Multiple sequence alignment - TraesCS4B01G038900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G038900 chr4B 100.000 3380 0 0 1 3380 27864711 27868090 0.000000e+00 6242.0
1 TraesCS4B01G038900 chr4A 89.187 2423 165 41 776 3162 584537450 584539811 0.000000e+00 2933.0
2 TraesCS4B01G038900 chr4D 88.636 2244 160 43 776 2974 16020530 16022723 0.000000e+00 2643.0
3 TraesCS4B01G038900 chr4D 90.909 198 14 4 2967 3162 16023564 16023759 2.590000e-66 263.0
4 TraesCS4B01G038900 chr4D 92.814 167 12 0 3214 3380 16023852 16024018 3.370000e-60 243.0
5 TraesCS4B01G038900 chr1A 89.922 1032 66 21 1333 2360 52533418 52532421 0.000000e+00 1295.0
6 TraesCS4B01G038900 chr1A 85.229 765 74 24 2423 3162 52532398 52531648 0.000000e+00 750.0
7 TraesCS4B01G038900 chr1A 82.397 267 37 9 415 677 498585956 498586216 1.220000e-54 224.0
8 TraesCS4B01G038900 chr1A 92.857 140 10 0 3216 3355 52531555 52531416 1.590000e-48 204.0
9 TraesCS4B01G038900 chr1A 92.063 63 5 0 685 747 498586276 498586338 4.650000e-14 89.8
10 TraesCS4B01G038900 chr2A 88.201 1034 71 19 1333 2357 16327085 16328076 0.000000e+00 1186.0
11 TraesCS4B01G038900 chr2A 85.750 400 26 5 375 745 40485435 40485038 8.790000e-106 394.0
12 TraesCS4B01G038900 chr2A 86.034 358 28 11 2421 2764 16328108 16328457 6.890000e-97 364.0
13 TraesCS4B01G038900 chr2A 79.126 206 31 12 428 629 6079725 6079922 7.610000e-27 132.0
14 TraesCS4B01G038900 chr2A 90.588 85 8 0 289 373 40485836 40485752 2.760000e-21 113.0
15 TraesCS4B01G038900 chr2D 91.722 302 18 5 375 674 32993642 32993938 2.430000e-111 412.0
16 TraesCS4B01G038900 chr5A 88.889 306 24 9 369 670 412512973 412512674 5.330000e-98 368.0
17 TraesCS4B01G038900 chr1D 90.217 276 23 4 401 674 356283404 356283131 1.150000e-94 357.0
18 TraesCS4B01G038900 chr1D 85.185 243 24 9 2573 2804 24412482 24412723 4.360000e-59 239.0
19 TraesCS4B01G038900 chr7D 86.688 308 32 7 372 674 497930118 497929815 1.940000e-87 333.0
20 TraesCS4B01G038900 chr7D 78.824 170 27 8 504 671 165478196 165478358 4.610000e-19 106.0
21 TraesCS4B01G038900 chr7D 91.489 47 4 0 693 739 45830465 45830419 7.830000e-07 65.8
22 TraesCS4B01G038900 chr6B 85.535 159 19 4 512 670 290675097 290675251 2.700000e-36 163.0
23 TraesCS4B01G038900 chr6B 82.292 192 25 7 482 670 290647339 290647524 1.260000e-34 158.0
24 TraesCS4B01G038900 chr5B 76.744 258 38 14 429 669 704094149 704094401 1.270000e-24 124.0
25 TraesCS4B01G038900 chr5B 90.741 54 5 0 693 746 658548486 658548433 4.680000e-09 73.1
26 TraesCS4B01G038900 chr6A 90.476 84 7 1 286 369 605476887 605476969 3.570000e-20 110.0
27 TraesCS4B01G038900 chr7B 84.000 100 14 2 571 670 516505247 516505344 9.980000e-16 95.3
28 TraesCS4B01G038900 chr3A 88.732 71 8 0 686 756 739148712 739148642 1.670000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G038900 chr4B 27864711 27868090 3379 False 6242.000000 6242 100.000000 1 3380 1 chr4B.!!$F1 3379
1 TraesCS4B01G038900 chr4A 584537450 584539811 2361 False 2933.000000 2933 89.187000 776 3162 1 chr4A.!!$F1 2386
2 TraesCS4B01G038900 chr4D 16020530 16024018 3488 False 1049.666667 2643 90.786333 776 3380 3 chr4D.!!$F1 2604
3 TraesCS4B01G038900 chr1A 52531416 52533418 2002 True 749.666667 1295 89.336000 1333 3355 3 chr1A.!!$R1 2022
4 TraesCS4B01G038900 chr2A 16327085 16328457 1372 False 775.000000 1186 87.117500 1333 2764 2 chr2A.!!$F2 1431
5 TraesCS4B01G038900 chr2A 40485038 40485836 798 True 253.500000 394 88.169000 289 745 2 chr2A.!!$R1 456

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
341 342 0.039074 GCTCGTATCCACCATCTCCG 60.039 60.0 0.0 0.0 0.00 4.63 F
1075 1435 0.318275 GACCATCGACTCCGCAGATC 60.318 60.0 0.0 0.0 35.37 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1931 2300 0.322975 ATCGCCATCCTGATGTAGGC 59.677 55.0 6.4 0.0 46.87 3.93 R
2473 2864 0.532862 CGTTCAGGAGCACACCAAGT 60.533 55.0 0.0 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.068234 TGAGGTTGTTCGTACAAGGATAG 57.932 43.478 7.95 0.00 44.53 2.08
23 24 4.525487 TGAGGTTGTTCGTACAAGGATAGT 59.475 41.667 7.95 0.00 44.53 2.12
24 25 5.011329 TGAGGTTGTTCGTACAAGGATAGTT 59.989 40.000 7.95 0.00 44.53 2.24
25 26 5.861727 AGGTTGTTCGTACAAGGATAGTTT 58.138 37.500 7.95 0.00 44.53 2.66
26 27 5.699458 AGGTTGTTCGTACAAGGATAGTTTG 59.301 40.000 7.95 0.00 44.53 2.93
27 28 5.379827 GTTGTTCGTACAAGGATAGTTTGC 58.620 41.667 7.95 0.00 44.53 3.68
28 29 4.890088 TGTTCGTACAAGGATAGTTTGCT 58.110 39.130 0.00 0.00 0.00 3.91
29 30 4.688879 TGTTCGTACAAGGATAGTTTGCTG 59.311 41.667 0.00 0.00 0.00 4.41
30 31 3.259064 TCGTACAAGGATAGTTTGCTGC 58.741 45.455 0.00 0.00 0.00 5.25
31 32 2.029244 CGTACAAGGATAGTTTGCTGCG 59.971 50.000 0.00 0.00 0.00 5.18
32 33 2.472695 ACAAGGATAGTTTGCTGCGA 57.527 45.000 0.00 0.00 0.00 5.10
33 34 2.350522 ACAAGGATAGTTTGCTGCGAG 58.649 47.619 0.00 0.00 0.00 5.03
34 35 2.289694 ACAAGGATAGTTTGCTGCGAGT 60.290 45.455 0.00 0.00 0.00 4.18
35 36 2.744202 CAAGGATAGTTTGCTGCGAGTT 59.256 45.455 0.00 0.00 0.00 3.01
36 37 3.059352 AGGATAGTTTGCTGCGAGTTT 57.941 42.857 0.00 0.00 0.00 2.66
37 38 3.412386 AGGATAGTTTGCTGCGAGTTTT 58.588 40.909 0.00 0.00 0.00 2.43
38 39 3.821033 AGGATAGTTTGCTGCGAGTTTTT 59.179 39.130 0.00 0.00 0.00 1.94
39 40 4.083271 AGGATAGTTTGCTGCGAGTTTTTC 60.083 41.667 0.00 0.00 0.00 2.29
40 41 4.320202 GGATAGTTTGCTGCGAGTTTTTCA 60.320 41.667 0.00 0.00 0.00 2.69
41 42 3.715628 AGTTTGCTGCGAGTTTTTCAT 57.284 38.095 0.00 0.00 0.00 2.57
42 43 4.045636 AGTTTGCTGCGAGTTTTTCATT 57.954 36.364 0.00 0.00 0.00 2.57
43 44 3.798337 AGTTTGCTGCGAGTTTTTCATTG 59.202 39.130 0.00 0.00 0.00 2.82
44 45 2.420628 TGCTGCGAGTTTTTCATTGG 57.579 45.000 0.00 0.00 0.00 3.16
45 46 1.952990 TGCTGCGAGTTTTTCATTGGA 59.047 42.857 0.00 0.00 0.00 3.53
46 47 2.030893 TGCTGCGAGTTTTTCATTGGAG 60.031 45.455 0.00 0.00 0.00 3.86
47 48 2.589014 CTGCGAGTTTTTCATTGGAGC 58.411 47.619 0.00 0.00 0.00 4.70
48 49 1.269448 TGCGAGTTTTTCATTGGAGCC 59.731 47.619 0.00 0.00 0.00 4.70
49 50 1.269448 GCGAGTTTTTCATTGGAGCCA 59.731 47.619 0.00 0.00 0.00 4.75
50 51 2.922335 GCGAGTTTTTCATTGGAGCCAC 60.922 50.000 0.00 0.00 0.00 5.01
51 52 2.665519 CGAGTTTTTCATTGGAGCCACG 60.666 50.000 0.00 0.00 0.00 4.94
52 53 2.552315 GAGTTTTTCATTGGAGCCACGA 59.448 45.455 0.00 0.00 0.00 4.35
53 54 3.157087 AGTTTTTCATTGGAGCCACGAT 58.843 40.909 0.00 0.00 0.00 3.73
54 55 3.057315 AGTTTTTCATTGGAGCCACGATG 60.057 43.478 0.00 0.13 34.24 3.84
55 56 2.488204 TTTCATTGGAGCCACGATGA 57.512 45.000 4.49 4.49 39.02 2.92
56 57 2.488204 TTCATTGGAGCCACGATGAA 57.512 45.000 13.94 13.94 44.79 2.57
57 58 2.488204 TCATTGGAGCCACGATGAAA 57.512 45.000 5.85 0.00 38.10 2.69
58 59 2.789213 TCATTGGAGCCACGATGAAAA 58.211 42.857 5.85 0.00 38.10 2.29
