Multiple sequence alignment - TraesCS4B01G037200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G037200 chr4B 100.000 4123 0 0 970 5092 26827521 26823399 0.000000e+00 7614
1 TraesCS4B01G037200 chr4B 100.000 534 0 0 1 534 26828490 26827957 0.000000e+00 987
2 TraesCS4B01G037200 chr4A 92.311 4162 216 48 975 5092 584882427 584886528 0.000000e+00 5818
3 TraesCS4B01G037200 chr4A 91.949 236 12 4 277 510 584882088 584882318 1.770000e-84 324
4 TraesCS4B01G037200 chr4D 91.018 4019 211 64 975 4931 15772086 15768156 0.000000e+00 5284
5 TraesCS4B01G037200 chr4D 86.047 301 9 8 248 534 15772439 15772158 4.990000e-75 292
6 TraesCS4B01G037200 chr4D 83.799 179 11 6 4928 5092 15768044 15767870 2.460000e-33 154
7 TraesCS4B01G037200 chr6D 88.880 1196 88 22 2637 3814 450653647 450654815 0.000000e+00 1430
8 TraesCS4B01G037200 chr6D 90.208 337 17 8 4288 4616 450654815 450655143 4.710000e-115 425
9 TraesCS4B01G037200 chr7B 86.601 1224 120 17 2020 3213 239091063 239092272 0.000000e+00 1312
10 TraesCS4B01G037200 chr7B 89.106 872 64 23 1591 2450 115811353 115812205 0.000000e+00 1055
11 TraesCS4B01G037200 chr7B 91.628 215 16 2 5 218 642757412 642757625 3.850000e-76 296
12 TraesCS4B01G037200 chr2B 88.978 871 67 20 1591 2450 267912408 267911556 0.000000e+00 1050
13 TraesCS4B01G037200 chr2B 88.863 871 70 19 1591 2450 334878473 334877619 0.000000e+00 1046
14 TraesCS4B01G037200 chr2B 86.611 239 11 5 1 218 736780185 736779947 1.420000e-60 244
15 TraesCS4B01G037200 chr2B 84.305 223 24 11 1 217 1205432 1205649 1.860000e-49 207
16 TraesCS4B01G037200 chr2B 86.772 189 15 7 1591 1778 334879564 334879385 8.640000e-48 202
17 TraesCS4B01G037200 chr7A 86.878 221 21 8 1 217 448196594 448196810 1.830000e-59 241
18 TraesCS4B01G037200 chr5B 86.036 222 24 7 1 218 502141111 502141329 1.100000e-56 231
19 TraesCS4B01G037200 chr1B 87.037 216 9 7 4 218 144875512 144875315 5.130000e-55 226
20 TraesCS4B01G037200 chr5D 85.520 221 25 7 1 218 91657276 91657060 1.840000e-54 224
21 TraesCS4B01G037200 chrUn 89.011 182 15 3 1 179 250541690 250541869 2.390000e-53 220
22 TraesCS4B01G037200 chr5A 83.636 220 28 7 1 217 601748869 601749083 3.110000e-47 200


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G037200 chr4B 26823399 26828490 5091 True 4300.5 7614 100.000000 1 5092 2 chr4B.!!$R1 5091
1 TraesCS4B01G037200 chr4A 584882088 584886528 4440 False 3071.0 5818 92.130000 277 5092 2 chr4A.!!$F1 4815
2 TraesCS4B01G037200 chr4D 15767870 15772439 4569 True 1910.0 5284 86.954667 248 5092 3 chr4D.!!$R1 4844
3 TraesCS4B01G037200 chr6D 450653647 450655143 1496 False 927.5 1430 89.544000 2637 4616 2 chr6D.!!$F1 1979
