13.90	37.00	3.01
889	890	7.442364	TCACGTGTAGTACTACTTTACAGTTCT	59.558	37.037	28.56	2.40	37.00	3.01
890	891	7.533222	CACGTGTAGTACTACTTTACAGTTCTG	59.467	40.741	28.56	10.98	37.00	3.02
892	893	7.365741	GTGTAGTACTACTTTACAGTTCTGCA	58.634	38.462	28.56	5.47	35.04	4.41
910	911	1.457303	GCATGTATTGCGTCGAGGATC	59.543	52.381	9.75	0.00	42.54	3.36
936	937	6.069331	ACTCCCGCGATCCAACTATATATAT	58.931	40.000	8.23	0.00	0.00	0.86
937	938	7.229308	ACTCCCGCGATCCAACTATATATATA	58.771	38.462	8.23	2.49	0.00	0.86
938	939	7.390996	ACTCCCGCGATCCAACTATATATATAG	59.609	40.741	22.88	22.88	41.08	1.31
939	940	7.455891	TCCCGCGATCCAACTATATATATAGA	58.544	38.462	28.76	12.55	38.30	1.98
940	941	7.606839	TCCCGCGATCCAACTATATATATAGAG	59.393	40.741	28.76	20.96	38.30	2.43
942	943	7.094762	CCGCGATCCAACTATATATATAGAGCA	60.095	40.741	28.76	12.70	38.30	4.26
943	944	8.290325	CGCGATCCAACTATATATATAGAGCAA	58.710	37.037	28.76	15.35	38.30	3.91
973	974	4.636206	ACAAGAAAATCCAATCTACTCGCC	59.364	41.667	0.00	0.00	0.00	5.54
974	975	4.762289	AGAAAATCCAATCTACTCGCCT	57.238	40.909	0.00	0.00	0.00	5.52
975	976	4.698575	AGAAAATCCAATCTACTCGCCTC	58.301	43.478	0.00	0.00	0.00	4.70
976	977	3.477210	AAATCCAATCTACTCGCCTCC	57.523	47.619	0.00	0.00	0.00	4.30
1024	1031	3.999297	GACGACGGCTCCTCCTCCT	62.999	68.421	0.00	0.00	0.00	3.69
1436	3292	4.025647	CGCCATCGAAAATAAGGTTCTCTC	60.026	45.833	0.00	0.00	38.10	3.20
1766	3774	9.547753	CAACATGTACTATTTGCTATAGGTTCT	57.452	33.333	0.00	0.00	0.00	3.01
1909	3917	2.900546	ACGGAGAGGAGAAAACTGATGT	59.099	45.455	0.00	0.00	0.00	3.06
1996	4004	2.763710	TGGCTATCCGGAGCTGCA	60.764	61.111	21.94	8.87	42.43	4.41
2083	4091	3.352748	TCCTCCCACCCTCGCCTA	61.353	66.667	0.00	0.00	0.00	3.93
2232	4252	2.441901	CTCGGCCTGGAGCTCTCT	60.442	66.667	14.64	0.00	43.05	3.10
2233	4253	1.152860	CTCGGCCTGGAGCTCTCTA	60.153	63.158	14.64	0.00	43.05	2.43
2234	4254	0.753479	CTCGGCCTGGAGCTCTCTAA	60.753	60.000	14.64	0.00	43.05	2.10
2247	4267	1.205893	CTCTCTAAGGCACGCTTCCTT	59.794	52.381	8.26	8.26	45.29	3.36
2431	4463	1.982395	TCGACCATCGAAGGGCTGT	60.982	57.895	11.42	0.00	46.90	4.40
2508	4540	1.139853	CAGCTCATGGAGGGTAGGAAC	59.860	57.143	0.00	0.00	0.00	3.62
2526	4558	4.408821	GTCGGGATGCAGGTGCCA	62.409	66.667	0.00	0.00	41.18	4.92
2552	4584	1.064208	CGAGAGTGACGGATCGTTCAT	59.936	52.381	0.00	0.00	41.37	2.57
2713	4745	0.107643	GGGGCTCAGATCCTACAAGC	59.892	60.000	0.00	0.00	0.00	4.01
2757	4799	5.445069	TCCCCCATGATACATGTAACTTTG	58.555	41.667	10.14	9.17	0.00	2.77
2789	4899	7.692705	GTGAAATTTGATCTAGCGGTAACTTTC	59.307	37.037	0.00	0.04	0.00	2.62
2959	5673	6.350277	CCCTACAAGAAAGATATAGGGTAGCG	60.350	46.154	6.50	0.00	44.93	4.26
2965	5679	1.817447	AGATATAGGGTAGCGGCGAAC	59.183	52.381	12.98	7.80	0.00	3.95
2966	5680	1.817447	GATATAGGGTAGCGGCGAACT	59.183	52.381	12.98	0.56	0.00	3.01
2970	5684	1.520120	GGGTAGCGGCGAACTAACC	60.520	63.158	12.98	12.32	40.18	2.85
2992	5706	1.913419	GTGGTTGGATGGTTAGAGGGA	59.087	52.381	0.00	0.00	0.00	4.20
2995	5709	2.092914	GGTTGGATGGTTAGAGGGACAG	60.093	54.545	0.00	0.00	0.00	3.51
3008	5722	1.527370	GGACAGTGGTATCCCCAGC	59.473	63.158	0.00	0.00	46.45	4.85
3030	5744	2.423538	CCATCAGGGTTTCACGATTTCC	59.576	50.000	0.00	0.00	0.00	3.13
3033	5747	0.399075	AGGGTTTCACGATTTCCGGT	59.601	50.000	0.00	0.00	43.93	5.28
3034	5748	0.519961	GGGTTTCACGATTTCCGGTG	59.480	55.000	0.00	0.00	43.93	4.94
3037	5751	3.264104	GGTTTCACGATTTCCGGTGATA	58.736	45.455	0.00	0.00	43.93	2.15
3058	5772	1.625315	CACATTCAGTGGGAGGAGACA	59.375	52.381	0.00	0.00	44.69	3.41
3085	5799	1.807886	GATGACGAGGTGCCTACGT	59.192	57.895	12.85	12.85	42.84	3.57
3090	5804	1.445582	CGAGGTGCCTACGTTGACC	60.446	63.158	0.00	0.00	0.00	4.02
3101	5815	4.152938	GCCTACGTTGACCTCGTAAATTTT	59.847	41.667	0.00	0.00	41.92	1.82
3129	5843	4.279922	TGATATATTGGCTCGGTCTTTCGA	59.720	41.667	0.00	0.00	37.60	3.71
3132	5846	0.677288	TTGGCTCGGTCTTTCGAAGA	59.323	50.000	0.00	0.00	38.77	2.87
3149	5863	3.574396	CGAAGATGCTCATAAGGGTAGGA	59.426	47.826	0.00	0.00	0.00	2.94
3162	5876	0.320421	GGTAGGATGTGCGTGTGTGT	60.320	55.000	0.00	0.00	0.00	3.72
3175	5889	3.404899	CGTGTGTGTGTTTAATAGGGGT	58.595	45.455	0.00	0.00	0.00	4.95
3186	5900	5.045505	TGTTTAATAGGGGTGAGTGTATGCA	60.046	40.000	0.00	0.00	0.00	3.96
3213	5927	7.161900	CGTATATGAATGTTTGCGTTTGTACTG	59.838	37.037	0.00	0.00	0.00	2.74
3215	5929	4.593157	TGAATGTTTGCGTTTGTACTGTC	58.407	39.130	0.00	0.00	0.00	3.51
3333	6047	5.467735	TGGCATTCTTCATGAATCAGTATCG	59.532	40.000	8.96	0.00	43.00	2.92
3444	6158	6.721704	AAATCATGGAAGAAAGAATAGGGC	57.278	37.500	0.00	0.00	0.00	5.19
