Multiple sequence alignment - TraesCS4B01G039200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G039200 chr4B 100.000 2803 0 0 1 2803 27929961 27932763 0.000000e+00 5177.0
1 TraesCS4B01G039200 chr4B 82.614 857 90 20 1441 2260 27936795 27937629 0.000000e+00 702.0
2 TraesCS4B01G039200 chr4B 86.873 259 25 4 2011 2264 27939122 27939376 5.910000e-72 281.0
3 TraesCS4B01G039200 chr4B 80.045 441 35 24 2398 2803 27939366 27939788 7.650000e-71 278.0
4 TraesCS4B01G039200 chr4B 87.624 202 21 4 2401 2598 27937627 27937828 6.040000e-57 231.0
5 TraesCS4B01G039200 chr4B 90.580 138 8 3 2590 2725 27937847 27937981 7.980000e-41 178.0
6 TraesCS4B01G039200 chr4B 100.000 28 0 0 1162 1189 263894660 263894687 5.000000e-03 52.8
7 TraesCS4B01G039200 chr4D 84.270 1424 108 45 769 2136 16153840 16155203 0.000000e+00 1282.0
8 TraesCS4B01G039200 chr4D 85.787 591 65 10 1438 2009 16199498 16200088 2.390000e-170 608.0
9 TraesCS4B01G039200 chr4D 85.638 564 36 16 5 547 16153166 16153705 4.080000e-153 551.0
10 TraesCS4B01G039200 chr4D 87.755 294 30 5 1974 2265 16196857 16197146 3.460000e-89 339.0
11 TraesCS4B01G039200 chr4D 88.235 255 25 3 2011 2264 16201740 16201990 1.630000e-77 300.0
12 TraesCS4B01G039200 chr4D 90.455 220 18 2 2045 2264 16200087 16200303 1.270000e-73 287.0
13 TraesCS4B01G039200 chr4D 82.286 350 29 16 2481 2803 16155247 16155590 3.560000e-69 272.0
14 TraesCS4B01G039200 chr4D 80.000 360 29 24 2401 2728 16200298 16200646 2.810000e-55 226.0
15 TraesCS4B01G039200 chr4D 85.294 204 15 6 2398 2598 16201980 16202171 2.200000e-46 196.0
16 TraesCS4B01G039200 chr4D 94.393 107 4 1 2627 2733 16224796 16224900 2.230000e-36 163.0
17 TraesCS4B01G039200 chr4D 90.909 66 5 1 2739 2803 16225083 16225148 1.380000e-13 87.9
18 TraesCS4B01G039200 chr4A 85.411 1083 51 29 769 1758 584347054 584345986 0.000000e+00 1026.0
19 TraesCS4B01G039200 chr4A 83.953 860 86 18 1441 2260 584339418 584338571 0.000000e+00 776.0
20 TraesCS4B01G039200 chr4A 87.671 438 42 10 1776 2208 584344294 584343864 1.500000e-137 499.0
21 TraesCS4B01G039200 chr4A 90.652 353 28 4 1873 2224 584341962 584341614 5.470000e-127 464.0
22 TraesCS4B01G039200 chr4A 80.867 392 46 23 2415 2803 584341590 584341225 5.910000e-72 281.0
23 TraesCS4B01G039200 chr4A 86.719 256 28 5 2011 2264 584281114 584280863 2.130000e-71 279.0
24 TraesCS4B01G039200 chr4A 89.862 217 15 5 2590 2803 584280659 584280447 3.560000e-69 272.0
25 TraesCS4B01G039200 chr4A 88.500 200 21 2 2401 2598 584338573 584338374 1.000000e-59 241.0
26 TraesCS4B01G039200 chr4A 85.149 202 17 6 2401 2598 584280870 584280678 7.920000e-46 195.0
27 TraesCS4B01G039200 chr4A 87.778 90 6 3 2590 2677 584338355 584338269 1.780000e-17 100.0
28 TraesCS4B01G039200 chr4A 90.909 55 4 1 731 784 584347180 584347126 3.870000e-09 73.1
29 TraesCS4B01G039200 chr3A 91.241 137 8 4 2266 2400 30398841 30398707 1.710000e-42 183.0
30 TraesCS4B01G039200 chr3A 94.845 97 3 2 2310 2404 573979369 573979465 1.740000e-32 150.0
31 TraesCS4B01G039200 chr2D 91.870 123 8 2 2266 2386 140307725 140307847 1.340000e-38 171.0
32 TraesCS4B01G039200 chr6B 87.770 139 11 3 2266 2402 469300844 469300978 1.040000e-34 158.0
33 TraesCS4B01G039200 chr6B 93.750 96 4 2 2310 2403 224871730 224871825 2.910000e-30 143.0
34 TraesCS4B01G039200 chr6B 88.525 61 5 1 577 637 583191448 583191506 3.870000e-09 73.1
35 TraesCS4B01G039200 chr6D 95.833 96 2 2 2310 2403 126435197 126435292 1.340000e-33 154.0
36 TraesCS4B01G039200 chr2B 93.204 103 4 3 2310 2410 18930701 18930600 6.260000e-32 148.0
37 TraesCS4B01G039200 chr5A 85.714 154 4 3 2269 2404 277726651 277726498 2.250000e-31 147.0
38 TraesCS4B01G039200 chr5A 90.698 43 1 3 540 580 667326473 667326432 1.000000e-03 54.7
39 TraesCS4B01G039200 chr7B 84.615 156 11 7 2266 2409 218816768 218816922 2.910000e-30 143.0
40 TraesCS4B01G039200 chr7B 80.460 87 12 2 556 638 200132611 200132696 8.380000e-06 62.1
41 TraesCS4B01G039200 chr3B 97.059 34 1 0 604 637 159536663 159536630 1.080000e-04 58.4
42 TraesCS4B01G039200 chr3B 100.000 28 0 0 557 584 704310379 704310406 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G039200 chr4B 27929961 27932763 2802 False 5177.000000 5177 100.000000 1 2803 1 chr4B.!!$F1 2802
1 TraesCS4B01G039200 chr4B 27936795 27939788 2993 False 334.000000 702 85.547200 1441 2803 5 chr4B.!!$F3 1362
2 TraesCS4B01G039200 chr4D 16153166 16155590 2424 False 701.666667 1282 84.064667 5 2803 3 chr4D.!!$F1 2798
3 TraesCS4B01G039200 chr4D 16196857 16202171 5314 False 326.000000 608 86.254333 1438 2728 6 chr4D.!!$F2 1290
4 TraesCS4B01G039200 chr4A 584338269 584347180 8911 True 432.512500 1026 86.967625 731 2803 8 chr4A.!!$R2 2072
5 TraesCS4B01G039200 chr4A 584280447 584281114 667 True 248.666667 279 87.243333 2011 2803 3 chr4A.!!$R1 792

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
47 48 0.254747 CCCCGGACTGATTTGGCTTA 59.745 55.0 0.73 0.0 0.00 3.09 F
969 1084 0.315886 CCGTTTACCCAAACCCTTGC 59.684 55.0 0.00 0.0 40.87 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1307 1527 0.471591 CCCTCCTCATCCTCCTCCTG 60.472 65.0 0.00 0.00 0.0 3.86 R
2320 9214 0.025256 CGACTAGTCGCGACTGAGTC 59.975 60.0 43.41 39.27 46.5 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.147958 TGTTTGTTGTATGCCGGAGTC 58.852 47.619 5.05 0.00 0.00 3.36
28 29 2.380084 TTGTTGTATGCCGGAGTCTC 57.620 50.000 5.05 0.00 0.00 3.36
47 48 0.254747 CCCCGGACTGATTTGGCTTA 59.745 55.000 0.73 0.00 0.00 3.09
68 69 2.106477 CTGGGAACTGCCTTCTCTTC 57.894 55.000 0.00 0.00 36.66 2.87
69 70 1.349026 CTGGGAACTGCCTTCTCTTCA 59.651 52.381 0.00 0.00 36.66 3.02
70 71 1.072331 TGGGAACTGCCTTCTCTTCAC 59.928 52.381 0.00 0.00 36.66 3.18
71 72 1.072331 GGGAACTGCCTTCTCTTCACA 59.928 52.381 0.00 0.00 36.66 3.58
72 73 2.290577 GGGAACTGCCTTCTCTTCACAT 60.291 50.000 0.00 0.00 36.66 3.21
74 75 4.384647 GGGAACTGCCTTCTCTTCACATAT 60.385 45.833 0.00 0.00 36.66 1.78