4 TraesCS4B01G037200 chr7B 239091063 239092272 1209 False 1312.0 1312 86.601000 2020 3213 1 chr7B.!!$F2 1193
5 TraesCS4B01G037200 chr7B 115811353 115812205 852 False 1055.0 1055 89.106000 1591 2450 1 chr7B.!!$F1 859
6 TraesCS4B01G037200 chr2B 267911556 267912408 852 True 1050.0 1050 88.978000 1591 2450 1 chr2B.!!$R1 859
7 TraesCS4B01G037200 chr2B 334877619 334879564 1945 True 624.0 1046 87.817500 1591 2450 2 chr2B.!!$R3 859

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
243 244 0.034767 ACACCCATGACAGCATCTGG 60.035 55.0 0.00 0.0 35.51 3.86 F
1609 1634 0.038709 TAACCGCATTTGCCTGCAAC 60.039 50.0 3.64 0.0 42.40 4.17 F
1888 3012 0.764890 AGAAGTGCCTTGGTGTGCTA 59.235 50.0 0.00 0.0 0.00 3.49 F
3079 4249 0.187361 TGGCCAACTGGTTTAGCCTT 59.813 50.0 0.61 0.0 39.16 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1888 3012 0.037303 CACTTCCAGTGTGCCCTGAT 59.963 55.0 0.00 0.00 41.19 2.90 R
2524 3663 0.949397 CGCTGGCATGCATAATCAGT 59.051 50.0 21.36 0.00 0.00 3.41 R
3868 5061 0.611618 TGAACCGGCTGGCAATTCAT 60.612 50.0 12.89 0.00 39.70 2.57 R
4252 5447 0.473755 TCTGAACAAGCTTGGCCTGA 59.526 50.0 29.18 23.01 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 7.755582 AAAAGTTCACCAAATTCGAAGAAAG 57.244 32.000 3.35 0.00 45.90 2.62
30 31 6.451064 AAGTTCACCAAATTCGAAGAAAGT 57.549 33.333 3.35 0.00 45.90 2.66
31 32 6.451064 AGTTCACCAAATTCGAAGAAAGTT 57.549 33.333 3.35 0.00 45.90 2.66
32 33 6.495706 AGTTCACCAAATTCGAAGAAAGTTC 58.504 36.000 3.35 0.00 45.90 3.01
33 34 6.094881 AGTTCACCAAATTCGAAGAAAGTTCA 59.905 34.615 3.35 0.00 45.90 3.18
34 35 6.633500 TCACCAAATTCGAAGAAAGTTCAT 57.367 33.333 3.35 0.00 45.90 2.57
35 36 6.668323 TCACCAAATTCGAAGAAAGTTCATC 58.332 36.000 3.35 0.00 45.90 2.92
36 37 5.565259 CACCAAATTCGAAGAAAGTTCATCG 59.435 40.000 11.37 11.37 46.24 3.84
37 38 5.088739 CCAAATTCGAAGAAAGTTCATCGG 58.911 41.667 16.03 2.98 45.30 4.18
38 39 5.106712 CCAAATTCGAAGAAAGTTCATCGGA 60.107 40.000 16.03 9.87 45.30 4.55
39 40 6.403636 CCAAATTCGAAGAAAGTTCATCGGAT 60.404 38.462 16.03 11.53 45.39 4.18
40 41 6.743575 AATTCGAAGAAAGTTCATCGGATT 57.256 33.333 15.81 15.81 46.01 3.01
41 42 5.779806 TTCGAAGAAAGTTCATCGGATTC 57.220 39.130 16.03 0.17 45.30 2.52
42 43 4.816392 TCGAAGAAAGTTCATCGGATTCA 58.184 39.130 16.03 0.00 45.30 2.57
43 44 5.234752 TCGAAGAAAGTTCATCGGATTCAA 58.765 37.500 16.03 0.00 45.30 2.69
44 45 5.699001 TCGAAGAAAGTTCATCGGATTCAAA 59.301 36.000 16.03 0.00 45.30 2.69
45 46 6.203915 TCGAAGAAAGTTCATCGGATTCAAAA 59.796 34.615 16.03 0.00 45.30 2.44
46 47 6.855914 CGAAGAAAGTTCATCGGATTCAAAAA 59.144 34.615 10.07 0.00 42.61 1.94
154 155 9.741647 AAAGTTCATCAGATTCAGAAAAAGTTC 57.258 29.630 0.00 0.00 0.00 3.01