3455	6169	7.817418	AGAAAGAATAGGGCGCAATAATAAA	57.183	32.000	10.83	0.00	0.00	1.40
3559	6273	3.373110	GCCCCTTTCATCACCCTCTAAAT	60.373	47.826	0.00	0.00	0.00	1.40
3562	6276	6.240176	GCCCCTTTCATCACCCTCTAAATATA	60.240	42.308	0.00	0.00	0.00	0.86
3614	6328	9.685276	ACATATTCTCACCACTTGATCAAAATA	57.315	29.630	9.88	8.24	32.17	1.40
3639	6353	3.107402	TCCTCTCATGTGCTTCTAGGT	57.893	47.619	0.00	0.00	0.00	3.08

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
11	12	9.463443	CAATTGTTCTTTTTCGGAGTTTCTAAT	57.537	29.630	0.00	0.00	0.00	1.73
12	13	8.679100	TCAATTGTTCTTTTTCGGAGTTTCTAA	58.321	29.630	5.13	0.00	0.00	2.10
14	15	7.095695	TCAATTGTTCTTTTTCGGAGTTTCT	57.904	32.000	5.13	0.00	0.00	2.52
16	17	8.716646	AAATCAATTGTTCTTTTTCGGAGTTT	57.283	26.923	5.13	0.00	0.00	2.66
17	18	8.716646	AAAATCAATTGTTCTTTTTCGGAGTT	57.283	26.923	5.13	0.00	0.00	3.01
19	20	8.816144	TCAAAAATCAATTGTTCTTTTTCGGAG	58.184	29.630	17.70	11.48	30.58	4.63
20	21	8.599774	GTCAAAAATCAATTGTTCTTTTTCGGA	58.400	29.630	17.70	13.39	30.58	4.55
21	22	8.386606	TGTCAAAAATCAATTGTTCTTTTTCGG	58.613	29.630	17.70	12.11	30.58	4.30
22	23	9.919348	ATGTCAAAAATCAATTGTTCTTTTTCG	57.081	25.926	17.70	14.80	30.58	3.46
26	27	9.264719	GAGGATGTCAAAAATCAATTGTTCTTT	57.735	29.630	5.13	1.93	0.00	2.52
27	28	7.596248	CGAGGATGTCAAAAATCAATTGTTCTT	59.404	33.333	5.13	0.00	0.00	2.52
28	29	7.040478	TCGAGGATGTCAAAAATCAATTGTTCT	60.040	33.333	5.13	0.00	0.00	3.01
30	31	6.980593	TCGAGGATGTCAAAAATCAATTGTT	58.019	32.000	5.13	0.00	0.00	2.83
31	32	6.573664	TCGAGGATGTCAAAAATCAATTGT	57.426	33.333	5.13	0.00	0.00	2.71
32	33	7.307694	TCTTCGAGGATGTCAAAAATCAATTG	58.692	34.615	0.00	0.00	0.00	2.32
33	34	7.452880	TCTTCGAGGATGTCAAAAATCAATT	57.547	32.000	0.00	0.00	0.00	2.32
34	35	7.452880	TTCTTCGAGGATGTCAAAAATCAAT	57.547	32.000	0.00	0.00	0.00	2.57
35	36	6.875948	TTCTTCGAGGATGTCAAAAATCAA	57.124	33.333	0.00	0.00	0.00	2.57
38	39	5.241506	TGCTTTCTTCGAGGATGTCAAAAAT	59.758	36.000	0.00	0.00	0.00	1.82
39	40	4.578516	TGCTTTCTTCGAGGATGTCAAAAA	59.421	37.500	0.00	0.00	0.00	1.94
41	42	3.738982	TGCTTTCTTCGAGGATGTCAAA	58.261	40.909	0.00	0.00	0.00	2.69
42	43	3.401033	TGCTTTCTTCGAGGATGTCAA	57.599	42.857	0.00	0.00	0.00	3.18
43	44	3.401033	TTGCTTTCTTCGAGGATGTCA	57.599	42.857	0.00	0.00	0.00	3.58
45	46	6.173339	TCTATTTTGCTTTCTTCGAGGATGT	58.827	36.000	0.00	0.00	0.00	3.06
46	47	6.668541	TCTATTTTGCTTTCTTCGAGGATG	57.331	37.500	0.00	0.00	0.00	3.51
47	48	7.872113	ATTCTATTTTGCTTTCTTCGAGGAT	57.128	32.000	0.00	0.00	0.00	3.24
48	49	7.011482	GCTATTCTATTTTGCTTTCTTCGAGGA	59.989	37.037	0.00	0.00	0.00	3.71
51	52	7.849804	AGCTATTCTATTTTGCTTTCTTCGA	57.150	32.000	0.00	0.00	0.00	3.71
52	53	8.902040	AAAGCTATTCTATTTTGCTTTCTTCG	57.098	30.769	0.00	0.00	46.73	3.79
115	116	9.507329	TCAAGTCAGTCAAAGCTATTCTATTTT	57.493	29.630	0.00	0.00	0.00	1.82
116	117	9.507329	TTCAAGTCAGTCAAAGCTATTCTATTT	57.493	29.630	0.00	0.00	0.00	1.40
117	118	9.507329	TTTCAAGTCAGTCAAAGCTATTCTATT	57.493	29.630	0.00	0.00	0.00	1.73
118	119	9.507329	TTTTCAAGTCAGTCAAAGCTATTCTAT	57.493	29.630	0.00	0.00	0.00	1.98
119	120	8.902540	TTTTCAAGTCAGTCAAAGCTATTCTA	57.097	30.769	0.00	0.00	0.00	2.10
120	121	7.040823	CCTTTTCAAGTCAGTCAAAGCTATTCT	60.041	37.037	0.00	0.00	0.00	2.40
121	122	7.080724	CCTTTTCAAGTCAGTCAAAGCTATTC	58.919	38.462	0.00	0.00	0.00	1.75
122	123	6.547510	ACCTTTTCAAGTCAGTCAAAGCTATT	59.452	34.615	0.00	0.00	0.00	1.73
123	124	6.064717	ACCTTTTCAAGTCAGTCAAAGCTAT	58.935	36.000	0.00	0.00	0.00	2.97
125	126	4.273318	ACCTTTTCAAGTCAGTCAAAGCT	58.727	39.130	0.00	0.00	0.00	3.74
126	127	4.639135	ACCTTTTCAAGTCAGTCAAAGC	57.361	40.909	0.00	0.00	0.00	3.51
127	128	7.321745	ACTAACCTTTTCAAGTCAGTCAAAG	57.678	36.000	0.00	0.00	0.00	2.77
129	130	7.696992	AAACTAACCTTTTCAAGTCAGTCAA	57.303	32.000	0.00	0.00	0.00	3.18
130	131	8.044908	AGTAAACTAACCTTTTCAAGTCAGTCA	58.955	33.333	0.00	0.00	0.00	3.41
131	132	8.434733	AGTAAACTAACCTTTTCAAGTCAGTC	57.565	34.615	0.00	0.00	0.00	3.51
158	159	6.983906	ACATTGGTCTCTCCATTTCTTTTT	57.016	33.333	0.00	0.00	46.60	1.94
159	160	8.477419	TTTACATTGGTCTCTCCATTTCTTTT	57.523	30.769	0.00	0.00	46.60	2.27
160	161	8.360390	GTTTTACATTGGTCTCTCCATTTCTTT	58.640	33.333	0.00	0.00	46.60	2.52
161	162	7.505585	TGTTTTACATTGGTCTCTCCATTTCTT	59.494	33.333	0.00	0.00	46.60	2.52
162	163	7.004086	TGTTTTACATTGGTCTCTCCATTTCT	58.996	34.615	0.00	0.00	46.60	2.52
163	164	7.214467	TGTTTTACATTGGTCTCTCCATTTC	57.786	36.000	0.00	0.00	46.60	2.17
164	165	7.595819	TTGTTTTACATTGGTCTCTCCATTT	57.404	32.000	0.00	0.00	46.60	2.32
165	166	7.595819	TTTGTTTTACATTGGTCTCTCCATT	57.404	32.000	0.00	0.00	46.60	3.16
