Multiple sequence alignment - TraesCS4B01G039100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G039100 chr4B 100.000 3569 0 0 1 3569 27903761 27907329 0.000000e+00 6591
1 TraesCS4B01G039100 chr4B 99.683 946 3 0 2624 3569 27928900 27927955 0.000000e+00 1731
2 TraesCS4B01G039100 chr4B 83.283 329 48 5 3 325 27762451 27762778 2.690000e-76 296
3 TraesCS4B01G039100 chr4D 92.461 1963 91 26 671 2619 16150219 16152138 0.000000e+00 2752
4 TraesCS4B01G039100 chr4D 84.574 376 43 8 1 372 16148453 16148817 3.390000e-95 359
5 TraesCS4B01G039100 chr4D 86.520 319 37 5 393 708 16149907 16150222 2.640000e-91 346
6 TraesCS4B01G039100 chr4A 94.831 1122 49 5 1500 2620 584351515 584350402 0.000000e+00 1742
7 TraesCS4B01G039100 chr4A 92.053 755 41 12 719 1469 584352252 584351513 0.000000e+00 1044
8 TraesCS4B01G039100 chr4A 94.297 263 15 0 1 263 584353696 584353434 1.540000e-108 403
9 TraesCS4B01G039100 chr4A 93.130 131 9 0 267 397 584379499 584379369 3.640000e-45 193
10 TraesCS4B01G039100 chr3A 98.942 945 10 0 2625 3569 142685992 142685048 0.000000e+00 1690
11 TraesCS4B01G039100 chr3A 98.730 945 12 0 2625 3569 393888413 393889357 0.000000e+00 1679
12 TraesCS4B01G039100 chrUn 98.624 945 13 0 2625 3569 425430844 425429900 0.000000e+00 1674
13 TraesCS4B01G039100 chr6B 98.624 945 13 0 2625 3569 60061498 60060554 0.000000e+00 1674
14 TraesCS4B01G039100 chr6A 98.624 945 13 0 2625 3569 60616309 60615365 0.000000e+00 1674
15 TraesCS4B01G039100 chr5B 98.624 945 13 0 2625 3569 551747987 551748931 0.000000e+00 1674
16 TraesCS4B01G039100 chr2A 98.624 945 13 0 2625 3569 749794054 749794998 0.000000e+00 1674
17 TraesCS4B01G039100 chr1B 98.418 948 15 0 2622 3569 245237206 245238153 0.000000e+00 1668


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G039100 chr4B 27903761 27907329 3568 False 6591.000000 6591 100.000000 1 3569 1 chr4B.!!$F2 3568
1 TraesCS4B01G039100 chr4B 27927955 27928900 945 True 1731.000000 1731 99.683000 2624 3569 1 chr4B.!!$R1 945
2 TraesCS4B01G039100 chr4D 16148453 16152138 3685 False 1152.333333 2752 87.851667 1 2619 3 chr4D.!!$F1 2618
3 TraesCS4B01G039100 chr4A 584350402 584353696 3294 True 1063.000000 1742 93.727000 1 2620 3 chr4A.!!$R2 2619
4 TraesCS4B01G039100 chr3A 142685048 142685992 944 True 1690.000000 1690 98.942000 2625 3569 1 chr3A.!!$R1 944
5 TraesCS4B01G039100 chr3A 393888413 393889357 944 False 1679.000000 1679 98.730000 2625 3569 1 chr3A.!!$F1 944