155 156 8.455903 AGTTCATCAGATTCAGAAAAAGTTCA 57.544 30.769 0.00 0.00 36.09 3.18
156 157 9.075678 AGTTCATCAGATTCAGAAAAAGTTCAT 57.924 29.630 0.00 0.00 36.09 2.57
157 158 9.339492 GTTCATCAGATTCAGAAAAAGTTCATC 57.661 33.333 0.00 0.00 36.09 2.92
158 159 7.745972 TCATCAGATTCAGAAAAAGTTCATCG 58.254 34.615 0.00 0.00 36.09 3.84
159 160 6.486253 TCAGATTCAGAAAAAGTTCATCGG 57.514 37.500 0.00 0.00 36.09 4.18
160 161 5.997746 TCAGATTCAGAAAAAGTTCATCGGT 59.002 36.000 0.00 0.00 36.09 4.69
161 162 6.486657 TCAGATTCAGAAAAAGTTCATCGGTT 59.513 34.615 0.00 0.00 36.09 4.44
162 163 7.013274 TCAGATTCAGAAAAAGTTCATCGGTTT 59.987 33.333 0.00 0.00 36.09 3.27
163 164 7.649306 CAGATTCAGAAAAAGTTCATCGGTTTT 59.351 33.333 0.00 0.00 36.09 2.43
164 165 7.649306 AGATTCAGAAAAAGTTCATCGGTTTTG 59.351 33.333 0.00 0.00 36.09 2.44
165 166 6.443934 TCAGAAAAAGTTCATCGGTTTTGA 57.556 33.333 0.00 0.00 36.09 2.69
166 167 6.857956 TCAGAAAAAGTTCATCGGTTTTGAA 58.142 32.000 0.00 0.00 36.09 2.69
167 168 7.316640 TCAGAAAAAGTTCATCGGTTTTGAAA 58.683 30.769 0.00 0.00 35.03 2.69
168 169 7.815068 TCAGAAAAAGTTCATCGGTTTTGAAAA 59.185 29.630 0.00 0.00 35.03 2.29
169 170 8.439286 CAGAAAAAGTTCATCGGTTTTGAAAAA 58.561 29.630 0.00 0.00 35.03 1.94
198 199 4.379445 TCGAAATCGAAAAACGTTCATCG 58.621 39.130 22.44 22.44 46.30 3.84
199 200 3.532977 CGAAATCGAAAAACGTTCATCGG 59.467 43.478 25.70 12.37 42.32 4.18
200 201 4.460505 GAAATCGAAAAACGTTCATCGGT 58.539 39.130 25.70 20.25 44.69 4.69
201 202 6.333182 CGAAATCGAAAAACGTTCATCGGTT 61.333 40.000 25.70 23.61 46.62 4.44
230 231 6.800072 AAAAGTTCATCCTAAAAACACCCA 57.200 33.333 0.00 0.00 0.00 4.51
231 232 6.994421 AAAGTTCATCCTAAAAACACCCAT 57.006 33.333 0.00 0.00 0.00 4.00
232 233 5.982890 AGTTCATCCTAAAAACACCCATG 57.017 39.130 0.00 0.00 0.00 3.66
233 234 5.640147 AGTTCATCCTAAAAACACCCATGA 58.360 37.500 0.00 0.00 0.00 3.07
234 235 5.476945 AGTTCATCCTAAAAACACCCATGAC 59.523 40.000 0.00 0.00 0.00 3.06
235 236 4.991776 TCATCCTAAAAACACCCATGACA 58.008 39.130 0.00 0.00 0.00 3.58
236 237 5.009631 TCATCCTAAAAACACCCATGACAG 58.990 41.667 0.00 0.00 0.00 3.51
237 238 3.153919 TCCTAAAAACACCCATGACAGC 58.846 45.455 0.00 0.00 0.00 4.40
238 239 2.890311 CCTAAAAACACCCATGACAGCA 59.110 45.455 0.00 0.00 0.00 4.41
239 240 3.511146 CCTAAAAACACCCATGACAGCAT 59.489 43.478 0.00 0.00 34.29 3.79
240 241 3.665745 AAAAACACCCATGACAGCATC 57.334 42.857 0.00 0.00 30.68 3.91
241 242 2.592102 AAACACCCATGACAGCATCT 57.408 45.000 0.00 0.00 30.68 2.90
242 243 1.830279 AACACCCATGACAGCATCTG 58.170 50.000 0.00 0.00 37.52 2.90
243 244 0.034767 ACACCCATGACAGCATCTGG 60.035 55.000 0.00 0.00 35.51 3.86