166	167	7.595819	TTTTGTTTTACATTGGTCTCTCCAT	57.404	32.000	0.00	0.00	46.60	3.41
167	168	7.340743	TCTTTTTGTTTTACATTGGTCTCTCCA	59.659	33.333	0.00	0.00	45.60	3.86
168	169	7.712797	TCTTTTTGTTTTACATTGGTCTCTCC	58.287	34.615	0.00	0.00	0.00	3.71
169	170	9.581099	TTTCTTTTTGTTTTACATTGGTCTCTC	57.419	29.630	0.00	0.00	0.00	3.20
170	171	9.936759	TTTTCTTTTTGTTTTACATTGGTCTCT	57.063	25.926	0.00	0.00	0.00	3.10
171	172	9.967245	GTTTTCTTTTTGTTTTACATTGGTCTC	57.033	29.630	0.00	0.00	0.00	3.36
172	173	9.719355	AGTTTTCTTTTTGTTTTACATTGGTCT	57.281	25.926	0.00	0.00	0.00	3.85
184	185	9.391006	GGAAAGGGAATTAGTTTTCTTTTTGTT	57.609	29.630	7.53	0.00	31.83	2.83
185	186	8.768397	AGGAAAGGGAATTAGTTTTCTTTTTGT	58.232	29.630	7.53	0.00	31.83	2.83
187	188	9.832445	GAAGGAAAGGGAATTAGTTTTCTTTTT	57.168	29.630	3.04	0.00	30.57	1.94
188	189	8.429641	GGAAGGAAAGGGAATTAGTTTTCTTTT	58.570	33.333	3.04	2.31	30.57	2.27
189	190	7.255836	CGGAAGGAAAGGGAATTAGTTTTCTTT	60.256	37.037	5.60	5.60	30.57	2.52
190	191	6.208797	CGGAAGGAAAGGGAATTAGTTTTCTT	59.791	38.462	1.53	1.53	32.67	2.52
191	192	5.710567	CGGAAGGAAAGGGAATTAGTTTTCT	59.289	40.000	7.53	0.00	31.83	2.52
194	195	3.762288	GCGGAAGGAAAGGGAATTAGTTT	59.238	43.478	0.00	0.00	0.00	2.66
195	196	3.353557	GCGGAAGGAAAGGGAATTAGTT	58.646	45.455	0.00	0.00	0.00	2.24
196	197	2.356844	GGCGGAAGGAAAGGGAATTAGT	60.357	50.000	0.00	0.00	0.00	2.24
198	199	1.636519	TGGCGGAAGGAAAGGGAATTA	59.363	47.619	0.00	0.00	0.00	1.40
199	200	0.407918	TGGCGGAAGGAAAGGGAATT	59.592	50.000	0.00	0.00	0.00	2.17
200	201	0.323451	GTGGCGGAAGGAAAGGGAAT	60.323	55.000	0.00	0.00	0.00	3.01
201	202	1.074248	GTGGCGGAAGGAAAGGGAA	59.926	57.895	0.00	0.00	0.00	3.97
202	203	2.754375	GTGGCGGAAGGAAAGGGA	59.246	61.111	0.00	0.00	0.00	4.20
203	204	2.361230	GGTGGCGGAAGGAAAGGG	60.361	66.667	0.00	0.00	0.00	3.95
204	205	1.377333	GAGGTGGCGGAAGGAAAGG	60.377	63.158	0.00	0.00	0.00	3.11
206	207	1.072505	GTGAGGTGGCGGAAGGAAA	59.927	57.895	0.00	0.00	0.00	3.13
207	208	2.747686	GTGAGGTGGCGGAAGGAA	59.252	61.111	0.00	0.00	0.00	3.36
208	209	3.319198	GGTGAGGTGGCGGAAGGA	61.319	66.667	0.00	0.00	0.00	3.36
210	211	2.907897	GATCGGTGAGGTGGCGGAAG	62.908	65.000	0.00	0.00	0.00	3.46
211	212	3.000819	ATCGGTGAGGTGGCGGAA	61.001	61.111	0.00	0.00	0.00	4.30
212	213	3.458163	GATCGGTGAGGTGGCGGA	61.458	66.667	0.00	0.00	0.00	5.54
213	214	4.530857	GGATCGGTGAGGTGGCGG	62.531	72.222	0.00	0.00	0.00	6.13
214	215	4.873129	CGGATCGGTGAGGTGGCG	62.873	72.222	0.00	0.00	0.00	5.69
216	217	3.461773	AGCGGATCGGTGAGGTGG	61.462	66.667	1.93	0.00	35.85	4.61
223	224	1.135083	CAAGTTAGACAGCGGATCGGT	60.135	52.381	1.93	0.00	38.40	4.69
225	226	1.920574	CACAAGTTAGACAGCGGATCG	59.079	52.381	0.00	0.00	0.00	3.69
226	227	1.661112	GCACAAGTTAGACAGCGGATC	59.339	52.381	0.00	0.00	0.00	3.36
227	228	1.676014	GGCACAAGTTAGACAGCGGAT	60.676	52.381	0.00	0.00	0.00	4.18
228	229	0.320421	GGCACAAGTTAGACAGCGGA	60.320	55.000	0.00	0.00	0.00	5.54
229	230	0.602638	TGGCACAAGTTAGACAGCGG	60.603	55.000	0.00	0.00	31.92	5.52
230	231	0.512952	GTGGCACAAGTTAGACAGCG	59.487	55.000	13.86	0.00	44.16	5.18
231	232	0.875059	GGTGGCACAAGTTAGACAGC	59.125	55.000	20.82	0.00	44.16	4.40
232	233	2.224281	TGAGGTGGCACAAGTTAGACAG	60.224	50.000	20.82	0.00	44.16	3.51
233	234	1.765904	TGAGGTGGCACAAGTTAGACA	59.234	47.619	20.82	4.36	44.16	3.41
235	236	1.071699	GGTGAGGTGGCACAAGTTAGA	59.928	52.381	20.82	0.00	44.16	2.10
237	238	0.250124	CGGTGAGGTGGCACAAGTTA	60.250	55.000	20.82	0.00	44.16	2.24
238	239	1.525995	CGGTGAGGTGGCACAAGTT	60.526	57.895	20.82	1.14	44.16	2.66
239	240	1.768684	ATCGGTGAGGTGGCACAAGT	61.769	55.000	20.82	2.68	44.16	3.16
241	242	1.003839	GATCGGTGAGGTGGCACAA	60.004	57.895	20.82	0.93	44.16	3.33
242	243	2.662596	GATCGGTGAGGTGGCACA	59.337	61.111	20.82	0.00	40.52	4.57
243	244	2.125106	GGATCGGTGAGGTGGCAC	60.125	66.667	9.70	9.70	38.05	5.01
244	245	3.770040	CGGATCGGTGAGGTGGCA	61.770	66.667	0.00	0.00	0.00	4.92
246	247	4.873129	CGCGGATCGGTGAGGTGG	62.873	72.222	8.03	0.00	33.78	4.61
255	256	0.179145	ACAAGTTAGACCGCGGATCG	60.179	55.000	35.90	13.29	38.08	3.69
256	257	1.278238	CACAAGTTAGACCGCGGATC	58.722	55.000	35.90	24.55	0.00	3.36
257	258	0.739813	GCACAAGTTAGACCGCGGAT	60.740	55.000	35.90	22.36	0.00	4.18
258	259	1.373748	GCACAAGTTAGACCGCGGA	60.374	57.895	35.90	6.51	0.00	5.54
259	260	2.388232	GGCACAAGTTAGACCGCGG	61.388	63.158	26.86	26.86	0.00	6.46
261	262	1.574702	GGTGGCACAAGTTAGACCGC	61.575	60.000	20.82	0.00	44.16	5.68
262	263	0.034896	AGGTGGCACAAGTTAGACCG	59.965	55.000	20.82	0.00	44.16	4.79
263	264	1.071699	TGAGGTGGCACAAGTTAGACC	59.928	52.381	20.82	0.00	44.16	3.85
