Multiple sequence alignment - TraesCS4B01G039000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G039000 chr4B 100.000 2846 0 0 1 2846 27900506 27903351 0.000000e+00 5256.0
1 TraesCS4B01G039000 chr4B 85.350 314 37 4 2533 2838 131168130 131168442 1.650000e-82 316.0
2 TraesCS4B01G039000 chr4B 95.122 164 7 1 630 793 620028415 620028253 1.010000e-64 257.0
3 TraesCS4B01G039000 chr4D 90.045 1768 86 38 796 2519 16146293 16148014 0.000000e+00 2207.0
4 TraesCS4B01G039000 chr4D 80.108 553 73 17 1662 2208 16142559 16142038 7.440000e-101 377.0
5 TraesCS4B01G039000 chr4A 88.710 1674 84 57 796 2426 584389230 584387619 0.000000e+00 1947.0
6 TraesCS4B01G039000 chr4A 84.511 1033 76 32 1511 2519 584355072 584354100 0.000000e+00 944.0
7 TraesCS4B01G039000 chr4A 88.415 164 18 1 630 793 583062785 583062947 2.240000e-46 196.0
8 TraesCS4B01G039000 chr4A 89.313 131 11 1 1662 1789 584404467 584404597 8.160000e-36 161.0
9 TraesCS4B01G039000 chr4A 87.500 104 11 2 2414 2517 584380507 584380406 4.980000e-23 119.0
10 TraesCS4B01G039000 chr4A 86.667 75 5 4 555 628 584401135 584401065 8.450000e-11 78.7
11 TraesCS4B01G039000 chr4A 97.436 39 1 0 1462 1500 584355106 584355068 1.830000e-07 67.6
12 TraesCS4B01G039000 chrUn 91.486 552 30 5 1 536 3564600 3564050 0.000000e+00 743.0
13 TraesCS4B01G039000 chrUn 91.304 552 31 2 1 536 367398847 367398297 0.000000e+00 737.0
14 TraesCS4B01G039000 chrUn 93.313 329 21 1 1 329 223380725 223381052 4.260000e-133 484.0
15 TraesCS4B01G039000 chrUn 82.927 328 47 6 2519 2844 41161083 41160763 1.290000e-73 287.0
16 TraesCS4B01G039000 chr1B 93.313 329 21 1 1 329 52743697 52744024 4.260000e-133 484.0
17 TraesCS4B01G039000 chr1B 88.358 335 33 5 2513 2844 688398376 688398045 5.710000e-107 398.0
18 TraesCS4B01G039000 chr1B 86.687 323 40 3 2516 2837 681800909 681801229 3.490000e-94 355.0
19 TraesCS4B01G039000 chr1B 84.211 323 40 9 2524 2840 52553959 52554276 1.280000e-78 303.0
20 TraesCS4B01G039000 chr1B 84.211 323 40 9 2524 2840 52638458 52638775 1.280000e-78 303.0
21 TraesCS4B01G039000 chr5A 86.810 326 41 2 2519 2844 702862890 702863213 2.080000e-96 363.0
22 TraesCS4B01G039000 chr7B 98.788 165 2 0 629 793 59742157 59741993 7.710000e-76 294.0
23 TraesCS4B01G039000 chr6A 83.438 320 40 8 2519 2835 517898588 517898279 4.640000e-73 285.0
24 TraesCS4B01G039000 chr6A 90.184 163 15 1 631 793 525612367 525612206 7.990000e-51 211.0
25 TraesCS4B01G039000 chr6D 82.371 329 50 7 2519 2844 455630647 455630324 2.160000e-71 279.0
26 TraesCS4B01G039000 chr2A 96.552 145 5 0 649 793 729334416 729334560 1.020000e-59 241.0
27 TraesCS4B01G039000 chr2A 90.244 164 15 1 630 793 502798546 502798708 2.220000e-51 213.0
28 TraesCS4B01G039000 chr5D 92.216 167 12 1 628 793 434539665 434539499 4.740000e-58 235.0
29 TraesCS4B01G039000 chr7A 90.741 162 15 0 632 793 397774170 397774331 1.720000e-52 217.0
30 TraesCS4B01G039000 chr7A 90.184 163 15 1 631 793 453840338 453840177 7.990000e-51 211.0
31 TraesCS4B01G039000 chr5B 83.019 106 12 4 1 103 98516480 98516582 1.090000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G039000 chr4B 27900506 27903351 2845 False 5256.0 5256 100.0000 1 2846 1 chr4B.!!$F1 2845
1 TraesCS4B01G039000 chr4D 16146293 16148014 1721 False 2207.0 2207 90.0450 796 2519 1 chr4D.!!$F1 1723
2 TraesCS4B01G039000 chr4D 16142038 16142559 521 True 377.0 377 80.1080 1662 2208 1 chr4D.!!$R1 546
3 TraesCS4B01G039000 chr4A 584387619 584389230 1611 True 1947.0 1947 88.7100 796 2426 1 chr4A.!!$R2 1630
4 TraesCS4B01G039000 chr4A 584354100 584355106 1006 True 505.8 944 90.9735 1462 2519 2 chr4A.!!$R4 1057
5 TraesCS4B01G039000 chrUn 3564050 3564600 550 True 743.0 743 91.4860 1 536 1 chrUn.!!$R1 535
6 TraesCS4B01G039000 chrUn 367398297 367398847 550 True 737.0 737 91.3040 1 536 1 chrUn.!!$R3 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
709 726 0.107848 CTGGATCGTGGGGGTGTAAC 60.108 60.0 0.0 0.0 0.0 2.5 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2582 2674 0.037882 ATGCAGAGGTCGAGTGTGTG 60.038 55.0 0.0 0.0 0.0 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 1.195115 TTCCTGGGACCAATCGAGAG 58.805 55.000 0.00 0.00 0.00 3.20
79 80 3.173668 TCCAGCGACGTAATTTGCTAT 57.826 42.857 0.00 0.00 35.56 2.97
85 86 3.916172 GCGACGTAATTTGCTATATCCGA 59.084 43.478 0.00 0.00 0.00 4.55
119 120 2.281070 AACCAGCACGAGCACCAG 60.281 61.111 7.77 0.00 45.49 4.00
147 148 4.077184 GACGCCACCGGTCATCCA 62.077 66.667 2.59 0.00 39.22 3.41
148 149 3.385749 GACGCCACCGGTCATCCAT 62.386 63.158 2.59 0.00 39.22 3.41
225 226 4.704833 TCAGCTCCTGGCAACGGC 62.705 66.667 0.00 0.00 44.79 5.68
255 256 2.611292 GAGTTGGCTATGCTGCAACTAG 59.389 50.000 6.36 6.15 35.83 2.57
256 257 1.672881 GTTGGCTATGCTGCAACTAGG 59.327 52.381 6.36 0.00 34.04 3.02
260 261 1.858091 CTATGCTGCAACTAGGACCG 58.142 55.000 6.36 0.00 0.00 4.79
267 268 2.758737 AACTAGGACCGGGGAGCG 60.759 66.667 6.32 0.00 0.00 5.03
291 292 1.566018 CGTGTTGGGCGAGGTTCTTC 61.566 60.000 0.00 0.00 0.00 2.87
296 297 1.003233 GGGCGAGGTTCTTCTGCTT 60.003 57.895 0.00 0.00 0.00 3.91
297 298 1.301677 GGGCGAGGTTCTTCTGCTTG 61.302 60.000 0.00 0.00 0.00 4.01
309 310 1.673665 CTGCTTGAGGGGCACAGTC 60.674 63.158 0.00 0.00 35.71 3.51
398 415 1.741770 AAGGTCAATGGCGCTCGTC 60.742 57.895 7.64 0.00 0.00 4.20
488 505 4.126208 TGTTCGTGGAACAGAAGTGTAA 57.874 40.909 7.07 0.00 45.88 2.41
509 526 7.378728 GTGTAACTTTATCAAGTGGCTCAAAAC 59.621 37.037 0.00 0.00 42.89 2.43
511 528 4.023193 ACTTTATCAAGTGGCTCAAAACCG 60.023 41.667 0.00 0.00 42.05 4.44
520 537 0.733150 GCTCAAAACCGCTGTATCCC 59.267 55.000 0.00 0.00 0.00 3.85
539 556 3.330853 CGGCTAGGACGCGATTGC 61.331 66.667 15.93 10.79 37.91 3.56
556 573 2.333225 CGCCTAGCACTCGCCTAG 59.667 66.667 0.00 0.00 39.83 3.02
557 574 2.482333 CGCCTAGCACTCGCCTAGT 61.482 63.158 0.00 0.00 39.83 2.57
558 575 1.164662 CGCCTAGCACTCGCCTAGTA 61.165 60.000 0.00 0.00 39.83 1.82
559 576 1.030457 GCCTAGCACTCGCCTAGTAA 58.970 55.000 0.00 0.00 39.83 2.24
560 577 1.001158 GCCTAGCACTCGCCTAGTAAG 60.001 57.143 0.00 0.00 39.83 2.34
561 578 2.573369 CCTAGCACTCGCCTAGTAAGA 58.427 52.381 0.00 0.00 39.83 2.10
562 579 2.950309 CCTAGCACTCGCCTAGTAAGAA 59.050 50.000 0.00 0.00 39.83 2.52
563 580 3.380637 CCTAGCACTCGCCTAGTAAGAAA 59.619 47.826 0.00 0.00 39.83 2.52
564 581 4.038162 CCTAGCACTCGCCTAGTAAGAAAT 59.962 45.833 0.00 0.00 39.83 2.17
565 582 3.786635 AGCACTCGCCTAGTAAGAAATG 58.213 45.455 0.00 0.00 39.83 2.32
566 583 2.285488 GCACTCGCCTAGTAAGAAATGC 59.715 50.000 0.00 0.00 35.76 3.56
567 584 3.786635 CACTCGCCTAGTAAGAAATGCT 58.213 45.455 0.00 0.00 35.76 3.79
568 585 3.553511 CACTCGCCTAGTAAGAAATGCTG 59.446 47.826 0.00 0.00 35.76 4.41
569 586 2.541762 CTCGCCTAGTAAGAAATGCTGC 59.458 50.000 0.00 0.00 0.00 5.25
570 587 2.093711 TCGCCTAGTAAGAAATGCTGCA 60.094 45.455 4.13 4.13 0.00 4.41
571 588 2.677836 CGCCTAGTAAGAAATGCTGCAA 59.322 45.455 6.36 0.00 0.00 4.08
572 589 3.126858 CGCCTAGTAAGAAATGCTGCAAA 59.873 43.478 6.36 0.00 0.00 3.68
573 590 4.201950 CGCCTAGTAAGAAATGCTGCAAAT 60.202 41.667 6.36 0.00 0.00 2.32
574 591 5.007626 CGCCTAGTAAGAAATGCTGCAAATA 59.992 40.000 6.36 0.00 0.00 1.40
575 592 6.458206 CGCCTAGTAAGAAATGCTGCAAATAA 60.458 38.462 6.36 0.00 0.00 1.40
576 593 6.693113 GCCTAGTAAGAAATGCTGCAAATAAC 59.307 38.462 6.36 0.82 0.00 1.89
577 594 7.628366 GCCTAGTAAGAAATGCTGCAAATAACA 60.628 37.037 6.36 0.00 0.00 2.41
578 595 7.912250 CCTAGTAAGAAATGCTGCAAATAACAG 59.088 37.037 6.36 0.00 38.22 3.16
579 596 7.452880 AGTAAGAAATGCTGCAAATAACAGA 57.547 32.000 6.36 0.00 37.32 3.41
580 597 7.885297 AGTAAGAAATGCTGCAAATAACAGAA 58.115 30.769 6.36 0.00 37.32 3.02
581 598 8.359642 AGTAAGAAATGCTGCAAATAACAGAAA 58.640 29.630 6.36 0.00 37.32 2.52
582 599 9.143631 GTAAGAAATGCTGCAAATAACAGAAAT 57.856 29.630 6.36 0.00 37.32 2.17
584 601 9.709495 AAGAAATGCTGCAAATAACAGAAATAA 57.291 25.926 6.36 0.00 37.32 1.40
585 602 9.709495 AGAAATGCTGCAAATAACAGAAATAAA 57.291 25.926 6.36 0.00 37.32 1.40
607 624 5.862678 AAAAGAAATGAGTTTTTCCGGGA 57.137 34.783 0.00 0.00 36.47 5.14
608 625 5.862678 AAAGAAATGAGTTTTTCCGGGAA 57.137 34.783 5.09 5.09 36.47 3.97
609 626 6.419484 AAAGAAATGAGTTTTTCCGGGAAT 57.581 33.333 10.86 0.00 36.47 3.01
610 627 7.533289 AAAGAAATGAGTTTTTCCGGGAATA 57.467 32.000 10.86 2.65 36.47 1.75
611 628 7.533289 AAGAAATGAGTTTTTCCGGGAATAA 57.467 32.000 10.86 9.45 36.47 1.40
612 629 7.533289 AGAAATGAGTTTTTCCGGGAATAAA 57.467 32.000 10.86 10.87 36.47 1.40
613 630 8.134202 AGAAATGAGTTTTTCCGGGAATAAAT 57.866 30.769 10.86 11.36 36.47 1.40
614 631 8.034804 AGAAATGAGTTTTTCCGGGAATAAATG 58.965 33.333 15.76 0.00 36.47 2.32
615 632 5.652994 TGAGTTTTTCCGGGAATAAATGG 57.347 39.130 15.76 0.00 0.00 3.16
616 633 5.326069 TGAGTTTTTCCGGGAATAAATGGA 58.674 37.500 15.76 2.25 0.00 3.41
617 634 5.417580 TGAGTTTTTCCGGGAATAAATGGAG 59.582 40.000 15.76 0.00 0.00 3.86