6 TraesCS4B01G039100 chrUn 425429900 425430844 944 True 1674.000000 1674 98.624000 2625 3569 1 chrUn.!!$R1 944
7 TraesCS4B01G039100 chr6B 60060554 60061498 944 True 1674.000000 1674 98.624000 2625 3569 1 chr6B.!!$R1 944
8 TraesCS4B01G039100 chr6A 60615365 60616309 944 True 1674.000000 1674 98.624000 2625 3569 1 chr6A.!!$R1 944
9 TraesCS4B01G039100 chr5B 551747987 551748931 944 False 1674.000000 1674 98.624000 2625 3569 1 chr5B.!!$F1 944
10 TraesCS4B01G039100 chr2A 749794054 749794998 944 False 1674.000000 1674 98.624000 2625 3569 1 chr2A.!!$F1 944
11 TraesCS4B01G039100 chr1B 245237206 245238153 947 False 1668.000000 1668 98.418000 2622 3569 1 chr1B.!!$F1 947

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
335 347 0.174845 CGCATAAGTTGGAGACCCGA 59.825 55.0 0.00 0.0 34.29 5.14 F
1619 3553 0.465460 ACAGCATCGTTGTTGTGGGT 60.465 50.0 14.19 0.0 44.47 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1951 3885 0.107752 TATGTTGATGCAGCGGCTCA 60.108 50.000 10.92 8.51 41.91 4.26 R
2621 4565 1.000955 AGGCTTAGAACCACGACACTG 59.999 52.381 0.00 0.00 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 5.248870 TCTTGTTTTCCTTTTGTGCTCTC 57.751 39.130 0.00 0.00 0.00 3.20
43 44 4.033009 TGTGCTCTCTAGGATGGATGAAA 58.967 43.478 0.00 0.00 0.00 2.69
72 73 4.026052 TGAAGACATGTGATAGGCTCTGA 58.974 43.478 1.15 0.00 0.00 3.27
170 182 4.082949 TGGTATAGCATAGGTCGATCAACG 60.083 45.833 0.00 0.00 44.09 4.10
222 234 1.417890 CAACATTATCCTCCTCGCCCT 59.582 52.381 0.00 0.00 0.00 5.19
254 266 6.684555 GTCTACATTGTCGAATTCTTCAATGC 59.315 38.462 30.18 19.98 46.00 3.56
255 267 5.375417 ACATTGTCGAATTCTTCAATGCA 57.625 34.783 30.18 0.00 46.00 3.96
263 275 4.510571 GAATTCTTCAATGCATGCCCTTT 58.489 39.130 16.68 3.38 0.00 3.11
264 276 4.563140 ATTCTTCAATGCATGCCCTTTT 57.437 36.364 16.68 0.64 0.00 2.27
265 277 3.322211 TCTTCAATGCATGCCCTTTTG 57.678 42.857 16.68 13.38 0.00 2.44
269 281 2.633967 TCAATGCATGCCCTTTTGTCTT 59.366 40.909 16.68 0.00 0.00 3.01
314 326 7.928307 AATGAATGTTAAGTGTGAGCTACAT 57.072 32.000 0.00 0.00 42.24 2.29
315 327 7.928307 ATGAATGTTAAGTGTGAGCTACATT 57.072 32.000 6.88 6.88 42.24 2.71
316 328 7.364522 TGAATGTTAAGTGTGAGCTACATTC 57.635 36.000 20.36 20.36 45.91 2.67
335 347 0.174845 CGCATAAGTTGGAGACCCGA 59.825 55.000 0.00 0.00 34.29 5.14
340 352 0.969894 AAGTTGGAGACCCGAGTGAG 59.030 55.000 0.00 0.00 34.29 3.51
349 361 0.957395 ACCCGAGTGAGCATTGCTTG 60.957 55.000 13.35 1.20 39.88 4.01
365 377 1.336240 GCTTGCTTCCATGTGGTTCAC 60.336 52.381 0.00 0.00 36.34 3.18
383 395 4.395959 TCACAAATAGTATCGGACACCC 57.604 45.455 0.00 0.00 0.00 4.61