265	266	3.072330	TCAATGAGGTGGCACAAGTTAGA	59.928	43.478	20.82	7.40	44.16	2.10
267	268	3.500448	TCAATGAGGTGGCACAAGTTA	57.500	42.857	20.82	0.19	44.16	2.24
268	269	2.363306	TCAATGAGGTGGCACAAGTT	57.637	45.000	20.82	5.51	44.16	2.66
269	270	2.440409	GATCAATGAGGTGGCACAAGT	58.560	47.619	20.82	2.68	44.16	3.16
271	272	1.838112	GGATCAATGAGGTGGCACAA	58.162	50.000	20.82	4.57	44.16	3.33
272	273	0.392863	CGGATCAATGAGGTGGCACA	60.393	55.000	20.82	0.00	0.00	4.57
273	274	1.718757	GCGGATCAATGAGGTGGCAC	61.719	60.000	9.70	9.70	0.00	5.01
275	276	2.537560	CGCGGATCAATGAGGTGGC	61.538	63.158	0.00	0.00	0.00	5.01
276	277	1.889105	CCGCGGATCAATGAGGTGG	60.889	63.158	24.07	0.00	0.00	4.61
278	279	2.203070	GCCGCGGATCAATGAGGT	60.203	61.111	33.48	0.00	0.00	3.85
279	280	2.203056	TGCCGCGGATCAATGAGG	60.203	61.111	33.48	0.00	0.00	3.86
281	282	1.153188	ATGTGCCGCGGATCAATGA	60.153	52.632	33.48	6.09	0.00	2.57
282	283	1.280746	GATGTGCCGCGGATCAATG	59.719	57.895	33.48	0.00	0.00	2.82
283	284	1.893808	GGATGTGCCGCGGATCAAT	60.894	57.895	33.48	16.25	0.00	2.57
284	285	2.513666	GGATGTGCCGCGGATCAA	60.514	61.111	33.48	11.43	0.00	2.57
285	286	2.535485	AAAGGATGTGCCGCGGATCA	62.535	55.000	33.48	26.06	43.43	2.92
286	287	1.776034	GAAAGGATGTGCCGCGGATC	61.776	60.000	33.48	22.76	43.43	3.36
287	288	1.819632	GAAAGGATGTGCCGCGGAT	60.820	57.895	33.48	14.61	43.43	4.18
288	289	2.435938	GAAAGGATGTGCCGCGGA	60.436	61.111	33.48	8.89	43.43	5.54
289	290	1.586154	AAAGAAAGGATGTGCCGCGG	61.586	55.000	24.05	24.05	43.43	6.46
291	292	1.701704	CAAAAGAAAGGATGTGCCGC	58.298	50.000	0.00	0.00	43.43	6.53
293	294	2.084610	GGCAAAAGAAAGGATGTGCC	57.915	50.000	0.00	0.00	44.23	5.01
296	297	2.634453	CCAAGGGCAAAAGAAAGGATGT	59.366	45.455	0.00	0.00	0.00	3.06
297	298	2.899256	TCCAAGGGCAAAAGAAAGGATG	59.101	45.455	0.00	0.00	0.00	3.51
298	299	2.899900	GTCCAAGGGCAAAAGAAAGGAT	59.100	45.455	0.00	0.00	0.00	3.24
299	300	2.316108	GTCCAAGGGCAAAAGAAAGGA	58.684	47.619	0.00	0.00	0.00	3.36
300	301	1.344438	GGTCCAAGGGCAAAAGAAAGG	59.656	52.381	0.00	0.00	0.00	3.11
302	303	2.166907	TGGTCCAAGGGCAAAAGAAA	57.833	45.000	0.00	0.00	0.00	2.52
303	304	1.969923	CATGGTCCAAGGGCAAAAGAA	59.030	47.619	0.00	0.00	0.00	2.52
304	305	1.631405	CATGGTCCAAGGGCAAAAGA	58.369	50.000	0.00	0.00	0.00	2.52
306	307	1.479368	GGCATGGTCCAAGGGCAAAA	61.479	55.000	13.59	0.00	0.00	2.44
307	308	1.912763	GGCATGGTCCAAGGGCAAA	60.913	57.895	13.59	0.00	0.00	3.68
308	309	2.283821	GGCATGGTCCAAGGGCAA	60.284	61.111	13.59	0.00	0.00	4.52
309	310	4.380945	GGGCATGGTCCAAGGGCA	62.381	66.667	18.36	0.00	0.00	5.36
311	312	2.276740	GAGGGCATGGTCCAAGGG	59.723	66.667	0.00	0.00	0.00	3.95
312	313	2.276309	GAGGAGGGCATGGTCCAAGG	62.276	65.000	0.00	0.00	35.02	3.61
313	314	1.225704	GAGGAGGGCATGGTCCAAG	59.774	63.158	0.00	0.00	35.02	3.61
314	315	0.920763	ATGAGGAGGGCATGGTCCAA	60.921	55.000	0.00	0.00	35.02	3.53
315	316	0.920763	AATGAGGAGGGCATGGTCCA	60.921	55.000	0.00	0.00	35.02	4.02
316	317	0.179006	GAATGAGGAGGGCATGGTCC	60.179	60.000	0.00	0.00	0.00	4.46
317	318	0.842635	AGAATGAGGAGGGCATGGTC	59.157	55.000	0.00	0.00	0.00	4.02
318	319	2.173569	GTTAGAATGAGGAGGGCATGGT	59.826	50.000	0.00	0.00	0.00	3.55
319	320	2.441001	AGTTAGAATGAGGAGGGCATGG	59.559	50.000	0.00	0.00	0.00	3.66
321	322	2.708325	GGAGTTAGAATGAGGAGGGCAT	59.292	50.000	0.00	0.00	0.00	4.40
322	323	2.119495	GGAGTTAGAATGAGGAGGGCA	58.881	52.381	0.00	0.00	0.00	5.36
324	325	2.764269	TGGGAGTTAGAATGAGGAGGG	58.236	52.381	0.00	0.00	0.00	4.30
325	326	4.230455	AGATGGGAGTTAGAATGAGGAGG	58.770	47.826	0.00	0.00	0.00	4.30
327	328	5.149584	AGAGATGGGAGTTAGAATGAGGA	57.850	43.478	0.00	0.00	0.00	3.71
328	329	8.837099	ATATAGAGATGGGAGTTAGAATGAGG	57.163	38.462	0.00	0.00	0.00	3.86
341	342	9.073475	GCTGGTTCTAGTATATATAGAGATGGG	57.927	40.741	5.51	0.91	31.17	4.00
347	348	9.990868	TGGATTGCTGGTTCTAGTATATATAGA	57.009	33.333	0.00	0.00	0.00	1.98
350	351	8.709308	GGATGGATTGCTGGTTCTAGTATATAT	58.291	37.037	0.00	0.00	0.00	0.86
351	352	7.147897	CGGATGGATTGCTGGTTCTAGTATATA	60.148	40.741	0.00	0.00	0.00	0.86
352	353	6.351371	CGGATGGATTGCTGGTTCTAGTATAT	60.351	42.308	0.00	0.00	0.00	0.86
353	354	5.047306	CGGATGGATTGCTGGTTCTAGTATA	60.047	44.000	0.00	0.00	0.00	1.47
354	355	4.262635	CGGATGGATTGCTGGTTCTAGTAT	60.263	45.833	0.00	0.00	0.00	2.12
355	356	3.069586	CGGATGGATTGCTGGTTCTAGTA	59.930	47.826	0.00	0.00	0.00	1.82
356	357	2.158900	CGGATGGATTGCTGGTTCTAGT	60.159	50.000	0.00	0.00	0.00	2.57
357	358	2.487934	CGGATGGATTGCTGGTTCTAG	58.512	52.381	0.00	0.00	0.00	2.43
358	359	1.475034	GCGGATGGATTGCTGGTTCTA	60.475	52.381	0.00	0.00	0.00	2.10