618 635 5.330233 AGTTTTTCCGGGAATAAATGGAGT 58.670 37.500 10.86 0.00 0.00 3.85
619 636 6.486941 AGTTTTTCCGGGAATAAATGGAGTA 58.513 36.000 10.86 0.00 0.00 2.59
620 637 7.123383 AGTTTTTCCGGGAATAAATGGAGTAT 58.877 34.615 10.86 0.00 0.00 2.12
621 638 7.618117 AGTTTTTCCGGGAATAAATGGAGTATT 59.382 33.333 10.86 0.00 0.00 1.89
622 639 7.964666 TTTTCCGGGAATAAATGGAGTATTT 57.035 32.000 10.86 0.00 41.68 1.40
623 640 7.576861 TTTCCGGGAATAAATGGAGTATTTC 57.423 36.000 10.86 0.00 39.61 2.17
624 641 6.255294 TCCGGGAATAAATGGAGTATTTCA 57.745 37.500 0.00 0.00 39.61 2.69
625 642 6.848069 TCCGGGAATAAATGGAGTATTTCAT 58.152 36.000 0.00 0.00 39.61 2.57
626 643 7.980032 TCCGGGAATAAATGGAGTATTTCATA 58.020 34.615 0.00 0.00 39.61 2.15
627 644 8.611257 TCCGGGAATAAATGGAGTATTTCATAT 58.389 33.333 0.00 0.00 39.61 1.78
628 645 9.243105 CCGGGAATAAATGGAGTATTTCATATT 57.757 33.333 0.00 0.00 39.61 1.28
658 675 9.898152 TTTTTGAGGGATGAACAAAAGTTTTAT 57.102 25.926 0.00 0.00 41.92 1.40
659 676 9.898152 TTTTGAGGGATGAACAAAAGTTTTATT 57.102 25.926 0.00 0.00 38.17 1.40
660 677 9.541143 TTTGAGGGATGAACAAAAGTTTTATTC 57.459 29.630 11.61 11.61 31.94 1.75
661 678 8.243961 TGAGGGATGAACAAAAGTTTTATTCA 57.756 30.769 20.96 20.96 33.00 2.57
662 679 8.869109 TGAGGGATGAACAAAAGTTTTATTCAT 58.131 29.630 26.93 26.93 38.12 2.57
663 680 9.358872 GAGGGATGAACAAAAGTTTTATTCATC 57.641 33.333 34.27 34.27 43.51 2.92
664 681 8.869109 AGGGATGAACAAAAGTTTTATTCATCA 58.131 29.630 38.07 22.88 44.55 3.07
665 682 9.487790 GGGATGAACAAAAGTTTTATTCATCAA 57.512 29.630 38.07 17.20 44.55 2.57
675 692 9.665719 AAAGTTTTATTCATCAAAAACCACAGT 57.334 25.926 6.97 0.00 43.43 3.55
676 693 9.665719 AAGTTTTATTCATCAAAAACCACAGTT 57.334 25.926 6.97 0.00 43.43 3.16
678 695 9.701355 GTTTTATTCATCAAAAACCACAGTTTG 57.299 29.630 0.00 0.00 45.54 2.93
679 696 9.442047 TTTTATTCATCAAAAACCACAGTTTGT 57.558 25.926 0.00 0.00 45.54 2.83
690 707 3.492421 CACAGTTTGTGGGATACATGC 57.508 47.619 1.31 0.00 44.27 4.06
691 708 3.084039 CACAGTTTGTGGGATACATGCT 58.916 45.455 1.31 0.00 44.27 3.79
692 709 3.084039 ACAGTTTGTGGGATACATGCTG 58.916 45.455 0.00 0.00 42.28 4.41
693 710 2.424601 CAGTTTGTGGGATACATGCTGG 59.575 50.000 0.00 0.00 39.48 4.85
694 711 2.308570 AGTTTGTGGGATACATGCTGGA 59.691 45.455 0.00 0.00 39.48 3.86
695 712 3.053395 AGTTTGTGGGATACATGCTGGAT 60.053 43.478 0.00 0.00 39.48 3.41
696 713 2.936919 TGTGGGATACATGCTGGATC 57.063 50.000 0.00 1.01 36.98 3.36
697 714 1.070601 TGTGGGATACATGCTGGATCG 59.929 52.381 0.00 0.00 38.62 3.69
698 715 1.070758 GTGGGATACATGCTGGATCGT 59.929 52.381 0.00 0.00 38.62 3.73
699 716 1.070601 TGGGATACATGCTGGATCGTG 59.929 52.381 0.00 0.00 38.62 4.35
700 717 1.609061 GGGATACATGCTGGATCGTGG 60.609 57.143 0.00 0.00 38.62 4.94
701 718 1.609061 GGATACATGCTGGATCGTGGG 60.609 57.143 0.00 0.00 38.62 4.61
702 719 0.397941 ATACATGCTGGATCGTGGGG 59.602 55.000 0.00 0.00 0.00 4.96
703 720 1.695114 TACATGCTGGATCGTGGGGG 61.695 60.000 0.00 0.00 0.00 5.40
704 721 2.692368 ATGCTGGATCGTGGGGGT 60.692 61.111 0.00 0.00 0.00 4.95
705 722 3.047807 ATGCTGGATCGTGGGGGTG 62.048 63.158 0.00 0.00 0.00 4.61
706 723 3.717294 GCTGGATCGTGGGGGTGT 61.717 66.667 0.00 0.00 0.00 4.16
707 724 2.363975 GCTGGATCGTGGGGGTGTA 61.364 63.158 0.00 0.00 0.00 2.90
708 725 1.906105 GCTGGATCGTGGGGGTGTAA 61.906 60.000 0.00 0.00 0.00 2.41
709 726 0.107848 CTGGATCGTGGGGGTGTAAC 60.108 60.000 0.00 0.00 0.00 2.50
710 727 0.836830 TGGATCGTGGGGGTGTAACA 60.837 55.000 0.00 0.00 39.98 2.41
711 728 0.107848 GGATCGTGGGGGTGTAACAG 60.108 60.000 0.00 0.00 39.98 3.16
712 729 0.743345 GATCGTGGGGGTGTAACAGC 60.743 60.000 0.00 0.00 39.98 4.40
721 738 0.951558 GGTGTAACAGCCACACTTGG 59.048 55.000 5.67 0.00 44.58 3.61
730 747 4.641645 CACACTTGGCGCCCCTGA 62.642 66.667 26.77 0.59 0.00 3.86
731 748 4.335647 ACACTTGGCGCCCCTGAG 62.336 66.667 26.77 18.37 0.00 3.35
734 751 3.785859 CTTGGCGCCCCTGAGCTA 61.786 66.667 26.77 0.00 37.46 3.32
735 752 3.746949 CTTGGCGCCCCTGAGCTAG 62.747 68.421 26.77 4.33 37.46 3.42
739 756 3.474570 CGCCCCTGAGCTAGCCTT 61.475 66.667 12.13 0.00 0.00 4.35
740 757 2.134287 CGCCCCTGAGCTAGCCTTA 61.134 63.158 12.13 0.00 0.00 2.69
741 758 1.751563 GCCCCTGAGCTAGCCTTAG 59.248 63.158 12.13 7.29 0.00 2.18
742 759 0.760945 GCCCCTGAGCTAGCCTTAGA 60.761 60.000 12.13 0.00 28.94 2.10
743 760 1.337118 CCCCTGAGCTAGCCTTAGAG 58.663 60.000 12.13 0.00 28.94 2.43
744 761 1.133325 CCCCTGAGCTAGCCTTAGAGA 60.133 57.143 12.13 0.00 28.94 3.10
745 762 2.238521 CCCTGAGCTAGCCTTAGAGAG 58.761 57.143 12.13 0.00 28.94 3.20
746 763 2.424234 CCCTGAGCTAGCCTTAGAGAGT 60.424 54.545 12.13 0.00 28.94 3.24
747 764 3.181438 CCCTGAGCTAGCCTTAGAGAGTA 60.181 52.174 12.13 0.00 28.94 2.59
748 765 4.508405 CCCTGAGCTAGCCTTAGAGAGTAT 60.508 50.000 12.13 0.00 28.94 2.12
749 766 5.076873 CCTGAGCTAGCCTTAGAGAGTATT 58.923 45.833 12.13 0.00 28.94 1.89
750 767 5.538433 CCTGAGCTAGCCTTAGAGAGTATTT 59.462 44.000 12.13 0.00 28.94 1.40
751 768 6.041523 CCTGAGCTAGCCTTAGAGAGTATTTT 59.958 42.308 12.13 0.00 28.94 1.82
752 769 6.810911 TGAGCTAGCCTTAGAGAGTATTTTG 58.189 40.000 12.13 0.00 0.00 2.44
753 770 5.606505 AGCTAGCCTTAGAGAGTATTTTGC 58.393 41.667 12.13 0.00 0.00 3.68
754 771 5.365314 AGCTAGCCTTAGAGAGTATTTTGCT 59.635 40.000 12.13 0.00 0.00 3.91
755 772 6.551601 AGCTAGCCTTAGAGAGTATTTTGCTA 59.448 38.462 12.13 0.00 0.00 3.49
756 773 7.070074 AGCTAGCCTTAGAGAGTATTTTGCTAA 59.930 37.037 12.13 0.00 0.00 3.09
757 774 7.383843 GCTAGCCTTAGAGAGTATTTTGCTAAG 59.616 40.741 2.29 0.00 38.34 2.18
758 775 6.052360 AGCCTTAGAGAGTATTTTGCTAAGC 58.948 40.000 0.00 0.00 37.67 3.09
759 776 6.052360 GCCTTAGAGAGTATTTTGCTAAGCT 58.948 40.000 0.00 0.00 37.67 3.74
760 777 7.070074 AGCCTTAGAGAGTATTTTGCTAAGCTA 59.930 37.037 0.00 0.00 37.67 3.32
761 778 7.875554 GCCTTAGAGAGTATTTTGCTAAGCTAT 59.124 37.037 0.00 0.00 37.67 2.97
762 779 9.202273 CCTTAGAGAGTATTTTGCTAAGCTATG 57.798 37.037 0.00 0.00 37.67 2.23
763 780 8.594881 TTAGAGAGTATTTTGCTAAGCTATGC 57.405 34.615 4.15 4.15 0.00 3.14
764 781 5.694006 AGAGAGTATTTTGCTAAGCTATGCG 59.306 40.000 6.41 0.00 0.00 4.73
765 782 4.212214 AGAGTATTTTGCTAAGCTATGCGC 59.788 41.667 0.00 0.00 39.57 6.09
766 783 3.876914 AGTATTTTGCTAAGCTATGCGCA 59.123 39.130 14.96 14.96 42.61 6.09
767 784 3.996150 ATTTTGCTAAGCTATGCGCAT 57.004 38.095 28.23 28.23 42.61 4.73
768 785 3.338818 TTTTGCTAAGCTATGCGCATC 57.661 42.857 29.11 14.07 42.61 3.91
769 786 0.861185 TTGCTAAGCTATGCGCATCG 59.139 50.000 29.11 22.46 42.61 3.84
770 787 0.249447 TGCTAAGCTATGCGCATCGT 60.249 50.000 29.11 14.35 42.61 3.73
771 788 0.861837 GCTAAGCTATGCGCATCGTT 59.138 50.000 29.11 16.55 42.61 3.85
772 789 2.058798 GCTAAGCTATGCGCATCGTTA 58.941 47.619 29.11 19.97 42.61 3.18
773 790 2.668457 GCTAAGCTATGCGCATCGTTAT 59.332 45.455 29.11 13.08 42.61 1.89
774 791 3.123621 GCTAAGCTATGCGCATCGTTATT 59.876 43.478 29.11 17.92 42.61 1.40
775 792 4.326278 GCTAAGCTATGCGCATCGTTATTA 59.674 41.667 29.11 18.07 42.61 0.98
776 793 4.910746 AAGCTATGCGCATCGTTATTAG 57.089 40.909 29.11 17.69 42.61 1.73
777 794 4.174411 AGCTATGCGCATCGTTATTAGA 57.826 40.909 29.11 4.66 42.61 2.10
778 795 4.748892 AGCTATGCGCATCGTTATTAGAT 58.251 39.130 29.11 12.90 42.61 1.98
779 796 4.800993 AGCTATGCGCATCGTTATTAGATC 59.199 41.667 29.11 4.95 42.61 2.75
780 797 4.316722 GCTATGCGCATCGTTATTAGATCG 60.317 45.833 29.11 0.00 38.92 3.69
781 798 2.324860 TGCGCATCGTTATTAGATCGG 58.675 47.619 5.66 0.00 0.00 4.18
782 799 1.059264 GCGCATCGTTATTAGATCGGC 59.941 52.381 0.30 0.00 0.00 5.54
783 800 1.317611 CGCATCGTTATTAGATCGGCG 59.682 52.381 0.00 0.00 35.38 6.46
784 801 1.059264 GCATCGTTATTAGATCGGCGC 59.941 52.381 0.00 0.00 0.00 6.53
785 802 2.324860 CATCGTTATTAGATCGGCGCA 58.675 47.619 10.83 0.00 0.00 6.09
786 803 2.717580 TCGTTATTAGATCGGCGCAT 57.282 45.000 10.83 0.00 0.00 4.73
787 804 3.021269 TCGTTATTAGATCGGCGCATT 57.979 42.857 10.83 0.00 0.00 3.56
788 805 3.386486 TCGTTATTAGATCGGCGCATTT 58.614 40.909 10.83 0.00 0.00 2.32
789 806 3.427528 TCGTTATTAGATCGGCGCATTTC 59.572 43.478 10.83 1.64 0.00 2.17
790 807 3.183574 CGTTATTAGATCGGCGCATTTCA 59.816 43.478 10.83 0.00 0.00 2.69
791 808 4.143115 CGTTATTAGATCGGCGCATTTCAT 60.143 41.667 10.83 0.00 0.00 2.57
792 809 5.061684 CGTTATTAGATCGGCGCATTTCATA 59.938 40.000 10.83 0.00 0.00 2.15
793 810 6.237835 CGTTATTAGATCGGCGCATTTCATAT 60.238 38.462 10.83 2.77 0.00 1.78
794 811 4.926860 TTAGATCGGCGCATTTCATATG 57.073 40.909 10.83 0.00 0.00 1.78
857 874 0.733150 TGACGTCTGCCGATCTACTG 59.267 55.000 17.92 0.00 40.70 2.74
858 875 0.592754 GACGTCTGCCGATCTACTGC 60.593 60.000 8.70 0.00 40.70 4.40
859 876 1.032657 ACGTCTGCCGATCTACTGCT 61.033 55.000 0.00 0.00 40.70 4.24
860 877 0.945099 CGTCTGCCGATCTACTGCTA 59.055 55.000 0.00 0.00 39.56 3.49
861 878 1.537638 CGTCTGCCGATCTACTGCTAT 59.462 52.381 0.00 0.00 39.56 2.97
862 879 2.742589 CGTCTGCCGATCTACTGCTATA 59.257 50.000 0.00 0.00 39.56 1.31
863 880 3.375610 CGTCTGCCGATCTACTGCTATAT 59.624 47.826 0.00 0.00 39.56 0.86