59 60 2.749076 TCATTGGAGCCACGATGAAAAG 59.251 45.455 5.85 0.00 38.10 2.27
60 61 2.270352 TTGGAGCCACGATGAAAAGT 57.730 45.000 0.00 0.00 0.00 2.66
61 62 3.410631 TTGGAGCCACGATGAAAAGTA 57.589 42.857 0.00 0.00 0.00 2.24
62 63 3.410631 TGGAGCCACGATGAAAAGTAA 57.589 42.857 0.00 0.00 0.00 2.24
63 64 3.745799 TGGAGCCACGATGAAAAGTAAA 58.254 40.909 0.00 0.00 0.00 2.01
64 65 4.138290 TGGAGCCACGATGAAAAGTAAAA 58.862 39.130 0.00 0.00 0.00 1.52
65 66 4.580995 TGGAGCCACGATGAAAAGTAAAAA 59.419 37.500 0.00 0.00 0.00 1.94
96 97 9.820229 ATGTAAAATATGTTGTTACTGTCAACG 57.180 29.630 7.57 0.00 45.33 4.10
97 98 9.043079 TGTAAAATATGTTGTTACTGTCAACGA 57.957 29.630 7.57 0.59 45.33 3.85
98 99 9.525007 GTAAAATATGTTGTTACTGTCAACGAG 57.475 33.333 7.57 0.00 45.33 4.18
99 100 7.724305 AAATATGTTGTTACTGTCAACGAGT 57.276 32.000 7.57 0.00 45.33 4.18
100 101 7.724305 AATATGTTGTTACTGTCAACGAGTT 57.276 32.000 7.57 1.30 45.33 3.01
101 102 5.652744 ATGTTGTTACTGTCAACGAGTTC 57.347 39.130 7.57 0.00 45.33 3.01
102 103 4.496360 TGTTGTTACTGTCAACGAGTTCA 58.504 39.130 7.57 0.00 45.33 3.18
103 104 4.930405 TGTTGTTACTGTCAACGAGTTCAA 59.070 37.500 7.57 0.00 45.33 2.69
104 105 5.408909 TGTTGTTACTGTCAACGAGTTCAAA 59.591 36.000 7.57 0.00 45.33 2.69
105 106 5.459110 TGTTACTGTCAACGAGTTCAAAC 57.541 39.130 0.00 0.00 0.00 2.93
106 107 4.930405 TGTTACTGTCAACGAGTTCAAACA 59.070 37.500 0.00 0.00 0.00 2.83
107 108 5.062934 TGTTACTGTCAACGAGTTCAAACAG 59.937 40.000 15.34 15.34 0.00 3.16
108 109 3.857052 ACTGTCAACGAGTTCAAACAGA 58.143 40.909 20.21 0.43 0.00 3.41
109 110 4.442706 ACTGTCAACGAGTTCAAACAGAT 58.557 39.130 20.21 9.04 0.00 2.90
110 111 4.876107 ACTGTCAACGAGTTCAAACAGATT 59.124 37.500 20.21 5.49 0.00 2.40
111 112 5.354234 ACTGTCAACGAGTTCAAACAGATTT 59.646 36.000 20.21 5.01 0.00 2.17
112 113 5.568482 TGTCAACGAGTTCAAACAGATTTG 58.432 37.500 0.00 0.00 45.67 2.32
153 154 9.612066 TGTATTGATATCTCTTTTATGTGTGCA 57.388 29.630 3.98 0.00 0.00 4.57
156 157 7.500720 TGATATCTCTTTTATGTGTGCATGG 57.499 36.000 3.98 0.00 36.58 3.66
157 158 7.056006 TGATATCTCTTTTATGTGTGCATGGT 58.944 34.615 3.98 0.00 36.58 3.55
158 159 7.557358 TGATATCTCTTTTATGTGTGCATGGTT 59.443 33.333 3.98 0.00 36.58 3.67
159 160 5.627499 TCTCTTTTATGTGTGCATGGTTC 57.373 39.130 0.00 0.00 36.58 3.62
160 161 5.069318 TCTCTTTTATGTGTGCATGGTTCA 58.931 37.500 0.00 0.00 36.58 3.18
161 162 5.534278 TCTCTTTTATGTGTGCATGGTTCAA 59.466 36.000 0.00 0.00 36.58 2.69
162 163 6.209192 TCTCTTTTATGTGTGCATGGTTCAAT 59.791 34.615 0.00 0.00 36.58 2.57
163 164 6.757237 TCTTTTATGTGTGCATGGTTCAATT 58.243 32.000 0.00 0.00 36.58 2.32
164 165 7.215789 TCTTTTATGTGTGCATGGTTCAATTT 58.784 30.769 0.00 0.00 36.58 1.82
165 166 7.714377 TCTTTTATGTGTGCATGGTTCAATTTT 59.286 29.630 0.00 0.00 36.58 1.82
166 167 7.798596 TTTATGTGTGCATGGTTCAATTTTT 57.201 28.000 0.00 0.00 36.58 1.94
167 168 5.927954 ATGTGTGCATGGTTCAATTTTTC 57.072 34.783 0.00 0.00 33.37 2.29
168 169 3.801050 TGTGTGCATGGTTCAATTTTTCG 59.199 39.130 0.00 0.00 0.00 3.46
169 170 4.047822 GTGTGCATGGTTCAATTTTTCGA 58.952 39.130 0.00 0.00 0.00 3.71
170 171 4.047822 TGTGCATGGTTCAATTTTTCGAC 58.952 39.130 0.00 0.00 0.00 4.20
171 172 3.428534 GTGCATGGTTCAATTTTTCGACC 59.571 43.478 0.00 0.00 0.00 4.79
172 173 3.320541 TGCATGGTTCAATTTTTCGACCT 59.679 39.130 0.00 0.00 0.00 3.85
173 174 4.520874 TGCATGGTTCAATTTTTCGACCTA 59.479 37.500 0.00 0.00 0.00 3.08
174 175 5.010112 TGCATGGTTCAATTTTTCGACCTAA 59.990 36.000 0.00 0.00 0.00 2.69
175 176 6.099341 GCATGGTTCAATTTTTCGACCTAAT 58.901 36.000 0.00 0.00 0.00 1.73
176 177 6.034898 GCATGGTTCAATTTTTCGACCTAATG 59.965 38.462 0.00 0.00 0.00 1.90
177 178 6.642707 TGGTTCAATTTTTCGACCTAATGT 57.357 33.333 0.00 0.00 0.00 2.71
178 179 7.747155 TGGTTCAATTTTTCGACCTAATGTA 57.253 32.000 0.00 0.00 0.00 2.29
179 180 8.167605 TGGTTCAATTTTTCGACCTAATGTAA 57.832 30.769 0.00 0.00 0.00 2.41
180 181 8.798402 TGGTTCAATTTTTCGACCTAATGTAAT 58.202 29.630 0.00 0.00 0.00 1.89
181 182 9.634163 GGTTCAATTTTTCGACCTAATGTAATT 57.366 29.630 0.00 0.00 41.28 1.40
218 219 8.882415 TTATTAAGACTGCCTAAAGAATACCG 57.118 34.615 0.00 0.00 0.00 4.02
219 220 4.820894 AAGACTGCCTAAAGAATACCGT 57.179 40.909 0.00 0.00 0.00 4.83
220 221 4.124851 AGACTGCCTAAAGAATACCGTG 57.875 45.455 0.00 0.00 0.00 4.94
221 222 3.514309 AGACTGCCTAAAGAATACCGTGT 59.486 43.478 0.00 0.00 0.00 4.49
222 223 3.596214 ACTGCCTAAAGAATACCGTGTG 58.404 45.455 0.00 0.00 0.00 3.82
223 224 3.007614 ACTGCCTAAAGAATACCGTGTGT 59.992 43.478 0.00 0.00 0.00 3.72
224 225 3.331150 TGCCTAAAGAATACCGTGTGTG 58.669 45.455 0.00 0.00 0.00 3.82
225 226 3.244284 TGCCTAAAGAATACCGTGTGTGT 60.244 43.478 0.00 0.00 0.00 3.72
226 227 3.370061 GCCTAAAGAATACCGTGTGTGTC 59.630 47.826 0.00 0.00 0.00 3.67
227 228 4.562082 CCTAAAGAATACCGTGTGTGTCA 58.438 43.478 0.00 0.00 0.00 3.58
228 229 5.175859 CCTAAAGAATACCGTGTGTGTCAT 58.824 41.667 0.00 0.00 0.00 3.06
229 230 5.642063 CCTAAAGAATACCGTGTGTGTCATT 59.358 40.000 0.00 0.00 0.00 2.57
230 231 6.814644 CCTAAAGAATACCGTGTGTGTCATTA 59.185 38.462 0.00 0.00 0.00 1.90
231 232 7.494625 CCTAAAGAATACCGTGTGTGTCATTAT 59.505 37.037 0.00 0.00 0.00 1.28
232 233 7.681939 AAAGAATACCGTGTGTGTCATTATT 57.318 32.000 0.00 0.00 0.00 1.40
233 234 7.681939 AAGAATACCGTGTGTGTCATTATTT 57.318 32.000 0.00 0.00 0.00 1.40
234 235 7.303634 AGAATACCGTGTGTGTCATTATTTC 57.696 36.000 0.00 0.00 0.00 2.17
235 236 6.876789 AGAATACCGTGTGTGTCATTATTTCA 59.123 34.615 0.00 0.00 0.00 2.69
236 237 7.552687 AGAATACCGTGTGTGTCATTATTTCAT 59.447 33.333 0.00 0.00 0.00 2.57
237 238 5.295431 ACCGTGTGTGTCATTATTTCATG 57.705 39.130 0.00 0.00 0.00 3.07
238 239 5.000591 ACCGTGTGTGTCATTATTTCATGA 58.999 37.500 0.00 0.00 0.00 3.07
239 240 5.471797 ACCGTGTGTGTCATTATTTCATGAA 59.528 36.000 3.38 3.38 34.89 2.57
240 241 6.016693 ACCGTGTGTGTCATTATTTCATGAAA 60.017 34.615 22.52 22.52 34.89 2.69
241 242 6.305399 CCGTGTGTGTCATTATTTCATGAAAC 59.695 38.462 22.71 10.56 40.59 2.78
242 243 7.077605 CGTGTGTGTCATTATTTCATGAAACT 58.922 34.615 22.71 13.98 40.74 2.66
243 244 8.227119 CGTGTGTGTCATTATTTCATGAAACTA 58.773 33.333 22.71 13.76 40.74 2.24
244 245 9.329913 GTGTGTGTCATTATTTCATGAAACTAC 57.670 33.333 22.71 15.41 40.74 2.73
245 246 9.061435 TGTGTGTCATTATTTCATGAAACTACA 57.939 29.630 22.71 17.44 40.74 2.74
246 247 9.329913 GTGTGTCATTATTTCATGAAACTACAC 57.670 33.333 26.57 26.57 40.74 2.90
247 248 9.061435 TGTGTCATTATTTCATGAAACTACACA 57.939 29.630 29.09 29.09 40.74 3.72
248 249 9.891828 GTGTCATTATTTCATGAAACTACACAA 57.108 29.630 27.37 16.53 38.10 3.33
250 251 9.065871 GTCATTATTTCATGAAACTACACAAGC 57.934 33.333 22.71 5.13 34.89 4.01
251 252 7.962373 TCATTATTTCATGAAACTACACAAGCG 59.038 33.333 22.71 4.40 32.51 4.68