359	360	0.749454	GCGGATGGATTGCTGGTTCT	60.749	55.000	0.00	0.00	0.00	3.01
361	362	2.114670	CGCGGATGGATTGCTGGTT	61.115	57.895	0.00	0.00	0.00	3.67
362	363	2.514592	CGCGGATGGATTGCTGGT	60.515	61.111	0.00	0.00	0.00	4.00
363	364	2.514592	ACGCGGATGGATTGCTGG	60.515	61.111	12.47	0.00	0.00	4.85
390	391	4.389576	CAAGCCCAAGTCGCACGC	62.390	66.667	0.00	0.00	0.00	5.34
391	392	3.726517	CCAAGCCCAAGTCGCACG	61.727	66.667	0.00	0.00	0.00	5.34
393	394	4.659172	CCCCAAGCCCAAGTCGCA	62.659	66.667	0.00	0.00	0.00	5.10
395	396	3.868200	AAGCCCCAAGCCCAAGTCG	62.868	63.158	0.00	0.00	45.47	4.18
396	397	2.118294	AAGCCCCAAGCCCAAGTC	59.882	61.111	0.00	0.00	45.47	3.01
397	398	2.203684	CAAGCCCCAAGCCCAAGT	60.204	61.111	0.00	0.00	45.47	3.16
399	400	3.843800	ACCAAGCCCCAAGCCCAA	61.844	61.111	0.00	0.00	45.47	4.12
400	401	4.619320	CACCAAGCCCCAAGCCCA	62.619	66.667	0.00	0.00	45.47	5.36
402	403	2.991540	GTCACCAAGCCCCAAGCC	60.992	66.667	0.00	0.00	45.47	4.35
405	406	3.494254	ACCGTCACCAAGCCCCAA	61.494	61.111	0.00	0.00	0.00	4.12
406	407	4.263572	CACCGTCACCAAGCCCCA	62.264	66.667	0.00	0.00	0.00	4.96
407	408	3.901797	CTCACCGTCACCAAGCCCC	62.902	68.421	0.00	0.00	0.00	5.80
409	410	2.358737	CCTCACCGTCACCAAGCC	60.359	66.667	0.00	0.00	0.00	4.35
411	412	1.301716	CACCCTCACCGTCACCAAG	60.302	63.158	0.00	0.00	0.00	3.61
412	413	1.754380	CTCACCCTCACCGTCACCAA	61.754	60.000	0.00	0.00	0.00	3.67
413	414	2.123208	TCACCCTCACCGTCACCA	60.123	61.111	0.00	0.00	0.00	4.17
414	415	2.657237	CTCACCCTCACCGTCACC	59.343	66.667	0.00	0.00	0.00	4.02
415	416	2.657237	CCTCACCCTCACCGTCAC	59.343	66.667	0.00	0.00	0.00	3.67
416	417	2.603473	CCCTCACCCTCACCGTCA	60.603	66.667	0.00	0.00	0.00	4.35
418	419	2.923035	CACCCTCACCCTCACCGT	60.923	66.667	0.00	0.00	0.00	4.83
419	420	2.603473	TCACCCTCACCCTCACCG	60.603	66.667	0.00	0.00	0.00	4.94
421	422	2.294078	CCCTCACCCTCACCCTCAC	61.294	68.421	0.00	0.00	0.00	3.51
422	423	1.448814	TACCCTCACCCTCACCCTCA	61.449	60.000	0.00	0.00	0.00	3.86
423	424	0.976590	GTACCCTCACCCTCACCCTC	60.977	65.000	0.00	0.00	0.00	4.30
424	425	1.080538	GTACCCTCACCCTCACCCT	59.919	63.158	0.00	0.00	0.00	4.34
427	428	3.015312	GCCGTACCCTCACCCTCAC	62.015	68.421	0.00	0.00	0.00	3.51
428	429	2.682494	GCCGTACCCTCACCCTCA	60.682	66.667	0.00	0.00	0.00	3.86
430	431	4.371417	TCGCCGTACCCTCACCCT	62.371	66.667	0.00	0.00	0.00	4.34
431	432	4.139234	GTCGCCGTACCCTCACCC	62.139	72.222	0.00	0.00	0.00	4.61
432	433	4.487412	CGTCGCCGTACCCTCACC	62.487	72.222	0.00	0.00	0.00	4.02
433	434	4.487412	CCGTCGCCGTACCCTCAC	62.487	72.222	0.00	0.00	0.00	3.51
446	447	4.671549	TGTCGTGTCGTCGCCGTC	62.672	66.667	0.00	0.00	35.01	4.79
447	448	4.678269	CTGTCGTGTCGTCGCCGT	62.678	66.667	0.00	0.00	35.01	5.68
449	450	4.994201	TGCTGTCGTGTCGTCGCC	62.994	66.667	0.00	0.00	0.00	5.54
453	454	0.387367	GTGATCTGCTGTCGTGTCGT	60.387	55.000	0.00	0.00	0.00	4.34
454	455	1.398762	CGTGATCTGCTGTCGTGTCG	61.399	60.000	0.00	0.00	0.00	4.35
456	457	1.734477	GCGTGATCTGCTGTCGTGT	60.734	57.895	0.00	0.00	0.00	4.49
457	458	2.447887	GGCGTGATCTGCTGTCGTG	61.448	63.158	9.79	0.00	0.00	4.35
458	459	2.125912	GGCGTGATCTGCTGTCGT	60.126	61.111	9.79	0.00	0.00	4.34
465	466	1.154205	GGAATGGACGGCGTGATCTG	61.154	60.000	21.19	0.00	0.00	2.90
466	467	1.144057	GGAATGGACGGCGTGATCT	59.856	57.895	21.19	0.00	0.00	2.75
468	469	2.189521	GGGAATGGACGGCGTGAT	59.810	61.111	21.19	6.25	0.00	3.06
471	472	2.798148	GAACTGGGAATGGACGGCGT	62.798	60.000	14.65	14.65	0.00	5.68
473	474	2.106683	CGAACTGGGAATGGACGGC	61.107	63.158	0.00	0.00	0.00	5.68
474	475	0.460284	CTCGAACTGGGAATGGACGG	60.460	60.000	0.00	0.00	0.00	4.79
475	476	1.084370	GCTCGAACTGGGAATGGACG	61.084	60.000	0.00	0.00	0.00	4.79
482	483	1.633774	AGAAGAAGCTCGAACTGGGA	58.366	50.000	0.00	0.00	0.00	4.37
483	484	2.342179	GAAGAAGAAGCTCGAACTGGG	58.658	52.381	0.00	0.00	0.00	4.45
484	485	1.989165	CGAAGAAGAAGCTCGAACTGG	59.011	52.381	0.00	0.00	0.00	4.00
486	487	3.372660	AACGAAGAAGAAGCTCGAACT	57.627	42.857	0.00	0.00	0.00	3.01
487	488	3.245519	ACAAACGAAGAAGAAGCTCGAAC	59.754	43.478	0.00	0.00	0.00	3.95
488	489	3.454375	ACAAACGAAGAAGAAGCTCGAA	58.546	40.909	0.00	0.00	0.00	3.71
489	490	3.093717	ACAAACGAAGAAGAAGCTCGA	57.906	42.857	0.00	0.00	0.00	4.04
491	492	3.058846	GGGAACAAACGAAGAAGAAGCTC	60.059	47.826	0.00	0.00	0.00	4.09
492	493	2.879026	GGGAACAAACGAAGAAGAAGCT	59.121	45.455	0.00	0.00	0.00	3.74
493	494	2.879026	AGGGAACAAACGAAGAAGAAGC	59.121	45.455	0.00	0.00	0.00	3.86
494	495	4.381411	AGAGGGAACAAACGAAGAAGAAG	58.619	43.478	0.00	0.00	0.00	2.85
495	496	4.377897	GAGAGGGAACAAACGAAGAAGAA	58.622	43.478	0.00	0.00	0.00	2.52