75 76 5.163301 GGGAACTGCCTTCTCTTCACATATA 60.163 44.000 0.00 0.00 36.66 0.86
77 78 7.256332 GGGAACTGCCTTCTCTTCACATATATA 60.256 40.741 0.00 0.00 36.66 0.86
78 79 7.600752 GGAACTGCCTTCTCTTCACATATATAC 59.399 40.741 0.00 0.00 0.00 1.47
79 80 7.847711 ACTGCCTTCTCTTCACATATATACT 57.152 36.000 0.00 0.00 0.00 2.12
80 81 7.891561 ACTGCCTTCTCTTCACATATATACTC 58.108 38.462 0.00 0.00 0.00 2.59
81 82 7.039363 ACTGCCTTCTCTTCACATATATACTCC 60.039 40.741 0.00 0.00 0.00 3.85
83 84 7.290014 TGCCTTCTCTTCACATATATACTCCAA 59.710 37.037 0.00 0.00 0.00 3.53
84 85 7.600752 GCCTTCTCTTCACATATATACTCCAAC 59.399 40.741 0.00 0.00 0.00 3.77
85 86 8.865090 CCTTCTCTTCACATATATACTCCAACT 58.135 37.037 0.00 0.00 0.00 3.16
113 114 2.571202 TCACTGTATGGCCATCTGACAA 59.429 45.455 24.80 3.60 0.00 3.18
126 127 6.652062 GGCCATCTGACAAGAAATTTCAAATT 59.348 34.615 19.99 3.29 35.59 1.82
136 137 9.485206 ACAAGAAATTTCAAATTCTTCAGATGG 57.515 29.630 19.99 0.00 42.41 3.51
154 155 6.372381 TCAGATGGTTCATGTGAATTGTACTG 59.628 38.462 5.44 6.27 40.36 2.74
158 159 5.703592 TGGTTCATGTGAATTGTACTGGTAC 59.296 40.000 4.15 4.15 36.33 3.34
222 233 0.899717 AATGTGAAACCGGCCTGCAT 60.900 50.000 0.00 0.00 34.36 3.96
233 244 0.387929 GGCCTGCATGAATGGTGATG 59.612 55.000 0.00 0.00 0.00 3.07
310 321 2.888863 GTCTCTCTGGACCAGCCG 59.111 66.667 17.33 10.18 40.66 5.52
342 353 3.081804 CACCCCATCTTAACACACTTCC 58.918 50.000 0.00 0.00 0.00 3.46
420 431 5.604758 TTGGTCCATTTTGAATGTGTTGA 57.395 34.783 0.00 0.00 0.00 3.18
421 432 4.942852 TGGTCCATTTTGAATGTGTTGAC 58.057 39.130 0.00 1.15 0.00 3.18
423 434 4.744631 GGTCCATTTTGAATGTGTTGACAC 59.255 41.667 7.31 7.31 46.59 3.67
425 436 6.042143 GTCCATTTTGAATGTGTTGACACTT 58.958 36.000 14.66 6.36 46.55 3.16
427 438 7.064490 GTCCATTTTGAATGTGTTGACACTTTT 59.936 33.333 14.66 8.75 46.55 2.27
432 454 5.649557 TGAATGTGTTGACACTTTTCCTTG 58.350 37.500 14.66 0.00 46.55 3.61
456 478 2.679716 GGGAGGAAGCACAGGCAT 59.320 61.111 0.00 0.00 44.61 4.40
469 491 2.426024 CACAGGCATTTTGAGCTATGCT 59.574 45.455 16.62 3.13 44.99 3.79
489 511 2.126888 CGGCGCGCAAAAGAACAT 60.127 55.556 34.42 0.00 0.00 2.71
513 535 6.454795 TGACTTTGGCACCTTCAAATATTTC 58.545 36.000 0.00 0.00 34.19 2.17
564 586 6.762333 TGTGTTTTTAAGTACCTACTCCCTC 58.238 40.000 0.00 0.00 34.99 4.30
565 587 6.556116 TGTGTTTTTAAGTACCTACTCCCTCT 59.444 38.462 0.00 0.00 34.99 3.69
566 588 6.872547 GTGTTTTTAAGTACCTACTCCCTCTG 59.127 42.308 0.00 0.00 34.99 3.35
567 589 6.556116 TGTTTTTAAGTACCTACTCCCTCTGT 59.444 38.462 0.00 0.00 34.99 3.41
568 590 6.847421 TTTTAAGTACCTACTCCCTCTGTC 57.153 41.667 0.00 0.00 34.99 3.51
569 591 5.793034 TTAAGTACCTACTCCCTCTGTCT 57.207 43.478 0.00 0.00 34.99 3.41
570 592 3.937778 AGTACCTACTCCCTCTGTCTC 57.062 52.381 0.00 0.00 0.00 3.36
571 593 3.191273 AGTACCTACTCCCTCTGTCTCA 58.809 50.000 0.00 0.00 0.00 3.27
572 594 3.789274 AGTACCTACTCCCTCTGTCTCAT 59.211 47.826 0.00 0.00 0.00 2.90
574 596 4.883021 ACCTACTCCCTCTGTCTCATAA 57.117 45.455 0.00 0.00 0.00 1.90
575 597 5.411103 ACCTACTCCCTCTGTCTCATAAT 57.589 43.478 0.00 0.00 0.00 1.28
576 598 6.532119 ACCTACTCCCTCTGTCTCATAATA 57.468 41.667 0.00 0.00 0.00 0.98
577 599 7.109901 ACCTACTCCCTCTGTCTCATAATAT 57.890 40.000 0.00 0.00 0.00 1.28
579 601 8.679725 ACCTACTCCCTCTGTCTCATAATATAA 58.320 37.037 0.00 0.00 0.00 0.98
623 645 9.013229 AGTGTCAAAAATGCTCTTATATTGTGA 57.987 29.630 0.00 0.00 0.00 3.58
624 646 9.282247 GTGTCAAAAATGCTCTTATATTGTGAG 57.718 33.333 0.00 0.00 0.00 3.51
625 647 9.230122 TGTCAAAAATGCTCTTATATTGTGAGA 57.770 29.630 0.00 0.00 0.00 3.27
626 648 9.495754 GTCAAAAATGCTCTTATATTGTGAGAC 57.504 33.333 0.00 0.00 0.00 3.36
628 650 6.851222 AAATGCTCTTATATTGTGAGACGG 57.149 37.500 0.00 0.00 0.00 4.79
630 652 5.791336 TGCTCTTATATTGTGAGACGGAT 57.209 39.130 0.00 0.00 0.00 4.18
632 654 4.926238 GCTCTTATATTGTGAGACGGATGG 59.074 45.833 0.00 0.00 0.00 3.51
633 655 5.279006 GCTCTTATATTGTGAGACGGATGGA 60.279 44.000 0.00 0.00 0.00 3.41
636 658 7.002276 TCTTATATTGTGAGACGGATGGAGTA 58.998 38.462 0.00 0.00 0.00 2.59
638 660 3.801114 TTGTGAGACGGATGGAGTATG 57.199 47.619 0.00 0.00 0.00 2.39
640 662 3.566351 TGTGAGACGGATGGAGTATGAT 58.434 45.455 0.00 0.00 0.00 2.45
641 663 4.725490 TGTGAGACGGATGGAGTATGATA 58.275 43.478 0.00 0.00 0.00 2.15
643 665 5.775195 TGTGAGACGGATGGAGTATGATATT 59.225 40.000 0.00 0.00 0.00 1.28
644 666 6.267699 TGTGAGACGGATGGAGTATGATATTT 59.732 38.462 0.00 0.00 0.00 1.40
645 667 7.450323 TGTGAGACGGATGGAGTATGATATTTA 59.550 37.037 0.00 0.00 0.00 1.40
646 668 8.304596 GTGAGACGGATGGAGTATGATATTTAA 58.695 37.037 0.00 0.00 0.00 1.52
647 669 9.035890 TGAGACGGATGGAGTATGATATTTAAT 57.964 33.333 0.00 0.00 0.00 1.40
677 699 7.182060 AGGTTTCAGCCCTTTATGATAGAAAA 58.818 34.615 0.00 0.00 0.00 2.29
678 700 7.673926 AGGTTTCAGCCCTTTATGATAGAAAAA 59.326 33.333 0.00 0.00 0.00 1.94
724 748 0.884704 TTGAGAAAGAGCACGGGCAC 60.885 55.000 14.57 5.35 44.61 5.01
725 749 1.004440 GAGAAAGAGCACGGGCACT 60.004 57.895 14.57 8.62 43.10 4.40
728 752 3.749981 AAGAGCACGGGCACTTTG 58.250 55.556 17.05 0.00 46.74 2.77
729 753 2.555547 AAGAGCACGGGCACTTTGC 61.556 57.895 17.05 0.00 46.74 3.68
921 1036 1.896465 CTCGACCCACCTTCTTCTTCT 59.104 52.381 0.00 0.00 0.00 2.85
925 1040 1.705745 ACCCACCTTCTTCTTCTTCCC 59.294 52.381 0.00 0.00 0.00 3.97
927 1042 1.988846 CCACCTTCTTCTTCTTCCCCT 59.011 52.381 0.00 0.00 0.00 4.79
928 1043 2.290577 CCACCTTCTTCTTCTTCCCCTG 60.291 54.545 0.00 0.00 0.00 4.45
930 1045 2.640332 ACCTTCTTCTTCTTCCCCTGTC 59.360 50.000 0.00 0.00 0.00 3.51
969 1084 0.315886 CCGTTTACCCAAACCCTTGC 59.684 55.000 0.00 0.00 40.87 4.01
1023 1139 1.454847 CGGTCCTCCTCTCCTCTGG 60.455 68.421 0.00 0.00 0.00 3.86
1024 1140 1.760480 GGTCCTCCTCTCCTCTGGC 60.760 68.421 0.00 0.00 0.00 4.85
1025 1141 1.760480 GTCCTCCTCTCCTCTGGCC 60.760 68.421 0.00 0.00 0.00 5.36
1026 1142 2.837291 CCTCCTCTCCTCTGGCCG 60.837 72.222 0.00 0.00 0.00 6.13
1330 1553 1.460497 GGAGGATGAGGAGGGGTCC 60.460 68.421 0.00 0.00 0.00 4.46
1331 1554 1.834822 GAGGATGAGGAGGGGTCCG 60.835 68.421 0.00 0.00 35.89 4.79