252 253 5.940192 ATTTCATGAAACTACACAAGCGA 57.060 34.783 22.71 0.00 32.51 4.93
253 254 4.990543 TTCATGAAACTACACAAGCGAG 57.009 40.909 5.45 0.00 0.00 5.03
254 255 3.990092 TCATGAAACTACACAAGCGAGT 58.010 40.909 0.00 0.00 0.00 4.18
255 256 5.128992 TCATGAAACTACACAAGCGAGTA 57.871 39.130 0.00 0.00 0.00 2.59
256 257 5.161358 TCATGAAACTACACAAGCGAGTAG 58.839 41.667 0.00 0.00 40.83 2.57
257 258 4.841443 TGAAACTACACAAGCGAGTAGA 57.159 40.909 12.58 0.00 38.24 2.59
258 259 5.190992 TGAAACTACACAAGCGAGTAGAA 57.809 39.130 12.58 0.00 38.24 2.10
259 260 5.779922 TGAAACTACACAAGCGAGTAGAAT 58.220 37.500 12.58 3.73 38.24 2.40
260 261 6.220930 TGAAACTACACAAGCGAGTAGAATT 58.779 36.000 12.58 8.25 38.24 2.17
261 262 6.365247 TGAAACTACACAAGCGAGTAGAATTC 59.635 38.462 12.58 0.00 38.24 2.17
262 263 4.413087 ACTACACAAGCGAGTAGAATTCG 58.587 43.478 12.58 0.00 38.24 3.34
263 264 3.570926 ACACAAGCGAGTAGAATTCGA 57.429 42.857 0.00 0.00 40.36 3.71
264 265 3.243336 ACACAAGCGAGTAGAATTCGAC 58.757 45.455 10.42 10.42 40.36 4.20
265 266 2.599082 CACAAGCGAGTAGAATTCGACC 59.401 50.000 14.25 6.19 40.36 4.79
266 267 2.230508 ACAAGCGAGTAGAATTCGACCA 59.769 45.455 14.25 0.00 40.36 4.02
267 268 3.119101 ACAAGCGAGTAGAATTCGACCAT 60.119 43.478 14.25 0.00 40.36 3.55
268 269 4.097437 ACAAGCGAGTAGAATTCGACCATA 59.903 41.667 14.25 0.00 40.36 2.74
269 270 5.221263 ACAAGCGAGTAGAATTCGACCATAT 60.221 40.000 14.25 0.00 40.36 1.78
270 271 5.455056 AGCGAGTAGAATTCGACCATATT 57.545 39.130 14.25 0.00 40.36 1.28
271 272 5.844004 AGCGAGTAGAATTCGACCATATTT 58.156 37.500 14.25 0.00 40.36 1.40
272 273 5.692204 AGCGAGTAGAATTCGACCATATTTG 59.308 40.000 14.25 2.25 40.36 2.32
273 274 5.690409 GCGAGTAGAATTCGACCATATTTGA 59.310 40.000 14.25 0.00 40.36 2.69
274 275 6.366332 GCGAGTAGAATTCGACCATATTTGAT 59.634 38.462 14.25 0.00 40.36 2.57
275 276 7.541091 GCGAGTAGAATTCGACCATATTTGATA 59.459 37.037 14.25 0.00 40.36 2.15
276 277 8.851416 CGAGTAGAATTCGACCATATTTGATAC 58.149 37.037 14.25 0.70 40.36 2.24
277 278 9.141400 GAGTAGAATTCGACCATATTTGATACC 57.859 37.037 14.25 0.00 0.00 2.73
278 279 8.095169 AGTAGAATTCGACCATATTTGATACCC 58.905 37.037 14.25 0.00 0.00 3.69
279 280 6.837312 AGAATTCGACCATATTTGATACCCA 58.163 36.000 0.00 0.00 0.00 4.51
280 281 7.287061 AGAATTCGACCATATTTGATACCCAA 58.713 34.615 0.00 0.00 0.00 4.12
282 283 7.889873 ATTCGACCATATTTGATACCCAAAA 57.110 32.000 0.00 0.00 46.64 2.44
283 284 7.889873 TTCGACCATATTTGATACCCAAAAT 57.110 32.000 0.00 0.00 46.64 1.82
284 285 8.982091 TTCGACCATATTTGATACCCAAAATA 57.018 30.769 0.00 0.00 46.64 1.40
285 286 9.581289 TTCGACCATATTTGATACCCAAAATAT 57.419 29.630 0.00 0.00 46.64 1.28
322 323 2.885644 CAACCGGCGGATGAGTCG 60.886 66.667 35.78 4.19 39.19 4.18
341 342 0.039074 GCTCGTATCCACCATCTCCG 60.039 60.000 0.00 0.00 0.00 4.63
349 350 1.003355 CACCATCTCCGTGGCAGTT 60.003 57.895 0.00 0.00 43.27 3.16
350 351 0.606401 CACCATCTCCGTGGCAGTTT 60.606 55.000 0.00 0.00 43.27 2.66
361 362 5.848406 TCCGTGGCAGTTTGATTTAATTTT 58.152 33.333 0.00 0.00 0.00 1.82
400 716 4.803098 ACACTAACGACTAAGAGCCATT 57.197 40.909 0.00 0.00 0.00 3.16
401 717 4.745649 ACACTAACGACTAAGAGCCATTC 58.254 43.478 0.00 0.00 0.00 2.67
404 720 2.563471 ACGACTAAGAGCCATTCGTC 57.437 50.000 0.00 0.00 38.50 4.20
431 747 6.626199 TTTTTCTTCTTTGTTCGTCTTTGC 57.374 33.333 0.00 0.00 0.00 3.68
442 758 3.435105 TCGTCTTTGCAACATGCTTTT 57.565 38.095 0.00 0.00 45.31 2.27
462 778 8.272176 TGCTTTTTGTTGCAAAAATAATCTACG 58.728 29.630 16.74 7.07 36.15 3.51
483 799 6.252967 ACGATATGACATCTGTTGCAAAAA 57.747 33.333 0.00 0.00 0.00 1.94
484 800 6.086222 ACGATATGACATCTGTTGCAAAAAC 58.914 36.000 0.00 0.00 0.00 2.43
493 809 6.919662 ACATCTGTTGCAAAAACAATCTACAG 59.080 34.615 0.00 0.54 34.97 2.74
499 815 7.434897 TGTTGCAAAAACAATCTACAGACATTC 59.565 33.333 0.00 0.00 0.00 2.67
502 818 6.516527 GCAAAAACAATCTACAGACATTCCCA 60.517 38.462 0.00 0.00 0.00 4.37
512 828 2.813754 CAGACATTCCCACAACGTGATT 59.186 45.455 0.00 0.00 35.23 2.57
514 830 3.253188 AGACATTCCCACAACGTGATTTG 59.747 43.478 0.00 0.00 35.23 2.32
516 832 3.383185 ACATTCCCACAACGTGATTTGTT 59.617 39.130 0.00 0.00 37.62 2.83
551 872 7.585579 TTCTGCAATATGATATTTCTGGCAA 57.414 32.000 8.59 0.60 0.00 4.52
553 874 7.428020 TCTGCAATATGATATTTCTGGCAAAC 58.572 34.615 8.59 0.00 0.00 2.93
574 895 4.429108 ACAAAACTCCACAAATGTTTCCG 58.571 39.130 0.00 0.00 33.45 4.30
603 924 8.404000 ACATGATCTCAGTTGCAGAAAATATTC 58.596 33.333 0.00 0.00 35.70 1.75
624 945 7.744087 ATTCTGTAACATAAACTCTGTTGCA 57.256 32.000 6.75 6.75 43.73 4.08
645 966 9.986833 GTTGCAGAAAAATTCTACAAACATTTT 57.013 25.926 7.20 0.00 42.83 1.82
650 971 9.092876 AGAAAAATTCTACAAACATTTTCGCAA 57.907 25.926 0.00 0.00 40.11 4.85
658 979 5.531634 ACAAACATTTTCGCAACATGATCT 58.468 33.333 0.00 0.00 0.00 2.75
674 995 6.694447 ACATGATCTTTGTTGCAAAAGCTAT 58.306 32.000 0.00 0.00 37.13 2.97
683 1028 3.513680 TGCAAAAGCTATGCCAGATTG 57.486 42.857 18.62 2.64 43.16 2.67
718 1063 3.380320 CCCGGCCGATCTTTTAAAAAGAT 59.620 43.478 30.73 0.00 39.53 2.40
725 1070 3.481112 TCTTTTAAAAAGATCCGCCGC 57.519 42.857 1.66 0.00 0.00 6.53
757 1102 7.974675 CGTAGCAGTCCCCATAATATAATTTG 58.025 38.462 0.00 0.00 0.00 2.32
758 1103 7.822334 CGTAGCAGTCCCCATAATATAATTTGA 59.178 37.037 0.00 0.00 0.00 2.69
759 1104 8.947115 GTAGCAGTCCCCATAATATAATTTGAC 58.053 37.037 0.00 0.00 0.00 3.18
760 1105 7.526041 AGCAGTCCCCATAATATAATTTGACA 58.474 34.615 0.00 0.00 0.00 3.58
761 1106 8.172741 AGCAGTCCCCATAATATAATTTGACAT 58.827 33.333 0.00 0.00 0.00 3.06
762 1107 8.246180 GCAGTCCCCATAATATAATTTGACATG 58.754 37.037 0.00 0.00 0.00 3.21
763 1108 9.300681 CAGTCCCCATAATATAATTTGACATGT 57.699 33.333 0.00 0.00 0.00 3.21
764 1109 9.881773 AGTCCCCATAATATAATTTGACATGTT 57.118 29.630 0.00 0.00 0.00 2.71
784 1129 4.017126 GTTCTGTATTTTTGCTAGCCCCT 58.983 43.478 13.29 0.00 0.00 4.79
828 1173 3.790437 GCTGCTAGCTGGGCCTCA 61.790 66.667 21.46 0.00 38.45 3.86
942 1289 3.452786 CTCGCTCCTCCGCTTCCA 61.453 66.667 0.00 0.00 0.00 3.53
966 1316 2.272146 GCACCACCACCGATCCAT 59.728 61.111 0.00 0.00 0.00 3.41
974 1324 1.213094 CCACCGATCCATAACGCGAC 61.213 60.000 15.93 0.00 0.00 5.19
1067 1427 3.121019 CGGGAGGACCATCGACTC 58.879 66.667 0.00 0.00 40.22 3.36
1070 1430 2.413765 GAGGACCATCGACTCCGC 59.586 66.667 0.00 0.00 35.37 5.54
1071 1431 2.362503 AGGACCATCGACTCCGCA 60.363 61.111 0.00 0.00 35.37 5.69
1072 1432 2.105128 GGACCATCGACTCCGCAG 59.895 66.667 0.00 0.00 35.37 5.18
1073 1433 2.415608 GGACCATCGACTCCGCAGA 61.416 63.158 0.00 0.00 35.37 4.26
1074 1434 1.736586 GACCATCGACTCCGCAGAT 59.263 57.895 0.00 0.00 35.37 2.90
1075 1435 0.318275 GACCATCGACTCCGCAGATC 60.318 60.000 0.00 0.00 35.37 2.75
1076 1436 1.371022 CCATCGACTCCGCAGATCG 60.371 63.158 0.00 0.00 37.20 3.69