496	497	3.552273	CGAGAGGGAACAAACGAAGAAGA	60.552	47.826	0.00	0.00	0.00	2.87
497	498	2.731976	CGAGAGGGAACAAACGAAGAAG	59.268	50.000	0.00	0.00	0.00	2.85
501	502	1.000506	CCTCGAGAGGGAACAAACGAA	59.999	52.381	15.71	0.00	44.87	3.85
502	503	0.601558	CCTCGAGAGGGAACAAACGA	59.398	55.000	15.71	0.00	44.87	3.85
503	504	3.123674	CCTCGAGAGGGAACAAACG	57.876	57.895	15.71	0.00	44.87	3.60
513	514	4.336993	AGCTACTTGTTATCACCTCGAGAG	59.663	45.833	15.71	6.69	0.00	3.20
514	515	4.096532	CAGCTACTTGTTATCACCTCGAGA	59.903	45.833	15.71	0.00	0.00	4.04
516	517	4.014406	TCAGCTACTTGTTATCACCTCGA	58.986	43.478	0.00	0.00	0.00	4.04
519	520	4.624125	GCCTTCAGCTACTTGTTATCACCT	60.624	45.833	0.00	0.00	38.99	4.00
520	521	3.623510	GCCTTCAGCTACTTGTTATCACC	59.376	47.826	0.00	0.00	38.99	4.02
522	523	3.521560	CGCCTTCAGCTACTTGTTATCA	58.478	45.455	0.00	0.00	40.39	2.15
523	524	2.866762	CCGCCTTCAGCTACTTGTTATC	59.133	50.000	0.00	0.00	40.39	1.75
524	525	2.420129	CCCGCCTTCAGCTACTTGTTAT	60.420	50.000	0.00	0.00	40.39	1.89
526	527	0.321653	CCCGCCTTCAGCTACTTGTT	60.322	55.000	0.00	0.00	40.39	2.83
527	528	1.296715	CCCGCCTTCAGCTACTTGT	59.703	57.895	0.00	0.00	40.39	3.16
528	529	2.109126	GCCCGCCTTCAGCTACTTG	61.109	63.158	0.00	0.00	40.39	3.16
529	530	2.269241	GCCCGCCTTCAGCTACTT	59.731	61.111	0.00	0.00	40.39	2.24
530	531	3.003173	TGCCCGCCTTCAGCTACT	61.003	61.111	0.00	0.00	40.39	2.57
549	550	2.100631	AATTCGTCGCTTCCCGCTG	61.101	57.895	0.00	0.00	36.73	5.18
550	551	2.100631	CAATTCGTCGCTTCCCGCT	61.101	57.895	0.00	0.00	36.73	5.52
552	553	1.004927	GAATCAATTCGTCGCTTCCCG	60.005	52.381	0.00	0.00	38.61	5.14
553	554	1.330829	GGAATCAATTCGTCGCTTCCC	59.669	52.381	0.00	0.00	37.67	3.97
554	555	2.006888	TGGAATCAATTCGTCGCTTCC	58.993	47.619	0.00	0.00	37.67	3.46
556	557	2.416547	CAGTGGAATCAATTCGTCGCTT	59.583	45.455	0.00	0.00	37.67	4.68
557	558	2.002586	CAGTGGAATCAATTCGTCGCT	58.997	47.619	0.00	0.00	37.67	4.93
558	559	1.732259	ACAGTGGAATCAATTCGTCGC	59.268	47.619	0.00	0.00	37.67	5.19
559	560	2.993220	TCACAGTGGAATCAATTCGTCG	59.007	45.455	0.00	0.00	37.67	5.12
561	562	4.008074	ACTCACAGTGGAATCAATTCGT	57.992	40.909	0.00	0.00	37.67	3.85
562	563	5.362556	AAACTCACAGTGGAATCAATTCG	57.637	39.130	0.00	0.00	37.67	3.34
563	564	6.738114	TGAAAACTCACAGTGGAATCAATTC	58.262	36.000	0.00	0.00	36.08	2.17
564	565	6.713762	TGAAAACTCACAGTGGAATCAATT	57.286	33.333	0.00	0.00	0.00	2.32
565	566	6.713762	TTGAAAACTCACAGTGGAATCAAT	57.286	33.333	0.00	0.00	0.00	2.57
566	567	6.522625	TTTGAAAACTCACAGTGGAATCAA	57.477	33.333	0.00	2.92	0.00	2.57
568	569	6.738114	TGATTTGAAAACTCACAGTGGAATC	58.262	36.000	0.00	0.00	0.00	2.52
569	570	6.239120	CCTGATTTGAAAACTCACAGTGGAAT	60.239	38.462	0.00	0.00	0.00	3.01
573	574	4.202040	TGCCTGATTTGAAAACTCACAGTG	60.202	41.667	0.00	0.00	0.00	3.66
574	575	3.953612	TGCCTGATTTGAAAACTCACAGT	59.046	39.130	0.00	0.00	0.00	3.55
575	576	4.572985	TGCCTGATTTGAAAACTCACAG	57.427	40.909	0.00	0.00	0.00	3.66
576	577	4.402155	ACTTGCCTGATTTGAAAACTCACA	59.598	37.500	0.00	0.00	0.00	3.58
577	578	4.936891	ACTTGCCTGATTTGAAAACTCAC	58.063	39.130	0.00	0.00	0.00	3.51
578	579	4.037923	GGACTTGCCTGATTTGAAAACTCA	59.962	41.667	0.00	0.00	0.00	3.41
579	580	4.037923	TGGACTTGCCTGATTTGAAAACTC	59.962	41.667	0.00	0.00	37.63	3.01
580	581	3.960102	TGGACTTGCCTGATTTGAAAACT	59.040	39.130	0.00	0.00	37.63	2.66
582	583	3.243839	GCTGGACTTGCCTGATTTGAAAA	60.244	43.478	0.00	0.00	37.79	2.29
583	584	2.297033	GCTGGACTTGCCTGATTTGAAA	59.703	45.455	0.00	0.00	37.79	2.69
584	585	1.888512	GCTGGACTTGCCTGATTTGAA	59.111	47.619	0.00	0.00	37.79	2.69
585	586	1.074405	AGCTGGACTTGCCTGATTTGA	59.926	47.619	0.00	0.00	37.79	2.69
586	587	1.471684	GAGCTGGACTTGCCTGATTTG	59.528	52.381	0.00	0.00	37.79	2.32
587	588	1.615384	GGAGCTGGACTTGCCTGATTT	60.615	52.381	0.00	0.00	37.79	2.17
588	589	0.034670	GGAGCTGGACTTGCCTGATT	60.035	55.000	0.00	0.00	37.79	2.57
589	590	1.203441	TGGAGCTGGACTTGCCTGAT	61.203	55.000	0.00	0.00	37.79	2.90
590	591	1.203441	ATGGAGCTGGACTTGCCTGA	61.203	55.000	0.00	0.00	37.79	3.86
591	592	0.543277	TATGGAGCTGGACTTGCCTG	59.457	55.000	0.00	0.00	37.63	4.85
594	595	0.253044	TGGTATGGAGCTGGACTTGC	59.747	55.000	0.00	0.00	0.00	4.01
595	596	2.026822	AGTTGGTATGGAGCTGGACTTG	60.027	50.000	0.00	0.00	0.00	3.16
596	597	2.026822	CAGTTGGTATGGAGCTGGACTT	60.027	50.000	0.00	0.00	0.00	3.01
598	599	2.014068	GCAGTTGGTATGGAGCTGGAC	61.014	57.143	0.00	0.00	0.00	4.02
599	600	0.253044	GCAGTTGGTATGGAGCTGGA	59.747	55.000	0.00	0.00	0.00	3.86
600	601	0.254178	AGCAGTTGGTATGGAGCTGG	59.746	55.000	0.00	0.00	0.00	4.85
602	603	0.393537	GCAGCAGTTGGTATGGAGCT	60.394	55.000	0.00	0.00	0.00	4.09