244 245 0.253894 CACCCATGACAGCATCTGGA 59.746 55.000 0.00 0.00 35.51 3.86
245 246 0.254178 ACCCATGACAGCATCTGGAC 59.746 55.000 0.00 0.00 35.51 4.02
246 247 0.812811 CCCATGACAGCATCTGGACG 60.813 60.000 0.00 0.00 35.51 4.79
304 307 3.334054 GACTCCAAGCCCAGCCCT 61.334 66.667 0.00 0.00 0.00 5.19
339 342 3.322466 CTCGGCCCACCTTGACCT 61.322 66.667 0.00 0.00 0.00 3.85
341 344 3.953775 CGGCCCACCTTGACCTGT 61.954 66.667 0.00 0.00 0.00 4.00
389 394 0.900647 CCTGTCAGAGACGGAACCCT 60.901 60.000 0.00 0.00 41.05 4.34
412 417 2.513897 GCCAAGTAAGCCGCGGAT 60.514 61.111 33.48 23.90 0.00 4.18
413 418 2.112815 GCCAAGTAAGCCGCGGATT 61.113 57.895 33.02 33.02 0.00 3.01
415 420 0.377203 CCAAGTAAGCCGCGGATTTC 59.623 55.000 35.57 28.86 0.00 2.17
416 421 1.083489 CAAGTAAGCCGCGGATTTCA 58.917 50.000 35.57 15.20 0.00 2.69
417 422 1.084289 AAGTAAGCCGCGGATTTCAC 58.916 50.000 35.57 26.33 0.00 3.18
1209 1230 2.163818 CCTTCTGCAAGGTTCGTGTA 57.836 50.000 0.00 0.00 44.11 2.90
1210 1231 2.489971 CCTTCTGCAAGGTTCGTGTAA 58.510 47.619 0.00 0.00 44.11 2.41
1214 1238 4.002906 TCTGCAAGGTTCGTGTAATCTT 57.997 40.909 0.00 0.00 39.19 2.40
1303 1327 2.334653 CCGCAGATCTCTCGCCTC 59.665 66.667 8.07 0.00 0.00 4.70
1417 1441 2.035626 CGGTGCCCCCTTGTGATT 59.964 61.111 0.00 0.00 0.00 2.57
1422 1446 0.780637 TGCCCCCTTGTGATTTACCA 59.219 50.000 0.00 0.00 0.00 3.25
1423 1447 1.182667 GCCCCCTTGTGATTTACCAC 58.817 55.000 0.00 0.00 37.55 4.16
1436 1461 2.829043 TTACCACTAGCAGCGTGCCG 62.829 60.000 6.39 2.10 46.52 5.69
1455 1480 1.969862 GCTGCCTGCCTGACATTTT 59.030 52.632 0.00 0.00 35.15 1.82
1458 1483 0.178967 TGCCTGCCTGACATTTTGGA 60.179 50.000 0.00 0.00 0.00 3.53
1459 1484 0.244721 GCCTGCCTGACATTTTGGAC 59.755 55.000 0.00 0.00 0.00 4.02
1478 1503 6.166984 TGGACATTTTGTGCTAAAATTGGA 57.833 33.333 8.79 0.00 39.59 3.53
1480 1505 6.649973 TGGACATTTTGTGCTAAAATTGGATG 59.350 34.615 8.79 3.81 39.59 3.51
1482 1507 5.412286 ACATTTTGTGCTAAAATTGGATGGC 59.588 36.000 8.79 0.00 0.00 4.40
1484 1509 3.872511 TGTGCTAAAATTGGATGGCTG 57.127 42.857 0.00 0.00 0.00 4.85
1485 1510 2.094078 TGTGCTAAAATTGGATGGCTGC 60.094 45.455 0.00 0.00 0.00 5.25
1486 1511 2.167075 GTGCTAAAATTGGATGGCTGCT 59.833 45.455 0.00 0.00 0.00 4.24
1487 1512 2.166870 TGCTAAAATTGGATGGCTGCTG 59.833 45.455 0.00 0.00 0.00 4.41
1488 1513 2.817901 CTAAAATTGGATGGCTGCTGC 58.182 47.619 7.10 7.10 38.76 5.25
1595 1620 1.338674 TGTGCTGGATCAAGGTAACCG 60.339 52.381 0.00 0.00 37.17 4.44
1609 1634 0.038709 TAACCGCATTTGCCTGCAAC 60.039 50.000 3.64 0.00 42.40 4.17
1614 1639 1.962092 GCATTTGCCTGCAACATGCG 61.962 55.000 23.14 7.88 41.87 4.73
1764 2884 7.872881 AGTACAGCATGATCAATCAATTCATC 58.127 34.615 0.00 0.00 40.69 2.92