1332 1555 2.282446 GGATGAGGAGGGGTCCGA 59.718 66.667 0.00 0.00 34.28 4.55
1333 1556 1.834822 GGATGAGGAGGGGTCCGAG 60.835 68.421 0.00 0.00 34.28 4.63
1334 1557 1.834822 GATGAGGAGGGGTCCGAGG 60.835 68.421 0.00 0.00 34.28 4.63
1335 1558 3.396822 ATGAGGAGGGGTCCGAGGG 62.397 68.421 0.00 0.00 34.28 4.30
1407 1630 1.204113 AAGAAGGAGACTGGGGGCAG 61.204 60.000 0.00 0.00 42.68 4.85
1638 2858 3.380142 CAGTGGTGTTTGTTGTAATGCC 58.620 45.455 0.00 0.00 0.00 4.40
1648 2868 5.543507 TTGTTGTAATGCCTGGTTGATTT 57.456 34.783 0.00 0.00 0.00 2.17
1652 2872 5.327616 TGTAATGCCTGGTTGATTTGATG 57.672 39.130 0.00 0.00 0.00 3.07
1676 2896 2.363788 TGTGCTTAGACGTGTGATCC 57.636 50.000 0.00 0.00 0.00 3.36
1731 2974 6.760770 AGCTCAAGATTACATGTCTTTCTAGC 59.239 38.462 0.00 9.86 35.59 3.42
1758 3001 7.757624 TCAACCAGTTACTTGTTTCAACATTTC 59.242 33.333 0.00 0.00 38.95 2.17
1771 4688 8.878769 TGTTTCAACATTTCTTTTAGAAAAGCC 58.121 29.630 9.45 0.00 46.08 4.35
1774 4691 9.744468 TTCAACATTTCTTTTAGAAAAGCCTAC 57.256 29.630 9.45 0.00 46.08 3.18
1782 4699 5.934935 TTTAGAAAAGCCTACCTGTTTCG 57.065 39.130 0.00 0.00 35.58 3.46
1789 4706 4.189639 AGCCTACCTGTTTCGAGTAAAG 57.810 45.455 0.00 0.00 0.00 1.85
1804 4721 7.001099 TCGAGTAAAGTTCTTTCTTATGGGT 57.999 36.000 0.87 0.00 0.00 4.51
1809 4726 9.588096 AGTAAAGTTCTTTCTTATGGGTGAAAT 57.412 29.630 0.87 0.00 32.65 2.17
1852 4769 6.913873 GCATGAGCAATGTGGATTTTTATT 57.086 33.333 0.00 0.00 41.58 1.40
1856 4773 8.600625 CATGAGCAATGTGGATTTTTATTTGAG 58.399 33.333 0.00 0.00 0.00 3.02
1897 4814 7.898014 CCTAAAGGGCCTTGTAAGAAAATAT 57.102 36.000 21.72 1.32 0.00 1.28
1925 4842 7.954666 TTTTTAGGAAGAGATTATTGTGGGG 57.045 36.000 0.00 0.00 0.00 4.96
1942 4859 1.739750 GGGTGATGATCAGGGGAGAT 58.260 55.000 0.09 0.00 0.00 2.75
1988 4905 1.177401 GCCTTTGGATCAAGTGGGTC 58.823 55.000 0.00 0.00 0.00 4.46
1991 4908 2.440409 CTTTGGATCAAGTGGGTCTGG 58.560 52.381 0.00 0.00 0.00 3.86
2004 4921 2.312390 GGGTCTGGAGTAGTGGATCTC 58.688 57.143 0.00 0.00 0.00 2.75
2021 6665 5.046591 TGGATCTCGAGGTTAAGAATGTTGT 60.047 40.000 13.56 0.00 0.00 3.32
2022 6666 5.875359 GGATCTCGAGGTTAAGAATGTTGTT 59.125 40.000 13.56 0.00 0.00 2.83
2088 8969 6.638468 GGAACTGTTGCAGAGTTTAATTCTTG 59.362 38.462 12.91 0.00 33.71 3.02
2093 8976 7.725251 TGTTGCAGAGTTTAATTCTTGGAAAT 58.275 30.769 0.00 0.00 0.00 2.17
2148 9035 4.333649 TCAATTTAAGGCTGCTCAATCTCG 59.666 41.667 0.00 0.00 0.00 4.04
2179 9066 0.892063 GAGACCTGACAGTGGGAGAC 59.108 60.000 0.93 0.00 0.00 3.36
2182 9069 0.759436 ACCTGACAGTGGGAGACGTT 60.759 55.000 0.93 0.00 0.00 3.99
2191 9078 2.167900 AGTGGGAGACGTTGTTATAGGC 59.832 50.000 0.00 0.00 0.00 3.93
2212 9099 5.188359 AGGCTTGTAGAAAAATAGTCGGGTA 59.812 40.000 0.00 0.00 0.00 3.69
2216 9103 7.065443 GCTTGTAGAAAAATAGTCGGGTATTGT 59.935 37.037 0.00 0.00 0.00 2.71
2266 9160 8.765488 ATTTTTATATGGGATGATGTGTGACA 57.235 30.769 0.00 0.00 0.00 3.58
2267 9161 8.765488 TTTTTATATGGGATGATGTGTGACAT 57.235 30.769 0.00 0.00 42.43 3.06
2268 9162 7.748691 TTTATATGGGATGATGTGTGACATG 57.251 36.000 0.00 0.00 39.27 3.21
2269 9163 2.423446 TGGGATGATGTGTGACATGG 57.577 50.000 0.00 0.00 39.27 3.66
2270 9164 1.634973 TGGGATGATGTGTGACATGGT 59.365 47.619 0.00 0.00 39.27 3.55
2271 9165 2.041485 TGGGATGATGTGTGACATGGTT 59.959 45.455 0.00 0.00 39.27 3.67
2272 9166 3.091545 GGGATGATGTGTGACATGGTTT 58.908 45.455 0.00 0.00 39.27 3.27
2273 9167 3.511146 GGGATGATGTGTGACATGGTTTT 59.489 43.478 0.00 0.00 39.27 2.43
2274 9168 4.021192 GGGATGATGTGTGACATGGTTTTT 60.021 41.667 0.00 0.00 39.27 1.94
2275 9169 4.925054 GGATGATGTGTGACATGGTTTTTG 59.075 41.667 0.00 0.00 39.27 2.44
2276 9170 5.278907 GGATGATGTGTGACATGGTTTTTGA 60.279 40.000 0.00 0.00 39.27 2.69
2277 9171 5.185668 TGATGTGTGACATGGTTTTTGAG 57.814 39.130 0.00 0.00 39.27 3.02
2278 9172 4.644234 TGATGTGTGACATGGTTTTTGAGT 59.356 37.500 0.00 0.00 39.27 3.41
2279 9173 4.630894 TGTGTGACATGGTTTTTGAGTC 57.369 40.909 0.00 0.00 0.00 3.36
2280 9174 3.064682 TGTGTGACATGGTTTTTGAGTCG 59.935 43.478 0.00 0.00 32.08 4.18
2281 9175 2.032799 TGTGACATGGTTTTTGAGTCGC 59.967 45.455 0.00 0.00 39.46 5.19
2282 9176 1.262950 TGACATGGTTTTTGAGTCGCG 59.737 47.619 0.00 0.00 32.08 5.87
2283 9177 1.263217 GACATGGTTTTTGAGTCGCGT 59.737 47.619 5.77 0.00 0.00 6.01
2284 9178 1.002900 ACATGGTTTTTGAGTCGCGTG 60.003 47.619 5.77 0.00 0.00 5.34
2285 9179 1.262950 CATGGTTTTTGAGTCGCGTGA 59.737 47.619 5.77 0.00 0.00 4.35
2286 9180 0.653636 TGGTTTTTGAGTCGCGTGAC 59.346 50.000 21.32 21.32 45.86 3.67
2295 9189 2.842995 GTCGCGTGACTAGTCGATG 58.157 57.895 21.55 12.77 42.08 3.84
2296 9190 0.372679 GTCGCGTGACTAGTCGATGA 59.627 55.000 21.55 10.06 42.08 2.92
2297 9191 0.651031 TCGCGTGACTAGTCGATGAG 59.349 55.000 17.85 13.21 0.00 2.90
2298 9192 0.374063 CGCGTGACTAGTCGATGAGT 59.626 55.000 17.85 2.09 0.00 3.41
2299 9193 1.592590 CGCGTGACTAGTCGATGAGTC 60.593 57.143 17.85 18.10 42.08 3.36
2326 9220 5.852738 AAAAATGTCGACTCATGACTCAG 57.147 39.130 17.92 0.00 37.26 3.35
2327 9221 4.527509 AAATGTCGACTCATGACTCAGT 57.472 40.909 17.92 0.00 37.26 3.41
2328 9222 3.773860 ATGTCGACTCATGACTCAGTC 57.226 47.619 17.92 0.00 37.26 3.51
2331 9225 2.937026 GACTCATGACTCAGTCGCG 58.063 57.895 0.00 0.00 34.95 5.87
2332 9226 0.448197 GACTCATGACTCAGTCGCGA 59.552 55.000 3.71 3.71 34.95 5.87
2333 9227 0.169230 ACTCATGACTCAGTCGCGAC 59.831 55.000 31.30 31.30 34.95 5.19
2334 9228 0.449786 CTCATGACTCAGTCGCGACT 59.550 55.000 34.98 34.98 43.61 4.18
2335 9229 1.666189 CTCATGACTCAGTCGCGACTA 59.334 52.381 38.75 24.82 40.20 2.59
2336 9230 1.666189 TCATGACTCAGTCGCGACTAG 59.334 52.381 38.75 32.47 40.20 2.57
2337 9231 1.398739 CATGACTCAGTCGCGACTAGT 59.601 52.381 38.75 34.88 40.20 2.57
2338 9232 1.077123 TGACTCAGTCGCGACTAGTC 58.923 55.000 38.05 38.05 40.20 2.59
2356 9250 3.044305 GCAACTGCGGCTCGACTT 61.044 61.111 0.00 0.00 0.00 3.01
2357 9251 2.607892 GCAACTGCGGCTCGACTTT 61.608 57.895 0.00 0.00 0.00 2.66
2358 9252 1.941812 CAACTGCGGCTCGACTTTT 59.058 52.632 0.00 0.00 0.00 2.27