384 396 3.133362 TCACAAATAGTATCGGACACCCC 59.867 47.826 0.00 0.00 0.00 4.95
395 1482 1.335132 GGACACCCCTAGGCATTCGA 61.335 60.000 2.05 0.00 36.11 3.71
416 1503 1.372872 GGGTTCACAATGGTTGCGC 60.373 57.895 0.00 0.00 0.00 6.09
485 1573 1.741770 GGCAGAATTCAGCCGACGT 60.742 57.895 24.06 0.00 38.75 4.34
496 1584 2.738480 CCGACGTGAAGGTGGGAA 59.262 61.111 0.00 0.00 37.96 3.97
497 1585 1.295423 CCGACGTGAAGGTGGGAAT 59.705 57.895 0.00 0.00 37.96 3.01
501 1589 1.378514 CGTGAAGGTGGGAATGGGG 60.379 63.158 0.00 0.00 0.00 4.96
502 1590 1.682344 GTGAAGGTGGGAATGGGGC 60.682 63.158 0.00 0.00 0.00 5.80
504 1592 4.060667 AAGGTGGGAATGGGGCGG 62.061 66.667 0.00 0.00 0.00 6.13
574 1662 4.546829 TTGTTAGCGTGTTAAGGAGGAT 57.453 40.909 0.00 0.00 0.00 3.24
599 1687 9.646522 ATCTAAATATTGTTCTGGGTAGCAAAT 57.353 29.630 0.00 0.00 0.00 2.32
786 2707 2.178912 TGAACGTGACTTCAATCCCC 57.821 50.000 0.00 0.00 0.00 4.81
793 2714 3.375299 CGTGACTTCAATCCCCTCAATTC 59.625 47.826 0.00 0.00 0.00 2.17
798 2719 2.722094 TCAATCCCCTCAATTCCGTTG 58.278 47.619 0.00 0.00 39.25 4.10
800 2721 2.420058 ATCCCCTCAATTCCGTTGTC 57.580 50.000 0.00 0.00 38.95 3.18
829 2751 1.971167 GGAGCACGGCACCAATCAA 60.971 57.895 7.31 0.00 39.08 2.57
830 2752 1.210155 GAGCACGGCACCAATCAAC 59.790 57.895 0.00 0.00 0.00 3.18
831 2753 2.200170 GAGCACGGCACCAATCAACC 62.200 60.000 0.00 0.00 0.00 3.77
1290 3224 2.251642 ACCGCTTTCACGTCCTTGC 61.252 57.895 0.00 0.00 0.00 4.01
1296 3230 1.128692 CTTTCACGTCCTTGCCGATTC 59.871 52.381 0.00 0.00 0.00 2.52
1306 3240 2.939103 CCTTGCCGATTCTTCTTACCTG 59.061 50.000 0.00 0.00 0.00 4.00
1341 3275 7.140705 CGATGGTGCATGATTAATTGTTACAT 58.859 34.615 0.00 0.00 0.00 2.29
1347 3281 9.438291 GTGCATGATTAATTGTTACATACACTC 57.562 33.333 0.00 0.00 36.21 3.51
1357 3291 7.821595 TTGTTACATACACTCGTTTATCTGG 57.178 36.000 0.00 0.00 36.21 3.86
1388 3322 7.993821 TGAGAAATTAGCTTCACTAGATTCG 57.006 36.000 0.00 0.00 34.71 3.34
1523 3457 3.067461 TCAAACATTTTGGAACGGAGGTG 59.933 43.478 0.00 0.00 0.00 4.00
1526 3460 1.960689 CATTTTGGAACGGAGGTGGTT 59.039 47.619 0.00 0.00 0.00 3.67
1572 3506 6.530913 AACAACACATATATGTCTGCGATC 57.469 37.500 15.60 0.00 39.39 3.69
1597 3531 4.440940 GGCATGATTCAGCATCACAATGAA 60.441 41.667 0.00 0.00 45.12 2.57
1610 3544 5.878332 TCACAATGAAATACAGCATCGTT 57.122 34.783 0.00 0.00 0.00 3.85
1619 3553 0.465460 ACAGCATCGTTGTTGTGGGT 60.465 50.000 14.19 0.00 44.47 4.51
1642 3576 4.474226 GCTTTGAGCCATATCCGTTTAG 57.526 45.455 0.00 0.00 34.48 1.85