864 881 4.667262 GTCTGCCGATCTACTGCTATATG 58.333 47.826 0.00 0.00 0.00 1.78
865 882 3.129462 TCTGCCGATCTACTGCTATATGC 59.871 47.826 0.00 0.00 43.25 3.14
873 891 3.003568 CTGCTATATGCGCACGCGG 62.004 63.158 14.90 14.61 46.63 6.46
920 938 4.096382 CGGTTGGTGGGAATTTCTTATCAG 59.904 45.833 0.00 0.00 0.00 2.90
1383 1417 2.223688 CCTCTCCAAGATGTACGAGCTG 60.224 54.545 0.00 0.00 0.00 4.24
1405 1439 1.875813 GACACGCTGCTGATCCTCG 60.876 63.158 0.00 0.00 0.00 4.63
1450 1484 4.047059 ACGTCTACCACCACGCCG 62.047 66.667 0.00 0.00 39.73 6.46
1679 1713 3.423154 CTGGTTCCACTTCGCCGC 61.423 66.667 0.00 0.00 0.00 6.53
1805 1839 2.223805 CCAAGGCCAACAAGAAGAACAC 60.224 50.000 5.01 0.00 0.00 3.32
1808 1842 1.067060 GGCCAACAAGAAGAACACCAC 59.933 52.381 0.00 0.00 0.00 4.16
1847 1884 3.884226 GGGGGAAATCAGAGTGACC 57.116 57.895 0.00 0.00 0.00 4.02
1850 1887 1.340114 GGGGAAATCAGAGTGACCACC 60.340 57.143 0.00 0.00 0.00 4.61
1854 1891 1.059098 AATCAGAGTGACCACCTGCA 58.941 50.000 11.32 0.00 32.96 4.41
1867 1904 3.114616 CTGCACGCGTGAAGAGGG 61.115 66.667 38.78 15.69 38.57 4.30
1868 1905 4.680237 TGCACGCGTGAAGAGGGG 62.680 66.667 41.19 14.19 0.00 4.79
1872 1909 0.882927 CACGCGTGAAGAGGGGAAAA 60.883 55.000 34.93 0.00 0.00 2.29
1922 1962 6.877236 TGATTAATTCCAGGCCTTTTGATTC 58.123 36.000 0.00 0.00 0.00 2.52
2054 2096 7.581213 TGTTTTGATTCCTCTGCTTTTCTTA 57.419 32.000 0.00 0.00 0.00 2.10
2068 2124 4.260620 GCTTTTCTTACGTGAACTTCTGCA 60.261 41.667 0.00 0.00 0.00 4.41
2117 2181 9.383183 TCAGAATGCGATGTAGATTCAGCGATA 62.383 40.741 8.44 0.00 46.61 2.92
2146 2214 8.035984 AGTAGCTTCTGTCAGGACTATTTTTAC 58.964 37.037 0.00 0.00 0.00 2.01
2148 2216 5.354513 GCTTCTGTCAGGACTATTTTTACCC 59.645 44.000 0.00 0.00 0.00 3.69
2167 2235 8.575649 TTTACCCTCTTCTTTTGTATGGAATC 57.424 34.615 0.00 0.00 0.00 2.52
2238 2313 4.453751 TGTGTACTAAGTTGAACCAACCC 58.546 43.478 6.24 0.00 44.49 4.11
2239 2314 3.817084 GTGTACTAAGTTGAACCAACCCC 59.183 47.826 6.24 0.00 44.49 4.95
2240 2315 3.458857 TGTACTAAGTTGAACCAACCCCA 59.541 43.478 6.24 0.00 44.49 4.96
2255 2330 1.056660 CCCCAACCGAGCCTACATAT 58.943 55.000 0.00 0.00 0.00 1.78
2256 2331 1.002087 CCCCAACCGAGCCTACATATC 59.998 57.143 0.00 0.00 0.00 1.63
2292 2368 9.872757 GAACTGTATTTTCTTTCGTATGTCAAA 57.127 29.630 0.00 0.00 0.00 2.69
2301 2377 8.483307 TTCTTTCGTATGTCAAATAAGTACCC 57.517 34.615 0.00 0.00 0.00 3.69
2338 2419 9.985730 CAGGTATGGAATTGCATTATAACATTT 57.014 29.630 18.12 0.00 0.00 2.32
2397 2489 3.803082 CCCCATCTGCAACGCACG 61.803 66.667 0.00 0.00 33.79 5.34
2410 2502 4.331443 TGCAACGCACGAACAATTATCTAT 59.669 37.500 0.00 0.00 31.71 1.98
2492 2584 0.446222 AATGGTTTCGCCGACAATCG 59.554 50.000 0.00 0.00 41.21 3.34
2519 2611 2.309528 TGTGAAGTCGAGTGTTGCTT 57.690 45.000 0.00 0.00 0.00 3.91
2520 2612 2.627945 TGTGAAGTCGAGTGTTGCTTT 58.372 42.857 0.00 0.00 0.00 3.51
2521 2613 3.006940 TGTGAAGTCGAGTGTTGCTTTT 58.993 40.909 0.00 0.00 0.00 2.27
2522 2614 3.063452 TGTGAAGTCGAGTGTTGCTTTTC 59.937 43.478 0.00 0.00 0.00 2.29
2523 2615 2.284150 TGAAGTCGAGTGTTGCTTTTCG 59.716 45.455 0.00 0.00 34.56 3.46
2524 2616 2.218953 AGTCGAGTGTTGCTTTTCGA 57.781 45.000 0.00 0.00 39.48 3.71
2525 2617 2.755650 AGTCGAGTGTTGCTTTTCGAT 58.244 42.857 0.00 0.00 43.03 3.59
2526 2618 3.909430 AGTCGAGTGTTGCTTTTCGATA 58.091 40.909 0.00 0.00 43.03 2.92
2527 2619 4.304110 AGTCGAGTGTTGCTTTTCGATAA 58.696 39.130 0.00 0.00 43.03 1.75
2528 2620 4.748102 AGTCGAGTGTTGCTTTTCGATAAA 59.252 37.500 0.00 0.00 43.03 1.40
2529 2621 5.073478 GTCGAGTGTTGCTTTTCGATAAAG 58.927 41.667 12.76 12.76 43.03 1.85
2530 2622 4.986034 TCGAGTGTTGCTTTTCGATAAAGA 59.014 37.500 18.27 6.35 37.18 2.52
2531 2623 5.464057 TCGAGTGTTGCTTTTCGATAAAGAA 59.536 36.000 18.27 9.39 37.18 2.52
2532 2624 6.147164 TCGAGTGTTGCTTTTCGATAAAGAAT 59.853 34.615 18.27 3.25 37.18 2.40
2533 2625 6.247165 CGAGTGTTGCTTTTCGATAAAGAATG 59.753 38.462 18.27 1.21 35.19 2.67
2534 2626 7.202016 AGTGTTGCTTTTCGATAAAGAATGA 57.798 32.000 18.27 2.03 0.00 2.57
2535 2627 7.648142 AGTGTTGCTTTTCGATAAAGAATGAA 58.352 30.769 18.27 6.98 0.00 2.57
2536 2628 8.299570 AGTGTTGCTTTTCGATAAAGAATGAAT 58.700 29.630 18.27 1.61 0.00 2.57
2537 2629 8.915654 GTGTTGCTTTTCGATAAAGAATGAATT 58.084 29.630 18.27 0.00 0.00 2.17
2538 2630 9.474920 TGTTGCTTTTCGATAAAGAATGAATTT 57.525 25.926 18.27 0.00 0.00 1.82
2556 2648 9.846248 AATGAATTTTACTGACTCAATTGTAGC 57.154 29.630 5.13 0.00 0.00 3.58
2557 2649 8.389779 TGAATTTTACTGACTCAATTGTAGCA 57.610 30.769 5.13 1.46 0.00 3.49
2558 2650 9.013229 TGAATTTTACTGACTCAATTGTAGCAT 57.987 29.630 5.13 0.00 0.00 3.79
2559 2651 9.495754 GAATTTTACTGACTCAATTGTAGCATC 57.504 33.333 5.13 0.00 0.00 3.91
2560 2652 7.977789 TTTTACTGACTCAATTGTAGCATCA 57.022 32.000 5.13 3.09 0.00 3.07
2561 2653 7.977789 TTTACTGACTCAATTGTAGCATCAA 57.022 32.000 5.13 0.00 0.00 2.57
2562 2654 7.977789 TTACTGACTCAATTGTAGCATCAAA 57.022 32.000 5.13 0.00 0.00 2.69
2563 2655 6.882610 ACTGACTCAATTGTAGCATCAAAA 57.117 33.333 5.13 0.00 0.00 2.44
2564 2656 6.906659 ACTGACTCAATTGTAGCATCAAAAG 58.093 36.000 5.13 0.00 0.00 2.27
2565 2657 6.712095 ACTGACTCAATTGTAGCATCAAAAGA 59.288 34.615 5.13 0.00 0.00 2.52
2566 2658 7.229306 ACTGACTCAATTGTAGCATCAAAAGAA 59.771 33.333 5.13 0.00 0.00 2.52
2567 2659 8.114331 TGACTCAATTGTAGCATCAAAAGAAT 57.886 30.769 5.13 0.00 0.00 2.40
2568 2660 9.230122 TGACTCAATTGTAGCATCAAAAGAATA 57.770 29.630 5.13 0.00 0.00 1.75
2569 2661 9.495754 GACTCAATTGTAGCATCAAAAGAATAC 57.504 33.333 5.13 0.00 0.00 1.89
2570 2662 9.013229 ACTCAATTGTAGCATCAAAAGAATACA 57.987 29.630 5.13 0.00 0.00 2.29
2571 2663 9.844790 CTCAATTGTAGCATCAAAAGAATACAA 57.155 29.630 5.13 0.00 37.48 2.41
2574 2666 9.979578 AATTGTAGCATCAAAAGAATACAAACA 57.020 25.926 0.00 0.00 36.88 2.83
2580 2672 9.013229 AGCATCAAAAGAATACAAACATAGTGA 57.987 29.630 0.00 0.00 0.00 3.41
2581 2673 9.282247 GCATCAAAAGAATACAAACATAGTGAG 57.718 33.333 0.00 0.00 0.00 3.51
2582 2674 9.282247 CATCAAAAGAATACAAACATAGTGAGC 57.718 33.333 0.00 0.00 0.00 4.26
2583 2675 8.389779 TCAAAAGAATACAAACATAGTGAGCA 57.610 30.769 0.00 0.00 0.00 4.26
2584 2676 8.289618 TCAAAAGAATACAAACATAGTGAGCAC 58.710 33.333 0.00 0.00 0.00 4.40
2585 2677 7.744087 AAAGAATACAAACATAGTGAGCACA 57.256 32.000 3.19 0.00 0.00 4.57
2586 2678 6.727824 AGAATACAAACATAGTGAGCACAC 57.272 37.500 6.11 6.11 46.24 3.82
2590 2682 3.809832 ACAAACATAGTGAGCACACACTC 59.190 43.478 16.79 0.00 46.36 3.51
2591 2683 2.354109 ACATAGTGAGCACACACTCG 57.646 50.000 16.79 10.53 46.36 4.18
2592 2684 1.886542 ACATAGTGAGCACACACTCGA 59.113 47.619 16.79 1.07 46.36 4.04
2593 2685 2.254459 CATAGTGAGCACACACTCGAC 58.746 52.381 16.79 0.00 46.36 4.20
2594 2686 0.596577 TAGTGAGCACACACTCGACC 59.403 55.000 16.79 0.00 46.36 4.79
2595 2687 1.109920 AGTGAGCACACACTCGACCT 61.110 55.000 16.79 0.00 46.36 3.85
2596 2688 0.664767 GTGAGCACACACTCGACCTC 60.665 60.000 9.58 0.00 45.32 3.85
2597 2689 0.823769 TGAGCACACACTCGACCTCT 60.824 55.000 0.00 0.00 39.68 3.69
2598 2690 0.387878 GAGCACACACTCGACCTCTG 60.388 60.000 0.00 0.00 0.00 3.35
2599 2691 2.024319 GCACACACTCGACCTCTGC 61.024 63.158 0.00 0.00 0.00 4.26
2600 2692 1.363807 CACACACTCGACCTCTGCA 59.636 57.895 0.00 0.00 0.00 4.41
2601 2693 0.037882 CACACACTCGACCTCTGCAT 60.038 55.000 0.00 0.00 0.00 3.96
2602 2694 1.202348 CACACACTCGACCTCTGCATA 59.798 52.381 0.00 0.00 0.00 3.14
2603 2695 1.474478 ACACACTCGACCTCTGCATAG 59.526 52.381 0.00 0.00 0.00 2.23
2604 2696 0.457851 ACACTCGACCTCTGCATAGC 59.542 55.000 0.00 0.00 0.00 2.97
2605 2697 0.743688 CACTCGACCTCTGCATAGCT 59.256 55.000 0.00 0.00 0.00 3.32
2606 2698 1.950216 CACTCGACCTCTGCATAGCTA 59.050 52.381 0.00 0.00 0.00 3.32
2607 2699 2.031245 CACTCGACCTCTGCATAGCTAG 60.031 54.545 0.00 0.00 0.00 3.42
2608 2700 1.539388 CTCGACCTCTGCATAGCTAGG 59.461 57.143 0.00 0.00 38.02 3.02
2609 2701 1.143073 TCGACCTCTGCATAGCTAGGA 59.857 52.381 10.11 0.00 36.44 2.94
2610 2702 2.166829 CGACCTCTGCATAGCTAGGAT 58.833 52.381 10.11 0.00 36.44 3.24
2611 2703 2.094803 CGACCTCTGCATAGCTAGGATG 60.095 54.545 10.11 0.00 36.44 3.51
2617 2709 3.593834 CATAGCTAGGATGCACGCA 57.406 52.632 0.00 0.00 34.99 5.24
2618 2710 1.426423 CATAGCTAGGATGCACGCAG 58.574 55.000 0.00 0.00 34.99 5.18
2619 2711 0.320247 ATAGCTAGGATGCACGCAGC 60.320 55.000 0.00 0.00 45.96 5.25
2628 2720 2.103934 GCACGCAGCAAACACCAA 59.896 55.556 0.00 0.00 44.79 3.67
2629 2721 1.300080 GCACGCAGCAAACACCAAT 60.300 52.632 0.00 0.00 44.79 3.16
2630 2722 1.550659 GCACGCAGCAAACACCAATG 61.551 55.000 0.00 0.00 44.79 2.82
2631 2723 1.300080 ACGCAGCAAACACCAATGC 60.300 52.632 0.00 0.00 42.87 3.56
2632 2724 1.300003 CGCAGCAAACACCAATGCA 60.300 52.632 0.00 0.00 44.95 3.96
2633 2725 1.550659 CGCAGCAAACACCAATGCAC 61.551 55.000 0.00 0.00 44.95 4.57
2634 2726 0.530211 GCAGCAAACACCAATGCACA 60.530 50.000 0.00 0.00 44.95 4.57
2635 2727 1.210870 CAGCAAACACCAATGCACAC 58.789 50.000 0.00 0.00 44.95 3.82