1803 2927 6.963242 CACCAACTATCATTCGTCTGATTTTG 59.037 38.462 7.57 10.33 37.13 2.44
1832 2956 7.094248 TGTGCATAATCTCACTGTAATTGCTTT 60.094 33.333 0.00 0.00 34.49 3.51
1840 2964 8.306680 TCTCACTGTAATTGCTTTTACTGTAC 57.693 34.615 15.84 0.00 40.25 2.90
1888 3012 0.764890 AGAAGTGCCTTGGTGTGCTA 59.235 50.000 0.00 0.00 0.00 3.49
1960 3085 5.128827 TCCTGGTCAGTTGTATATCTGAACC 59.871 44.000 11.70 10.68 44.76 3.62
1982 3107 4.215613 CCTGTTTAACTTAGCTTGGGACAC 59.784 45.833 0.00 0.00 39.29 3.67
1991 3116 1.973281 CTTGGGACACGCCTGCATT 60.973 57.895 0.00 0.00 39.29 3.56
1996 3121 1.709147 GGACACGCCTGCATTAGCTG 61.709 60.000 0.00 0.00 42.74 4.24
2014 3140 2.413453 GCTGGTGACTCGAATTCAAGTC 59.587 50.000 17.93 17.93 41.84 3.01
2037 3165 5.985530 TCGGTTATTGTCTATGCAGATCTTG 59.014 40.000 0.00 0.00 32.09 3.02
2146 3274 5.355350 GCCTCATGTATGTTATCTAATGGCC 59.645 44.000 0.00 0.00 0.00 5.36
2147 3275 5.582269 CCTCATGTATGTTATCTAATGGCCG 59.418 44.000 0.00 0.00 0.00 6.13
2177 3305 4.947388 TCTAAATGCTCCTTTTAACCGCAT 59.053 37.500 0.00 0.00 42.56 4.73
2340 3478 4.946157 ACATAGAATCCTTTTGCTGGTGAG 59.054 41.667 0.00 0.00 0.00 3.51
2371 3509 4.222588 CCCCTTTGGTTCATTTGCTGATAA 59.777 41.667 0.00 0.00 32.72 1.75
2379 3517 6.832900 TGGTTCATTTGCTGATAATGGTCATA 59.167 34.615 0.00 0.00 34.51 2.15
2473 3611 3.076621 CTGCAGACAAGTAAGGCATTGA 58.923 45.455 8.42 0.00 33.50 2.57
2488 3626 5.714863 AGGCATTGACCCATCCAATTTATA 58.285 37.500 0.00 0.00 32.40 0.98
2542 3681 1.951602 TCACTGATTATGCATGCCAGC 59.048 47.619 16.68 2.33 0.00 4.85
2561 3700 3.792956 CAGCGGCATGTTTCAATTATGAC 59.207 43.478 1.45 0.00 34.61 3.06
2641 3806 8.536407 ACAAAATTTATTACAGCGTTGTGAAAC 58.464 29.630 15.78 0.00 38.23 2.78
2691 3856 3.808728 TGTCTCCAACAAAACCTCTCAG 58.191 45.455 0.00 0.00 34.03 3.35
2724 3889 4.864025 AACCTTTGGTAAGCAAGCAGCTC 61.864 47.826 0.00 0.00 45.14 4.09
2735 3901 2.864882 GCAAGCAGCTCTCAATTGCAAA 60.865 45.455 1.71 0.00 44.32 3.68
2740 3906 3.427863 GCAGCTCTCAATTGCAAAAGAAC 59.572 43.478 1.71 2.82 37.75 3.01
2756 3922 6.751888 GCAAAAGAACACATTTGTAGTTCAGT 59.248 34.615 18.98 10.00 43.00 3.41
2757 3923 7.275560 GCAAAAGAACACATTTGTAGTTCAGTT 59.724 33.333 18.98 13.24 43.00 3.16
2758 3924 9.139174 CAAAAGAACACATTTGTAGTTCAGTTT 57.861 29.630 18.98 16.17 43.00 2.66
2759 3925 8.911247 AAAGAACACATTTGTAGTTCAGTTTC 57.089 30.769 18.98 0.00 43.00 2.78
2760 3926 7.624360 AGAACACATTTGTAGTTCAGTTTCA 57.376 32.000 18.98 0.00 43.00 2.69
2761 3927 8.050778 AGAACACATTTGTAGTTCAGTTTCAA 57.949 30.769 18.98 0.00 43.00 2.69
2762 3928 7.968405 AGAACACATTTGTAGTTCAGTTTCAAC 59.032 33.333 18.98 0.00 43.00 3.18