2359 9253 0.307760 CAACTGCGGCTCGACTTTTT 59.692 50.000 0.00 0.00 0.00 1.94
2360 9254 0.586802 AACTGCGGCTCGACTTTTTC 59.413 50.000 0.00 0.00 0.00 2.29
2361 9255 1.228657 ACTGCGGCTCGACTTTTTCC 61.229 55.000 0.00 0.00 0.00 3.13
2362 9256 2.227968 CTGCGGCTCGACTTTTTCCG 62.228 60.000 0.00 0.00 42.68 4.30
2363 9257 2.025418 GCGGCTCGACTTTTTCCGA 61.025 57.895 2.94 0.00 42.43 4.55
2372 9266 1.991264 GACTTTTTCCGAGTCGCTACC 59.009 52.381 7.12 0.00 34.76 3.18
2373 9267 1.337541 ACTTTTTCCGAGTCGCTACCC 60.338 52.381 7.12 0.00 0.00 3.69
2374 9268 0.037046 TTTTTCCGAGTCGCTACCCC 60.037 55.000 7.12 0.00 0.00 4.95
2375 9269 1.186917 TTTTCCGAGTCGCTACCCCA 61.187 55.000 7.12 0.00 0.00 4.96
2376 9270 1.601419 TTTCCGAGTCGCTACCCCAG 61.601 60.000 7.12 0.00 0.00 4.45
2377 9271 2.439701 CCGAGTCGCTACCCCAGA 60.440 66.667 7.12 0.00 0.00 3.86
2378 9272 2.050350 CCGAGTCGCTACCCCAGAA 61.050 63.158 7.12 0.00 0.00 3.02
2379 9273 1.139095 CGAGTCGCTACCCCAGAAC 59.861 63.158 0.00 0.00 0.00 3.01
2380 9274 1.592400 CGAGTCGCTACCCCAGAACA 61.592 60.000 0.00 0.00 0.00 3.18
2381 9275 0.606604 GAGTCGCTACCCCAGAACAA 59.393 55.000 0.00 0.00 0.00 2.83
2382 9276 0.320697 AGTCGCTACCCCAGAACAAC 59.679 55.000 0.00 0.00 0.00 3.32
2383 9277 0.320697 GTCGCTACCCCAGAACAACT 59.679 55.000 0.00 0.00 0.00 3.16
2384 9278 0.606604 TCGCTACCCCAGAACAACTC 59.393 55.000 0.00 0.00 0.00 3.01
2385 9279 0.320374 CGCTACCCCAGAACAACTCA 59.680 55.000 0.00 0.00 0.00 3.41
2386 9280 1.066143 CGCTACCCCAGAACAACTCAT 60.066 52.381 0.00 0.00 0.00 2.90
2387 9281 2.167693 CGCTACCCCAGAACAACTCATA 59.832 50.000 0.00 0.00 0.00 2.15
2388 9282 3.738281 CGCTACCCCAGAACAACTCATAG 60.738 52.174 0.00 0.00 0.00 2.23
2389 9283 3.451178 GCTACCCCAGAACAACTCATAGA 59.549 47.826 0.00 0.00 0.00 1.98
2390 9284 3.983044 ACCCCAGAACAACTCATAGAC 57.017 47.619 0.00 0.00 0.00 2.59
2391 9285 3.521727 ACCCCAGAACAACTCATAGACT 58.478 45.455 0.00 0.00 0.00 3.24
2392 9286 3.515901 ACCCCAGAACAACTCATAGACTC 59.484 47.826 0.00 0.00 0.00 3.36
2393 9287 3.429547 CCCCAGAACAACTCATAGACTCG 60.430 52.174 0.00 0.00 0.00 4.18
2394 9288 3.444034 CCCAGAACAACTCATAGACTCGA 59.556 47.826 0.00 0.00 0.00 4.04
2395 9289 4.082190 CCCAGAACAACTCATAGACTCGAA 60.082 45.833 0.00 0.00 0.00 3.71
2396 9290 5.470368 CCAGAACAACTCATAGACTCGAAA 58.530 41.667 0.00 0.00 0.00 3.46
2397 9291 5.926542 CCAGAACAACTCATAGACTCGAAAA 59.073 40.000 0.00 0.00 0.00 2.29
2398 9292 6.128795 CCAGAACAACTCATAGACTCGAAAAC 60.129 42.308 0.00 0.00 0.00 2.43
2399 9293 5.927115 AGAACAACTCATAGACTCGAAAACC 59.073 40.000 0.00 0.00 0.00 3.27
2400 9294 5.209818 ACAACTCATAGACTCGAAAACCA 57.790 39.130 0.00 0.00 0.00 3.67
2401 9295 5.794894 ACAACTCATAGACTCGAAAACCAT 58.205 37.500 0.00 0.00 0.00 3.55
2402 9296 5.639506 ACAACTCATAGACTCGAAAACCATG 59.360 40.000 0.00 0.00 0.00 3.66
2403 9297 5.661056 ACTCATAGACTCGAAAACCATGA 57.339 39.130 0.00 0.00 0.00 3.07
2404 9298 6.227298 ACTCATAGACTCGAAAACCATGAT 57.773 37.500 0.00 0.00 0.00 2.45
2405 9299 6.045318 ACTCATAGACTCGAAAACCATGATG 58.955 40.000 0.00 0.00 0.00 3.07
2406 9300 5.977635 TCATAGACTCGAAAACCATGATGT 58.022 37.500 0.00 0.00 0.00 3.06
2407 9301 5.812127 TCATAGACTCGAAAACCATGATGTG 59.188 40.000 0.00 0.00 0.00 3.21
2408 9302 4.008074 AGACTCGAAAACCATGATGTGT 57.992 40.909 0.00 0.00 0.00 3.72
2409 9303 3.748048 AGACTCGAAAACCATGATGTGTG 59.252 43.478 0.00 0.00 0.00 3.82
2410 9304 3.738982 ACTCGAAAACCATGATGTGTGA 58.261 40.909 0.00 0.00 0.00 3.58
2411 9305 4.326826 ACTCGAAAACCATGATGTGTGAT 58.673 39.130 0.00 0.00 0.00 3.06
2412 9306 5.487433 ACTCGAAAACCATGATGTGTGATA 58.513 37.500 0.00 0.00 0.00 2.15
2413 9307 5.582269 ACTCGAAAACCATGATGTGTGATAG 59.418 40.000 0.00 0.00 0.00 2.08
2425 9319 2.703536 TGTGTGATAGTGTGGGTCTGTT 59.296 45.455 0.00 0.00 0.00 3.16
2426 9320 3.898741 TGTGTGATAGTGTGGGTCTGTTA 59.101 43.478 0.00 0.00 0.00 2.41
2453 9370 4.682563 AGGAGGATAGGTGTAGATGGATG 58.317 47.826 0.00 0.00 0.00 3.51
2454 9371 3.196685 GGAGGATAGGTGTAGATGGATGC 59.803 52.174 0.00 0.00 0.00 3.91
2455 9372 4.093011 GAGGATAGGTGTAGATGGATGCT 58.907 47.826 0.00 0.00 0.00 3.79
2456 9373 4.093011 AGGATAGGTGTAGATGGATGCTC 58.907 47.826 0.00 0.00 0.00 4.26
2457 9374 3.834813 GGATAGGTGTAGATGGATGCTCA 59.165 47.826 0.00 0.00 0.00 4.26
2458 9375 4.081752 GGATAGGTGTAGATGGATGCTCAG 60.082 50.000 0.00 0.00 0.00 3.35
2459 9376 1.415659 AGGTGTAGATGGATGCTCAGC 59.584 52.381 0.00 0.00 0.00 4.26
2460 9377 1.139654 GGTGTAGATGGATGCTCAGCA 59.860 52.381 0.00 0.00 44.86 4.41
2461 9378 2.481854 GTGTAGATGGATGCTCAGCAG 58.518 52.381 5.13 0.00 43.65 4.24
2462 9379 2.102084 GTGTAGATGGATGCTCAGCAGA 59.898 50.000 5.13 0.00 43.65 4.26
2463 9380 2.102084 TGTAGATGGATGCTCAGCAGAC 59.898 50.000 5.13 0.16 43.65 3.51
2464 9381 0.469070 AGATGGATGCTCAGCAGACC 59.531 55.000 16.15 16.15 43.65 3.85
2465 9382 0.469070 GATGGATGCTCAGCAGACCT 59.531 55.000 21.38 10.66 43.65 3.85
2466 9383 0.180642 ATGGATGCTCAGCAGACCTG 59.819 55.000 21.38 0.00 43.65 4.00
2467 9384 1.153208 GGATGCTCAGCAGACCTGG 60.153 63.158 15.84 0.00 43.65 4.45
2468 9385 1.818785 GATGCTCAGCAGACCTGGC 60.819 63.158 5.13 0.00 43.65 4.85
2469 9386 2.254737 GATGCTCAGCAGACCTGGCT 62.255 60.000 5.13 0.00 43.65 4.75
2470 9387 0.979709 ATGCTCAGCAGACCTGGCTA 60.980 55.000 5.13 0.00 43.65 3.93
2471 9388 1.194121 TGCTCAGCAGACCTGGCTAA 61.194 55.000 0.00 0.00 40.23 3.09
2472 9389 0.461693 GCTCAGCAGACCTGGCTAAG 60.462 60.000 0.00 0.00 40.23 2.18
2473 9390 0.901124 CTCAGCAGACCTGGCTAAGT 59.099 55.000 0.00 0.00 40.23 2.24
2474 9391 2.103373 CTCAGCAGACCTGGCTAAGTA 58.897 52.381 0.00 0.00 40.23 2.24
2475 9392 2.697751 CTCAGCAGACCTGGCTAAGTAT 59.302 50.000 0.00 0.00 40.23 2.12
2476 9393 3.107601 TCAGCAGACCTGGCTAAGTATT 58.892 45.455 0.00 0.00 40.23 1.89
2477 9394 3.519510 TCAGCAGACCTGGCTAAGTATTT 59.480 43.478 0.00 0.00 40.23 1.40
2478 9395 3.624861 CAGCAGACCTGGCTAAGTATTTG 59.375 47.826 0.00 0.00 40.23 2.32
2479 9396 2.356069 GCAGACCTGGCTAAGTATTTGC 59.644 50.000 0.00 0.00 46.06 3.68