2636 2728 0.822811 AGCAAACACCAATGCACACA 59.177 45.000 0.00 0.00 44.95 3.72
2637 2729 0.929615 GCAAACACCAATGCACACAC 59.070 50.000 0.00 0.00 42.12 3.82
2638 2730 1.738365 GCAAACACCAATGCACACACA 60.738 47.619 0.00 0.00 42.12 3.72
2639 2731 1.925847 CAAACACCAATGCACACACAC 59.074 47.619 0.00 0.00 0.00 3.82
2640 2732 1.180907 AACACCAATGCACACACACA 58.819 45.000 0.00 0.00 0.00 3.72
2641 2733 0.455410 ACACCAATGCACACACACAC 59.545 50.000 0.00 0.00 0.00 3.82
2642 2734 0.455005 CACCAATGCACACACACACA 59.545 50.000 0.00 0.00 0.00 3.72
2643 2735 1.067364 CACCAATGCACACACACACAT 59.933 47.619 0.00 0.00 0.00 3.21
2644 2736 2.292845 CACCAATGCACACACACACATA 59.707 45.455 0.00 0.00 0.00 2.29
2645 2737 2.954989 ACCAATGCACACACACACATAA 59.045 40.909 0.00 0.00 0.00 1.90
2646 2738 3.243367 ACCAATGCACACACACACATAAC 60.243 43.478 0.00 0.00 0.00 1.89
2647 2739 3.243334 CCAATGCACACACACACATAACA 60.243 43.478 0.00 0.00 0.00 2.41
2648 2740 3.624326 ATGCACACACACACATAACAC 57.376 42.857 0.00 0.00 0.00 3.32
2649 2741 1.328986 TGCACACACACACATAACACG 59.671 47.619 0.00 0.00 0.00 4.49
2650 2742 1.919839 GCACACACACACATAACACGC 60.920 52.381 0.00 0.00 0.00 5.34
2651 2743 1.597195 CACACACACACATAACACGCT 59.403 47.619 0.00 0.00 0.00 5.07
2652 2744 1.597195 ACACACACACATAACACGCTG 59.403 47.619 0.00 0.00 0.00 5.18
2653 2745 1.864082 CACACACACATAACACGCTGA 59.136 47.619 0.00 0.00 0.00 4.26
2654 2746 1.864711 ACACACACATAACACGCTGAC 59.135 47.619 0.00 0.00 0.00 3.51
2655 2747 1.864082 CACACACATAACACGCTGACA 59.136 47.619 0.00 0.00 0.00 3.58
2656 2748 2.286563 CACACACATAACACGCTGACAA 59.713 45.455 0.00 0.00 0.00 3.18
2657 2749 2.939756 ACACACATAACACGCTGACAAA 59.060 40.909 0.00 0.00 0.00 2.83
2658 2750 3.563808 ACACACATAACACGCTGACAAAT 59.436 39.130 0.00 0.00 0.00 2.32
2659 2751 4.752604 ACACACATAACACGCTGACAAATA 59.247 37.500 0.00 0.00 0.00 1.40
2660 2752 5.107104 ACACACATAACACGCTGACAAATAG 60.107 40.000 0.00 0.00 0.00 1.73
2661 2753 4.142902 ACACATAACACGCTGACAAATAGC 60.143 41.667 0.00 0.00 37.80 2.97
2662 2754 4.000325 ACATAACACGCTGACAAATAGCA 59.000 39.130 0.00 0.00 41.18 3.49
2663 2755 4.454161 ACATAACACGCTGACAAATAGCAA 59.546 37.500 0.00 0.00 41.18 3.91
2664 2756 3.980646 AACACGCTGACAAATAGCAAA 57.019 38.095 0.00 0.00 41.18 3.68
2665 2757 3.542712 ACACGCTGACAAATAGCAAAG 57.457 42.857 0.00 0.00 41.18 2.77
2666 2758 2.878406 ACACGCTGACAAATAGCAAAGT 59.122 40.909 0.00 0.00 41.18 2.66
2667 2759 3.058914 ACACGCTGACAAATAGCAAAGTC 60.059 43.478 0.00 0.00 41.18 3.01
2668 2760 3.058983 CACGCTGACAAATAGCAAAGTCA 60.059 43.478 0.00 0.00 41.18 3.41
2669 2761 3.753272 ACGCTGACAAATAGCAAAGTCAT 59.247 39.130 0.00 0.00 41.18 3.06
2670 2762 4.935205 ACGCTGACAAATAGCAAAGTCATA 59.065 37.500 0.00 0.00 41.18 2.15
2671 2763 5.586243 ACGCTGACAAATAGCAAAGTCATAT 59.414 36.000 0.00 0.00 41.18 1.78
2672 2764 5.905733 CGCTGACAAATAGCAAAGTCATATG 59.094 40.000 0.00 0.00 41.18 1.78
2673 2765 6.238184 CGCTGACAAATAGCAAAGTCATATGA 60.238 38.462 0.00 0.00 41.18 2.15
2674 2766 7.130917 GCTGACAAATAGCAAAGTCATATGAG 58.869 38.462 5.42 0.00 39.92 2.90
2675 2767 7.011763 GCTGACAAATAGCAAAGTCATATGAGA 59.988 37.037 5.42 0.00 39.92 3.27
2676 2768 8.201554 TGACAAATAGCAAAGTCATATGAGAC 57.798 34.615 5.42 0.00 36.20 3.36
2677 2769 7.280876 TGACAAATAGCAAAGTCATATGAGACC 59.719 37.037 5.42 0.00 39.34 3.85
2678 2770 7.112122 ACAAATAGCAAAGTCATATGAGACCA 58.888 34.615 5.42 0.00 39.34 4.02
2679 2771 7.611467 ACAAATAGCAAAGTCATATGAGACCAA 59.389 33.333 5.42 0.00 39.34 3.67
2680 2772 8.461222 CAAATAGCAAAGTCATATGAGACCAAA 58.539 33.333 5.42 0.00 39.34 3.28
2681 2773 7.798596 ATAGCAAAGTCATATGAGACCAAAG 57.201 36.000 5.42 0.00 39.34 2.77
2682 2774 4.397417 AGCAAAGTCATATGAGACCAAAGC 59.603 41.667 5.42 4.68 39.34 3.51
2683 2775 4.397417 GCAAAGTCATATGAGACCAAAGCT 59.603 41.667 5.42 0.00 39.34 3.74
2684 2776 5.586243 GCAAAGTCATATGAGACCAAAGCTA 59.414 40.000 5.42 0.00 39.34 3.32
2685 2777 6.261826 GCAAAGTCATATGAGACCAAAGCTAT 59.738 38.462 5.42 0.00 39.34 2.97
2686 2778 7.637229 CAAAGTCATATGAGACCAAAGCTATG 58.363 38.462 5.42 0.00 39.34 2.23
2687 2779 5.303971 AGTCATATGAGACCAAAGCTATGC 58.696 41.667 5.42 0.00 39.34 3.14
2688 2780 4.151335 GTCATATGAGACCAAAGCTATGCG 59.849 45.833 5.42 0.00 32.36 4.73
2689 2781 2.698855 ATGAGACCAAAGCTATGCGT 57.301 45.000 0.00 0.00 0.00 5.24
2690 2782 1.725641 TGAGACCAAAGCTATGCGTG 58.274 50.000 0.00 0.00 0.00 5.34
2691 2783 1.009829 GAGACCAAAGCTATGCGTGG 58.990 55.000 11.79 11.79 41.89 4.94
2692 2784 0.392998 AGACCAAAGCTATGCGTGGG 60.393 55.000 15.85 8.38 40.97 4.61
2693 2785 0.392461 GACCAAAGCTATGCGTGGGA 60.392 55.000 15.85 0.00 40.97 4.37
2694 2786 0.392998 ACCAAAGCTATGCGTGGGAG 60.393 55.000 15.85 0.00 40.97 4.30
2695 2787 0.107703 CCAAAGCTATGCGTGGGAGA 60.108 55.000 0.00 0.00 35.80 3.71
2696 2788 1.293924 CAAAGCTATGCGTGGGAGAG 58.706 55.000 0.00 0.00 0.00 3.20
2697 2789 1.134699 CAAAGCTATGCGTGGGAGAGA 60.135 52.381 0.00 0.00 0.00 3.10
2698 2790 1.195115 AAGCTATGCGTGGGAGAGAA 58.805 50.000 0.00 0.00 0.00 2.87
2699 2791 1.195115 AGCTATGCGTGGGAGAGAAA 58.805 50.000 0.00 0.00 0.00 2.52
2700 2792 1.555075 AGCTATGCGTGGGAGAGAAAA 59.445 47.619 0.00 0.00 0.00 2.29
2701 2793 2.027192 AGCTATGCGTGGGAGAGAAAAA 60.027 45.455 0.00 0.00 0.00 1.94
2729 2821 4.707030 AAAGCGATCAGATTTGCAATCA 57.293 36.364 0.00 0.00 37.04 2.57
2730 2822 4.707030 AAGCGATCAGATTTGCAATCAA 57.293 36.364 0.00 0.00 0.00 2.57
2731 2823 4.025015 AGCGATCAGATTTGCAATCAAC 57.975 40.909 0.00 0.00 30.75 3.18
2732 2824 3.441222 AGCGATCAGATTTGCAATCAACA 59.559 39.130 0.00 0.00 30.75 3.33
2733 2825 4.082625 AGCGATCAGATTTGCAATCAACAA 60.083 37.500 0.00 0.00 30.75 2.83
2734 2826 4.622313 GCGATCAGATTTGCAATCAACAAA 59.378 37.500 0.00 0.00 40.98 2.83
2735 2827 5.443693 GCGATCAGATTTGCAATCAACAAAC 60.444 40.000 0.00 0.00 39.65 2.93
2736 2828 5.860182 CGATCAGATTTGCAATCAACAAACT 59.140 36.000 0.00 0.00 39.65 2.66
2737 2829 7.022979 CGATCAGATTTGCAATCAACAAACTA 58.977 34.615 0.00 0.00 39.65 2.24
2738 2830 7.007725 CGATCAGATTTGCAATCAACAAACTAC 59.992 37.037 0.00 0.00 39.65 2.73
2739 2831 7.036996 TCAGATTTGCAATCAACAAACTACA 57.963 32.000 0.00 0.00 39.65 2.74
2740 2832 7.487484 TCAGATTTGCAATCAACAAACTACAA 58.513 30.769 0.00 0.00 39.65 2.41
2741 2833 7.978414 TCAGATTTGCAATCAACAAACTACAAA 59.022 29.630 0.00 0.00 39.65 2.83
2742 2834 8.602328 CAGATTTGCAATCAACAAACTACAAAA 58.398 29.630 0.00 0.00 39.65 2.44
2743 2835 8.603181 AGATTTGCAATCAACAAACTACAAAAC 58.397 29.630 0.00 0.00 39.65 2.43
2744 2836 7.658179 TTTGCAATCAACAAACTACAAAACA 57.342 28.000 0.00 0.00 32.27 2.83
2745 2837 7.658179 TTGCAATCAACAAACTACAAAACAA 57.342 28.000 0.00 0.00 0.00 2.83
2746 2838 7.840342 TGCAATCAACAAACTACAAAACAAT 57.160 28.000 0.00 0.00 0.00 2.71
2747 2839 7.682824 TGCAATCAACAAACTACAAAACAATG 58.317 30.769 0.00 0.00 0.00 2.82
2748 2840 7.547019 TGCAATCAACAAACTACAAAACAATGA 59.453 29.630 0.00 0.00 0.00 2.57
2749 2841 7.845622 GCAATCAACAAACTACAAAACAATGAC 59.154 33.333 0.00 0.00 0.00 3.06
2750 2842 8.327429 CAATCAACAAACTACAAAACAATGACC 58.673 33.333 0.00 0.00 0.00 4.02
2751 2843 6.925211 TCAACAAACTACAAAACAATGACCA 58.075 32.000 0.00 0.00 0.00 4.02
2752 2844 7.551585 TCAACAAACTACAAAACAATGACCAT 58.448 30.769 0.00 0.00 0.00 3.55
2753 2845 8.687242 TCAACAAACTACAAAACAATGACCATA 58.313 29.630 0.00 0.00 0.00 2.74
2754 2846 9.474920 CAACAAACTACAAAACAATGACCATAT 57.525 29.630 0.00 0.00 0.00 1.78
2755 2847 9.691362 AACAAACTACAAAACAATGACCATATC 57.309 29.630 0.00 0.00 0.00 1.63
2756 2848 8.303876 ACAAACTACAAAACAATGACCATATCC 58.696 33.333 0.00 0.00 0.00 2.59
2757 2849 6.677781 ACTACAAAACAATGACCATATCCG 57.322 37.500 0.00 0.00 0.00 4.18
2758 2850 4.370364 ACAAAACAATGACCATATCCGC 57.630 40.909 0.00 0.00 0.00 5.54
2759 2851 3.761218 ACAAAACAATGACCATATCCGCA 59.239 39.130 0.00 0.00 0.00 5.69
2760 2852 4.104776 CAAAACAATGACCATATCCGCAC 58.895 43.478 0.00 0.00 0.00 5.34
2761 2853 1.967319 ACAATGACCATATCCGCACC 58.033 50.000 0.00 0.00 0.00 5.01
2762 2854 1.211703 ACAATGACCATATCCGCACCA 59.788 47.619 0.00 0.00 0.00 4.17
2763 2855 2.296792 CAATGACCATATCCGCACCAA 58.703 47.619 0.00 0.00 0.00 3.67
2764 2856 1.967319 ATGACCATATCCGCACCAAC 58.033 50.000 0.00 0.00 0.00 3.77
2765 2857 0.107410 TGACCATATCCGCACCAACC 60.107 55.000 0.00 0.00 0.00 3.77
2766 2858 0.107410 GACCATATCCGCACCAACCA 60.107 55.000 0.00 0.00 0.00 3.67
2767 2859 0.550914 ACCATATCCGCACCAACCAT 59.449 50.000 0.00 0.00 0.00 3.55
2768 2860 0.953727 CCATATCCGCACCAACCATG 59.046 55.000 0.00 0.00 0.00 3.66
2769 2861 1.679139 CATATCCGCACCAACCATGT 58.321 50.000 0.00 0.00 0.00 3.21
2770 2862 1.603802 CATATCCGCACCAACCATGTC 59.396 52.381 0.00 0.00 0.00 3.06
2771 2863 0.615850 TATCCGCACCAACCATGTCA 59.384 50.000 0.00 0.00 0.00 3.58
2772 2864 0.034186 ATCCGCACCAACCATGTCAT 60.034 50.000 0.00 0.00 0.00 3.06
2773 2865 0.959867 TCCGCACCAACCATGTCATG 60.960 55.000 5.79 5.79 0.00 3.07
2774 2866 0.959867 CCGCACCAACCATGTCATGA 60.960 55.000 14.67 0.00 0.00 3.07