1078 1438 0.658829 CATCGACTCCGCAGATCGAC 60.659 60.000 3.69 0.00 46.68 4.20
1079 1439 1.787057 ATCGACTCCGCAGATCGACC 61.787 60.000 3.69 0.00 46.68 4.79
1080 1440 2.024871 GACTCCGCAGATCGACCG 59.975 66.667 0.00 0.00 41.67 4.79
1081 1441 2.437895 ACTCCGCAGATCGACCGA 60.438 61.111 0.00 0.00 41.67 4.69
1082 1442 2.329690 CTCCGCAGATCGACCGAG 59.670 66.667 0.00 0.00 41.67 4.63
1083 1443 3.815569 CTCCGCAGATCGACCGAGC 62.816 68.421 0.00 0.00 41.67 5.03
1084 1444 4.933064 CCGCAGATCGACCGAGCC 62.933 72.222 3.94 0.00 41.67 4.70
1085 1445 4.193334 CGCAGATCGACCGAGCCA 62.193 66.667 3.94 0.00 41.67 4.75
1086 1446 2.419198 GCAGATCGACCGAGCCAT 59.581 61.111 3.94 0.00 0.00 4.40
1093 1453 0.538746 TCGACCGAGCCATAGCCATA 60.539 55.000 0.00 0.00 41.25 2.74
1244 1604 1.227118 GAGCGCCTCCTACAGAAGC 60.227 63.158 2.29 0.00 0.00 3.86
1247 1607 2.202946 GCCTCCTACAGAAGCGGC 60.203 66.667 0.00 0.00 34.44 6.53
1259 1619 3.322318 AAGCGGCAGAAGGAGGAGC 62.322 63.158 1.45 0.00 0.00 4.70
1375 1738 3.834799 GCGGACGGTTCGAGGGAT 61.835 66.667 14.09 0.00 0.00 3.85
1403 1766 4.075793 TCCCGAGGGAGGAGGTGG 62.076 72.222 6.80 0.00 39.76 4.61
1648 2017 4.148825 AGCGGCGGCGAGAAAGAT 62.149 61.111 36.87 7.77 46.35 2.40
1654 2023 1.209998 GCGGCGAGAAAGATAAGGAC 58.790 55.000 12.98 0.00 0.00 3.85
1660 2029 3.429135 GCGAGAAAGATAAGGACGAGGTT 60.429 47.826 0.00 0.00 0.00 3.50
1738 2107 1.605058 GCGAGTGGAGCCAGGAACTA 61.605 60.000 0.00 0.00 36.02 2.24
1755 2124 1.437772 CTAGACGAGATGCCCGACGT 61.438 60.000 0.00 0.00 41.57 4.34
1828 2197 2.355599 CGCTATCTGGAGCCGCTG 60.356 66.667 0.00 0.00 39.43 5.18
1851 2220 0.767375 AAGCTGTGCAGGAAGAAGGA 59.233 50.000 1.11 0.00 0.00 3.36
1892 2261 4.662961 CGCTGCTGGACGTGGTGA 62.663 66.667 0.00 0.00 0.00 4.02
2062 2431 0.167470 TGATGAACGACGAGACGACC 59.833 55.000 0.00 0.00 37.03 4.79
2110 2485 2.437359 ATGACCTTCTGCCAGCGC 60.437 61.111 0.00 0.00 0.00 5.92
2161 2536 0.250901 AGTTCAACAGCCTCGCCAAT 60.251 50.000 0.00 0.00 0.00 3.16
2247 2631 2.401699 CTGGTGGCTGCCTCTTGACA 62.402 60.000 21.03 8.55 0.00 3.58
2248 2632 1.673665 GGTGGCTGCCTCTTGACAG 60.674 63.158 21.03 0.00 36.96 3.51
2249 2633 1.372683 GTGGCTGCCTCTTGACAGA 59.627 57.895 21.03 0.00 35.90 3.41
2250 2634 0.952984 GTGGCTGCCTCTTGACAGAC 60.953 60.000 21.03 2.01 42.61 3.51
2265 2649 1.819288 ACAGACGACGAATCACCATCT 59.181 47.619 0.00 0.00 0.00 2.90
2280 2664 3.315470 CACCATCTCCAATCTCTGCATTG 59.685 47.826 0.00 0.00 34.06 2.82
2294 2678 4.248859 TCTGCATTGTAGAAGCTCAACTC 58.751 43.478 1.60 0.00 0.00 3.01
2300 2684 4.258702 TGTAGAAGCTCAACTCCAACTC 57.741 45.455 0.00 0.00 0.00 3.01
2303 2687 5.717178 TGTAGAAGCTCAACTCCAACTCTAT 59.283 40.000 0.00 0.00 0.00 1.98
2347 2731 7.077605 TGATTACTGAAAATTGTTCTCTTGCG 58.922 34.615 0.00 0.00 0.00 4.85
2386 2771 4.498894 AATCTGGCTGTGATGATCAAGA 57.501 40.909 0.00 0.00 0.00 3.02
2407 2792 2.846206 ACCTAAAGCCATCCTGATGACA 59.154 45.455 8.69 0.00 41.20 3.58
2410 2795 3.446442 AAAGCCATCCTGATGACAGTT 57.554 42.857 8.69 0.00 42.05 3.16
2416 2801 5.130975 AGCCATCCTGATGACAGTTTGTATA 59.869 40.000 8.69 0.00 42.05 1.47
2471 2862 5.698741 TGGGAGTGTGATGATGATTACTT 57.301 39.130 0.00 0.00 0.00 2.24
2472 2863 6.065976 TGGGAGTGTGATGATGATTACTTT 57.934 37.500 0.00 0.00 0.00 2.66
2473 2864 7.194112 TGGGAGTGTGATGATGATTACTTTA 57.806 36.000 0.00 0.00 0.00 1.85
2474 2865 7.047891 TGGGAGTGTGATGATGATTACTTTAC 58.952 38.462 0.00 0.00 0.00 2.01
2475 2866 7.092891 TGGGAGTGTGATGATGATTACTTTACT 60.093 37.037 0.00 0.00 0.00 2.24
2476 2867 7.770897 GGGAGTGTGATGATGATTACTTTACTT 59.229 37.037 0.00 0.00 0.00 2.24
2477 2868 8.607459 GGAGTGTGATGATGATTACTTTACTTG 58.393 37.037 0.00 0.00 0.00 3.16
2478 2869 8.498054 AGTGTGATGATGATTACTTTACTTGG 57.502 34.615 0.00 0.00 0.00 3.61
2479 2870 8.103305 AGTGTGATGATGATTACTTTACTTGGT 58.897 33.333 0.00 0.00 0.00 3.67
2485 2876 6.371548 TGATGATTACTTTACTTGGTGTGCTC 59.628 38.462 0.00 0.00 0.00 4.26
2532 2928 2.616376 TGTTCTGAAAACCACATGGACG 59.384 45.455 4.53 0.00 38.94 4.79
2586 2982 7.329717 ACTGTGAAACTGCAAATTCGTTTTAAA 59.670 29.630 2.93 0.00 39.67 1.52
2589 2985 9.484326 GTGAAACTGCAAATTCGTTTTAAATTT 57.516 25.926 2.93 0.00 36.91 1.82
2677 3073 3.066369 TCGTCGAGAATAGTCATGTGC 57.934 47.619 0.00 0.00 0.00 4.57
2725 3134 5.817988 ACGAGTGCTCTTAAAAGGTTTTTC 58.182 37.500 0.00 0.00 0.00 2.29
2760 3180 9.500785 TTTTGTCAGTATCATCACACATCTTTA 57.499 29.630 0.00 0.00 0.00 1.85
2775 3195 8.629986 CACACATCTTTACTTCGCTAAAATTTG 58.370 33.333 0.00 0.00 0.00 2.32
2803 3223 8.856490 ACAAGTGTGCTAATTGTAAAAAGAAG 57.144 30.769 5.75 0.00 44.92 2.85
2807 3227 8.135529 AGTGTGCTAATTGTAAAAAGAAGGTTC 58.864 33.333 0.00 0.00 0.00 3.62
2810 3230 9.181805 GTGCTAATTGTAAAAAGAAGGTTCTTC 57.818 33.333 5.45 0.00 46.22 2.87
2811 3231 8.357402 TGCTAATTGTAAAAAGAAGGTTCTTCC 58.643 33.333 5.45 0.00 46.22 3.46
2876 3302 4.067896 ACACTTGAATTTCAGCATCTCGT 58.932 39.130 0.00 0.00 0.00 4.18
2878 3304 5.700832 ACACTTGAATTTCAGCATCTCGTTA 59.299 36.000 0.00 0.00 0.00 3.18
2909 3336 2.432510 TGAAAAACACGGGGAAAATGCT 59.567 40.909 0.00 0.00 0.00 3.79
2912 3339 4.882842 AAAACACGGGGAAAATGCTTAT 57.117 36.364 0.00 0.00 0.00 1.73
2949 3376 7.397192 AGCTTTGGGTCACTATATTCACAAATT 59.603 33.333 0.00 0.00 33.68 1.82
2956 3383 8.328864 GGTCACTATATTCACAAATTCTTCGAC 58.671 37.037 0.00 0.00 0.00 4.20
2963 3390 2.223144 CACAAATTCTTCGACGCTTCCA 59.777 45.455 0.00 0.00 0.00 3.53
2999 4276 2.034687 AAGGTGCCATTGAGCGCT 59.965 55.556 11.27 11.27 42.92 5.92
3012 4289 5.052172 CCATTGAGCGCTAAATTTTCATTCG 60.052 40.000 17.80 3.89 0.00 3.34
3070 4347 5.339530 CCCTCCACCTCAAAGTTATGAAGAT 60.340 44.000 0.00 0.00 0.00 2.40
3071 4348 5.587844 CCTCCACCTCAAAGTTATGAAGATG 59.412 44.000 0.00 0.00 0.00 2.90
3091 4369 4.380843 TGAAACATAGAAGGGCAGGAAA 57.619 40.909 0.00 0.00 0.00 3.13
3109 4387 5.693555 CAGGAAAAATTGCCTTGAGAAGAAC 59.306 40.000 0.00 0.00 30.41 3.01
3116 4394 1.941668 GCCTTGAGAAGAACGGGTGAG 60.942 57.143 0.00 0.00 0.00 3.51
3117 4395 1.433534 CTTGAGAAGAACGGGTGAGC 58.566 55.000 0.00 0.00 0.00 4.26
3119 4397 0.976641 TGAGAAGAACGGGTGAGCAT 59.023 50.000 0.00 0.00 0.00 3.79
3138 4416 9.547753 GTGAGCATAGGTTCTATTCTTGAATTA 57.452 33.333 0.95 0.00 0.00 1.40
3177 4517 6.144402 CACAATTGTGTAAGAAATTGCTGACC 59.856 38.462 27.08 0.00 44.15 4.02
3195 4535 3.309582 GGAGGGCGACATCTCCAA 58.690 61.111 1.57 0.00 46.54 3.53
3196 4536 1.153349 GGAGGGCGACATCTCCAAC 60.153 63.158 1.57 0.00 46.54 3.77
3197 4537 1.617947 GGAGGGCGACATCTCCAACT 61.618 60.000 1.57 0.00 46.54 3.16
3198 4538 0.250513 GAGGGCGACATCTCCAACTT 59.749 55.000 0.00 0.00 38.35 2.66
3199 4539 1.480954 GAGGGCGACATCTCCAACTTA 59.519 52.381 0.00 0.00 38.35 2.24