1643 3577 3.251004 GCTTTGAGCCATATCCGTTTAGG 59.749 47.826 0.00 0.00 36.88 2.69
1732 3666 5.522460 TGTTTACAGTGTGACAAGAGCTAAC 59.478 40.000 5.88 0.00 0.00 2.34
1847 3781 1.656652 ACGATTCTTCTTCATGCCGG 58.343 50.000 0.00 0.00 0.00 6.13
1861 3795 0.537143 TGCCGGCTGACATCTTTTGT 60.537 50.000 29.70 0.00 42.79 2.83
2019 3953 4.524328 AGGTTCATCCTTGCTAAAACCTTG 59.476 41.667 0.00 0.00 45.67 3.61
2116 4051 8.506437 TGCGATCATTATGGATTTAACATCTTC 58.494 33.333 0.00 0.00 0.00 2.87
2293 4228 6.823182 TGATGGTTAATGAAGATGACATCGTT 59.177 34.615 9.77 5.04 37.02 3.85
2353 4288 5.945784 TGAAGATCCAAAGTCCAAGGTATTG 59.054 40.000 0.00 0.00 36.09 1.90
2387 4322 5.188555 AGAGTTGATACATCCTCTTCAGCAA 59.811 40.000 0.00 0.00 30.23 3.91
2394 4329 1.730501 TCCTCTTCAGCAATGCTTCG 58.269 50.000 4.36 0.00 36.40 3.79
2398 4333 1.800586 TCTTCAGCAATGCTTCGTCAC 59.199 47.619 4.36 0.00 36.40 3.67
2482 4417 1.035932 CCTCCATGCTTCTGCCCTTG 61.036 60.000 0.00 0.00 38.71 3.61
2563 4507 2.371841 AGTGAGACAAGCACATGGGTTA 59.628 45.455 0.00 0.00 38.70 2.85
2620 4564 2.568623 AGTTCACCACAATGGAGACC 57.431 50.000 0.84 0.00 40.96 3.85
2621 4565 1.073923 AGTTCACCACAATGGAGACCC 59.926 52.381 0.84 0.00 40.96 4.46
3072 5016 1.111116 TCGTTGGTCGACTGGAAGGT 61.111 55.000 16.46 0.00 44.01 3.50
3551 5495 2.488087 GATTAGATCGACCGGGCCCG 62.488 65.000 37.99 37.99 39.44 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 9.664332 GAGCCTATCACATGTCTTCAATAATAT 57.336 33.333 0.00 0.00 0.00 1.28
56 57 3.133542 TGGAGTTCAGAGCCTATCACATG 59.866 47.826 0.00 0.00 0.00 3.21
66 67 3.409026 TCTTCCTTTGGAGTTCAGAGC 57.591 47.619 0.00 0.00 31.21 4.09
72 73 2.560105 GCATGCTTCTTCCTTTGGAGTT 59.440 45.455 11.37 0.00 31.21 3.01
170 182 9.988815 AGGTGAGATGTCAGTGATATTTAATAC 57.011 33.333 3.67 0.06 31.53 1.89
314 326 1.404986 CGGGTCTCCAACTTATGCGAA 60.405 52.381 0.00 0.00 0.00 4.70
315 327 0.174845 CGGGTCTCCAACTTATGCGA 59.825 55.000 0.00 0.00 0.00 5.10
316 328 0.174845 TCGGGTCTCCAACTTATGCG 59.825 55.000 0.00 0.00 0.00 4.73
340 352 2.005065 CCACATGGAAGCAAGCAATGC 61.005 52.381 0.00 0.00 46.93 3.56
349 361 3.665745 ATTTGTGAACCACATGGAAGC 57.334 42.857 4.53 0.00 44.16 3.86
365 377 4.021368 CCTAGGGGTGTCCGATACTATTTG 60.021 50.000 0.00 0.00 41.52 2.32
372 384 0.190069 ATGCCTAGGGGTGTCCGATA 59.810 55.000 11.72 0.00 41.52 2.92
373 385 0.694444 AATGCCTAGGGGTGTCCGAT 60.694 55.000 11.72 0.00 41.52 4.18
374 386 1.306654 AATGCCTAGGGGTGTCCGA 60.307 57.895 11.72 0.00 41.52 4.55
375 387 1.146263 GAATGCCTAGGGGTGTCCG 59.854 63.158 11.72 0.00 41.52 4.79