2775 2867 0.168788 CGCACCAACCATGTCATGAC 59.831 55.000 19.27 19.27 0.00 3.06
2776 2868 1.246649 GCACCAACCATGTCATGACA 58.753 50.000 29.67 29.67 46.44 3.58
2777 2869 1.068333 GCACCAACCATGTCATGACAC 60.068 52.381 30.09 10.83 45.05 3.67
2778 2870 1.541147 CACCAACCATGTCATGACACC 59.459 52.381 30.09 2.42 45.05 4.16
2779 2871 1.144708 ACCAACCATGTCATGACACCA 59.855 47.619 30.09 8.92 45.05 4.17
2780 2872 1.541147 CCAACCATGTCATGACACCAC 59.459 52.381 30.09 2.26 45.05 4.16
2781 2873 2.507484 CAACCATGTCATGACACCACT 58.493 47.619 30.09 12.29 45.05 4.00
2782 2874 2.189594 ACCATGTCATGACACCACTG 57.810 50.000 30.09 22.58 45.05 3.66
2783 2875 1.271543 ACCATGTCATGACACCACTGG 60.272 52.381 31.24 31.24 45.05 4.00
2784 2876 1.456296 CATGTCATGACACCACTGGG 58.544 55.000 30.09 10.28 45.05 4.45
2785 2877 1.003464 CATGTCATGACACCACTGGGA 59.997 52.381 30.09 4.89 45.05 4.37
2786 2878 0.396435 TGTCATGACACCACTGGGAC 59.604 55.000 24.56 0.00 36.21 4.46
2787 2879 0.670546 GTCATGACACCACTGGGACG 60.671 60.000 21.07 0.00 38.05 4.79
2788 2880 0.830023 TCATGACACCACTGGGACGA 60.830 55.000 0.00 0.00 38.05 4.20
2789 2881 0.670546 CATGACACCACTGGGACGAC 60.671 60.000 0.00 0.00 38.05 4.34
2790 2882 2.049433 GACACCACTGGGACGACG 60.049 66.667 0.00 0.00 38.05 5.12
2791 2883 3.569049 GACACCACTGGGACGACGG 62.569 68.421 0.00 0.00 38.05 4.79
2792 2884 4.373116 CACCACTGGGACGACGGG 62.373 72.222 0.00 0.00 38.05 5.28
2795 2887 4.065281 CACTGGGACGACGGGGTC 62.065 72.222 0.00 0.00 36.18 4.46
2801 2893 3.053828 GACGACGGGGTCCTTCAA 58.946 61.111 0.00 0.00 0.00 2.69
2802 2894 1.373873 GACGACGGGGTCCTTCAAC 60.374 63.158 0.00 0.00 0.00 3.18
2803 2895 2.091102 GACGACGGGGTCCTTCAACA 62.091 60.000 0.00 0.00 0.00 3.33
2804 2896 1.374252 CGACGGGGTCCTTCAACAG 60.374 63.158 0.00 0.00 0.00 3.16
2805 2897 1.671379 GACGGGGTCCTTCAACAGC 60.671 63.158 0.00 0.00 0.00 4.40
2806 2898 2.391724 GACGGGGTCCTTCAACAGCA 62.392 60.000 0.00 0.00 0.00 4.41
2807 2899 1.228124 CGGGGTCCTTCAACAGCAA 60.228 57.895 0.00 0.00 0.00 3.91
2808 2900 1.515521 CGGGGTCCTTCAACAGCAAC 61.516 60.000 0.00 0.00 0.00 4.17
2809 2901 1.515521 GGGGTCCTTCAACAGCAACG 61.516 60.000 0.00 0.00 0.00 4.10
2810 2902 1.282875 GGTCCTTCAACAGCAACGC 59.717 57.895 0.00 0.00 0.00 4.84
2811 2903 1.282875 GTCCTTCAACAGCAACGCC 59.717 57.895 0.00 0.00 0.00 5.68
2812 2904 1.148273 TCCTTCAACAGCAACGCCT 59.852 52.632 0.00 0.00 0.00 5.52
2813 2905 0.465460 TCCTTCAACAGCAACGCCTT 60.465 50.000 0.00 0.00 0.00 4.35
2814 2906 0.040067 CCTTCAACAGCAACGCCTTC 60.040 55.000 0.00 0.00 0.00 3.46
2815 2907 0.662619 CTTCAACAGCAACGCCTTCA 59.337 50.000 0.00 0.00 0.00 3.02
2816 2908 0.662619 TTCAACAGCAACGCCTTCAG 59.337 50.000 0.00 0.00 0.00 3.02
2817 2909 1.165907 TCAACAGCAACGCCTTCAGG 61.166 55.000 0.00 0.00 38.53 3.86
2818 2910 1.148273 AACAGCAACGCCTTCAGGA 59.852 52.632 0.00 0.00 37.39 3.86
2819 2911 0.465460 AACAGCAACGCCTTCAGGAA 60.465 50.000 0.00 0.00 37.39 3.36
2820 2912 0.886490 ACAGCAACGCCTTCAGGAAG 60.886 55.000 0.00 2.01 37.39 3.46
2829 2921 2.846371 CTTCAGGAAGGGAGCAACG 58.154 57.895 1.01 0.00 34.87 4.10
2830 2922 1.301677 CTTCAGGAAGGGAGCAACGC 61.302 60.000 1.01 0.00 34.87 4.84
2831 2923 1.768684 TTCAGGAAGGGAGCAACGCT 61.769 55.000 0.00 0.00 43.88 5.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.135915 CTCACTCTCGATTGGTCCCAG 59.864 57.143 0.00 0.00 0.00 4.45
65 66 6.237227 CGATGTCGGATATAGCAAATTACGTC 60.237 42.308 0.00 0.00 35.37 4.34
79 80 3.559655 CCAGCAAAAATCGATGTCGGATA 59.440 43.478 0.00 0.00 40.29 2.59
85 86 2.890311 TGGTTCCAGCAAAAATCGATGT 59.110 40.909 0.00 0.00 0.00 3.06
119 120 4.634133 TGGCGTCGTGTGACCGTC 62.634 66.667 0.00 0.00 42.37 4.79
170 171 1.374758 CCTCTCGTTCCAGCACACC 60.375 63.158 0.00 0.00 0.00 4.16
241 242 1.539065 CCGGTCCTAGTTGCAGCATAG 60.539 57.143 2.55 0.00 0.00 2.23
276 277 1.302511 GCAGAAGAACCTCGCCCAA 60.303 57.895 0.00 0.00 0.00 4.12
291 292 1.673665 GACTGTGCCCCTCAAGCAG 60.674 63.158 0.00 0.00 41.87 4.24
421 438 1.059835 GCAAACTGACGAGAGCGAATC 59.940 52.381 0.00 0.00 41.64 2.52
488 505 4.023193 CGGTTTTGAGCCACTTGATAAAGT 60.023 41.667 0.00 0.00 0.00 2.66
499 516 1.448985 GATACAGCGGTTTTGAGCCA 58.551 50.000 0.00 0.00 0.00 4.75
539 556 1.164662 TACTAGGCGAGTGCTAGGCG 61.165 60.000 10.75 0.00 39.39 5.52
540 557 1.001158 CTTACTAGGCGAGTGCTAGGC 60.001 57.143 10.75 0.00 39.39 3.93
541 558 2.573369 TCTTACTAGGCGAGTGCTAGG 58.427 52.381 10.75 0.00 39.39 3.02
542 559 4.634184 TTTCTTACTAGGCGAGTGCTAG 57.366 45.455 10.75 5.46 39.39 3.42
543 560 4.736759 GCATTTCTTACTAGGCGAGTGCTA 60.737 45.833 10.75 0.00 39.39 3.49
544 561 3.786635 CATTTCTTACTAGGCGAGTGCT 58.213 45.455 10.75 0.00 39.39 4.40
545 562 2.285488 GCATTTCTTACTAGGCGAGTGC 59.715 50.000 10.75 0.00 39.39 4.40
546 563 3.553511 CAGCATTTCTTACTAGGCGAGTG 59.446 47.826 10.75 0.00 39.39 3.51
547 564 3.786635 CAGCATTTCTTACTAGGCGAGT 58.213 45.455 5.40 5.40 42.69 4.18
548 565 2.541762 GCAGCATTTCTTACTAGGCGAG 59.458 50.000 0.00 0.00 0.00 5.03
549 566 2.093711 TGCAGCATTTCTTACTAGGCGA 60.094 45.455 0.00 0.00 0.00 5.54
550 567 2.279741 TGCAGCATTTCTTACTAGGCG 58.720 47.619 0.00 0.00 0.00 5.52
551 568 4.701956 TTTGCAGCATTTCTTACTAGGC 57.298 40.909 0.00 0.00 0.00 3.93
552 569 7.761409 TGTTATTTGCAGCATTTCTTACTAGG 58.239 34.615 0.00 0.00 0.00 3.02
553 570 8.668353 TCTGTTATTTGCAGCATTTCTTACTAG 58.332 33.333 0.00 0.00 34.21 2.57
554 571 8.560355 TCTGTTATTTGCAGCATTTCTTACTA 57.440 30.769 0.00 0.00 34.21 1.82
555 572 7.452880 TCTGTTATTTGCAGCATTTCTTACT 57.547 32.000 0.00 0.00 34.21 2.24
556 573 8.519492 TTTCTGTTATTTGCAGCATTTCTTAC 57.481 30.769 0.00 0.00 34.21 2.34
558 575 9.709495 TTATTTCTGTTATTTGCAGCATTTCTT 57.291 25.926 0.00 0.00 34.21 2.52
559 576 9.709495 TTTATTTCTGTTATTTGCAGCATTTCT 57.291 25.926 0.00 0.00 34.21 2.52
584 601 6.228616 TCCCGGAAAAACTCATTTCTTTTT 57.771 33.333 0.73 0.00 38.92 1.94
585 602 5.862678 TCCCGGAAAAACTCATTTCTTTT 57.137 34.783 0.73 0.00 38.92 2.27
586 603 5.862678 TTCCCGGAAAAACTCATTTCTTT 57.137 34.783 0.73 0.00 38.92 2.52
587 604 7.533289 TTATTCCCGGAAAAACTCATTTCTT 57.467 32.000 0.73 0.00 38.92 2.52
588 605 7.533289 TTTATTCCCGGAAAAACTCATTTCT 57.467 32.000 0.73 0.00 38.92 2.52
589 606 7.277760 CCATTTATTCCCGGAAAAACTCATTTC 59.722 37.037 0.73 0.00 38.34 2.17
590 607 7.038658 TCCATTTATTCCCGGAAAAACTCATTT 60.039 33.333 0.73 0.00 0.00 2.32
591 608 6.439058 TCCATTTATTCCCGGAAAAACTCATT 59.561 34.615 0.73 0.00 0.00 2.57
592 609 5.955355 TCCATTTATTCCCGGAAAAACTCAT 59.045 36.000 0.73 0.00 0.00 2.90
593 610 5.326069 TCCATTTATTCCCGGAAAAACTCA 58.674 37.500 0.73 0.00 0.00 3.41
594 611 5.417894 ACTCCATTTATTCCCGGAAAAACTC 59.582 40.000 0.73 0.00 0.00 3.01
595 612 5.330233 ACTCCATTTATTCCCGGAAAAACT 58.670 37.500 0.73 0.00 0.00 2.66
596 613 5.654603 ACTCCATTTATTCCCGGAAAAAC 57.345 39.130 0.73 0.00 0.00 2.43
597 614 7.964666 AATACTCCATTTATTCCCGGAAAAA 57.035 32.000 0.73 6.91 0.00 1.94
598 615 7.616150 TGAAATACTCCATTTATTCCCGGAAAA 59.384 33.333 0.73 0.00 36.96 2.29
599 616 7.120051 TGAAATACTCCATTTATTCCCGGAAA 58.880 34.615 0.73 0.00 36.96 3.13
600 617 6.664714 TGAAATACTCCATTTATTCCCGGAA 58.335 36.000 0.73 1.31 36.96 4.30
601 618 6.255294 TGAAATACTCCATTTATTCCCGGA 57.745 37.500 0.73 0.00 36.96 5.14
602 619 8.807948 ATATGAAATACTCCATTTATTCCCGG 57.192 34.615 0.00 0.00 36.96 5.73
632 649 9.898152 ATAAAACTTTTGTTCATCCCTCAAAAA 57.102 25.926 0.00 0.00 42.67 1.94
633 650 9.898152 AATAAAACTTTTGTTCATCCCTCAAAA 57.102 25.926 0.00 0.00 42.67 2.44
634 651 9.541143 GAATAAAACTTTTGTTCATCCCTCAAA 57.459 29.630 15.26 0.00 42.67 2.69
635 652 8.700051 TGAATAAAACTTTTGTTCATCCCTCAA 58.300 29.630 17.71 0.00 42.67 3.02
636 653 8.243961 TGAATAAAACTTTTGTTCATCCCTCA 57.756 30.769 17.71 0.64 42.67 3.86
637 654 9.358872 GATGAATAAAACTTTTGTTCATCCCTC 57.641 33.333 32.19 21.11 42.67 4.30
638 655 8.869109 TGATGAATAAAACTTTTGTTCATCCCT 58.131 29.630 35.06 20.69 42.56 4.20
639 656 9.487790 TTGATGAATAAAACTTTTGTTCATCCC 57.512 29.630 35.06 24.79 42.56 3.85
649 666 9.665719 ACTGTGGTTTTTGATGAATAAAACTTT 57.334 25.926 0.00 0.00 41.60 2.66
650 667 9.665719 AACTGTGGTTTTTGATGAATAAAACTT 57.334 25.926 0.00 0.00 41.60 2.66
651 668 9.665719 AAACTGTGGTTTTTGATGAATAAAACT 57.334 25.926 0.00 0.00 42.28 2.66
652 669 9.701355 CAAACTGTGGTTTTTGATGAATAAAAC 57.299 29.630 0.00 0.00 42.96 2.43
653 670 9.442047 ACAAACTGTGGTTTTTGATGAATAAAA 57.558 25.926 1.25 0.00 42.96 1.52
654 671 8.877779 CACAAACTGTGGTTTTTGATGAATAAA 58.122 29.630 0.00 0.00 44.27 1.40
655 672 8.417780 CACAAACTGTGGTTTTTGATGAATAA 57.582 30.769 0.00 0.00 44.27 1.40
657 674 6.907206 CACAAACTGTGGTTTTTGATGAAT 57.093 33.333 0.00 0.00 44.27 2.57
671 688 3.084039 CAGCATGTATCCCACAAACTGT 58.916 45.455 0.00 0.00 41.55 3.55
672 689 2.424601 CCAGCATGTATCCCACAAACTG 59.575 50.000 0.00 0.00 41.55 3.16
673 690 2.308570 TCCAGCATGTATCCCACAAACT 59.691 45.455 0.00 0.00 41.55 2.66