3200 4540 2.103263 GAGGGCGACATCTCCAACTTAT 59.897 50.000 0.00 0.00 38.35 1.73
3201 4541 3.305720 AGGGCGACATCTCCAACTTATA 58.694 45.455 0.00 0.00 0.00 0.98
3202 4542 3.069729 AGGGCGACATCTCCAACTTATAC 59.930 47.826 0.00 0.00 0.00 1.47
3203 4543 3.069729 GGGCGACATCTCCAACTTATACT 59.930 47.826 0.00 0.00 0.00 2.12
3204 4544 4.443034 GGGCGACATCTCCAACTTATACTT 60.443 45.833 0.00 0.00 0.00 2.24
3205 4545 4.745620 GGCGACATCTCCAACTTATACTTC 59.254 45.833 0.00 0.00 0.00 3.01
3206 4546 5.452077 GGCGACATCTCCAACTTATACTTCT 60.452 44.000 0.00 0.00 0.00 2.85
3207 4547 5.460419 GCGACATCTCCAACTTATACTTCTG 59.540 44.000 0.00 0.00 0.00 3.02
3208 4548 5.460419 CGACATCTCCAACTTATACTTCTGC 59.540 44.000 0.00 0.00 0.00 4.26
3209 4549 5.675538 ACATCTCCAACTTATACTTCTGCC 58.324 41.667 0.00 0.00 0.00 4.85
3210 4550 5.426833 ACATCTCCAACTTATACTTCTGCCT 59.573 40.000 0.00 0.00 0.00 4.75
3211 4551 5.344743 TCTCCAACTTATACTTCTGCCTG 57.655 43.478 0.00 0.00 0.00 4.85
3212 4552 4.777896 TCTCCAACTTATACTTCTGCCTGT 59.222 41.667 0.00 0.00 0.00 4.00
3225 4565 1.212751 GCCTGTTGATGTTTCCCGC 59.787 57.895 0.00 0.00 0.00 6.13
3239 4579 1.747367 CCCGCCGCAACCATCTTTA 60.747 57.895 0.00 0.00 0.00 1.85
3249 4589 4.328440 CGCAACCATCTTTACAAGAGAGAG 59.672 45.833 0.00 0.00 41.61 3.20
3277 4617 7.817418 AACTATGAAGAAAGTAACCTGCAAA 57.183 32.000 0.00 0.00 0.00 3.68
3282 4622 5.299279 TGAAGAAAGTAACCTGCAAAAGAGG 59.701 40.000 0.00 0.00 36.57 3.69
3283 4623 5.048846 AGAAAGTAACCTGCAAAAGAGGA 57.951 39.130 0.00 0.00 34.37 3.71
3325 4665 1.635487 ACAGTACATGACAATGGGCCT 59.365 47.619 4.53 0.00 38.19 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.525487 ACTATCCTTGTACGAACAACCTCA 59.475 41.667 0.00 0.00 40.69 3.86
1 2 5.069501 ACTATCCTTGTACGAACAACCTC 57.930 43.478 0.00 0.00 40.69 3.85
2 3 5.479124 AACTATCCTTGTACGAACAACCT 57.521 39.130 0.00 0.00 40.69 3.50
3 4 5.616204 GCAAACTATCCTTGTACGAACAACC 60.616 44.000 0.00 0.00 40.69 3.77
5 6 5.178623 CAGCAAACTATCCTTGTACGAACAA 59.821 40.000 0.00 0.00 43.32 2.83
6 7 4.688879 CAGCAAACTATCCTTGTACGAACA 59.311 41.667 0.00 0.00 0.00 3.18
7 8 4.435651 GCAGCAAACTATCCTTGTACGAAC 60.436 45.833 0.00 0.00 0.00 3.95
8 9 3.682858 GCAGCAAACTATCCTTGTACGAA 59.317 43.478 0.00 0.00 0.00 3.85
9 10 3.259064 GCAGCAAACTATCCTTGTACGA 58.741 45.455 0.00 0.00 0.00 3.43
10 11 2.029244 CGCAGCAAACTATCCTTGTACG 59.971 50.000 0.00 0.00 0.00 3.67
11 12 3.259064 TCGCAGCAAACTATCCTTGTAC 58.741 45.455 0.00 0.00 0.00 2.90
12 13 3.056107 ACTCGCAGCAAACTATCCTTGTA 60.056 43.478 0.00 0.00 0.00 2.41
13 14 2.289694 ACTCGCAGCAAACTATCCTTGT 60.290 45.455 0.00 0.00 0.00 3.16
14 15 2.350522 ACTCGCAGCAAACTATCCTTG 58.649 47.619 0.00 0.00 0.00 3.61
15 16 2.770164 ACTCGCAGCAAACTATCCTT 57.230 45.000 0.00 0.00 0.00 3.36
16 17 2.770164 AACTCGCAGCAAACTATCCT 57.230 45.000 0.00 0.00 0.00 3.24
17 18 3.831715 AAAACTCGCAGCAAACTATCC 57.168 42.857 0.00 0.00 0.00 2.59
18 19 4.783242 TGAAAAACTCGCAGCAAACTATC 58.217 39.130 0.00 0.00 0.00 2.08
19 20 4.829064 TGAAAAACTCGCAGCAAACTAT 57.171 36.364 0.00 0.00 0.00 2.12
20 21 4.829064 ATGAAAAACTCGCAGCAAACTA 57.171 36.364 0.00 0.00 0.00 2.24
21 22 3.715628 ATGAAAAACTCGCAGCAAACT 57.284 38.095 0.00 0.00 0.00 2.66
22 23 3.060339 CCAATGAAAAACTCGCAGCAAAC 60.060 43.478 0.00 0.00 0.00 2.93
23 24 3.122297 CCAATGAAAAACTCGCAGCAAA 58.878 40.909 0.00 0.00 0.00 3.68
24 25 2.360483 TCCAATGAAAAACTCGCAGCAA 59.640 40.909 0.00 0.00 0.00 3.91
25 26 1.952990 TCCAATGAAAAACTCGCAGCA 59.047 42.857 0.00 0.00 0.00 4.41
26 27 2.589014 CTCCAATGAAAAACTCGCAGC 58.411 47.619 0.00 0.00 0.00 5.25
27 28 2.589014 GCTCCAATGAAAAACTCGCAG 58.411 47.619 0.00 0.00 0.00 5.18
28 29 1.269448 GGCTCCAATGAAAAACTCGCA 59.731 47.619 0.00 0.00 0.00 5.10
29 30 1.269448 TGGCTCCAATGAAAAACTCGC 59.731 47.619 0.00 0.00 0.00 5.03
30 31 2.665519 CGTGGCTCCAATGAAAAACTCG 60.666 50.000 0.00 0.00 0.00 4.18
31 32 2.552315 TCGTGGCTCCAATGAAAAACTC 59.448 45.455 0.00 0.00 0.00 3.01
32 33 2.582052 TCGTGGCTCCAATGAAAAACT 58.418 42.857 0.00 0.00 0.00 2.66
33 34 3.057596 TCATCGTGGCTCCAATGAAAAAC 60.058 43.478 1.80 0.00 0.00 2.43
34 35 3.153130 TCATCGTGGCTCCAATGAAAAA 58.847 40.909 1.80 0.00 0.00 1.94
35 36 2.789213 TCATCGTGGCTCCAATGAAAA 58.211 42.857 1.80 0.00 0.00 2.29
36 37 2.488204 TCATCGTGGCTCCAATGAAA 57.512 45.000 1.80 0.00 0.00 2.69
37 38 2.488204 TTCATCGTGGCTCCAATGAA 57.512 45.000 10.43 10.43 36.16 2.57
38 39 2.488204 TTTCATCGTGGCTCCAATGA 57.512 45.000 0.40 0.40 0.00 2.57
39 40 2.489329 ACTTTTCATCGTGGCTCCAATG 59.511 45.455 0.00 0.00 0.00 2.82
40 41 2.795329 ACTTTTCATCGTGGCTCCAAT 58.205 42.857 0.00 0.00 0.00 3.16
41 42 2.270352 ACTTTTCATCGTGGCTCCAA 57.730 45.000 0.00 0.00 0.00 3.53
42 43 3.410631 TTACTTTTCATCGTGGCTCCA 57.589 42.857 0.00 0.00 0.00 3.86
43 44 4.759516 TTTTACTTTTCATCGTGGCTCC 57.240 40.909 0.00 0.00 0.00 4.70
70 71 9.820229 CGTTGACAGTAACAACATATTTTACAT 57.180 29.630 0.00 0.00 45.09 2.29
71 72 9.043079 TCGTTGACAGTAACAACATATTTTACA 57.957 29.630 0.00 0.00 45.09 2.41
72 73 9.525007 CTCGTTGACAGTAACAACATATTTTAC 57.475 33.333 0.00 0.00 45.09 2.01
73 74 9.263538 ACTCGTTGACAGTAACAACATATTTTA 57.736 29.630 0.00 0.00 45.09 1.52
74 75 8.149973 ACTCGTTGACAGTAACAACATATTTT 57.850 30.769 0.00 0.00 45.09 1.82
75 76 7.724305 ACTCGTTGACAGTAACAACATATTT 57.276 32.000 0.00 0.00 45.09 1.40
76 77 7.439955 TGAACTCGTTGACAGTAACAACATATT 59.560 33.333 0.00 0.00 45.09 1.28
77 78 6.926826 TGAACTCGTTGACAGTAACAACATAT 59.073 34.615 0.00 0.00 45.09 1.78
78 79 6.274579 TGAACTCGTTGACAGTAACAACATA 58.725 36.000 0.00 0.00 45.09 2.29
79 80 5.113383 TGAACTCGTTGACAGTAACAACAT 58.887 37.500 0.00 0.00 45.09 2.71
80 81 4.496360 TGAACTCGTTGACAGTAACAACA 58.504 39.130 0.00 0.00 45.09 3.33
81 82 5.459110 TTGAACTCGTTGACAGTAACAAC 57.541 39.130 0.00 0.00 42.54 3.32
82 83 5.408909 TGTTTGAACTCGTTGACAGTAACAA 59.591 36.000 0.00 0.00 0.00 2.83
83 84 4.930405 TGTTTGAACTCGTTGACAGTAACA 59.070 37.500 0.00 0.00 0.00 2.41
84 85 5.290158 TCTGTTTGAACTCGTTGACAGTAAC 59.710 40.000 12.93 0.00 0.00 2.50
85 86 5.412640 TCTGTTTGAACTCGTTGACAGTAA 58.587 37.500 12.93 0.06 0.00 2.24
86 87 5.001237 TCTGTTTGAACTCGTTGACAGTA 57.999 39.130 12.93 3.68 0.00 2.74
87 88 3.857052 TCTGTTTGAACTCGTTGACAGT 58.143 40.909 12.93 0.00 0.00 3.55
88 89 5.409643 AATCTGTTTGAACTCGTTGACAG 57.590 39.130 9.48 9.48 0.00 3.51
89 90 5.568482 CAAATCTGTTTGAACTCGTTGACA 58.432 37.500 0.00 0.00 46.03 3.58
127 128 9.612066 TGCACACATAAAAGAGATATCAATACA 57.388 29.630 5.32 0.00 0.00 2.29
130 131 8.573885 CCATGCACACATAAAAGAGATATCAAT 58.426 33.333 5.32 0.00 33.67 2.57
131 132 7.557358 ACCATGCACACATAAAAGAGATATCAA 59.443 33.333 5.32 0.00 33.67 2.57
132 133 7.056006 ACCATGCACACATAAAAGAGATATCA 58.944 34.615 5.32 0.00 33.67 2.15