603	604	1.709147	CGCAGCAGTTGGTATGGAGC	61.709	60.000	0.00	0.00	0.00	4.70
604	605	0.391661	ACGCAGCAGTTGGTATGGAG	60.392	55.000	0.00	0.00	0.00	3.86
605	606	0.899019	TACGCAGCAGTTGGTATGGA	59.101	50.000	0.00	0.00	0.00	3.41
607	608	1.134818	TCCTACGCAGCAGTTGGTATG	60.135	52.381	14.05	0.00	38.04	2.39
608	609	1.191535	TCCTACGCAGCAGTTGGTAT	58.808	50.000	14.05	0.00	38.04	2.73
609	610	1.136305	GATCCTACGCAGCAGTTGGTA	59.864	52.381	14.05	0.00	38.04	3.25
610	611	0.108138	GATCCTACGCAGCAGTTGGT	60.108	55.000	14.05	5.69	38.04	3.67
612	613	1.135915	AGAGATCCTACGCAGCAGTTG	59.864	52.381	0.00	0.00	0.00	3.16
613	614	1.407258	GAGAGATCCTACGCAGCAGTT	59.593	52.381	0.00	0.00	0.00	3.16
614	615	1.028905	GAGAGATCCTACGCAGCAGT	58.971	55.000	0.00	0.00	0.00	4.40
616	617	1.135139	GTTGAGAGATCCTACGCAGCA	59.865	52.381	0.00	0.00	0.00	4.41
617	618	1.407258	AGTTGAGAGATCCTACGCAGC	59.593	52.381	0.00	0.00	0.00	5.25
618	619	2.034053	GGAGTTGAGAGATCCTACGCAG	59.966	54.545	0.00	0.00	0.00	5.18
619	620	2.025155	GGAGTTGAGAGATCCTACGCA	58.975	52.381	0.00	0.00	0.00	5.24
622	623	3.634910	GAGGTGGAGTTGAGAGATCCTAC	59.365	52.174	0.00	0.00	34.04	3.18
623	624	3.373220	GGAGGTGGAGTTGAGAGATCCTA	60.373	52.174	0.00	0.00	34.04	2.94
624	625	2.625617	GGAGGTGGAGTTGAGAGATCCT	60.626	54.545	0.00	0.00	34.04	3.24
625	626	1.760029	GGAGGTGGAGTTGAGAGATCC	59.240	57.143	0.00	0.00	0.00	3.36
627	628	2.630889	TGGAGGTGGAGTTGAGAGAT	57.369	50.000	0.00	0.00	0.00	2.75
628	629	2.630889	ATGGAGGTGGAGTTGAGAGA	57.369	50.000	0.00	0.00	0.00	3.10
630	631	2.040278	CCAAATGGAGGTGGAGTTGAGA	59.960	50.000	0.00	0.00	37.03	3.27
631	632	2.440409	CCAAATGGAGGTGGAGTTGAG	58.560	52.381	0.00	0.00	37.03	3.02
632	633	1.547675	GCCAAATGGAGGTGGAGTTGA	60.548	52.381	2.98	0.00	37.03	3.18
633	634	0.890683	GCCAAATGGAGGTGGAGTTG	59.109	55.000	2.98	0.00	37.03	3.16
634	635	0.779997	AGCCAAATGGAGGTGGAGTT	59.220	50.000	2.98	0.00	37.03	3.01
635	636	0.329596	GAGCCAAATGGAGGTGGAGT	59.670	55.000	2.98	0.00	37.03	3.85
636	637	0.394899	GGAGCCAAATGGAGGTGGAG	60.395	60.000	2.98	0.00	37.03	3.86
640	641	0.846427	TGAGGGAGCCAAATGGAGGT	60.846	55.000	2.98	0.00	37.39	3.85
641	642	0.332632	TTGAGGGAGCCAAATGGAGG	59.667	55.000	2.98	0.00	37.39	4.30
646	647	1.428912	TGGAGTTTGAGGGAGCCAAAT	59.571	47.619	0.00	0.00	36.14	2.32
647	648	0.850100	TGGAGTTTGAGGGAGCCAAA	59.150	50.000	0.00	0.00	0.00	3.28
648	649	0.401738	CTGGAGTTTGAGGGAGCCAA	59.598	55.000	0.00	0.00	0.00	4.52
649	650	2.069776	CTGGAGTTTGAGGGAGCCA	58.930	57.895	0.00	0.00	0.00	4.75
651	652	0.392327	GAGCTGGAGTTTGAGGGAGC	60.392	60.000	0.00	0.00	0.00	4.70
652	653	0.251634	GGAGCTGGAGTTTGAGGGAG	59.748	60.000	0.00	0.00	0.00	4.30
653	654	0.473694	TGGAGCTGGAGTTTGAGGGA	60.474	55.000	0.00	0.00	0.00	4.20
655	656	1.747709	CATGGAGCTGGAGTTTGAGG	58.252	55.000	0.00	0.00	0.00	3.86
658	659	0.609957	TGGCATGGAGCTGGAGTTTG	60.610	55.000	0.00	0.00	44.79	2.93
659	660	0.112995	TTGGCATGGAGCTGGAGTTT	59.887	50.000	0.00	0.00	44.79	2.66
692	693	5.184287	GGTAGGGCTTGCATAAGTTGTTTTA	59.816	40.000	0.00	0.00	36.27	1.52
694	695	3.509967	GGTAGGGCTTGCATAAGTTGTTT	59.490	43.478	0.00	0.00	36.27	2.83
698	699	2.017113	GCGGTAGGGCTTGCATAAGTT	61.017	52.381	0.00	0.00	36.27	2.66
699	700	0.463833	GCGGTAGGGCTTGCATAAGT	60.464	55.000	0.00	0.00	36.27	2.24
782	783	4.764823	GGGATCACTTGTCCAATACAACAA	59.235	41.667	0.00	0.00	43.22	2.83
783	784	4.202514	TGGGATCACTTGTCCAATACAACA	60.203	41.667	0.00	0.00	43.22	3.33
784	785	4.331968	TGGGATCACTTGTCCAATACAAC	58.668	43.478	0.00	0.00	43.22	3.32
810	811	0.770499	TCATTGTCCAGCCAACCTCA	59.230	50.000	0.00	0.00	0.00	3.86
811	812	1.168714	GTCATTGTCCAGCCAACCTC	58.831	55.000	0.00	0.00	0.00	3.85
812	813	0.478072	TGTCATTGTCCAGCCAACCT	59.522	50.000	0.00	0.00	0.00	3.50
813	814	1.000274	GTTGTCATTGTCCAGCCAACC	60.000	52.381	0.00	0.00	0.00	3.77
814	815	1.680735	TGTTGTCATTGTCCAGCCAAC	59.319	47.619	0.00	0.00	34.32	3.77
815	816	2.064434	TGTTGTCATTGTCCAGCCAA	57.936	45.000	0.00	0.00	0.00	4.52
816	817	2.064434	TTGTTGTCATTGTCCAGCCA	57.936	45.000	0.00	0.00	0.00	4.75
818	819	3.648339	ACATTGTTGTCATTGTCCAGC	57.352	42.857	0.00	0.00	34.41	4.85
853	854	2.209064	CTACACGTGACCCCCAGACG	62.209	65.000	25.01	0.00	39.03	4.18
855	856	0.405198	TACTACACGTGACCCCCAGA	59.595	55.000	25.01	0.00	0.00	3.86
856	857	0.529378	GTACTACACGTGACCCCCAG	59.471	60.000	25.01	10.89	0.00	4.45
857	858	0.112995	AGTACTACACGTGACCCCCA	59.887	55.000	25.01	0.00	0.00	4.96
890	891	4.034647	CGATCCTCGACGCAATACATGC	62.035	54.545	0.00	0.00	46.92	4.06
892	893	1.607148	TCGATCCTCGACGCAATACAT	59.393	47.619	0.00	0.00	44.82	2.29