2781 3947 3.425162 ACTTTCAAGGCTAACAGGGAG 57.575 47.619 0.00 0.00 0.00 4.30
2797 3963 4.104738 ACAGGGAGTCCTTTCATTCAGAAA 59.895 41.667 9.58 0.00 42.67 2.52
2954 4120 6.011122 AGGGAATTGCTTCTGACTTCATAT 57.989 37.500 0.00 0.00 0.00 1.78
3079 4249 0.187361 TGGCCAACTGGTTTAGCCTT 59.813 50.000 0.61 0.00 39.16 4.35
3080 4250 0.888619 GGCCAACTGGTTTAGCCTTC 59.111 55.000 13.78 0.00 36.80 3.46
3103 4273 4.449131 TCTCTTCCAGCTGCATATTCTTG 58.551 43.478 8.66 0.00 0.00 3.02
3242 4412 5.750067 GCAGGTATTTGTTGCATTCCTATTG 59.250 40.000 0.00 0.00 0.00 1.90
3246 4416 4.454728 TTTGTTGCATTCCTATTGCCTC 57.545 40.909 0.00 0.00 39.39 4.70
3266 4436 8.579850 TGCCTCTTCTTTTACATTTCATACAT 57.420 30.769 0.00 0.00 0.00 2.29
3597 4788 2.437281 ACCCAGTCATCTCACCATGATC 59.563 50.000 0.00 0.00 35.23 2.92
3663 4855 6.944234 AAAGAACAAGAGTTTGGTAGGAAG 57.056 37.500 0.00 0.00 38.30 3.46
3758 4951 1.427368 TGCACCAACATAAGTTCCCCT 59.573 47.619 0.00 0.00 35.28 4.79
3937 5130 2.324014 TTTGGCACGCCTGAGTCTGT 62.324 55.000 9.92 0.00 36.94 3.41
3998 5191 0.472734 ATACTAGGAGCAGCCCAGGG 60.473 60.000 0.00 0.00 37.37 4.45
4022 5215 0.605589 AACTGAGCAGTCCCTCTTCG 59.394 55.000 3.27 0.00 41.58 3.79
4043 5236 2.750350 CTGAACCCACCGCCTTCT 59.250 61.111 0.00 0.00 0.00 2.85
4088 5281 0.824595 ACTTTGGCAGCAGCACATCA 60.825 50.000 2.65 0.00 44.61 3.07
4118 5311 9.178758 AGTCAAAACTTTCTGACAAATAAGAGT 57.821 29.630 14.17 0.00 43.64 3.24
4186 5381 4.222114 GGTGAGAATCTTGTTTTTCTGCG 58.778 43.478 0.00 0.00 32.46 5.18
4216 5411 7.332926 ACTTACTCTGCTGATAATTGACAGTTG 59.667 37.037 12.77 7.91 36.62 3.16
4237 5432 1.336125 GGCATGCTAACTCATTGCTCC 59.664 52.381 18.92 0.00 0.00 4.70
4252 5447 4.657814 TTGCTCCCATTTTTCTCCTACT 57.342 40.909 0.00 0.00 0.00 2.57
4281 5476 0.320771 CTTGTTCAGAGGTGACGGGG 60.321 60.000 0.00 0.00 30.10 5.73
4338 5533 5.303165 TCTGGTCATATGCTGATGATTGAC 58.697 41.667 0.00 0.00 38.11 3.18
4419 5618 6.656632 TGTATTATTTCCTCATCGAGCTCT 57.343 37.500 12.85 0.00 0.00 4.09
4433 5634 3.057456 TCGAGCTCTTTAGGTTGTGACTC 60.057 47.826 12.85 0.00 36.24 3.36
4602 5809 2.645297 TGGTTGGTTCCTGGCTATAACA 59.355 45.455 0.00 0.00 0.00 2.41
4714 5922 3.053019 TGGCCATGGTGAATAATGGAGAA 60.053 43.478 14.67 0.00 45.29 2.87
4734 5942 4.470664 AGAATATTTTGGCATGGCTGGAAA 59.529 37.500 21.08 17.22 0.00 3.13
4736 5944 2.476126 TTTTGGCATGGCTGGAAATG 57.524 45.000 21.08 0.00 0.00 2.32
4739 5958 0.609151 TGGCATGGCTGGAAATGTTG 59.391 50.000 21.08 0.00 0.00 3.33
4744 5963 3.928375 GCATGGCTGGAAATGTTGTTTAG 59.072 43.478 0.00 0.00 0.00 1.85
4765 5984 9.810231 GTTTAGTTGTTTGAATTAAATGCATGG 57.190 29.630 0.00 0.00 0.00 3.66
4783 6002 4.318974 GCATGGAACTTGCAATGTTTCAAC 60.319 41.667 19.81 14.03 42.02 3.18