133 134 7.502120 ACCATGCACACATAAAAGAGATATC 57.498 36.000 0.00 0.00 33.67 1.63
134 135 7.557358 TGAACCATGCACACATAAAAGAGATAT 59.443 33.333 0.00 0.00 33.67 1.63
135 136 6.883756 TGAACCATGCACACATAAAAGAGATA 59.116 34.615 0.00 0.00 33.67 1.98
136 137 5.711506 TGAACCATGCACACATAAAAGAGAT 59.288 36.000 0.00 0.00 33.67 2.75
137 138 5.069318 TGAACCATGCACACATAAAAGAGA 58.931 37.500 0.00 0.00 33.67 3.10
138 139 5.375417 TGAACCATGCACACATAAAAGAG 57.625 39.130 0.00 0.00 33.67 2.85
139 140 5.781210 TTGAACCATGCACACATAAAAGA 57.219 34.783 0.00 0.00 33.67 2.52
140 141 7.424227 AAATTGAACCATGCACACATAAAAG 57.576 32.000 0.00 0.00 33.67 2.27
141 142 7.798596 AAAATTGAACCATGCACACATAAAA 57.201 28.000 0.00 0.00 33.67 1.52
142 143 7.307042 CGAAAAATTGAACCATGCACACATAAA 60.307 33.333 0.00 0.00 33.67 1.40
143 144 6.145209 CGAAAAATTGAACCATGCACACATAA 59.855 34.615 0.00 0.00 33.67 1.90
144 145 5.632764 CGAAAAATTGAACCATGCACACATA 59.367 36.000 0.00 0.00 33.67 2.29
145 146 4.448395 CGAAAAATTGAACCATGCACACAT 59.552 37.500 0.00 0.00 36.79 3.21
146 147 3.801050 CGAAAAATTGAACCATGCACACA 59.199 39.130 0.00 0.00 0.00 3.72
147 148 4.047822 TCGAAAAATTGAACCATGCACAC 58.952 39.130 0.00 0.00 0.00 3.82
148 149 4.047822 GTCGAAAAATTGAACCATGCACA 58.952 39.130 0.00 0.00 0.00 4.57
149 150 3.428534 GGTCGAAAAATTGAACCATGCAC 59.571 43.478 0.00 0.00 0.00 4.57
150 151 3.320541 AGGTCGAAAAATTGAACCATGCA 59.679 39.130 0.00 0.00 0.00 3.96
151 152 3.913089 AGGTCGAAAAATTGAACCATGC 58.087 40.909 0.00 0.00 0.00 4.06
152 153 7.090173 ACATTAGGTCGAAAAATTGAACCATG 58.910 34.615 0.00 0.00 0.00 3.66
153 154 7.227049 ACATTAGGTCGAAAAATTGAACCAT 57.773 32.000 0.00 0.00 0.00 3.55
154 155 6.642707 ACATTAGGTCGAAAAATTGAACCA 57.357 33.333 0.00 0.00 0.00 3.67
155 156 9.634163 AATTACATTAGGTCGAAAAATTGAACC 57.366 29.630 0.00 0.00 0.00 3.62
192 193 9.490379 CGGTATTCTTTAGGCAGTCTTAATAAT 57.510 33.333 0.00 0.00 0.00 1.28
193 194 8.480501 ACGGTATTCTTTAGGCAGTCTTAATAA 58.519 33.333 0.00 0.00 0.00 1.40
194 195 7.924412 CACGGTATTCTTTAGGCAGTCTTAATA 59.076 37.037 0.00 0.00 0.00 0.98
195 196 6.761714 CACGGTATTCTTTAGGCAGTCTTAAT 59.238 38.462 0.00 0.00 0.00 1.40
196 197 6.103997 CACGGTATTCTTTAGGCAGTCTTAA 58.896 40.000 0.00 0.00 0.00 1.85
197 198 5.186409 ACACGGTATTCTTTAGGCAGTCTTA 59.814 40.000 0.00 0.00 0.00 2.10
198 199 4.020485 ACACGGTATTCTTTAGGCAGTCTT 60.020 41.667 0.00 0.00 0.00 3.01
199 200 3.514309 ACACGGTATTCTTTAGGCAGTCT 59.486 43.478 0.00 0.00 0.00 3.24
200 201 3.617263 CACACGGTATTCTTTAGGCAGTC 59.383 47.826 0.00 0.00 0.00 3.51
201 202 3.007614 ACACACGGTATTCTTTAGGCAGT 59.992 43.478 0.00 0.00 0.00 4.40
202 203 3.370978 CACACACGGTATTCTTTAGGCAG 59.629 47.826 0.00 0.00 0.00 4.85
203 204 3.244284 ACACACACGGTATTCTTTAGGCA 60.244 43.478 0.00 0.00 0.00 4.75
204 205 3.332034 ACACACACGGTATTCTTTAGGC 58.668 45.455 0.00 0.00 0.00 3.93
205 206 4.562082 TGACACACACGGTATTCTTTAGG 58.438 43.478 0.00 0.00 0.00 2.69
206 207 6.721571 AATGACACACACGGTATTCTTTAG 57.278 37.500 0.00 0.00 0.00 1.85
207 208 8.780846 AATAATGACACACACGGTATTCTTTA 57.219 30.769 0.00 0.00 0.00 1.85
208 209 7.681939 AATAATGACACACACGGTATTCTTT 57.318 32.000 0.00 0.00 0.00 2.52
209 210 7.389330 TGAAATAATGACACACACGGTATTCTT 59.611 33.333 0.00 0.00 0.00 2.52
210 211 6.876789 TGAAATAATGACACACACGGTATTCT 59.123 34.615 0.00 0.00 0.00 2.40
211 212 7.067532 TGAAATAATGACACACACGGTATTC 57.932 36.000 0.00 0.00 0.00 1.75
212 213 7.335673 TCATGAAATAATGACACACACGGTATT 59.664 33.333 0.00 0.00 31.58 1.89
213 214 6.821160 TCATGAAATAATGACACACACGGTAT 59.179 34.615 0.00 0.00 31.58 2.73
214 215 6.166982 TCATGAAATAATGACACACACGGTA 58.833 36.000 0.00 0.00 31.58 4.02
215 216 5.000591 TCATGAAATAATGACACACACGGT 58.999 37.500 0.00 0.00 31.58 4.83
216 217 5.544136 TCATGAAATAATGACACACACGG 57.456 39.130 0.00 0.00 31.58 4.94
217 218 7.077605 AGTTTCATGAAATAATGACACACACG 58.922 34.615 23.05 0.00 38.94 4.49
218 219 9.329913 GTAGTTTCATGAAATAATGACACACAC 57.670 33.333 23.05 7.01 38.94 3.82
219 220 9.061435 TGTAGTTTCATGAAATAATGACACACA 57.939 29.630 23.05 14.08 38.94 3.72
220 221 9.329913 GTGTAGTTTCATGAAATAATGACACAC 57.670 33.333 27.36 23.39 38.94 3.82
221 222 9.061435 TGTGTAGTTTCATGAAATAATGACACA 57.939 29.630 29.06 29.06 38.94 3.72
222 223 9.891828 TTGTGTAGTTTCATGAAATAATGACAC 57.108 29.630 26.57 26.57 37.47 3.67
224 225 9.065871 GCTTGTGTAGTTTCATGAAATAATGAC 57.934 33.333 23.05 15.69 36.31 3.06
225 226 7.962373 CGCTTGTGTAGTTTCATGAAATAATGA 59.038 33.333 23.05 5.18 34.75 2.57
226 227 7.962373 TCGCTTGTGTAGTTTCATGAAATAATG 59.038 33.333 23.05 9.86 32.36 1.90
227 228 8.039603 TCGCTTGTGTAGTTTCATGAAATAAT 57.960 30.769 23.05 14.57 32.36 1.28
228 229 7.172532 ACTCGCTTGTGTAGTTTCATGAAATAA 59.827 33.333 23.05 11.96 32.36 1.40
229 230 6.649141 ACTCGCTTGTGTAGTTTCATGAAATA 59.351 34.615 23.05 13.40 32.36 1.40
230 231 5.470098 ACTCGCTTGTGTAGTTTCATGAAAT 59.530 36.000 23.05 14.29 32.36 2.17
231 232 4.814234 ACTCGCTTGTGTAGTTTCATGAAA 59.186 37.500 16.91 16.91 0.00 2.69
232 233 4.377021 ACTCGCTTGTGTAGTTTCATGAA 58.623 39.130 3.38 3.38 0.00 2.57
233 234 3.990092 ACTCGCTTGTGTAGTTTCATGA 58.010 40.909 0.00 0.00 0.00 3.07
234 235 5.161358 TCTACTCGCTTGTGTAGTTTCATG 58.839 41.667 0.00 0.00 39.53 3.07
235 236 5.386958 TCTACTCGCTTGTGTAGTTTCAT 57.613 39.130 0.00 0.00 39.53 2.57
236 237 4.841443 TCTACTCGCTTGTGTAGTTTCA 57.159 40.909 0.00 0.00 39.53 2.69
237 238 6.452611 CGAATTCTACTCGCTTGTGTAGTTTC 60.453 42.308 3.52 0.00 39.53 2.78
238 239 5.345202 CGAATTCTACTCGCTTGTGTAGTTT 59.655 40.000 3.52 0.00 39.53 2.66
239 240 4.857588 CGAATTCTACTCGCTTGTGTAGTT 59.142 41.667 3.52 0.00 39.53 2.24
240 241 4.155462 TCGAATTCTACTCGCTTGTGTAGT 59.845 41.667 3.52 0.00 39.53 2.73
241 242 4.496183 GTCGAATTCTACTCGCTTGTGTAG 59.504 45.833 3.52 0.00 39.77 2.74
242 243 4.409570 GTCGAATTCTACTCGCTTGTGTA 58.590 43.478 3.52 0.00 36.25 2.90
243 244 3.243336 GTCGAATTCTACTCGCTTGTGT 58.757 45.455 3.52 0.00 36.25 3.72
244 245 2.599082 GGTCGAATTCTACTCGCTTGTG 59.401 50.000 9.70 0.00 36.25 3.33
245 246 2.230508 TGGTCGAATTCTACTCGCTTGT 59.769 45.455 9.70 0.00 36.25 3.16
246 247 2.876091 TGGTCGAATTCTACTCGCTTG 58.124 47.619 9.70 0.00 36.25 4.01
247 248 3.802948 ATGGTCGAATTCTACTCGCTT 57.197 42.857 9.70 0.00 36.25 4.68
248 249 5.455056 AATATGGTCGAATTCTACTCGCT 57.545 39.130 9.70 0.00 36.25 4.93
249 250 5.690409 TCAAATATGGTCGAATTCTACTCGC 59.310 40.000 9.70 0.00 36.25 5.03
250 251 7.875316 ATCAAATATGGTCGAATTCTACTCG 57.125 36.000 9.70 0.00 37.66 4.18
251 252 9.141400 GGTATCAAATATGGTCGAATTCTACTC 57.859 37.037 9.70 1.86 0.00 2.59
252 253 8.095169 GGGTATCAAATATGGTCGAATTCTACT 58.905 37.037 9.70 0.00 0.00 2.57