674 691 2.722094 TCCAGCATGTATCCCACAAAC 58.278 47.619 0.00 0.00 41.55 2.93
675 692 3.554934 GATCCAGCATGTATCCCACAAA 58.445 45.455 0.00 0.00 41.55 2.83
676 693 2.485302 CGATCCAGCATGTATCCCACAA 60.485 50.000 0.00 0.00 41.55 3.33
677 694 1.070601 CGATCCAGCATGTATCCCACA 59.929 52.381 0.00 0.00 42.69 4.17
678 695 1.070758 ACGATCCAGCATGTATCCCAC 59.929 52.381 0.00 0.00 0.00 4.61
679 696 1.070601 CACGATCCAGCATGTATCCCA 59.929 52.381 0.00 0.00 0.00 4.37
680 697 1.609061 CCACGATCCAGCATGTATCCC 60.609 57.143 0.00 0.00 0.00 3.85
681 698 1.609061 CCCACGATCCAGCATGTATCC 60.609 57.143 0.00 0.00 0.00 2.59
682 699 1.609061 CCCCACGATCCAGCATGTATC 60.609 57.143 0.00 0.00 0.00 2.24
683 700 0.397941 CCCCACGATCCAGCATGTAT 59.602 55.000 0.00 0.00 0.00 2.29
684 701 1.695114 CCCCCACGATCCAGCATGTA 61.695 60.000 0.00 0.00 0.00 2.29
685 702 2.591753 CCCCACGATCCAGCATGT 59.408 61.111 0.00 0.00 0.00 3.21
686 703 2.203252 CCCCCACGATCCAGCATG 60.203 66.667 0.00 0.00 0.00 4.06
687 704 2.692368 ACCCCCACGATCCAGCAT 60.692 61.111 0.00 0.00 0.00 3.79
688 705 3.716195 CACCCCCACGATCCAGCA 61.716 66.667 0.00 0.00 0.00 4.41
689 706 1.906105 TTACACCCCCACGATCCAGC 61.906 60.000 0.00 0.00 0.00 4.85
690 707 0.107848 GTTACACCCCCACGATCCAG 60.108 60.000 0.00 0.00 0.00 3.86
691 708 0.836830 TGTTACACCCCCACGATCCA 60.837 55.000 0.00 0.00 0.00 3.41
692 709 0.107848 CTGTTACACCCCCACGATCC 60.108 60.000 0.00 0.00 0.00 3.36
693 710 0.743345 GCTGTTACACCCCCACGATC 60.743 60.000 0.00 0.00 0.00 3.69
694 711 1.298667 GCTGTTACACCCCCACGAT 59.701 57.895 0.00 0.00 0.00 3.73
695 712 2.745037 GCTGTTACACCCCCACGA 59.255 61.111 0.00 0.00 0.00 4.35
696 713 2.359478 GGCTGTTACACCCCCACG 60.359 66.667 0.00 0.00 0.00 4.94
697 714 1.602605 GTGGCTGTTACACCCCCAC 60.603 63.158 8.60 8.60 39.14 4.61
698 715 2.079288 TGTGGCTGTTACACCCCCA 61.079 57.895 0.00 0.00 38.05 4.96
699 716 1.602605 GTGTGGCTGTTACACCCCC 60.603 63.158 0.00 0.00 41.90 5.40
700 717 4.074647 GTGTGGCTGTTACACCCC 57.925 61.111 0.00 0.00 41.90 4.95
713 730 4.641645 TCAGGGGCGCCAAGTGTG 62.642 66.667 30.85 16.86 0.00 3.82
714 731 4.335647 CTCAGGGGCGCCAAGTGT 62.336 66.667 30.85 3.80 0.00 3.55
717 734 3.746949 CTAGCTCAGGGGCGCCAAG 62.747 68.421 30.85 19.72 37.29 3.61
718 735 3.785859 CTAGCTCAGGGGCGCCAA 61.786 66.667 30.85 9.43 37.29 4.52
722 739 2.093537 CTAAGGCTAGCTCAGGGGCG 62.094 65.000 15.72 0.00 37.29 6.13
723 740 0.760945 TCTAAGGCTAGCTCAGGGGC 60.761 60.000 15.72 0.00 0.00 5.80
724 741 1.133325 TCTCTAAGGCTAGCTCAGGGG 60.133 57.143 15.72 3.39 0.00 4.79
725 742 2.238521 CTCTCTAAGGCTAGCTCAGGG 58.761 57.143 15.72 9.30 0.00 4.45
726 743 2.944129 ACTCTCTAAGGCTAGCTCAGG 58.056 52.381 15.72 3.48 0.00 3.86
727 744 6.648879 AAATACTCTCTAAGGCTAGCTCAG 57.351 41.667 15.72 9.34 0.00 3.35
728 745 6.684111 GCAAAATACTCTCTAAGGCTAGCTCA 60.684 42.308 15.72 0.00 0.00 4.26
729 746 5.694458 GCAAAATACTCTCTAAGGCTAGCTC 59.306 44.000 15.72 4.82 0.00 4.09
730 747 5.365314 AGCAAAATACTCTCTAAGGCTAGCT 59.635 40.000 15.72 0.00 0.00 3.32
731 748 5.606505 AGCAAAATACTCTCTAAGGCTAGC 58.393 41.667 6.04 6.04 0.00 3.42
732 749 7.383843 GCTTAGCAAAATACTCTCTAAGGCTAG 59.616 40.741 0.00 0.00 37.65 3.42
733 750 7.070074 AGCTTAGCAAAATACTCTCTAAGGCTA 59.930 37.037 7.07 0.00 37.65 3.93
734 751 6.052360 GCTTAGCAAAATACTCTCTAAGGCT 58.948 40.000 0.00 0.00 37.65 4.58
735 752 6.052360 AGCTTAGCAAAATACTCTCTAAGGC 58.948 40.000 7.07 0.00 37.65 4.35
736 753 9.202273 CATAGCTTAGCAAAATACTCTCTAAGG 57.798 37.037 7.07 0.00 37.65 2.69
737 754 8.707839 GCATAGCTTAGCAAAATACTCTCTAAG 58.292 37.037 7.07 0.00 39.24 2.18
738 755 7.382488 CGCATAGCTTAGCAAAATACTCTCTAA 59.618 37.037 7.07 0.00 0.00 2.10
739 756 6.863645 CGCATAGCTTAGCAAAATACTCTCTA 59.136 38.462 7.07 0.00 0.00 2.43
740 757 5.694006 CGCATAGCTTAGCAAAATACTCTCT 59.306 40.000 7.07 0.00 0.00 3.10
741 758 5.613577 GCGCATAGCTTAGCAAAATACTCTC 60.614 44.000 7.07 0.00 44.04 3.20
742 759 4.212214 GCGCATAGCTTAGCAAAATACTCT 59.788 41.667 7.07 0.00 44.04 3.24
743 760 4.458708 GCGCATAGCTTAGCAAAATACTC 58.541 43.478 7.07 0.00 44.04 2.59
744 761 4.474226 GCGCATAGCTTAGCAAAATACT 57.526 40.909 7.07 0.00 44.04 2.12
758 775 4.205181 CCGATCTAATAACGATGCGCATAG 59.795 45.833 25.40 25.85 0.00 2.23
759 776 4.102649 CCGATCTAATAACGATGCGCATA 58.897 43.478 25.40 8.16 0.00 3.14
760 777 2.923655 CCGATCTAATAACGATGCGCAT 59.076 45.455 25.66 25.66 0.00 4.73
761 778 2.324860 CCGATCTAATAACGATGCGCA 58.675 47.619 14.96 14.96 0.00 6.09
762 779 1.059264 GCCGATCTAATAACGATGCGC 59.941 52.381 0.00 0.00 0.00 6.09
763 780 1.317611 CGCCGATCTAATAACGATGCG 59.682 52.381 0.00 0.00 33.58 4.73
764 781 1.059264 GCGCCGATCTAATAACGATGC 59.941 52.381 0.00 0.00 0.00 3.91
765 782 2.324860 TGCGCCGATCTAATAACGATG 58.675 47.619 4.18 0.00 0.00 3.84
766 783 2.717580 TGCGCCGATCTAATAACGAT 57.282 45.000 4.18 0.00 0.00 3.73
767 784 2.717580 ATGCGCCGATCTAATAACGA 57.282 45.000 4.18 0.00 0.00 3.85
768 785 3.183574 TGAAATGCGCCGATCTAATAACG 59.816 43.478 4.18 0.00 0.00 3.18
769 786 4.725556 TGAAATGCGCCGATCTAATAAC 57.274 40.909 4.18 0.00 0.00 1.89
770 787 6.816140 TCATATGAAATGCGCCGATCTAATAA 59.184 34.615 4.18 0.00 0.00 1.40
771 788 6.337356 TCATATGAAATGCGCCGATCTAATA 58.663 36.000 4.18 0.00 0.00 0.98
772 789 5.178061 TCATATGAAATGCGCCGATCTAAT 58.822 37.500 4.18 0.00 0.00 1.73
773 790 4.565022 TCATATGAAATGCGCCGATCTAA 58.435 39.130 4.18 0.00 0.00 2.10
774 791 4.186856 TCATATGAAATGCGCCGATCTA 57.813 40.909 4.18 0.00 0.00 1.98
775 792 3.044235 TCATATGAAATGCGCCGATCT 57.956 42.857 4.18 0.00 0.00 2.75
776 793 3.811722 TTCATATGAAATGCGCCGATC 57.188 42.857 15.82 0.00 0.00 3.69
777 794 4.566545 TTTTCATATGAAATGCGCCGAT 57.433 36.364 27.11 0.00 42.83 4.18
778 795 4.362932 TTTTTCATATGAAATGCGCCGA 57.637 36.364 27.11 11.17 42.83 5.54
823 840 1.675641 GTCAACAAGATGGGCCGCT 60.676 57.895 0.00 0.00 0.00 5.52
857 874 3.777925 CCCGCGTGCGCATATAGC 61.778 66.667 15.91 16.24 42.06 2.97
858 875 3.112075 CCCCGCGTGCGCATATAG 61.112 66.667 15.91 7.09 42.06 1.31
920 938 1.232621 GGGTGACACGTAGGGCAAAC 61.233 60.000 0.00 0.00 0.00 2.93
1425 1459 1.446272 GTGGTAGACGTGGAGCAGC 60.446 63.158 0.00 0.00 0.00 5.25
1808 1842 1.740585 CATTGCCATTGTTGCCATTGG 59.259 47.619 0.00 0.00 42.48 3.16
1847 1884 2.661537 TCTTCACGCGTGCAGGTG 60.662 61.111 32.82 20.26 35.50 4.00
1850 1887 3.114616 CCCTCTTCACGCGTGCAG 61.115 66.667 33.63 31.36 0.00 4.41
1854 1891 0.179040 TTTTTCCCCTCTTCACGCGT 60.179 50.000 5.58 5.58 0.00 6.01
1889 1926 8.045720 AGGCCTGGAATTAATCAGAAATACTA 57.954 34.615 3.11 0.00 33.11 1.82
1892 1929 8.477256 CAAAAGGCCTGGAATTAATCAGAAATA 58.523 33.333 5.69 0.00 33.11 1.40
1903 1940 3.056607 CACGAATCAAAAGGCCTGGAATT 60.057 43.478 5.69 4.14 0.00 2.17
1922 1962 1.135527 AGGCCAATGCATTTCATCACG 59.864 47.619 9.83 0.00 40.13 4.35
1988 2028 2.416747 CCTTCTGCATGAACGTCTTGA 58.583 47.619 0.00 0.00 0.00 3.02
2068 2124 6.095440 TGACTGAAGCAAAAGCTTAAGAACTT 59.905 34.615 18.84 0.00 33.59 2.66
2080 2136 2.877786 TCGCATTCTGACTGAAGCAAAA 59.122 40.909 0.00 0.00 38.18 2.44
2093 2156 3.055591 CGCTGAATCTACATCGCATTCT 58.944 45.455 0.00 0.00 0.00 2.40
2117 2181 3.707316 AGTCCTGACAGAAGCTACTGAT 58.293 45.455 3.32 0.00 40.63 2.90
2118 2182 3.162147 AGTCCTGACAGAAGCTACTGA 57.838 47.619 3.32 0.00 40.63 3.41
2146 2214 7.115414 AGAAGATTCCATACAAAAGAAGAGGG 58.885 38.462 0.00 0.00 0.00 4.30
2167 2235 6.727824 TTAATCTTGCTCCGAAGAAAGAAG 57.272 37.500 0.00 0.00 35.60 2.85
2212 2287 6.073222 GGTTGGTTCAACTTAGTACACATGAG 60.073 42.308 0.00 0.00 43.14 2.90
2238 2313 1.691976 TGGATATGTAGGCTCGGTTGG 59.308 52.381 0.00 0.00 0.00 3.77
2239 2314 3.685139 ATGGATATGTAGGCTCGGTTG 57.315 47.619 0.00 0.00 0.00 3.77
2240 2315 5.483937 TGAATATGGATATGTAGGCTCGGTT 59.516 40.000 0.00 0.00 0.00 4.44
2292 2368 6.731467 ACCTGACAATTGAATGGGTACTTAT 58.269 36.000 13.59 0.00 0.00 1.73
2301 2377 6.477688 GCAATTCCATACCTGACAATTGAATG 59.522 38.462 13.59 5.73 36.01 2.67
2338 2419 9.461312 AAGCAATCACTGTGATTACCTAATTTA 57.539 29.630 29.61 0.00 44.60 1.40
2339 2420 7.944729 AGCAATCACTGTGATTACCTAATTT 57.055 32.000 29.61 9.65 44.60 1.82
2340 2421 7.944729 AAGCAATCACTGTGATTACCTAATT 57.055 32.000 29.61 15.06 44.60 1.40
2342 2423 7.390823 TGTAAGCAATCACTGTGATTACCTAA 58.609 34.615 29.61 16.75 44.60 2.69
2343 2424 6.941857 TGTAAGCAATCACTGTGATTACCTA 58.058 36.000 29.61 18.29 44.60 3.08
2354 2440 7.186804 GCACGTATATTTTGTAAGCAATCACT 58.813 34.615 0.00 0.00 34.18 3.41
2375 2461 3.443045 GTTGCAGATGGGGGCACG 61.443 66.667 0.00 0.00 40.23 5.34
2442 2534 8.792633 CATGACCAACTTTCCTTGATTAACTTA 58.207 33.333 0.00 0.00 0.00 2.24
2443 2535 7.287696 ACATGACCAACTTTCCTTGATTAACTT 59.712 33.333 0.00 0.00 0.00 2.66
2451 2543 3.221771 TGGACATGACCAACTTTCCTTG 58.778 45.455 14.77 0.00 36.96 3.61
2452 2544 3.593442 TGGACATGACCAACTTTCCTT 57.407 42.857 14.77 0.00 36.96 3.36
2492 2584 1.792949 ACTCGACTTCACAATTGCGAC 59.207 47.619 5.05 0.00 0.00 5.19
2503 2595 2.538449 TCGAAAAGCAACACTCGACTTC 59.462 45.455 0.00 0.00 35.52 3.01