2497 9414 0.461548 GCCCCTGAAATTAGCCAAGC 59.538 55.000 0.00 0.00 0.00 4.01
2536 9453 2.128771 ACTGTGGCTTGTTGAAGTGT 57.871 45.000 0.00 0.00 0.00 3.55
2541 9458 3.119531 TGTGGCTTGTTGAAGTGTCTTTG 60.120 43.478 0.00 0.00 0.00 2.77
2546 9463 5.062183 GGCTTGTTGAAGTGTCTTTGAAAAC 59.938 40.000 0.00 0.00 0.00 2.43
2572 9489 6.986231 CAGAGTTTTTATTTGGCTGGTTCTTT 59.014 34.615 0.00 0.00 0.00 2.52
2573 9490 6.986231 AGAGTTTTTATTTGGCTGGTTCTTTG 59.014 34.615 0.00 0.00 0.00 2.77
2594 9511 9.547753 TCTTTGATATAGCATTTCAACTAGGAC 57.452 33.333 0.00 0.00 31.49 3.85
2596 9513 8.893219 TTGATATAGCATTTCAACTAGGACAG 57.107 34.615 0.00 0.00 0.00 3.51
2602 9544 4.937620 GCATTTCAACTAGGACAGTGATGA 59.062 41.667 0.00 0.00 37.63 2.92
2616 9558 4.098654 ACAGTGATGAGTATGGTCTGTAGC 59.901 45.833 0.00 0.00 33.78 3.58
2624 9566 2.145397 ATGGTCTGTAGCGAAGAGGA 57.855 50.000 0.00 0.00 0.00 3.71
2646 9588 5.045505 GGAGACCCTAGATCACCTTTTTCTT 60.046 44.000 0.00 0.00 0.00 2.52
2684 9631 7.749666 AGTATGGCTAGATATGTTTGGAATGT 58.250 34.615 0.00 0.00 0.00 2.71
2685 9632 6.889301 ATGGCTAGATATGTTTGGAATGTG 57.111 37.500 0.00 0.00 0.00 3.21
2686 9633 6.000246 TGGCTAGATATGTTTGGAATGTGA 58.000 37.500 0.00 0.00 0.00 3.58
2719 9666 6.026513 GCTTTGAAGATTGATGCAACTAGAC 58.973 40.000 0.00 0.00 0.00 2.59
2757 9704 3.598019 CGTAGGTGGGTAGCTGTTTTA 57.402 47.619 0.00 0.00 35.90 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.594321 CGGCATACAACAAACATGTGG 58.406 47.619 0.00 0.00 32.27 4.17
3 4 2.487762 CTCCGGCATACAACAAACATGT 59.512 45.455 0.00 0.00 34.81 3.21
4 5 2.487762 ACTCCGGCATACAACAAACATG 59.512 45.455 0.00 0.00 0.00 3.21
5 6 2.747446 GACTCCGGCATACAACAAACAT 59.253 45.455 0.00 0.00 0.00 2.71
6 7 2.147958 GACTCCGGCATACAACAAACA 58.852 47.619 0.00 0.00 0.00 2.83
26 27 1.452108 GCCAAATCAGTCCGGGGAG 60.452 63.158 0.00 0.00 0.00 4.30
28 29 0.254747 TAAGCCAAATCAGTCCGGGG 59.745 55.000 0.00 0.00 0.00 5.73
47 48 0.839853 AGAGAAGGCAGTTCCCAGCT 60.840 55.000 0.00 0.00 35.51 4.24
68 69 8.360390 TGAACAGCTAGTTGGAGTATATATGTG 58.640 37.037 11.56 0.00 41.51 3.21
69 70 8.361139 GTGAACAGCTAGTTGGAGTATATATGT 58.639 37.037 11.56 0.00 41.51 2.29
70 71 8.580720 AGTGAACAGCTAGTTGGAGTATATATG 58.419 37.037 11.56 0.00 41.51 1.78
71 72 8.580720 CAGTGAACAGCTAGTTGGAGTATATAT 58.419 37.037 11.56 0.00 41.51 0.86
72 73 7.560262 ACAGTGAACAGCTAGTTGGAGTATATA 59.440 37.037 11.56 0.00 41.51 0.86
74 75 5.715279 ACAGTGAACAGCTAGTTGGAGTATA 59.285 40.000 11.56 0.00 41.51 1.47
75 76 4.528596 ACAGTGAACAGCTAGTTGGAGTAT 59.471 41.667 11.56 0.00 41.51 2.12
77 78 2.700897 ACAGTGAACAGCTAGTTGGAGT 59.299 45.455 11.56 0.00 41.51 3.85
78 79 3.393089 ACAGTGAACAGCTAGTTGGAG 57.607 47.619 11.56 0.00 41.51 3.86
79 80 4.322725 CCATACAGTGAACAGCTAGTTGGA 60.323 45.833 11.56 0.00 41.51 3.53
80 81 3.935203 CCATACAGTGAACAGCTAGTTGG 59.065 47.826 11.56 0.00 41.51 3.77
81 82 3.372206 GCCATACAGTGAACAGCTAGTTG 59.628 47.826 4.86 4.86 41.51 3.16
83 84 2.093447 GGCCATACAGTGAACAGCTAGT 60.093 50.000 0.00 0.00 0.00 2.57
84 85 2.093500 TGGCCATACAGTGAACAGCTAG 60.093 50.000 0.00 0.00 0.00 3.42
85 86 1.905894 TGGCCATACAGTGAACAGCTA 59.094 47.619 0.00 0.00 0.00 3.32
113 114 9.702494 GAACCATCTGAAGAATTTGAAATTTCT 57.298 29.630 18.64 0.00 33.69 2.52
126 127 6.005823 ACAATTCACATGAACCATCTGAAGA 58.994 36.000 0.00 0.00 33.68 2.87
136 137 7.435068 AAGTACCAGTACAATTCACATGAAC 57.565 36.000 10.41 0.00 38.48 3.18
154 155 8.779354 AGATTCATAAGAAGTGTGAAAGTACC 57.221 34.615 0.00 0.00 40.32 3.34
158 159 7.540055 GGCAAAGATTCATAAGAAGTGTGAAAG 59.460 37.037 0.00 0.00 40.32 2.62
222 233 3.083293 CACACACCATCATCACCATTCA 58.917 45.455 0.00 0.00 0.00 2.57
233 244 1.936203 GCAAACATGCCACACACCATC 60.936 52.381 0.00 0.00 0.00 3.51
292 303 2.888863 GGCTGGTCCAGAGAGACG 59.111 66.667 23.77 0.00 37.66 4.18
293 304 2.888863 CGGCTGGTCCAGAGAGAC 59.111 66.667 23.77 3.92 32.44 3.36
299 310 4.864334 GGGATGCGGCTGGTCCAG 62.864 72.222 15.15 15.15 33.62 3.86
310 321 0.179006 GATGGGGTGAGAAGGGATGC 60.179 60.000 0.00 0.00 0.00 3.91
362 373 7.797038 AAACTTGAAATAGAGTTTGGTACGT 57.203 32.000 0.00 0.00 42.67 3.57
399 410 4.403752 TGTCAACACATTCAAAATGGACCA 59.596 37.500 0.00 0.00 0.00 4.02
400 411 4.744631 GTGTCAACACATTCAAAATGGACC 59.255 41.667 8.37 0.00 45.75 4.46
414 425 3.782889 AGCAAGGAAAAGTGTCAACAC 57.217 42.857 5.11 5.11 46.77 3.32
415 426 4.799564 AAAGCAAGGAAAAGTGTCAACA 57.200 36.364 0.00 0.00 0.00 3.33
420 431 2.170397 CCCCAAAAGCAAGGAAAAGTGT 59.830 45.455 0.00 0.00 0.00 3.55
421 432 2.433970 TCCCCAAAAGCAAGGAAAAGTG 59.566 45.455 0.00 0.00 0.00 3.16
423 434 2.037641 CCTCCCCAAAAGCAAGGAAAAG 59.962 50.000 0.00 0.00 0.00 2.27
425 436 1.219213 TCCTCCCCAAAAGCAAGGAAA 59.781 47.619 0.00 0.00 33.27 3.13
427 438 0.856982 TTCCTCCCCAAAAGCAAGGA 59.143 50.000 0.00 0.00 34.36 3.36
432 454 0.827507 TGTGCTTCCTCCCCAAAAGC 60.828 55.000 0.00 0.00 44.41 3.51
469 491 3.273084 TTCTTTTGCGCGCCGTGA 61.273 55.556 30.77 18.11 0.00 4.35
472 494 2.126888 ATGTTCTTTTGCGCGCCG 60.127 55.556 30.77 14.41 0.00 6.46
476 498 2.472488 CCAAAGTCATGTTCTTTTGCGC 59.528 45.455 0.00 0.00 33.58 6.09
489 511 6.041409 TGAAATATTTGAAGGTGCCAAAGTCA 59.959 34.615 5.17 0.00 37.00 3.41
547 569 5.252397 TGAGACAGAGGGAGTAGGTACTTAA 59.748 44.000 0.00 0.00 41.75 1.85
549 571 3.592427 TGAGACAGAGGGAGTAGGTACTT 59.408 47.826 0.00 0.00 41.75 2.24
550 572 3.191273 TGAGACAGAGGGAGTAGGTACT 58.809 50.000 0.00 0.00 46.37 2.73
551 573 3.648507 TGAGACAGAGGGAGTAGGTAC 57.351 52.381 0.00 0.00 0.00 3.34
553 575 4.883021 TTATGAGACAGAGGGAGTAGGT 57.117 45.455 0.00 0.00 0.00 3.08
554 576 9.707957 ATTATATTATGAGACAGAGGGAGTAGG 57.292 37.037 0.00 0.00 0.00 3.18
599 621 9.230122 TCTCACAATATAAGAGCATTTTTGACA 57.770 29.630 0.00 0.00 0.00 3.58
600 622 9.495754 GTCTCACAATATAAGAGCATTTTTGAC 57.504 33.333 0.00 0.00 0.00 3.18
601 623 8.390354 CGTCTCACAATATAAGAGCATTTTTGA 58.610 33.333 0.00 0.00 0.00 2.69
603 625 7.552687 TCCGTCTCACAATATAAGAGCATTTTT 59.447 33.333 0.00 0.00 0.00 1.94