253 254 7.876068 TGGGTATCAAATATGGTCGAATTCTAC 59.124 37.037 3.52 2.47 0.00 2.59
254 255 7.969004 TGGGTATCAAATATGGTCGAATTCTA 58.031 34.615 3.52 0.00 0.00 2.10
255 256 6.837312 TGGGTATCAAATATGGTCGAATTCT 58.163 36.000 3.52 0.00 0.00 2.40
256 257 7.504924 TTGGGTATCAAATATGGTCGAATTC 57.495 36.000 0.00 0.00 31.46 2.17
257 258 7.889873 TTTGGGTATCAAATATGGTCGAATT 57.110 32.000 0.00 0.00 40.14 2.17
258 259 7.889873 TTTTGGGTATCAAATATGGTCGAAT 57.110 32.000 0.00 0.00 43.95 3.34
259 260 7.889873 ATTTTGGGTATCAAATATGGTCGAA 57.110 32.000 0.00 0.00 43.95 3.71
277 278 8.002984 AGGTAACGTTTCCCATTATATTTTGG 57.997 34.615 19.13 0.00 46.39 3.28
278 279 9.511144 GAAGGTAACGTTTCCCATTATATTTTG 57.489 33.333 19.13 0.00 46.39 2.44
279 280 8.689061 GGAAGGTAACGTTTCCCATTATATTTT 58.311 33.333 19.13 4.88 46.39 1.82
280 281 7.835181 TGGAAGGTAACGTTTCCCATTATATTT 59.165 33.333 19.13 5.56 41.75 1.40
281 282 7.348033 TGGAAGGTAACGTTTCCCATTATATT 58.652 34.615 19.13 6.24 41.75 1.28
282 283 6.902408 TGGAAGGTAACGTTTCCCATTATAT 58.098 36.000 19.13 0.00 41.75 0.86
283 284 6.310764 TGGAAGGTAACGTTTCCCATTATA 57.689 37.500 19.13 0.58 41.75 0.98
284 285 5.182169 TGGAAGGTAACGTTTCCCATTAT 57.818 39.130 19.13 0.00 41.75 1.28
285 286 4.637387 TGGAAGGTAACGTTTCCCATTA 57.363 40.909 19.13 2.89 41.75 1.90
286 287 3.512219 TGGAAGGTAACGTTTCCCATT 57.488 42.857 19.13 8.98 41.75 3.16
287 288 3.151554 GTTGGAAGGTAACGTTTCCCAT 58.848 45.455 19.13 9.62 41.75 4.00
322 323 0.039074 CGGAGATGGTGGATACGAGC 60.039 60.000 0.00 0.00 42.51 5.03
382 698 4.030134 ACGAATGGCTCTTAGTCGTTAG 57.970 45.455 0.00 0.00 45.02 2.34
431 747 6.872670 ATTTTTGCAACAAAAAGCATGTTG 57.127 29.167 19.39 13.49 40.94 3.33
462 778 7.872163 TTGTTTTTGCAACAGATGTCATATC 57.128 32.000 0.00 0.00 0.00 1.63
483 799 4.908601 TGTGGGAATGTCTGTAGATTGT 57.091 40.909 0.00 0.00 0.00 2.71
484 800 4.093408 CGTTGTGGGAATGTCTGTAGATTG 59.907 45.833 0.00 0.00 0.00 2.67
493 809 3.004315 ACAAATCACGTTGTGGGAATGTC 59.996 43.478 0.00 0.00 40.22 3.06
499 815 1.202348 TGCAACAAATCACGTTGTGGG 60.202 47.619 5.08 0.00 44.49 4.61
540 861 5.127845 TGTGGAGTTTTGTTTGCCAGAAATA 59.872 36.000 0.00 0.00 0.00 1.40
551 872 4.867608 CGGAAACATTTGTGGAGTTTTGTT 59.132 37.500 0.00 0.00 35.77 2.83
553 874 3.245048 GCGGAAACATTTGTGGAGTTTTG 59.755 43.478 0.00 0.00 35.77 2.44
603 924 6.785488 TCTGCAACAGAGTTTATGTTACAG 57.215 37.500 11.18 11.18 46.50 2.74
624 945 8.641499 TGCGAAAATGTTTGTAGAATTTTTCT 57.359 26.923 0.00 0.00 43.72 2.52
725 1070 4.849329 GGACTGCTACGCGTCCGG 62.849 72.222 18.63 16.18 40.22 5.14
751 1096 9.979578 AGCAAAAATACAGAACATGTCAAATTA 57.020 25.926 0.00 0.00 42.70 1.40
752 1097 8.891671 AGCAAAAATACAGAACATGTCAAATT 57.108 26.923 0.00 0.00 42.70 1.82
753 1098 9.630098 CTAGCAAAAATACAGAACATGTCAAAT 57.370 29.630 0.00 0.00 42.70 2.32
754 1099 7.594758 GCTAGCAAAAATACAGAACATGTCAAA 59.405 33.333 10.63 0.00 42.70 2.69
755 1100 7.083858 GCTAGCAAAAATACAGAACATGTCAA 58.916 34.615 10.63 0.00 42.70 3.18
756 1101 6.349280 GGCTAGCAAAAATACAGAACATGTCA 60.349 38.462 18.24 0.00 42.70 3.58
757 1102 6.030228 GGCTAGCAAAAATACAGAACATGTC 58.970 40.000 18.24 0.00 42.70 3.06
758 1103 5.105756 GGGCTAGCAAAAATACAGAACATGT 60.106 40.000 18.24 0.00 46.45 3.21
759 1104 5.343249 GGGCTAGCAAAAATACAGAACATG 58.657 41.667 18.24 0.00 0.00 3.21
760 1105 4.402474 GGGGCTAGCAAAAATACAGAACAT 59.598 41.667 18.24 0.00 0.00 2.71
761 1106 3.761752 GGGGCTAGCAAAAATACAGAACA 59.238 43.478 18.24 0.00 0.00 3.18
762 1107 4.017126 AGGGGCTAGCAAAAATACAGAAC 58.983 43.478 18.24 0.00 0.00 3.01
763 1108 4.316025 AGGGGCTAGCAAAAATACAGAA 57.684 40.909 18.24 0.00 0.00 3.02
764 1109 4.016444 CAAGGGGCTAGCAAAAATACAGA 58.984 43.478 18.24 0.00 0.00 3.41
765 1110 3.131046 CCAAGGGGCTAGCAAAAATACAG 59.869 47.826 18.24 0.00 0.00 2.74
766 1111 3.096092 CCAAGGGGCTAGCAAAAATACA 58.904 45.455 18.24 0.00 0.00 2.29
767 1112 2.430694 CCCAAGGGGCTAGCAAAAATAC 59.569 50.000 18.24 0.00 35.35 1.89
768 1113 2.745968 CCCAAGGGGCTAGCAAAAATA 58.254 47.619 18.24 0.00 35.35 1.40
769 1114 1.571955 CCCAAGGGGCTAGCAAAAAT 58.428 50.000 18.24 0.00 35.35 1.82
770 1115 3.065462 CCCAAGGGGCTAGCAAAAA 57.935 52.632 18.24 0.00 35.35 1.94
771 1116 4.863415 CCCAAGGGGCTAGCAAAA 57.137 55.556 18.24 0.00 35.35 2.44
833 1178 1.103398 AACAAGCCCAGACAGCACAC 61.103 55.000 0.00 0.00 0.00 3.82
889 1234 2.342179 CTTCTCGAGCCTTTGAACCTC 58.658 52.381 7.81 0.00 0.00 3.85
918 1265 3.760035 GGAGGAGCGAGCGAACCA 61.760 66.667 0.00 0.00 0.00 3.67
937 1284 1.450312 GTGGTGCCGGAGATGGAAG 60.450 63.158 5.05 0.00 0.00 3.46
942 1289 3.717294 GGTGGTGGTGCCGGAGAT 61.717 66.667 5.05 0.00 41.21 2.75
974 1324 0.037232 GGTCTGGAAGGTTCGTGAGG 60.037 60.000 0.00 0.00 0.00 3.86
1033 1387 3.838271 GGAGGCTGCGACGGATCA 61.838 66.667 0.00 0.00 0.00 2.92
1056 1416 0.318275 GATCTGCGGAGTCGATGGTC 60.318 60.000 3.10 0.00 39.00 4.02
1063 1423 2.024871 CGGTCGATCTGCGGAGTC 59.975 66.667 3.10 0.07 41.33 3.36
1065 1425 2.329690 CTCGGTCGATCTGCGGAG 59.670 66.667 0.00 0.00 41.33 4.63
1066 1426 3.889044 GCTCGGTCGATCTGCGGA 61.889 66.667 0.00 0.00 41.33 5.54
1067 1427 4.933064 GGCTCGGTCGATCTGCGG 62.933 72.222 0.00 0.00 41.33 5.69
1070 1430 0.387878 GCTATGGCTCGGTCGATCTG 60.388 60.000 0.00 0.00 35.22 2.90
1071 1431 1.528292 GGCTATGGCTCGGTCGATCT 61.528 60.000 0.00 0.00 38.73 2.75
1072 1432 1.080434 GGCTATGGCTCGGTCGATC 60.080 63.158 0.00 0.00 38.73 3.69
1073 1433 1.188219 ATGGCTATGGCTCGGTCGAT 61.188 55.000 0.00 0.00 38.73 3.59
1074 1434 0.538746 TATGGCTATGGCTCGGTCGA 60.539 55.000 0.00 0.00 38.73 4.20
1075 1435 0.109086 CTATGGCTATGGCTCGGTCG 60.109 60.000 0.00 0.00 38.73 4.79
1076 1436 0.390472 GCTATGGCTATGGCTCGGTC 60.390 60.000 11.26 0.00 37.75 4.79
1077 1437 1.674057 GCTATGGCTATGGCTCGGT 59.326 57.895 11.26 0.00 37.75 4.69
1078 1438 1.078848 GGCTATGGCTATGGCTCGG 60.079 63.158 17.60 0.00 40.33 4.63
1079 1439 0.251354 ATGGCTATGGCTATGGCTCG 59.749 55.000 17.60 0.00 40.33 5.03
1093 1453 1.599047 CTTCAGGACGTCCATGGCT 59.401 57.895 35.00 12.66 38.89 4.75
1183 1543 1.299468 GATCTCACGCGCCTCGATT 60.299 57.895 5.73 0.00 41.67 3.34
1195 1555 3.531207 CGGAGGCGCTGGATCTCA 61.531 66.667 7.64 0.00 0.00 3.27
1235 1595 0.532573 TCCTTCTGCCGCTTCTGTAG 59.467 55.000 0.00 0.00 0.00 2.74
1237 1597 1.294780 CTCCTTCTGCCGCTTCTGT 59.705 57.895 0.00 0.00 0.00 3.41
1244 1604 2.186384 CTGCTCCTCCTTCTGCCG 59.814 66.667 0.00 0.00 0.00 5.69
1245 1605 2.124778 GCTGCTCCTCCTTCTGCC 60.125 66.667 0.00 0.00 0.00 4.85
1247 1607 1.521616 GGAGCTGCTCCTCCTTCTG 59.478 63.158 35.51 0.00 46.41 3.02
1259 1619 4.410400 GGGGTTGGACCGGAGCTG 62.410 72.222 9.46 0.00 39.83 4.24
1285 1645 1.150536 CGAGGAGGAGGAGGAGGAG 59.849 68.421 0.00 0.00 0.00 3.69
1288 1648 1.178534 GCATCGAGGAGGAGGAGGAG 61.179 65.000 0.00 0.00 0.00 3.69