376 388 1.146263 CGAATGCCTAGGGGTGTCC 59.854 63.158 11.72 0.00 34.45 4.02
377 389 0.179081 GTCGAATGCCTAGGGGTGTC 60.179 60.000 11.72 0.00 34.45 3.67
383 395 0.541863 AACCCTGTCGAATGCCTAGG 59.458 55.000 3.67 3.67 0.00 3.02
384 396 1.207089 TGAACCCTGTCGAATGCCTAG 59.793 52.381 0.00 0.00 0.00 3.02
395 1482 1.039856 GCAACCATTGTGAACCCTGT 58.960 50.000 0.00 0.00 0.00 4.00
434 1521 2.202932 CCCCAACGCCTCATCTCG 60.203 66.667 0.00 0.00 0.00 4.04
436 1523 2.606587 AAGCCCCAACGCCTCATCT 61.607 57.895 0.00 0.00 0.00 2.90
470 1558 1.673033 CCTTCACGTCGGCTGAATTCT 60.673 52.381 7.05 0.00 0.00 2.40
471 1559 0.721718 CCTTCACGTCGGCTGAATTC 59.278 55.000 0.00 0.00 0.00 2.17
472 1560 0.034896 ACCTTCACGTCGGCTGAATT 59.965 50.000 0.00 0.00 0.00 2.17
474 1562 1.300620 CACCTTCACGTCGGCTGAA 60.301 57.895 0.00 0.00 0.00 3.02
485 1573 2.770130 GCCCCATTCCCACCTTCA 59.230 61.111 0.00 0.00 0.00 3.02
502 1590 4.444024 CACCATGTGAACGCGCCG 62.444 66.667 5.73 0.00 35.23 6.46
504 1592 3.353836 ACCACCATGTGAACGCGC 61.354 61.111 5.73 0.00 35.23 6.86
505 1593 1.958715 TCACCACCATGTGAACGCG 60.959 57.895 3.53 3.53 42.06 6.01
517 1605 0.179163 GCGCCAAGCTTAATCACCAC 60.179 55.000 0.00 0.00 44.04 4.16
518 1606 2.179764 GCGCCAAGCTTAATCACCA 58.820 52.632 0.00 0.00 44.04 4.17
556 1644 6.534475 TTTAGATCCTCCTTAACACGCTAA 57.466 37.500 0.00 0.00 0.00 3.09
574 1662 9.474313 AATTTGCTACCCAGAACAATATTTAGA 57.526 29.630 0.00 0.00 0.00 2.10
668 1792 9.811995 GACTTCCAAAACCTATGTAAAAACTTT 57.188 29.630 0.00 0.00 0.00 2.66
714 2133 1.733399 GTTGACTCCGTCGTGCCTC 60.733 63.158 0.00 0.00 34.95 4.70
744 2665 1.858910 TGGGCCCCACTGATAAATCAT 59.141 47.619 22.27 0.00 36.02 2.45
766 2687 2.305927 AGGGGATTGAAGTCACGTTCAT 59.694 45.455 0.00 0.00 36.34 2.57
786 2707 2.350522 CAGGAGGACAACGGAATTGAG 58.649 52.381 0.00 0.00 41.23 3.02
793 2714 0.889186 CCAAACCAGGAGGACAACGG 60.889 60.000 0.00 0.00 38.69 4.44
826 2748 0.037590 CTCGATTGGGGGTTGGTTGA 59.962 55.000 0.00 0.00 0.00 3.18
829 2751 2.355115 GCTCGATTGGGGGTTGGT 59.645 61.111 0.00 0.00 0.00 3.67
830 2752 2.046285 GTGCTCGATTGGGGGTTGG 61.046 63.158 0.00 0.00 0.00 3.77
831 2753 2.398554 CGTGCTCGATTGGGGGTTG 61.399 63.158 1.00 0.00 39.71 3.77
1265 3199 4.025401 GTGAAAGCGGTGGTGCGG 62.025 66.667 0.00 0.00 40.67 5.69
1290 3224 4.435651 GCGAAAACAGGTAAGAAGAATCGG 60.436 45.833 0.00 0.00 0.00 4.18
1296 3230 2.096417 CGTGGCGAAAACAGGTAAGAAG 60.096 50.000 0.00 0.00 0.00 2.85
1306 3240 1.442017 GCACCATCGTGGCGAAAAC 60.442 57.895 4.23 0.00 42.67 2.43