2530 2622 9.846248 GCTACAATTGAGTCAGTAAAATTCATT 57.154 29.630 13.59 0.00 0.00 2.57
2531 2623 9.013229 TGCTACAATTGAGTCAGTAAAATTCAT 57.987 29.630 13.59 0.00 0.00 2.57
2532 2624 8.389779 TGCTACAATTGAGTCAGTAAAATTCA 57.610 30.769 13.59 0.00 0.00 2.57
2533 2625 9.495754 GATGCTACAATTGAGTCAGTAAAATTC 57.504 33.333 13.59 0.00 0.00 2.17
2534 2626 9.013229 TGATGCTACAATTGAGTCAGTAAAATT 57.987 29.630 13.59 0.00 0.00 1.82
2535 2627 8.565896 TGATGCTACAATTGAGTCAGTAAAAT 57.434 30.769 13.59 0.00 0.00 1.82
2536 2628 7.977789 TGATGCTACAATTGAGTCAGTAAAA 57.022 32.000 13.59 0.00 0.00 1.52
2537 2629 7.977789 TTGATGCTACAATTGAGTCAGTAAA 57.022 32.000 13.59 0.00 0.00 2.01
2538 2630 7.977789 TTTGATGCTACAATTGAGTCAGTAA 57.022 32.000 13.59 3.58 0.00 2.24
2539 2631 7.877612 TCTTTTGATGCTACAATTGAGTCAGTA 59.122 33.333 13.59 3.68 0.00 2.74
2540 2632 6.712095 TCTTTTGATGCTACAATTGAGTCAGT 59.288 34.615 13.59 0.00 0.00 3.41
2541 2633 7.137490 TCTTTTGATGCTACAATTGAGTCAG 57.863 36.000 13.59 4.76 0.00 3.51
2542 2634 7.509141 TTCTTTTGATGCTACAATTGAGTCA 57.491 32.000 13.59 6.59 0.00 3.41
2543 2635 9.495754 GTATTCTTTTGATGCTACAATTGAGTC 57.504 33.333 13.59 3.28 0.00 3.36
2544 2636 9.013229 TGTATTCTTTTGATGCTACAATTGAGT 57.987 29.630 13.59 0.00 0.00 3.41
2545 2637 9.844790 TTGTATTCTTTTGATGCTACAATTGAG 57.155 29.630 13.59 6.50 30.41 3.02
2548 2640 9.979578 TGTTTGTATTCTTTTGATGCTACAATT 57.020 25.926 0.00 0.00 32.93 2.32
2554 2646 9.013229 TCACTATGTTTGTATTCTTTTGATGCT 57.987 29.630 0.00 0.00 0.00 3.79
2555 2647 9.282247 CTCACTATGTTTGTATTCTTTTGATGC 57.718 33.333 0.00 0.00 0.00 3.91
2556 2648 9.282247 GCTCACTATGTTTGTATTCTTTTGATG 57.718 33.333 0.00 0.00 0.00 3.07
2557 2649 9.013229 TGCTCACTATGTTTGTATTCTTTTGAT 57.987 29.630 0.00 0.00 0.00 2.57
2558 2650 8.289618 GTGCTCACTATGTTTGTATTCTTTTGA 58.710 33.333 0.00 0.00 0.00 2.69
2559 2651 8.075574 TGTGCTCACTATGTTTGTATTCTTTTG 58.924 33.333 1.47 0.00 0.00 2.44
2560 2652 8.076178 GTGTGCTCACTATGTTTGTATTCTTTT 58.924 33.333 11.58 0.00 40.98 2.27
2561 2653 7.228507 TGTGTGCTCACTATGTTTGTATTCTTT 59.771 33.333 18.85 0.00 44.14 2.52
2562 2654 6.710295 TGTGTGCTCACTATGTTTGTATTCTT 59.290 34.615 18.85 0.00 44.14 2.52
2563 2655 6.147821 GTGTGTGCTCACTATGTTTGTATTCT 59.852 38.462 18.85 0.00 44.14 2.40
2564 2656 6.147821 AGTGTGTGCTCACTATGTTTGTATTC 59.852 38.462 18.85 0.00 45.31 1.75
2565 2657 5.997746 AGTGTGTGCTCACTATGTTTGTATT 59.002 36.000 18.85 0.00 45.31 1.89
2566 2658 5.551233 AGTGTGTGCTCACTATGTTTGTAT 58.449 37.500 18.85 0.00 45.31 2.29
2567 2659 4.956085 AGTGTGTGCTCACTATGTTTGTA 58.044 39.130 18.85 0.00 45.31 2.41
2568 2660 3.808728 AGTGTGTGCTCACTATGTTTGT 58.191 40.909 18.85 0.00 45.31 2.83
2569 2661 3.120889 CGAGTGTGTGCTCACTATGTTTG 60.121 47.826 18.85 2.20 46.81 2.93
2570 2662 3.059884 CGAGTGTGTGCTCACTATGTTT 58.940 45.455 18.85 0.00 46.81 2.83
2571 2663 2.296190 TCGAGTGTGTGCTCACTATGTT 59.704 45.455 18.85 1.56 46.81 2.71
2572 2664 1.886542 TCGAGTGTGTGCTCACTATGT 59.113 47.619 18.85 2.15 46.81 2.29
2573 2665 2.254459 GTCGAGTGTGTGCTCACTATG 58.746 52.381 18.85 10.21 46.81 2.23
2574 2666 1.202582 GGTCGAGTGTGTGCTCACTAT 59.797 52.381 18.85 8.10 46.81 2.12
2575 2667 0.596577 GGTCGAGTGTGTGCTCACTA 59.403 55.000 18.85 4.05 46.81 2.74
2577 2669 0.664767 GAGGTCGAGTGTGTGCTCAC 60.665 60.000 11.94 11.94 44.08 3.51
2578 2670 0.823769 AGAGGTCGAGTGTGTGCTCA 60.824 55.000 0.00 0.00 35.33 4.26
2579 2671 0.387878 CAGAGGTCGAGTGTGTGCTC 60.388 60.000 0.00 0.00 0.00 4.26
2580 2672 1.662608 CAGAGGTCGAGTGTGTGCT 59.337 57.895 0.00 0.00 0.00 4.40
2581 2673 2.024319 GCAGAGGTCGAGTGTGTGC 61.024 63.158 0.00 0.00 0.00 4.57
2582 2674 0.037882 ATGCAGAGGTCGAGTGTGTG 60.038 55.000 0.00 0.00 0.00 3.82
2583 2675 1.474478 CTATGCAGAGGTCGAGTGTGT 59.526 52.381 0.00 0.00 0.00 3.72
2584 2676 1.800655 GCTATGCAGAGGTCGAGTGTG 60.801 57.143 10.92 0.00 0.00 3.82
2585 2677 0.457851 GCTATGCAGAGGTCGAGTGT 59.542 55.000 10.92 0.00 0.00 3.55
2586 2678 0.743688 AGCTATGCAGAGGTCGAGTG 59.256 55.000 7.34 0.00 0.00 3.51
2587 2679 2.226330 CTAGCTATGCAGAGGTCGAGT 58.774 52.381 17.53 0.00 0.00 4.18
2588 2680 1.539388 CCTAGCTATGCAGAGGTCGAG 59.461 57.143 17.53 9.75 31.84 4.04
2589 2681 1.143073 TCCTAGCTATGCAGAGGTCGA 59.857 52.381 17.53 10.96 36.01 4.20
2590 2682 1.610363 TCCTAGCTATGCAGAGGTCG 58.390 55.000 17.53 10.80 36.01 4.79
2591 2683 3.591196 CATCCTAGCTATGCAGAGGTC 57.409 52.381 17.53 0.00 36.01 3.85
2599 2691 1.426423 CTGCGTGCATCCTAGCTATG 58.574 55.000 0.00 0.00 34.99 2.23
2600 2692 0.320247 GCTGCGTGCATCCTAGCTAT 60.320 55.000 0.00 0.00 42.31 2.97
2601 2693 1.068083 GCTGCGTGCATCCTAGCTA 59.932 57.895 0.00 0.00 42.31 3.32
2602 2694 2.202987 GCTGCGTGCATCCTAGCT 60.203 61.111 0.00 0.00 42.31 3.32
2611 2703 1.300080 ATTGGTGTTTGCTGCGTGC 60.300 52.632 0.00 0.00 43.25 5.34
2612 2704 1.550659 GCATTGGTGTTTGCTGCGTG 61.551 55.000 0.00 0.00 35.95 5.34
2613 2705 1.300080 GCATTGGTGTTTGCTGCGT 60.300 52.632 0.00 0.00 35.95 5.24
2614 2706 1.300003 TGCATTGGTGTTTGCTGCG 60.300 52.632 0.00 0.00 39.60 5.18
2615 2707 0.530211 TGTGCATTGGTGTTTGCTGC 60.530 50.000 0.00 0.00 39.60 5.25
2616 2708 1.210870 GTGTGCATTGGTGTTTGCTG 58.789 50.000 0.00 0.00 39.60 4.41
2617 2709 0.822811 TGTGTGCATTGGTGTTTGCT 59.177 45.000 0.00 0.00 39.60 3.91
2618 2710 0.929615 GTGTGTGCATTGGTGTTTGC 59.070 50.000 0.00 0.00 39.33 3.68
2619 2711 1.925847 GTGTGTGTGCATTGGTGTTTG 59.074 47.619 0.00 0.00 0.00 2.93
2620 2712 1.547820 TGTGTGTGTGCATTGGTGTTT 59.452 42.857 0.00 0.00 0.00 2.83
2621 2713 1.135141 GTGTGTGTGTGCATTGGTGTT 60.135 47.619 0.00 0.00 0.00 3.32
2622 2714 0.455410 GTGTGTGTGTGCATTGGTGT 59.545 50.000 0.00 0.00 0.00 4.16
2623 2715 0.455005 TGTGTGTGTGTGCATTGGTG 59.545 50.000 0.00 0.00 0.00 4.17
2624 2716 1.401761 ATGTGTGTGTGTGCATTGGT 58.598 45.000 0.00 0.00 0.00 3.67
2625 2717 3.243334 TGTTATGTGTGTGTGTGCATTGG 60.243 43.478 0.00 0.00 0.00 3.16
2626 2718 3.730215 GTGTTATGTGTGTGTGTGCATTG 59.270 43.478 0.00 0.00 0.00 2.82
2627 2719 3.547813 CGTGTTATGTGTGTGTGTGCATT 60.548 43.478 0.00 0.00 0.00 3.56
2628 2720 2.032117 CGTGTTATGTGTGTGTGTGCAT 60.032 45.455 0.00 0.00 0.00 3.96
2629 2721 1.328986 CGTGTTATGTGTGTGTGTGCA 59.671 47.619 0.00 0.00 0.00 4.57
2630 2722 1.919839 GCGTGTTATGTGTGTGTGTGC 60.920 52.381 0.00 0.00 0.00 4.57
2631 2723 1.597195 AGCGTGTTATGTGTGTGTGTG 59.403 47.619 0.00 0.00 0.00 3.82
2632 2724 1.597195 CAGCGTGTTATGTGTGTGTGT 59.403 47.619 0.00 0.00 0.00 3.72
2633 2725 1.864082 TCAGCGTGTTATGTGTGTGTG 59.136 47.619 0.00 0.00 0.00 3.82
2634 2726 1.864711 GTCAGCGTGTTATGTGTGTGT 59.135 47.619 0.00 0.00 0.00 3.72
2635 2727 1.864082 TGTCAGCGTGTTATGTGTGTG 59.136 47.619 0.00 0.00 0.00 3.82
2636 2728 2.232756 TGTCAGCGTGTTATGTGTGT 57.767 45.000 0.00 0.00 0.00 3.72
2637 2729 3.600717 TTTGTCAGCGTGTTATGTGTG 57.399 42.857 0.00 0.00 0.00 3.82
2638 2730 4.142902 GCTATTTGTCAGCGTGTTATGTGT 60.143 41.667 0.00 0.00 0.00 3.72
2639 2731 4.142924 TGCTATTTGTCAGCGTGTTATGTG 60.143 41.667 0.00 0.00 42.13 3.21
2640 2732 4.000325 TGCTATTTGTCAGCGTGTTATGT 59.000 39.130 0.00 0.00 42.13 2.29
2641 2733 4.598406 TGCTATTTGTCAGCGTGTTATG 57.402 40.909 0.00 0.00 42.13 1.90
2642 2734 5.181245 ACTTTGCTATTTGTCAGCGTGTTAT 59.819 36.000 0.00 0.00 42.13 1.89
2643 2735 4.513692 ACTTTGCTATTTGTCAGCGTGTTA 59.486 37.500 0.00 0.00 42.13 2.41
2644 2736 3.315191 ACTTTGCTATTTGTCAGCGTGTT 59.685 39.130 0.00 0.00 42.13 3.32
2645 2737 2.878406 ACTTTGCTATTTGTCAGCGTGT 59.122 40.909 0.00 0.00 42.13 4.49
2646 2738 3.058983 TGACTTTGCTATTTGTCAGCGTG 60.059 43.478 0.00 0.00 42.13 5.34
2647 2739 3.138304 TGACTTTGCTATTTGTCAGCGT 58.862 40.909 0.00 0.00 42.13 5.07
2648 2740 3.811722 TGACTTTGCTATTTGTCAGCG 57.188 42.857 0.00 0.00 42.13 5.18
2649 2741 7.011763 TCTCATATGACTTTGCTATTTGTCAGC 59.988 37.037 0.00 0.00 41.77 4.26
2650 2742 8.333908 GTCTCATATGACTTTGCTATTTGTCAG 58.666 37.037 0.00 0.00 41.77 3.51
2651 2743 7.280876 GGTCTCATATGACTTTGCTATTTGTCA 59.719 37.037 0.00 0.00 42.50 3.58
2652 2744 7.280876 TGGTCTCATATGACTTTGCTATTTGTC 59.719 37.037 0.00 0.00 37.16 3.18
2653 2745 7.112122 TGGTCTCATATGACTTTGCTATTTGT 58.888 34.615 0.00 0.00 37.16 2.83
2654 2746 7.558161 TGGTCTCATATGACTTTGCTATTTG 57.442 36.000 0.00 0.00 37.16 2.32
2655 2747 8.579850 TTTGGTCTCATATGACTTTGCTATTT 57.420 30.769 0.00 0.00 37.16 1.40
2656 2748 7.201767 GCTTTGGTCTCATATGACTTTGCTATT 60.202 37.037 0.00 0.00 37.16 1.73
2657 2749 6.261826 GCTTTGGTCTCATATGACTTTGCTAT 59.738 38.462 0.00 0.00 37.16 2.97
2658 2750 5.586243 GCTTTGGTCTCATATGACTTTGCTA 59.414 40.000 0.00 0.00 37.16 3.49
2659 2751 4.397417 GCTTTGGTCTCATATGACTTTGCT 59.603 41.667 0.00 0.00 37.16 3.91
2660 2752 4.397417 AGCTTTGGTCTCATATGACTTTGC 59.603 41.667 0.00 0.91 37.16 3.68
2661 2753 7.637229 CATAGCTTTGGTCTCATATGACTTTG 58.363 38.462 0.00 0.00 37.16 2.77
2662 2754 6.261826 GCATAGCTTTGGTCTCATATGACTTT 59.738 38.462 0.00 0.00 37.16 2.66