604 626 7.047891 TCCGTCTCACAATATAAGAGCATTTT 58.952 34.615 0.00 0.00 0.00 1.82
606 628 6.161855 TCCGTCTCACAATATAAGAGCATT 57.838 37.500 0.00 0.00 0.00 3.56
607 629 5.791336 TCCGTCTCACAATATAAGAGCAT 57.209 39.130 0.00 0.00 0.00 3.79
610 632 6.015856 ACTCCATCCGTCTCACAATATAAGAG 60.016 42.308 0.00 0.00 0.00 2.85
611 633 5.833667 ACTCCATCCGTCTCACAATATAAGA 59.166 40.000 0.00 0.00 0.00 2.10
612 634 6.090483 ACTCCATCCGTCTCACAATATAAG 57.910 41.667 0.00 0.00 0.00 1.73
613 635 7.450323 TCATACTCCATCCGTCTCACAATATAA 59.550 37.037 0.00 0.00 0.00 0.98
614 636 6.946009 TCATACTCCATCCGTCTCACAATATA 59.054 38.462 0.00 0.00 0.00 0.86
615 637 5.775195 TCATACTCCATCCGTCTCACAATAT 59.225 40.000 0.00 0.00 0.00 1.28
616 638 5.137551 TCATACTCCATCCGTCTCACAATA 58.862 41.667 0.00 0.00 0.00 1.90
617 639 3.960755 TCATACTCCATCCGTCTCACAAT 59.039 43.478 0.00 0.00 0.00 2.71
618 640 3.361786 TCATACTCCATCCGTCTCACAA 58.638 45.455 0.00 0.00 0.00 3.33
620 642 5.906113 ATATCATACTCCATCCGTCTCAC 57.094 43.478 0.00 0.00 0.00 3.51
648 670 9.338968 TCTATCATAAAGGGCTGAAACCTATAT 57.661 33.333 0.00 0.00 37.35 0.86
649 671 8.736097 TCTATCATAAAGGGCTGAAACCTATA 57.264 34.615 0.00 0.00 37.35 1.31
650 672 7.633018 TCTATCATAAAGGGCTGAAACCTAT 57.367 36.000 0.00 0.00 37.35 2.57
752 777 0.605319 TCCTGTTAGCAAAGTGCCCG 60.605 55.000 0.00 0.00 46.52 6.13
845 957 1.964373 CCCAACCCAGGAACGTTCG 60.964 63.158 21.34 10.45 0.00 3.95
921 1036 0.787084 ACAGGAGAGAGACAGGGGAA 59.213 55.000 0.00 0.00 0.00 3.97
925 1040 2.226330 CGGATACAGGAGAGAGACAGG 58.774 57.143 0.00 0.00 0.00 4.00
927 1042 1.213182 AGCGGATACAGGAGAGAGACA 59.787 52.381 0.00 0.00 0.00 3.41
928 1043 1.877443 GAGCGGATACAGGAGAGAGAC 59.123 57.143 0.00 0.00 0.00 3.36
930 1045 0.871722 CGAGCGGATACAGGAGAGAG 59.128 60.000 0.00 0.00 0.00 3.20
995 1110 3.917760 GAGGACCGGAGCCGATGG 61.918 72.222 9.46 0.00 42.83 3.51
1023 1139 2.908940 CCATTGGAGGATGCCGGC 60.909 66.667 22.73 22.73 0.00 6.13
1024 1140 2.908940 GCCATTGGAGGATGCCGG 60.909 66.667 6.95 0.00 0.00 6.13
1025 1141 2.908940 GGCCATTGGAGGATGCCG 60.909 66.667 6.95 0.00 0.00 5.69
1026 1142 2.129785 GTGGCCATTGGAGGATGCC 61.130 63.158 9.72 0.00 0.00 4.40
1085 1230 3.119096 GGGCTTCTTGGCGTCGAC 61.119 66.667 5.18 5.18 42.84 4.20
1148 1311 2.034685 GCTTCTTCGGTTTTGGCTTCTT 59.965 45.455 0.00 0.00 0.00 2.52
1156 1334 3.142174 CTCCTTCTGCTTCTTCGGTTTT 58.858 45.455 0.00 0.00 0.00 2.43
1211 1389 0.979665 TTGGCAGAGACCTCCTTCTG 59.020 55.000 0.00 0.00 0.00 3.02
1213 1391 1.270907 TCTTGGCAGAGACCTCCTTC 58.729 55.000 0.00 0.00 0.00 3.46
1307 1527 0.471591 CCCTCCTCATCCTCCTCCTG 60.472 65.000 0.00 0.00 0.00 3.86
1375 1598 5.777732 AGTCTCCTTCTTGCTCTTCTTCTTA 59.222 40.000 0.00 0.00 0.00 2.10
1638 2858 5.356190 AGCACATAGTCATCAAATCAACCAG 59.644 40.000 0.00 0.00 0.00 4.00
1648 2868 4.157840 ACACGTCTAAGCACATAGTCATCA 59.842 41.667 0.00 0.00 0.00 3.07
1652 2872 4.092771 TCACACGTCTAAGCACATAGTC 57.907 45.455 0.00 0.00 0.00 2.59
1693 2913 9.944376 TGTAATCTTGAGCTCTTGTATAAAACT 57.056 29.630 16.19 0.00 0.00 2.66
1699 2934 7.790027 AGACATGTAATCTTGAGCTCTTGTAT 58.210 34.615 16.19 0.51 0.00 2.29
1718 2961 4.573900 ACTGGTTGAGCTAGAAAGACATG 58.426 43.478 0.00 0.00 0.00 3.21
1721 2964 5.785243 AGTAACTGGTTGAGCTAGAAAGAC 58.215 41.667 0.00 0.00 0.00 3.01
1731 2974 6.189677 TGTTGAAACAAGTAACTGGTTGAG 57.810 37.500 0.00 0.00 35.67 3.02
1758 3001 6.204108 TCGAAACAGGTAGGCTTTTCTAAAAG 59.796 38.462 10.23 10.23 46.25 2.27
1764 3010 3.400255 ACTCGAAACAGGTAGGCTTTTC 58.600 45.455 0.00 0.00 0.00 2.29
1771 4688 7.652507 AGAAAGAACTTTACTCGAAACAGGTAG 59.347 37.037 0.00 0.00 32.11 3.18
1774 4691 6.846325 AGAAAGAACTTTACTCGAAACAGG 57.154 37.500 0.00 0.00 32.11 4.00
1782 4699 8.617290 TTCACCCATAAGAAAGAACTTTACTC 57.383 34.615 0.00 0.00 32.11 2.59
1789 4706 9.358872 GATCAAATTTCACCCATAAGAAAGAAC 57.641 33.333 0.00 0.00 37.19 3.01
1804 4721 7.814107 GCAATACCTCAACAAGATCAAATTTCA 59.186 33.333 0.00 0.00 0.00 2.69
1809 4726 6.433716 TCATGCAATACCTCAACAAGATCAAA 59.566 34.615 0.00 0.00 0.00 2.69
1841 4758 7.812191 CGAACATTGACCTCAAATAAAAATCCA 59.188 33.333 0.00 0.00 39.55 3.41
1844 4761 8.576442 ACTCGAACATTGACCTCAAATAAAAAT 58.424 29.630 0.00 0.00 39.55 1.82
1852 4769 2.548057 GCAACTCGAACATTGACCTCAA 59.452 45.455 7.68 0.00 40.51 3.02
1920 4837 0.988145 TCCCCTGATCATCACCCCAC 60.988 60.000 0.00 0.00 0.00 4.61
1924 4841 3.784178 TCTATCTCCCCTGATCATCACC 58.216 50.000 0.00 0.00 0.00 4.02
1925 4842 5.070981 TGTTTCTATCTCCCCTGATCATCAC 59.929 44.000 0.00 0.00 0.00 3.06
1976 4893 3.100671 ACTACTCCAGACCCACTTGATC 58.899 50.000 0.00 0.00 0.00 2.92
1988 4905 2.226330 CCTCGAGATCCACTACTCCAG 58.774 57.143 15.71 0.00 0.00 3.86
1991 4908 5.124645 TCTTAACCTCGAGATCCACTACTC 58.875 45.833 15.71 0.00 0.00 2.59
2022 6666 9.757227 CTTCCATGTCCATTTACTTAACAAAAA 57.243 29.630 0.00 0.00 0.00 1.94
2088 8969 5.076873 TGGCCTGCCTAACATATTATTTCC 58.923 41.667 9.97 0.00 36.94 3.13
2093 8976 5.582950 AGATTGGCCTGCCTAACATATTA 57.417 39.130 9.97 0.00 36.94 0.98
2169 9056 3.782046 CCTATAACAACGTCTCCCACTG 58.218 50.000 0.00 0.00 0.00 3.66
2179 9066 9.916397 CTATTTTTCTACAAGCCTATAACAACG 57.084 33.333 0.00 0.00 0.00 4.10
2182 9069 9.309516 CGACTATTTTTCTACAAGCCTATAACA 57.690 33.333 0.00 0.00 0.00 2.41
2191 9078 8.488651 ACAATACCCGACTATTTTTCTACAAG 57.511 34.615 0.00 0.00 0.00 3.16
2207 9094 4.828829 ACCTAGTTTTGAGACAATACCCG 58.171 43.478 0.00 0.00 0.00 5.28
2240 9134 9.859152 TGTCACACATCATCCCATATAAAAATA 57.141 29.630 0.00 0.00 0.00 1.40
2241 9135 8.765488 TGTCACACATCATCCCATATAAAAAT 57.235 30.769 0.00 0.00 0.00 1.82
2242 9136 8.631797 CATGTCACACATCATCCCATATAAAAA 58.368 33.333 0.00 0.00 36.53 1.94
2243 9137 7.231115 CCATGTCACACATCATCCCATATAAAA 59.769 37.037 0.00 0.00 36.53 1.52
2244 9138 6.716173 CCATGTCACACATCATCCCATATAAA 59.284 38.462 0.00 0.00 36.53 1.40
2245 9139 6.183361 ACCATGTCACACATCATCCCATATAA 60.183 38.462 0.00 0.00 36.53 0.98
2246 9140 5.310331 ACCATGTCACACATCATCCCATATA 59.690 40.000 0.00 0.00 36.53 0.86