1291 1651 2.206536 GGGCATCGAGGAGGAGGAG 61.207 68.421 0.00 0.00 0.00 3.69
1375 1738 3.796443 CTCGGGAGCGACGACGAA 61.796 66.667 12.29 0.00 42.66 3.85
1654 2023 1.071567 GCTCGTCGAAAGGAACCTCG 61.072 60.000 0.00 0.00 35.80 4.63
1660 2029 1.213013 GCAGAGCTCGTCGAAAGGA 59.787 57.895 8.37 0.00 0.00 3.36
1663 2032 1.442184 GTCGCAGAGCTCGTCGAAA 60.442 57.895 26.57 10.28 36.95 3.46
1735 2104 1.437772 CGTCGGGCATCTCGTCTAGT 61.438 60.000 0.00 0.00 0.00 2.57
1738 2107 2.750637 ACGTCGGGCATCTCGTCT 60.751 61.111 0.00 0.00 30.71 4.18
1786 2155 4.208403 TGCTTGCAGGTGGCCACT 62.208 61.111 33.91 18.03 43.89 4.00
1816 2185 1.004560 CTTGAACAGCGGCTCCAGA 60.005 57.895 0.00 0.00 0.00 3.86
1828 2197 1.597742 TCTTCCTGCACAGCTTGAAC 58.402 50.000 0.00 0.00 0.00 3.18
1931 2300 0.322975 ATCGCCATCCTGATGTAGGC 59.677 55.000 6.40 0.00 46.87 3.93
1943 2312 2.586079 CGAGTTGCCGATCGCCAT 60.586 61.111 10.32 0.00 36.24 4.40
2137 2512 2.435741 GAGGCTGTTGAACTCGACG 58.564 57.895 0.00 0.00 32.90 5.12
2242 2626 1.338655 TGGTGATTCGTCGTCTGTCAA 59.661 47.619 0.00 0.00 0.00 3.18
2247 2631 1.405821 GGAGATGGTGATTCGTCGTCT 59.594 52.381 0.00 1.86 0.00 4.18
2248 2632 1.134367 TGGAGATGGTGATTCGTCGTC 59.866 52.381 0.00 0.00 0.00 4.20
2249 2633 1.182667 TGGAGATGGTGATTCGTCGT 58.817 50.000 0.00 0.00 0.00 4.34
2250 2634 2.293677 TTGGAGATGGTGATTCGTCG 57.706 50.000 0.00 0.00 0.00 5.12
2265 2649 4.080695 AGCTTCTACAATGCAGAGATTGGA 60.081 41.667 3.04 0.00 37.60 3.53
2280 2664 4.529109 AGAGTTGGAGTTGAGCTTCTAC 57.471 45.455 0.00 0.00 0.00 2.59
2294 2678 5.902613 TTCTCAAATGGCAATAGAGTTGG 57.097 39.130 11.50 0.00 0.00 3.77
2300 2684 5.100259 CAGCTGTTTCTCAAATGGCAATAG 58.900 41.667 5.25 0.00 0.00 1.73
2303 2687 2.957680 TCAGCTGTTTCTCAAATGGCAA 59.042 40.909 14.67 0.00 0.00 4.52
2347 2731 5.338365 CAGATTTTATCAGCCAACAAGAGC 58.662 41.667 0.00 0.00 0.00 4.09
2386 2771 2.846206 TGTCATCAGGATGGCTTTAGGT 59.154 45.455 14.30 0.00 43.47 3.08
2416 2801 8.106247 ACCGTGTCTACAACAAAATAATGAAT 57.894 30.769 0.00 0.00 40.31 2.57
2437 2822 2.946990 CACACTCCCAACTTTTTACCGT 59.053 45.455 0.00 0.00 0.00 4.83
2438 2823 3.207778 TCACACTCCCAACTTTTTACCG 58.792 45.455 0.00 0.00 0.00 4.02
2440 2825 6.206634 TCATCATCACACTCCCAACTTTTTAC 59.793 38.462 0.00 0.00 0.00 2.01
2471 2862 2.805295 CGTTCAGGAGCACACCAAGTAA 60.805 50.000 0.00 0.00 0.00 2.24
2472 2863 1.270094 CGTTCAGGAGCACACCAAGTA 60.270 52.381 0.00 0.00 0.00 2.24
2473 2864 0.532862 CGTTCAGGAGCACACCAAGT 60.533 55.000 0.00 0.00 0.00 3.16
2474 2865 1.845809 GCGTTCAGGAGCACACCAAG 61.846 60.000 0.00 0.00 0.00 3.61
2475 2866 1.891919 GCGTTCAGGAGCACACCAA 60.892 57.895 0.00 0.00 0.00 3.67
2476 2867 2.280797 GCGTTCAGGAGCACACCA 60.281 61.111 0.00 0.00 0.00 4.17
2477 2868 2.280797 TGCGTTCAGGAGCACACC 60.281 61.111 0.00 0.00 38.59 4.16
2478 2869 3.248029 CTGCGTTCAGGAGCACAC 58.752 61.111 0.00 0.00 38.59 3.82
2485 2876 2.667536 AGTGCTGCTGCGTTCAGG 60.668 61.111 11.21 0.00 43.34 3.86
2532 2928 5.163457 TGTGATTTTGTTTCTTTGAGGGACC 60.163 40.000 0.00 0.00 0.00 4.46
2586 2982 9.793252 CATCTTAAAATGAATTCTCGGACAAAT 57.207 29.630 7.05 0.00 0.00 2.32
2589 2985 7.606073 TCACATCTTAAAATGAATTCTCGGACA 59.394 33.333 7.05 0.00 0.00 4.02
2677 3073 2.036217 TGCCTTTCTTTGCACAGATTGG 59.964 45.455 2.84 9.85 31.31 3.16
2741 3161 6.477033 GCGAAGTAAAGATGTGTGATGATACT 59.523 38.462 0.00 0.00 0.00 2.12
2745 3165 4.820897 AGCGAAGTAAAGATGTGTGATGA 58.179 39.130 0.00 0.00 0.00 2.92
2760 3180 7.009174 CACACTTGTTTCAAATTTTAGCGAAGT 59.991 33.333 0.00 0.00 0.00 3.01
2775 3195 9.296400 TCTTTTTACAATTAGCACACTTGTTTC 57.704 29.630 0.54 0.00 35.00 2.78
2782 3202 8.135529 AGAACCTTCTTTTTACAATTAGCACAC 58.864 33.333 0.00 0.00 32.55 3.82
2850 3276 3.631145 TGCTGAAATTCAAGTGTGAGC 57.369 42.857 0.00 0.00 34.49 4.26
2876 3302 4.564769 CCGTGTTTTTCAAAAGCAGCTTAA 59.435 37.500 8.45 0.00 0.00 1.85
2878 3304 2.929398 CCGTGTTTTTCAAAAGCAGCTT 59.071 40.909 0.21 0.21 0.00 3.74
2909 3336 6.126507 TGACCCAAAGCTCATCCTTCATATAA 60.127 38.462 0.00 0.00 0.00 0.98
2912 3339 3.523157 TGACCCAAAGCTCATCCTTCATA 59.477 43.478 0.00 0.00 0.00 2.15
2949 3376 2.234300 AAAGTTGGAAGCGTCGAAGA 57.766 45.000 1.37 0.00 0.00 2.87
2999 4276 8.864069 TTGCTTTTGAGACGAATGAAAATTTA 57.136 26.923 0.00 0.00 0.00 1.40
3012 4289 6.265577 ACATGTTGTACTTTGCTTTTGAGAC 58.734 36.000 0.00 0.00 0.00 3.36
3070 4347 4.380843 TTTCCTGCCCTTCTATGTTTCA 57.619 40.909 0.00 0.00 0.00 2.69
3071 4348 5.722021 TTTTTCCTGCCCTTCTATGTTTC 57.278 39.130 0.00 0.00 0.00 2.78
3091 4369 2.558359 CCCGTTCTTCTCAAGGCAATTT 59.442 45.455 0.00 0.00 0.00 1.82
3109 4387 3.322254 AGAATAGAACCTATGCTCACCCG 59.678 47.826 0.00 0.00 0.00 5.28
3138 4416 4.022589 CACAATTGTGCTCATCAGGTTCTT 60.023 41.667 24.69 0.00 39.39 2.52
3194 4534 6.476378 ACATCAACAGGCAGAAGTATAAGTT 58.524 36.000 0.00 0.00 0.00 2.66
3195 4535 6.054860 ACATCAACAGGCAGAAGTATAAGT 57.945 37.500 0.00 0.00 0.00 2.24
3196 4536 6.992063 AACATCAACAGGCAGAAGTATAAG 57.008 37.500 0.00 0.00 0.00 1.73
3197 4537 6.374333 GGAAACATCAACAGGCAGAAGTATAA 59.626 38.462 0.00 0.00 0.00 0.98
3198 4538 5.880332 GGAAACATCAACAGGCAGAAGTATA 59.120 40.000 0.00 0.00 0.00 1.47
3199 4539 4.702131 GGAAACATCAACAGGCAGAAGTAT 59.298 41.667 0.00 0.00 0.00 2.12
3200 4540 4.072131 GGAAACATCAACAGGCAGAAGTA 58.928 43.478 0.00 0.00 0.00 2.24
3201 4541 2.887152 GGAAACATCAACAGGCAGAAGT 59.113 45.455 0.00 0.00 0.00 3.01
3202 4542 2.229784 GGGAAACATCAACAGGCAGAAG 59.770 50.000 0.00 0.00 0.00 2.85
3203 4543 2.238521 GGGAAACATCAACAGGCAGAA 58.761 47.619 0.00 0.00 0.00 3.02
3204 4544 1.881925 CGGGAAACATCAACAGGCAGA 60.882 52.381 0.00 0.00 0.00 4.26
3205 4545 0.523072 CGGGAAACATCAACAGGCAG 59.477 55.000 0.00 0.00 0.00 4.85
3206 4546 1.523154 GCGGGAAACATCAACAGGCA 61.523 55.000 0.00 0.00 0.00 4.75
3207 4547 1.212751 GCGGGAAACATCAACAGGC 59.787 57.895 0.00 0.00 0.00 4.85
3208 4548 1.883021 GGCGGGAAACATCAACAGG 59.117 57.895 0.00 0.00 0.00 4.00
3209 4549 1.501741 CGGCGGGAAACATCAACAG 59.498 57.895 0.00 0.00 0.00 3.16
3210 4550 2.622011 GCGGCGGGAAACATCAACA 61.622 57.895 9.78 0.00 0.00 3.33
3211 4551 2.136196 TTGCGGCGGGAAACATCAAC 62.136 55.000 9.78 0.00 0.00 3.18
3212 4552 1.899054 TTGCGGCGGGAAACATCAA 60.899 52.632 9.78 0.00 0.00 2.57
3249 4589 9.162764 TGCAGGTTACTTTCTTCATAGTTAATC 57.837 33.333 0.00 0.00 0.00 1.75
3257 4597 6.015940 CCTCTTTTGCAGGTTACTTTCTTCAT 60.016 38.462 0.00 0.00 0.00 2.57
3277 4617 3.552875 CATGTGCATGGAGATTCCTCTT 58.447 45.455 4.35 0.00 39.38 2.85
3282 4622 3.119245 ACAAAGCATGTGCATGGAGATTC 60.119 43.478 13.28 0.00 41.93 2.52
3283 4623 2.829720 ACAAAGCATGTGCATGGAGATT 59.170 40.909 13.28 0.00 41.93 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.