4791 6010 1.001378 GCAATGTTTCAACGCCTCTGT 60.001 47.619 0.00 0.00 0.00 3.41
4803 6022 1.470098 CGCCTCTGTAGCTTGCAAAAT 59.530 47.619 0.00 0.00 0.00 1.82
4806 6025 4.201950 CGCCTCTGTAGCTTGCAAAATAAT 60.202 41.667 0.00 0.00 0.00 1.28
4875 6098 2.042979 ACCTGCCCTTACCATCAACAAT 59.957 45.455 0.00 0.00 0.00 2.71
4877 6100 2.689983 CTGCCCTTACCATCAACAATCC 59.310 50.000 0.00 0.00 0.00 3.01
4880 6103 3.769300 GCCCTTACCATCAACAATCCTTT 59.231 43.478 0.00 0.00 0.00 3.11
4881 6104 4.381932 GCCCTTACCATCAACAATCCTTTG 60.382 45.833 0.00 0.00 38.86 2.77
4882 6105 4.381932 CCCTTACCATCAACAATCCTTTGC 60.382 45.833 0.00 0.00 36.22 3.68
4883 6106 4.463891 CCTTACCATCAACAATCCTTTGCT 59.536 41.667 0.00 0.00 36.22 3.91
4888 6111 6.825610 ACCATCAACAATCCTTTGCTAAAAA 58.174 32.000 0.00 0.00 36.22 1.94
4922 6145 8.934507 AATTAGATTGAGTACTTCACTGCTAC 57.065 34.615 0.00 0.00 37.72 3.58
4931 6154 6.887013 AGTACTTCACTGCTACTAGCTACTA 58.113 40.000 9.49 0.00 42.97 1.82
4932 6155 6.987992 AGTACTTCACTGCTACTAGCTACTAG 59.012 42.308 9.49 0.08 42.97 2.57
4952 6291 9.944376 CTACTAGCTAATGCCCATATTTTTCTA 57.056 33.333 0.00 0.00 40.80 2.10
5039 6378 1.068753 CTCTGACCTAGCCCATGCG 59.931 63.158 0.00 0.00 44.33 4.73
5080 6432 2.624838 ACAGTTTGTTCATGCTTCCAGG 59.375 45.455 0.00 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 7.817478 ACTTTCTTCGAATTTGGTGAACTTTTT 59.183 29.630 0.00 0.00 0.00 1.94
5 6 7.320399 ACTTTCTTCGAATTTGGTGAACTTTT 58.680 30.769 0.00 0.00 0.00 2.27
6 7 6.863275 ACTTTCTTCGAATTTGGTGAACTTT 58.137 32.000 0.00 0.00 0.00 2.66
7 8 6.451064 ACTTTCTTCGAATTTGGTGAACTT 57.549 33.333 0.00 0.00 0.00 2.66
8 9 6.094881 TGAACTTTCTTCGAATTTGGTGAACT 59.905 34.615 0.00 0.00 0.00 3.01
9 10 6.262601 TGAACTTTCTTCGAATTTGGTGAAC 58.737 36.000 0.00 0.00 0.00 3.18
10 11 6.443934 TGAACTTTCTTCGAATTTGGTGAA 57.556 33.333 0.00 0.00 0.00 3.18
11 12 6.633500 ATGAACTTTCTTCGAATTTGGTGA 57.367 33.333 0.00 0.00 0.00 4.02
12 13 6.918043 GATGAACTTTCTTCGAATTTGGTG 57.082 37.500 0.00 0.00 0.00 4.17
128 129 9.741647 GAACTTTTTCTGAATCTGATGAACTTT 57.258 29.630 0.00 0.00 0.00 2.66
129 130 8.906867 TGAACTTTTTCTGAATCTGATGAACTT 58.093 29.630 0.00 0.00 32.36 2.66
130 131 8.455903 TGAACTTTTTCTGAATCTGATGAACT 57.544 30.769 0.00 0.00 32.36 3.01
131 132 9.339492 GATGAACTTTTTCTGAATCTGATGAAC 57.661 33.333 0.00 0.00 32.36 3.18
132 133 8.232513 CGATGAACTTTTTCTGAATCTGATGAA 58.767 33.333 0.00 0.00 32.36 2.57
133 134 7.148356 CCGATGAACTTTTTCTGAATCTGATGA 60.148 37.037 0.00 0.00 32.36 2.92
134 135 6.965500 CCGATGAACTTTTTCTGAATCTGATG 59.035 38.462 0.00 0.00 32.36 3.07
135 136 6.656693 ACCGATGAACTTTTTCTGAATCTGAT 59.343 34.615 0.00 0.00 32.36 2.90