1341 3275 7.604549 TCATTGTAACCAGATAAACGAGTGTA 58.395 34.615 0.00 0.00 0.00 2.90
1467 3401 9.059260 GGTTTGTCCTAAGTCAAACTTATACAA 57.941 33.333 16.44 16.20 45.51 2.41
1469 3403 8.843885 AGGTTTGTCCTAAGTCAAACTTATAC 57.156 34.615 16.44 5.24 45.51 1.47
1494 3428 5.278266 CCGTTCCAAAATGTTTGAAGCTCTA 60.278 40.000 2.30 0.00 0.00 2.43
1498 3432 3.712187 TCCGTTCCAAAATGTTTGAAGC 58.288 40.909 2.30 0.00 0.00 3.86
1526 3460 2.335316 AACAACGAAACTAGGGTGCA 57.665 45.000 0.00 0.00 0.00 4.57
1572 3506 0.309922 GTGATGCTGAATCATGCCGG 59.690 55.000 0.76 0.00 46.90 6.13
1597 3531 2.487762 CCCACAACAACGATGCTGTATT 59.512 45.455 1.13 0.00 33.69 1.89
1610 3544 1.391157 GCTCAAAGCCACCCACAACA 61.391 55.000 0.00 0.00 34.48 3.33
1638 3572 5.925509 AGAAGTAACTTCACTGCACCTAAA 58.074 37.500 0.00 0.00 42.37 1.85
1639 3573 5.546621 AGAAGTAACTTCACTGCACCTAA 57.453 39.130 0.00 0.00 42.37 2.69
1640 3574 6.659745 TTAGAAGTAACTTCACTGCACCTA 57.340 37.500 0.00 0.00 42.37 3.08
1641 3575 5.542779 CTTAGAAGTAACTTCACTGCACCT 58.457 41.667 0.00 0.00 42.37 4.00
1642 3576 4.152580 GCTTAGAAGTAACTTCACTGCACC 59.847 45.833 0.00 0.00 42.37 5.01
1643 3577 4.750098 TGCTTAGAAGTAACTTCACTGCAC 59.250 41.667 0.00 0.00 42.37 4.57
1684 3618 9.520515 ACATAATATATCCCAACACCATCTTTC 57.479 33.333 0.00 0.00 0.00 2.62
1708 3642 4.137116 AGCTCTTGTCACACTGTAAACA 57.863 40.909 0.00 0.00 0.00 2.83
1861 3795 2.225467 TGCACCACAAAATCACATCGA 58.775 42.857 0.00 0.00 0.00 3.59
1897 3831 3.043635 GCATTGTTGACTGATGCTACG 57.956 47.619 12.53 0.00 42.12 3.51
1951 3885 0.107752 TATGTTGATGCAGCGGCTCA 60.108 50.000 10.92 8.51 41.91 4.26
2019 3953 4.676924 GCATAGTTCAGCAACAAACTTCAC 59.323 41.667 0.00 0.00 37.02 3.18
2116 4051 6.991938 TGGTTTGATTCCAATAGAAAACAGG 58.008 36.000 0.00 0.00 38.21 4.00
2129 4064 2.224769 TGTCCACCTCTGGTTTGATTCC 60.225 50.000 0.00 0.00 38.90 3.01
2293 4228 4.142403 GCAACAAAGGTAGCAATAGCATCA 60.142 41.667 0.00 0.00 45.49 3.07
2387 4322 3.402628 AACAGTTAGGTGACGAAGCAT 57.597 42.857 0.00 0.00 0.00 3.79
2522 4466 5.686841 TCACTGTTTGAAAGCAATGATTTCG 59.313 36.000 17.49 6.83 40.28 3.46
2620 4564 1.429463 GCTTAGAACCACGACACTGG 58.571 55.000 0.00 0.00 37.33 4.00
2621 4565 1.000955 AGGCTTAGAACCACGACACTG 59.999 52.381 0.00 0.00 0.00 3.66
2622 4566 1.000955 CAGGCTTAGAACCACGACACT 59.999 52.381 0.00 0.00 0.00 3.55
3072 5016 4.338795 AGGACATCCTTAGAAGAGGTCA 57.661 45.455 7.72 0.00 46.09 4.02
3551 5495 2.265739 TCCGAGTGGCTGACATGC 59.734 61.111 0.00 0.00 34.14 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.