2247 9141 4.105217 ACCATGTCACACATCATCCCATAT 59.895 41.667 0.00 0.00 36.53 1.78
2248 9142 3.459227 ACCATGTCACACATCATCCCATA 59.541 43.478 0.00 0.00 36.53 2.74
2249 9143 2.242965 ACCATGTCACACATCATCCCAT 59.757 45.455 0.00 0.00 36.53 4.00
2250 9144 1.634973 ACCATGTCACACATCATCCCA 59.365 47.619 0.00 0.00 36.53 4.37
2251 9145 2.425143 ACCATGTCACACATCATCCC 57.575 50.000 0.00 0.00 36.53 3.85
2252 9146 4.789012 AAAACCATGTCACACATCATCC 57.211 40.909 0.00 0.00 36.53 3.51
2253 9147 5.771469 TCAAAAACCATGTCACACATCATC 58.229 37.500 0.00 0.00 36.53 2.92
2254 9148 5.302568 ACTCAAAAACCATGTCACACATCAT 59.697 36.000 0.00 0.00 36.53 2.45
2255 9149 4.644234 ACTCAAAAACCATGTCACACATCA 59.356 37.500 0.00 0.00 36.53 3.07
2256 9150 5.186996 ACTCAAAAACCATGTCACACATC 57.813 39.130 0.00 0.00 36.53 3.06
2257 9151 4.261155 CGACTCAAAAACCATGTCACACAT 60.261 41.667 0.00 0.00 39.91 3.21
2258 9152 3.064682 CGACTCAAAAACCATGTCACACA 59.935 43.478 0.00 0.00 0.00 3.72
2259 9153 3.617669 CGACTCAAAAACCATGTCACAC 58.382 45.455 0.00 0.00 0.00 3.82
2260 9154 2.032799 GCGACTCAAAAACCATGTCACA 59.967 45.455 0.00 0.00 0.00 3.58
2261 9155 2.650608 GCGACTCAAAAACCATGTCAC 58.349 47.619 0.00 0.00 0.00 3.67
2262 9156 1.262950 CGCGACTCAAAAACCATGTCA 59.737 47.619 0.00 0.00 0.00 3.58
2263 9157 1.263217 ACGCGACTCAAAAACCATGTC 59.737 47.619 15.93 0.00 0.00 3.06
2264 9158 1.002900 CACGCGACTCAAAAACCATGT 60.003 47.619 15.93 0.00 0.00 3.21
2265 9159 1.262950 TCACGCGACTCAAAAACCATG 59.737 47.619 15.93 0.00 0.00 3.66
2266 9160 1.263217 GTCACGCGACTCAAAAACCAT 59.737 47.619 15.93 0.00 39.22 3.55
2267 9161 0.653636 GTCACGCGACTCAAAAACCA 59.346 50.000 15.93 0.00 39.22 3.67
2268 9162 3.432759 GTCACGCGACTCAAAAACC 57.567 52.632 15.93 0.00 39.22 3.27
2277 9171 0.372679 TCATCGACTAGTCACGCGAC 59.627 55.000 22.37 0.00 42.95 5.19
2278 9172 0.651031 CTCATCGACTAGTCACGCGA 59.349 55.000 22.37 14.47 37.17 5.87
2279 9173 0.374063 ACTCATCGACTAGTCACGCG 59.626 55.000 22.37 3.53 0.00 6.01
2280 9174 2.093972 GACTCATCGACTAGTCACGC 57.906 55.000 22.37 0.00 41.46 5.34
2304 9198 5.300752 ACTGAGTCATGAGTCGACATTTTT 58.699 37.500 22.50 0.00 35.77 1.94
2305 9199 4.887748 ACTGAGTCATGAGTCGACATTTT 58.112 39.130 22.50 0.00 35.77 1.82
2306 9200 4.489810 GACTGAGTCATGAGTCGACATTT 58.510 43.478 22.50 0.00 35.77 2.32
2307 9201 4.103365 GACTGAGTCATGAGTCGACATT 57.897 45.455 22.50 7.31 35.77 2.71
2308 9202 3.773860 GACTGAGTCATGAGTCGACAT 57.226 47.619 22.50 9.96 35.77 3.06
2313 9207 0.448197 TCGCGACTGAGTCATGAGTC 59.552 55.000 21.57 21.57 36.10 3.36
2314 9208 0.169230 GTCGCGACTGAGTCATGAGT 59.831 55.000 31.12 1.67 32.09 3.41
2315 9209 0.449786 AGTCGCGACTGAGTCATGAG 59.550 55.000 38.89 0.00 40.75 2.90
2316 9210 1.666189 CTAGTCGCGACTGAGTCATGA 59.334 52.381 43.41 24.61 42.52 3.07
2317 9211 1.398739 ACTAGTCGCGACTGAGTCATG 59.601 52.381 43.41 26.56 42.52 3.07
2318 9212 1.666700 GACTAGTCGCGACTGAGTCAT 59.333 52.381 38.70 26.74 42.52 3.06
2319 9213 1.077123 GACTAGTCGCGACTGAGTCA 58.923 55.000 38.70 28.10 42.52 3.41
2320 9214 0.025256 CGACTAGTCGCGACTGAGTC 59.975 60.000 43.41 39.27 46.50 3.36
2321 9215 2.079874 CGACTAGTCGCGACTGAGT 58.920 57.895 43.41 37.02 46.50 3.41
2322 9216 4.957363 CGACTAGTCGCGACTGAG 57.043 61.111 43.41 34.74 46.50 3.35
2339 9233 2.117941 AAAAGTCGAGCCGCAGTTGC 62.118 55.000 0.00 0.00 37.78 4.17
2340 9234 0.307760 AAAAAGTCGAGCCGCAGTTG 59.692 50.000 0.00 0.00 0.00 3.16
2341 9235 0.586802 GAAAAAGTCGAGCCGCAGTT 59.413 50.000 0.00 0.00 0.00 3.16
2342 9236 1.228657 GGAAAAAGTCGAGCCGCAGT 61.229 55.000 0.00 0.00 0.00 4.40
2343 9237 1.497722 GGAAAAAGTCGAGCCGCAG 59.502 57.895 0.00 0.00 0.00 5.18
2344 9238 2.314647 CGGAAAAAGTCGAGCCGCA 61.315 57.895 0.00 0.00 35.17 5.69
2345 9239 1.956620 CTCGGAAAAAGTCGAGCCGC 61.957 60.000 0.00 0.00 44.68 6.53
2346 9240 2.070861 CTCGGAAAAAGTCGAGCCG 58.929 57.895 0.00 0.00 44.68 5.52
2352 9246 1.991264 GGTAGCGACTCGGAAAAAGTC 59.009 52.381 0.00 0.00 39.82 3.01
2353 9247 1.337541 GGGTAGCGACTCGGAAAAAGT 60.338 52.381 0.00 0.00 0.00 2.66
2354 9248 1.356938 GGGTAGCGACTCGGAAAAAG 58.643 55.000 0.00 0.00 0.00 2.27
2355 9249 0.037046 GGGGTAGCGACTCGGAAAAA 60.037 55.000 0.00 0.00 0.00 1.94
2356 9250 1.186917 TGGGGTAGCGACTCGGAAAA 61.187 55.000 0.00 0.00 0.00 2.29
2357 9251 1.601419 CTGGGGTAGCGACTCGGAAA 61.601 60.000 0.00 0.00 0.00 3.13
2358 9252 2.036098 TGGGGTAGCGACTCGGAA 59.964 61.111 0.00 0.00 0.00 4.30
2359 9253 2.439701 CTGGGGTAGCGACTCGGA 60.440 66.667 0.00 0.00 0.00 4.55
2360 9254 2.050350 TTCTGGGGTAGCGACTCGG 61.050 63.158 0.00 0.00 0.00 4.63
2361 9255 1.139095 GTTCTGGGGTAGCGACTCG 59.861 63.158 0.00 0.00 0.00 4.18
2362 9256 0.606604 TTGTTCTGGGGTAGCGACTC 59.393 55.000 0.00 0.00 0.00 3.36
2363 9257 0.320697 GTTGTTCTGGGGTAGCGACT 59.679 55.000 0.00 0.00 0.00 4.18
2364 9258 0.320697 AGTTGTTCTGGGGTAGCGAC 59.679 55.000 0.00 0.00 0.00 5.19
2365 9259 0.606604 GAGTTGTTCTGGGGTAGCGA 59.393 55.000 0.00 0.00 0.00 4.93
2366 9260 0.320374 TGAGTTGTTCTGGGGTAGCG 59.680 55.000 0.00 0.00 0.00 4.26
2367 9261 2.789409 ATGAGTTGTTCTGGGGTAGC 57.211 50.000 0.00 0.00 0.00 3.58
2368 9262 4.712337 AGTCTATGAGTTGTTCTGGGGTAG 59.288 45.833 0.00 0.00 0.00 3.18
2369 9263 4.684724 AGTCTATGAGTTGTTCTGGGGTA 58.315 43.478 0.00 0.00 0.00 3.69
2370 9264 3.515901 GAGTCTATGAGTTGTTCTGGGGT 59.484 47.826 0.00 0.00 0.00 4.95
2371 9265 3.429547 CGAGTCTATGAGTTGTTCTGGGG 60.430 52.174 0.00 0.00 0.00 4.96
2372 9266 3.444034 TCGAGTCTATGAGTTGTTCTGGG 59.556 47.826 0.00 0.00 0.00 4.45
2373 9267 4.703645 TCGAGTCTATGAGTTGTTCTGG 57.296 45.455 0.00 0.00 0.00 3.86
2374 9268 6.128795 GGTTTTCGAGTCTATGAGTTGTTCTG 60.129 42.308 0.00 0.00 0.00 3.02
2375 9269 5.927115 GGTTTTCGAGTCTATGAGTTGTTCT 59.073 40.000 0.00 0.00 0.00 3.01
2376 9270 5.694910 TGGTTTTCGAGTCTATGAGTTGTTC 59.305 40.000 0.00 0.00 0.00 3.18
2377 9271 5.607477 TGGTTTTCGAGTCTATGAGTTGTT 58.393 37.500 0.00 0.00 0.00 2.83
2378 9272 5.209818 TGGTTTTCGAGTCTATGAGTTGT 57.790 39.130 0.00 0.00 0.00 3.32