2663 2755 5.762218 GCATAGCTTTGGTCTCATATGACTT 59.238 40.000 0.00 0.00 37.16 3.01
2664 2756 5.303971 GCATAGCTTTGGTCTCATATGACT 58.696 41.667 0.00 0.00 37.16 3.41
2665 2757 4.151335 CGCATAGCTTTGGTCTCATATGAC 59.849 45.833 0.00 0.00 36.31 3.06
2666 2758 4.202253 ACGCATAGCTTTGGTCTCATATGA 60.202 41.667 5.07 5.07 0.00 2.15
2667 2759 4.060900 ACGCATAGCTTTGGTCTCATATG 58.939 43.478 6.29 0.00 0.00 1.78
2668 2760 4.060900 CACGCATAGCTTTGGTCTCATAT 58.939 43.478 6.29 0.00 0.00 1.78
2669 2761 3.457234 CACGCATAGCTTTGGTCTCATA 58.543 45.455 6.29 0.00 0.00 2.15
2670 2762 2.283298 CACGCATAGCTTTGGTCTCAT 58.717 47.619 6.29 0.00 0.00 2.90
2671 2763 1.675714 CCACGCATAGCTTTGGTCTCA 60.676 52.381 6.29 0.00 0.00 3.27
2672 2764 1.009829 CCACGCATAGCTTTGGTCTC 58.990 55.000 6.29 0.00 0.00 3.36
2673 2765 0.392998 CCCACGCATAGCTTTGGTCT 60.393 55.000 6.29 0.00 30.45 3.85
2674 2766 0.392461 TCCCACGCATAGCTTTGGTC 60.392 55.000 6.29 0.00 30.45 4.02
2675 2767 0.392998 CTCCCACGCATAGCTTTGGT 60.393 55.000 6.29 0.00 30.45 3.67
2676 2768 0.107703 TCTCCCACGCATAGCTTTGG 60.108 55.000 6.29 0.00 31.69 3.28
2677 2769 1.134699 TCTCTCCCACGCATAGCTTTG 60.135 52.381 0.00 0.00 0.00 2.77
2678 2770 1.195115 TCTCTCCCACGCATAGCTTT 58.805 50.000 0.00 0.00 0.00 3.51
2679 2771 1.195115 TTCTCTCCCACGCATAGCTT 58.805 50.000 0.00 0.00 0.00 3.74
2680 2772 1.195115 TTTCTCTCCCACGCATAGCT 58.805 50.000 0.00 0.00 0.00 3.32
2681 2773 2.024176 TTTTCTCTCCCACGCATAGC 57.976 50.000 0.00 0.00 0.00 2.97
2707 2799 4.417506 TGATTGCAAATCTGATCGCTTTG 58.582 39.130 1.71 9.06 33.12 2.77
2708 2800 4.707030 TGATTGCAAATCTGATCGCTTT 57.293 36.364 1.71 1.95 0.00 3.51
2709 2801 4.082625 TGTTGATTGCAAATCTGATCGCTT 60.083 37.500 1.71 2.23 35.42 4.68
2710 2802 3.441222 TGTTGATTGCAAATCTGATCGCT 59.559 39.130 1.71 0.00 35.42 4.93
2711 2803 3.761657 TGTTGATTGCAAATCTGATCGC 58.238 40.909 1.71 5.35 35.42 4.58
2712 2804 5.860182 AGTTTGTTGATTGCAAATCTGATCG 59.140 36.000 1.71 0.00 38.00 3.69
2713 2805 7.809331 TGTAGTTTGTTGATTGCAAATCTGATC 59.191 33.333 1.71 0.00 38.00 2.92
2714 2806 7.660112 TGTAGTTTGTTGATTGCAAATCTGAT 58.340 30.769 1.71 0.00 38.00 2.90
2715 2807 7.036996 TGTAGTTTGTTGATTGCAAATCTGA 57.963 32.000 1.71 0.00 38.00 3.27
2716 2808 7.697352 TTGTAGTTTGTTGATTGCAAATCTG 57.303 32.000 1.71 0.00 38.00 2.90
2717 2809 8.603181 GTTTTGTAGTTTGTTGATTGCAAATCT 58.397 29.630 1.71 0.00 38.00 2.40
2718 2810 8.386606 TGTTTTGTAGTTTGTTGATTGCAAATC 58.613 29.630 1.71 2.50 38.00 2.17
2719 2811 8.261492 TGTTTTGTAGTTTGTTGATTGCAAAT 57.739 26.923 1.71 0.00 38.00 2.32
2720 2812 7.658179 TGTTTTGTAGTTTGTTGATTGCAAA 57.342 28.000 1.71 0.00 35.42 3.68
2721 2813 7.658179 TTGTTTTGTAGTTTGTTGATTGCAA 57.342 28.000 0.00 0.00 0.00 4.08
2722 2814 7.547019 TCATTGTTTTGTAGTTTGTTGATTGCA 59.453 29.630 0.00 0.00 0.00 4.08
2723 2815 7.845622 GTCATTGTTTTGTAGTTTGTTGATTGC 59.154 33.333 0.00 0.00 0.00 3.56
2724 2816 8.327429 GGTCATTGTTTTGTAGTTTGTTGATTG 58.673 33.333 0.00 0.00 0.00 2.67
2725 2817 8.037758 TGGTCATTGTTTTGTAGTTTGTTGATT 58.962 29.630 0.00 0.00 0.00 2.57
2726 2818 7.551585 TGGTCATTGTTTTGTAGTTTGTTGAT 58.448 30.769 0.00 0.00 0.00 2.57
2727 2819 6.925211 TGGTCATTGTTTTGTAGTTTGTTGA 58.075 32.000 0.00 0.00 0.00 3.18
2728 2820 7.769272 ATGGTCATTGTTTTGTAGTTTGTTG 57.231 32.000 0.00 0.00 0.00 3.33
2729 2821 9.691362 GATATGGTCATTGTTTTGTAGTTTGTT 57.309 29.630 0.00 0.00 0.00 2.83
2730 2822 8.303876 GGATATGGTCATTGTTTTGTAGTTTGT 58.696 33.333 0.00 0.00 0.00 2.83
2731 2823 7.484641 CGGATATGGTCATTGTTTTGTAGTTTG 59.515 37.037 0.00 0.00 0.00 2.93
2732 2824 7.535139 CGGATATGGTCATTGTTTTGTAGTTT 58.465 34.615 0.00 0.00 0.00 2.66
2733 2825 6.404293 GCGGATATGGTCATTGTTTTGTAGTT 60.404 38.462 0.00 0.00 0.00 2.24
2734 2826 5.065988 GCGGATATGGTCATTGTTTTGTAGT 59.934 40.000 0.00 0.00 0.00 2.73
2735 2827 5.065859 TGCGGATATGGTCATTGTTTTGTAG 59.934 40.000 0.00 0.00 0.00 2.74
2736 2828 4.944317 TGCGGATATGGTCATTGTTTTGTA 59.056 37.500 0.00 0.00 0.00 2.41
2737 2829 3.761218 TGCGGATATGGTCATTGTTTTGT 59.239 39.130 0.00 0.00 0.00 2.83
2738 2830 4.104776 GTGCGGATATGGTCATTGTTTTG 58.895 43.478 0.00 0.00 0.00 2.44
2739 2831 3.130340 GGTGCGGATATGGTCATTGTTTT 59.870 43.478 0.00 0.00 0.00 2.43
2740 2832 2.687935 GGTGCGGATATGGTCATTGTTT 59.312 45.455 0.00 0.00 0.00 2.83
2741 2833 2.297701 GGTGCGGATATGGTCATTGTT 58.702 47.619 0.00 0.00 0.00 2.83
2742 2834 1.211703 TGGTGCGGATATGGTCATTGT 59.788 47.619 0.00 0.00 0.00 2.71
2743 2835 1.965935 TGGTGCGGATATGGTCATTG 58.034 50.000 0.00 0.00 0.00 2.82
2744 2836 2.297701 GTTGGTGCGGATATGGTCATT 58.702 47.619 0.00 0.00 0.00 2.57
2745 2837 1.476833 GGTTGGTGCGGATATGGTCAT 60.477 52.381 0.00 0.00 0.00 3.06
2746 2838 0.107410 GGTTGGTGCGGATATGGTCA 60.107 55.000 0.00 0.00 0.00 4.02
2747 2839 0.107410 TGGTTGGTGCGGATATGGTC 60.107 55.000 0.00 0.00 0.00 4.02
2748 2840 0.550914 ATGGTTGGTGCGGATATGGT 59.449 50.000 0.00 0.00 0.00 3.55
2749 2841 0.953727 CATGGTTGGTGCGGATATGG 59.046 55.000 0.00 0.00 0.00 2.74
2750 2842 1.603802 GACATGGTTGGTGCGGATATG 59.396 52.381 0.00 0.00 0.00 1.78
2751 2843 1.211703 TGACATGGTTGGTGCGGATAT 59.788 47.619 0.00 0.00 0.00 1.63
2752 2844 0.615850 TGACATGGTTGGTGCGGATA 59.384 50.000 0.00 0.00 0.00 2.59
2753 2845 0.034186 ATGACATGGTTGGTGCGGAT 60.034 50.000 0.00 0.00 0.00 4.18
2754 2846 0.959867 CATGACATGGTTGGTGCGGA 60.960 55.000 7.60 0.00 0.00 5.54
2755 2847 0.959867 TCATGACATGGTTGGTGCGG 60.960 55.000 15.37 0.00 0.00 5.69
2756 2848 0.168788 GTCATGACATGGTTGGTGCG 59.831 55.000 21.07 0.00 0.00 5.34
2757 2849 1.068333 GTGTCATGACATGGTTGGTGC 60.068 52.381 30.10 11.26 43.97 5.01
2758 2850 1.541147 GGTGTCATGACATGGTTGGTG 59.459 52.381 30.10 0.00 43.97 4.17
2759 2851 1.144708 TGGTGTCATGACATGGTTGGT 59.855 47.619 30.10 0.00 43.97 3.67
2760 2852 1.541147 GTGGTGTCATGACATGGTTGG 59.459 52.381 30.10 0.00 43.97 3.77
2761 2853 2.227149 CAGTGGTGTCATGACATGGTTG 59.773 50.000 30.10 20.99 43.97 3.77
2762 2854 2.507484 CAGTGGTGTCATGACATGGTT 58.493 47.619 30.10 14.53 43.97 3.67
2763 2855 1.271543 CCAGTGGTGTCATGACATGGT 60.272 52.381 30.10 13.44 43.97 3.55
2764 2856 1.456296 CCAGTGGTGTCATGACATGG 58.544 55.000 30.10 26.99 43.97 3.66
2765 2857 1.003464 TCCCAGTGGTGTCATGACATG 59.997 52.381 30.10 22.73 43.97 3.21
2766 2858 1.003580 GTCCCAGTGGTGTCATGACAT 59.996 52.381 30.10 12.71 43.97 3.06
2767 2859 0.396435 GTCCCAGTGGTGTCATGACA 59.604 55.000 24.56 24.56 39.32 3.58
2768 2860 0.670546 CGTCCCAGTGGTGTCATGAC 60.671 60.000 19.27 19.27 0.00 3.06
2769 2861 0.830023 TCGTCCCAGTGGTGTCATGA 60.830 55.000 8.74 0.00 0.00 3.07
2770 2862 0.670546 GTCGTCCCAGTGGTGTCATG 60.671 60.000 8.74 0.00 0.00 3.07
2771 2863 1.671742 GTCGTCCCAGTGGTGTCAT 59.328 57.895 8.74 0.00 0.00 3.06
2772 2864 2.852180 CGTCGTCCCAGTGGTGTCA 61.852 63.158 8.74 0.00 0.00 3.58
2773 2865 2.049433 CGTCGTCCCAGTGGTGTC 60.049 66.667 8.74 0.00 0.00 3.67
2774 2866 3.612681 CCGTCGTCCCAGTGGTGT 61.613 66.667 8.74 0.00 0.00 4.16
2775 2867 4.373116 CCCGTCGTCCCAGTGGTG 62.373 72.222 8.74 0.00 0.00 4.17
2778 2870 4.065281 GACCCCGTCGTCCCAGTG 62.065 72.222 0.00 0.00 0.00 3.66
2784 2876 1.373873 GTTGAAGGACCCCGTCGTC 60.374 63.158 0.00 0.00 34.82 4.20
2785 2877 2.095978 CTGTTGAAGGACCCCGTCGT 62.096 60.000 0.00 0.00 34.82 4.34
2786 2878 1.374252 CTGTTGAAGGACCCCGTCG 60.374 63.158 0.00 0.00 34.82 5.12
2787 2879 1.671379 GCTGTTGAAGGACCCCGTC 60.671 63.158 0.00 0.00 32.76 4.79
2788 2880 1.990160 TTGCTGTTGAAGGACCCCGT 61.990 55.000 0.00 0.00 0.00 5.28
2789 2881 1.228124 TTGCTGTTGAAGGACCCCG 60.228 57.895 0.00 0.00 0.00 5.73
2790 2882 1.515521 CGTTGCTGTTGAAGGACCCC 61.516 60.000 0.00 0.00 0.00 4.95
2791 2883 1.949257 CGTTGCTGTTGAAGGACCC 59.051 57.895 0.00 0.00 0.00 4.46
2792 2884 1.282875 GCGTTGCTGTTGAAGGACC 59.717 57.895 0.00 0.00 0.00 4.46
2793 2885 1.166531 AGGCGTTGCTGTTGAAGGAC 61.167 55.000 0.00 0.00 0.00 3.85
2794 2886 0.465460 AAGGCGTTGCTGTTGAAGGA 60.465 50.000 0.00 0.00 0.00 3.36
2795 2887 0.040067 GAAGGCGTTGCTGTTGAAGG 60.040 55.000 0.00 0.00 0.00 3.46
2796 2888 0.662619 TGAAGGCGTTGCTGTTGAAG 59.337 50.000 0.00 0.00 0.00 3.02
2797 2889 0.662619 CTGAAGGCGTTGCTGTTGAA 59.337 50.000 0.00 0.00 0.00 2.69
2798 2890 1.165907 CCTGAAGGCGTTGCTGTTGA 61.166 55.000 0.00 0.00 0.00 3.18
2799 2891 1.165907 TCCTGAAGGCGTTGCTGTTG 61.166 55.000 0.00 0.00 34.44 3.33
2800 2892 0.465460 TTCCTGAAGGCGTTGCTGTT 60.465 50.000 0.00 0.00 34.44 3.16
2801 2893 0.886490 CTTCCTGAAGGCGTTGCTGT 60.886 55.000 0.00 0.00 34.87 4.40
2802 2894 1.871772 CTTCCTGAAGGCGTTGCTG 59.128 57.895 0.00 0.00 34.87 4.41
2803 2895 4.386413 CTTCCTGAAGGCGTTGCT 57.614 55.556 0.00 0.00 34.87 3.91
2811 2903 1.301677 GCGTTGCTCCCTTCCTGAAG 61.302 60.000 0.00 0.00 38.14 3.02
2812 2904 1.302511 GCGTTGCTCCCTTCCTGAA 60.303 57.895 0.00 0.00 0.00 3.02
2813 2905 2.217038 AGCGTTGCTCCCTTCCTGA 61.217 57.895 0.00 0.00 30.62 3.86
2814 2906 2.348998 AGCGTTGCTCCCTTCCTG 59.651 61.111 0.00 0.00 30.62 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.