910	911	1.721664	TAGTTGGATCGCGGGAGTCG	61.722	60.000	6.13	0.00	42.76	4.18
937	938	9.905713	TTGGATTTTCTTGTAGTATATTGCTCT	57.094	29.630	0.00	0.00	0.00	4.09
973	974	1.239968	GCAGAAGCACAACCCAGGAG	61.240	60.000	0.00	0.00	41.58	3.69
974	975	1.228245	GCAGAAGCACAACCCAGGA	60.228	57.895	0.00	0.00	41.58	3.86
975	976	0.036732	TAGCAGAAGCACAACCCAGG	59.963	55.000	0.00	0.00	45.49	4.45
976	977	2.012673	GATAGCAGAAGCACAACCCAG	58.987	52.381	0.00	0.00	45.49	4.45
1417	3273	4.722279	AGGGGAGAGAACCTTATTTTCGAT	59.278	41.667	0.00	0.00	31.68	3.59
1436	3292	1.821136	GGAATTGAAGCAACAGAGGGG	59.179	52.381	0.00	0.00	0.00	4.79
1766	3774	4.546674	TCCTAGGAGAAGCATCACACATA	58.453	43.478	7.62	0.00	0.00	2.29
1909	3917	1.375396	CCGATGCGTTCTGGGTGAA	60.375	57.895	0.00	0.00	0.00	3.18
1996	4004	2.681778	CTCAGGCTCCCACTCGGT	60.682	66.667	0.00	0.00	0.00	4.69
2193	4213	1.599606	CCAGCTCGTGTACCTGCTCT	61.600	60.000	0.00	0.00	33.03	4.09
2232	4252	0.608035	CCCAAAGGAAGCGTGCCTTA	60.608	55.000	7.98	0.00	44.72	2.69
2234	4254	2.282462	CCCAAAGGAAGCGTGCCT	60.282	61.111	0.00	0.00	37.35	4.75
2293	4325	1.985116	GCTCCTCGAACCCTGGAGT	60.985	63.158	16.48	0.00	46.57	3.85
2431	4463	2.684192	ATCAACGGGTGGCCGAACAA	62.684	55.000	0.00	0.00	36.94	2.83
2446	4478	1.478105	GGAGATGGGCAGCATGATCAA	60.478	52.381	0.00	0.00	39.69	2.57
2489	4521	1.501582	GTTCCTACCCTCCATGAGCT	58.498	55.000	0.00	0.00	0.00	4.09
2502	4534	1.672854	CCTGCATCCCGACGTTCCTA	61.673	60.000	0.00	0.00	0.00	2.94
2526	4558	2.414293	CGATCCGTCACTCTCGTTTCTT	60.414	50.000	0.00	0.00	0.00	2.52
2713	4745	5.176774	GGGAAAACTAAAAACGCTTTCATGG	59.823	40.000	0.00	0.00	0.00	3.66
2757	4799	5.015733	CGCTAGATCAAATTTCACACGAAC	58.984	41.667	0.00	0.00	0.00	3.95
2789	4899	3.057969	TGGCATGAACCAGTCAACTAG	57.942	47.619	0.00	0.00	40.50	2.57
2959	5673	0.872388	CAACCACAGGTTAGTTCGCC	59.128	55.000	0.40	0.00	45.01	5.54
2965	5679	2.879103	ACCATCCAACCACAGGTTAG	57.121	50.000	0.40	0.00	45.01	2.34
2966	5680	3.911260	TCTAACCATCCAACCACAGGTTA	59.089	43.478	0.40	0.00	45.01	2.85
2970	5684	2.356125	CCCTCTAACCATCCAACCACAG	60.356	54.545	0.00	0.00	0.00	3.66
3023	5737	3.868661	TGAATGTGTATCACCGGAAATCG	59.131	43.478	9.46	0.00	32.73	3.34
3030	5744	2.093711	TCCCACTGAATGTGTATCACCG	60.094	50.000	0.00	0.00	44.81	4.94
3033	5747	3.449918	TCCTCCCACTGAATGTGTATCA	58.550	45.455	0.00	0.00	44.81	2.15
3034	5748	3.706594	TCTCCTCCCACTGAATGTGTATC	59.293	47.826	0.00	0.00	44.81	2.24
3037	5751	1.625818	GTCTCCTCCCACTGAATGTGT	59.374	52.381	0.00	0.00	44.81	3.72
3050	5764	2.614520	TCATCGACGAGAATGTCTCCTC	59.385	50.000	3.01	0.00	40.34	3.71
3073	5787	0.108756	GAGGTCAACGTAGGCACCTC	60.109	60.000	15.46	15.46	46.26	3.85
3101	5815	7.482169	AAGACCGAGCCAATATATCATCTTA	57.518	36.000	0.00	0.00	0.00	2.10
3112	5826	1.275291	TCTTCGAAAGACCGAGCCAAT	59.725	47.619	0.00	0.00	41.84	3.16
3113	5827	0.677288	TCTTCGAAAGACCGAGCCAA	59.323	50.000	0.00	0.00	41.84	4.52
3114	5828	0.895530	ATCTTCGAAAGACCGAGCCA	59.104	50.000	0.00	0.00	41.01	4.75
3121	5835	4.509600	CCCTTATGAGCATCTTCGAAAGAC	59.490	45.833	0.00	0.00	41.01	3.01
3129	5843	4.910304	ACATCCTACCCTTATGAGCATCTT	59.090	41.667	0.00	0.00	34.92	2.40
3132	5846	3.244700	GCACATCCTACCCTTATGAGCAT	60.245	47.826	0.00	0.00	37.23	3.79
3149	5863	3.980646	ATTAAACACACACACGCACAT	57.019	38.095	0.00	0.00	0.00	3.21
3162	5876	5.045505	TGCATACACTCACCCCTATTAAACA	60.046	40.000	0.00	0.00	0.00	2.83
3175	5889	6.512297	ACATTCATATACGTGCATACACTCA	58.488	36.000	0.00	0.00	45.10	3.41
3186	5900	5.933790	ACAAACGCAAACATTCATATACGT	58.066	33.333	0.00	0.00	0.00	3.57
3196	5910	4.893424	AAGACAGTACAAACGCAAACAT	57.107	36.364	0.00	0.00	0.00	2.71
3197	5911	5.798015	TTAAGACAGTACAAACGCAAACA	57.202	34.783	0.00	0.00	0.00	2.83
3310	6024	5.616424	GCGATACTGATTCATGAAGAATGCC	60.616	44.000	14.54	0.12	46.76	4.40
3333	6047	8.798859	ATATGTGTGATATTAGATTCAAGGGC	57.201	34.615	0.00	0.00	0.00	5.19
3444	6158	7.370383	AGAAGCCATGGTAATTTATTATTGCG	58.630	34.615	14.67	0.00	0.00	4.85
3514	6228	0.692419	ATGGGCAGTGGGGAGTCTAG	60.692	60.000	0.00	0.00	0.00	2.43
3515	6229	0.982852	CATGGGCAGTGGGGAGTCTA	60.983	60.000	0.00	0.00	0.00	2.59
3516	6230	2.125912	ATGGGCAGTGGGGAGTCT	59.874	61.111	0.00	0.00	0.00	3.24
3517	6231	2.273449	CATGGGCAGTGGGGAGTC	59.727	66.667	0.00	0.00	0.00	3.36
3559	6273	5.116084	AGGTTTTGAGGCTCAGCAATATA	57.884	39.130	17.91	0.00	0.00	0.86
3562	6276	2.299326	AGGTTTTGAGGCTCAGCAAT	57.701	45.000	17.91	1.52	0.00	3.56
3614	6328	4.298103	AGAAGCACATGAGAGGATTGTT	57.702	40.909	0.00	0.00	0.00	2.83
3639	6353	4.153475	GCTATAAGTTTGCGTGAAGGTCAA	59.847	41.667	0.00	0.00	0.00	3.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.