2379 9273 5.869344 TCATGGTTTTCGAGTCTATGAGTTG 59.131 40.000 0.00 0.00 0.00 3.16
2380 9274 6.037786 TCATGGTTTTCGAGTCTATGAGTT 57.962 37.500 0.00 0.00 0.00 3.01
2381 9275 5.661056 TCATGGTTTTCGAGTCTATGAGT 57.339 39.130 0.00 0.00 0.00 3.41
2382 9276 6.019237 CACATCATGGTTTTCGAGTCTATGAG 60.019 42.308 14.02 10.32 33.89 2.90
2383 9277 5.812127 CACATCATGGTTTTCGAGTCTATGA 59.188 40.000 12.14 12.14 34.62 2.15
2384 9278 5.582269 ACACATCATGGTTTTCGAGTCTATG 59.418 40.000 0.00 0.00 0.00 2.23
2385 9279 5.582269 CACACATCATGGTTTTCGAGTCTAT 59.418 40.000 0.00 0.00 0.00 1.98
2386 9280 4.929211 CACACATCATGGTTTTCGAGTCTA 59.071 41.667 0.00 0.00 0.00 2.59
2387 9281 3.748048 CACACATCATGGTTTTCGAGTCT 59.252 43.478 0.00 0.00 0.00 3.24
2388 9282 3.745975 TCACACATCATGGTTTTCGAGTC 59.254 43.478 0.00 0.00 0.00 3.36
2389 9283 3.738982 TCACACATCATGGTTTTCGAGT 58.261 40.909 0.00 0.00 0.00 4.18
2390 9284 4.952262 ATCACACATCATGGTTTTCGAG 57.048 40.909 0.00 0.00 0.00 4.04
2391 9285 5.351189 CACTATCACACATCATGGTTTTCGA 59.649 40.000 0.00 0.00 0.00 3.71
2392 9286 5.122239 ACACTATCACACATCATGGTTTTCG 59.878 40.000 0.00 0.00 0.00 3.46
2393 9287 6.317088 CACACTATCACACATCATGGTTTTC 58.683 40.000 0.00 0.00 0.00 2.29
2394 9288 5.183713 CCACACTATCACACATCATGGTTTT 59.816 40.000 0.00 0.00 0.00 2.43
2395 9289 4.701651 CCACACTATCACACATCATGGTTT 59.298 41.667 0.00 0.00 0.00 3.27
2396 9290 4.264253 CCACACTATCACACATCATGGTT 58.736 43.478 0.00 0.00 0.00 3.67
2397 9291 3.370846 CCCACACTATCACACATCATGGT 60.371 47.826 0.00 0.00 0.00 3.55
2398 9292 3.208594 CCCACACTATCACACATCATGG 58.791 50.000 0.00 0.00 0.00 3.66
2399 9293 3.873361 GACCCACACTATCACACATCATG 59.127 47.826 0.00 0.00 0.00 3.07
2400 9294 3.776969 AGACCCACACTATCACACATCAT 59.223 43.478 0.00 0.00 0.00 2.45
2401 9295 3.055891 CAGACCCACACTATCACACATCA 60.056 47.826 0.00 0.00 0.00 3.07
2402 9296 3.055819 ACAGACCCACACTATCACACATC 60.056 47.826 0.00 0.00 0.00 3.06
2403 9297 2.906389 ACAGACCCACACTATCACACAT 59.094 45.455 0.00 0.00 0.00 3.21
2404 9298 2.325484 ACAGACCCACACTATCACACA 58.675 47.619 0.00 0.00 0.00 3.72
2405 9299 3.402628 AACAGACCCACACTATCACAC 57.597 47.619 0.00 0.00 0.00 3.82
2406 9300 5.512404 CCTTTAACAGACCCACACTATCACA 60.512 44.000 0.00 0.00 0.00 3.58
2407 9301 4.935808 CCTTTAACAGACCCACACTATCAC 59.064 45.833 0.00 0.00 0.00 3.06
2408 9302 4.841813 TCCTTTAACAGACCCACACTATCA 59.158 41.667 0.00 0.00 0.00 2.15
2409 9303 5.416271 TCCTTTAACAGACCCACACTATC 57.584 43.478 0.00 0.00 0.00 2.08
2410 9304 4.225267 CCTCCTTTAACAGACCCACACTAT 59.775 45.833 0.00 0.00 0.00 2.12
2411 9305 3.581332 CCTCCTTTAACAGACCCACACTA 59.419 47.826 0.00 0.00 0.00 2.74
2412 9306 2.372172 CCTCCTTTAACAGACCCACACT 59.628 50.000 0.00 0.00 0.00 3.55
2413 9307 2.370849 TCCTCCTTTAACAGACCCACAC 59.629 50.000 0.00 0.00 0.00 3.82
2425 9319 6.315714 CATCTACACCTATCCTCCTCCTTTA 58.684 44.000 0.00 0.00 0.00 1.85
2426 9320 4.901785 TCTACACCTATCCTCCTCCTTT 57.098 45.455 0.00 0.00 0.00 3.11
2453 9370 0.461693 CTTAGCCAGGTCTGCTGAGC 60.462 60.000 14.26 14.26 39.91 4.26
2454 9371 0.901124 ACTTAGCCAGGTCTGCTGAG 59.099 55.000 2.91 2.91 45.17 3.35
2455 9372 2.231716 TACTTAGCCAGGTCTGCTGA 57.768 50.000 0.00 0.00 39.91 4.26
2456 9373 3.550437 AATACTTAGCCAGGTCTGCTG 57.450 47.619 0.00 0.00 39.91 4.41
2457 9374 3.878778 CAAATACTTAGCCAGGTCTGCT 58.121 45.455 0.00 0.00 42.81 4.24
2458 9375 2.356069 GCAAATACTTAGCCAGGTCTGC 59.644 50.000 0.00 0.00 0.00 4.26
2467 9384 5.598416 AATTTCAGGGGCAAATACTTAGC 57.402 39.130 0.00 0.00 0.00 3.09
2468 9385 6.239036 GGCTAATTTCAGGGGCAAATACTTAG 60.239 42.308 0.00 0.00 0.00 2.18
2469 9386 5.596772 GGCTAATTTCAGGGGCAAATACTTA 59.403 40.000 0.00 0.00 0.00 2.24
2470 9387 4.405680 GGCTAATTTCAGGGGCAAATACTT 59.594 41.667 0.00 0.00 0.00 2.24
2471 9388 3.960755 GGCTAATTTCAGGGGCAAATACT 59.039 43.478 0.00 0.00 0.00 2.12
2472 9389 3.704061 TGGCTAATTTCAGGGGCAAATAC 59.296 43.478 0.00 0.00 0.00 1.89
2473 9390 3.987745 TGGCTAATTTCAGGGGCAAATA 58.012 40.909 0.00 0.00 0.00 1.40
2474 9391 2.831565 TGGCTAATTTCAGGGGCAAAT 58.168 42.857 0.00 0.00 0.00 2.32
2475 9392 2.317371 TGGCTAATTTCAGGGGCAAA 57.683 45.000 0.00 0.00 0.00 3.68
2476 9393 2.178580 CTTGGCTAATTTCAGGGGCAA 58.821 47.619 0.00 0.00 40.84 4.52
2477 9394 1.851304 CTTGGCTAATTTCAGGGGCA 58.149 50.000 0.00 0.00 0.00 5.36
2478 9395 0.461548 GCTTGGCTAATTTCAGGGGC 59.538 55.000 0.00 0.00 0.00 5.80
2479 9396 2.149973 AGCTTGGCTAATTTCAGGGG 57.850 50.000 0.00 0.00 36.99 4.79
2520 9437 3.128589 TCAAAGACACTTCAACAAGCCAC 59.871 43.478 0.00 0.00 32.09 5.01
2546 9463 4.871933 ACCAGCCAAATAAAAACTCTGG 57.128 40.909 0.00 0.00 43.73 3.86
2572 9489 7.928167 CACTGTCCTAGTTGAAATGCTATATCA 59.072 37.037 0.00 0.00 37.60 2.15
2573 9490 8.144478 TCACTGTCCTAGTTGAAATGCTATATC 58.856 37.037 0.00 0.00 37.60 1.63
2591 9508 3.449018 ACAGACCATACTCATCACTGTCC 59.551 47.826 0.00 0.00 32.84 4.02
2592 9509 4.727507 ACAGACCATACTCATCACTGTC 57.272 45.455 0.00 0.00 32.84 3.51
2593 9510 4.098654 GCTACAGACCATACTCATCACTGT 59.901 45.833 0.00 0.00 39.74 3.55
2594 9511 4.615949 GCTACAGACCATACTCATCACTG 58.384 47.826 0.00 0.00 0.00 3.66
2596 9513 3.315470 TCGCTACAGACCATACTCATCAC 59.685 47.826 0.00 0.00 0.00 3.06
2602 9544 2.952978 CCTCTTCGCTACAGACCATACT 59.047 50.000 0.00 0.00 0.00 2.12
2616 9558 2.882137 GTGATCTAGGGTCTCCTCTTCG 59.118 54.545 0.00 0.00 43.66 3.79
2624 9566 6.500751 TGTAAGAAAAAGGTGATCTAGGGTCT 59.499 38.462 0.00 0.00 0.00 3.85
2677 9624 9.806203 CTTCAAAGCATAATTAATCACATTCCA 57.194 29.630 0.00 0.00 0.00 3.53
2709 9656 2.047061 AGAACTGTGGGTCTAGTTGCA 58.953 47.619 0.00 0.00 37.27 4.08
2710 9657 2.841442 AGAACTGTGGGTCTAGTTGC 57.159 50.000 0.00 0.00 37.27 4.17
2719 9666 1.002087 ACGGAGCTAAAGAACTGTGGG 59.998 52.381 0.00 0.00 0.00 4.61
2749 9696 8.512138 AGTTACACATCTTACCATTAAAACAGC 58.488 33.333 0.00 0.00 0.00 4.40
2757 9704 6.598064 GCCACTAAGTTACACATCTTACCATT 59.402 38.462 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.