136 137 5.997746 ACCGATGAACTTTTTCTGAATCTGA 59.002 36.000 0.00 0.00 32.36 3.27
137 138 6.246420 ACCGATGAACTTTTTCTGAATCTG 57.754 37.500 0.00 0.00 32.36 2.90
138 139 6.884280 AACCGATGAACTTTTTCTGAATCT 57.116 33.333 0.00 0.00 32.36 2.40
139 140 7.647715 TCAAAACCGATGAACTTTTTCTGAATC 59.352 33.333 0.00 0.00 32.36 2.52
140 141 7.488322 TCAAAACCGATGAACTTTTTCTGAAT 58.512 30.769 0.00 0.00 32.36 2.57
141 142 6.857956 TCAAAACCGATGAACTTTTTCTGAA 58.142 32.000 0.00 0.00 32.36 3.02
142 143 6.443934 TCAAAACCGATGAACTTTTTCTGA 57.556 33.333 0.00 0.00 32.36 3.27
143 144 7.518731 TTTCAAAACCGATGAACTTTTTCTG 57.481 32.000 0.00 0.00 36.57 3.02
144 145 8.541133 TTTTTCAAAACCGATGAACTTTTTCT 57.459 26.923 0.00 0.00 36.57 2.52
172 173 7.212966 CGATGAACGTTTTTCGATTTCGATTAA 59.787 33.333 21.99 0.00 41.64 1.40
173 174 6.675332 CGATGAACGTTTTTCGATTTCGATTA 59.325 34.615 21.99 0.00 41.64 1.75
174 175 5.503376 CGATGAACGTTTTTCGATTTCGATT 59.497 36.000 21.99 0.00 41.64 3.34
175 176 5.013236 CGATGAACGTTTTTCGATTTCGAT 58.987 37.500 21.99 0.00 41.64 3.59
176 177 4.379445 CGATGAACGTTTTTCGATTTCGA 58.621 39.130 21.99 0.00 42.86 3.71
177 178 3.532977 CCGATGAACGTTTTTCGATTTCG 59.467 43.478 25.84 14.93 42.86 3.46
178 179 4.460505 ACCGATGAACGTTTTTCGATTTC 58.539 39.130 25.84 3.70 42.86 2.17
179 180 4.477302 ACCGATGAACGTTTTTCGATTT 57.523 36.364 25.84 12.81 42.86 2.17
180 181 4.477302 AACCGATGAACGTTTTTCGATT 57.523 36.364 25.84 17.44 42.86 3.34
181 182 4.477302 AAACCGATGAACGTTTTTCGAT 57.523 36.364 25.84 13.27 42.86 3.59
182 183 3.948196 AAACCGATGAACGTTTTTCGA 57.052 38.095 25.84 2.34 42.86 3.71
183 184 4.029704 TCAAAACCGATGAACGTTTTTCG 58.970 39.130 20.44 20.44 42.73 3.46
184 185 5.935448 TTCAAAACCGATGAACGTTTTTC 57.065 34.783 0.46 1.63 42.73 2.29
185 186 6.707599 TTTTCAAAACCGATGAACGTTTTT 57.292 29.167 0.46 0.00 44.72 1.94
186 187 6.707599 TTTTTCAAAACCGATGAACGTTTT 57.292 29.167 0.46 0.00 38.17 2.43
206 207 7.189079 TGGGTGTTTTTAGGATGAACTTTTT 57.811 32.000 0.00 0.00 0.00 1.94
207 208 6.800072 TGGGTGTTTTTAGGATGAACTTTT 57.200 33.333 0.00 0.00 0.00 2.27
208 209 6.553100 TCATGGGTGTTTTTAGGATGAACTTT 59.447 34.615 0.00 0.00 0.00 2.66
209 210 6.015434 GTCATGGGTGTTTTTAGGATGAACTT 60.015 38.462 0.00 0.00 0.00 2.66
210 211 5.476945 GTCATGGGTGTTTTTAGGATGAACT 59.523 40.000 0.00 0.00 0.00 3.01
211 212 5.242838 TGTCATGGGTGTTTTTAGGATGAAC 59.757 40.000 0.00 0.00 0.00 3.18
212 213 5.389520 TGTCATGGGTGTTTTTAGGATGAA 58.610 37.500 0.00 0.00 0.00 2.57
213 214 4.991776 TGTCATGGGTGTTTTTAGGATGA 58.008 39.130 0.00 0.00 0.00 2.92
214 215 4.380867 GCTGTCATGGGTGTTTTTAGGATG 60.381 45.833 0.00 0.00 0.00 3.51
215 216 3.763897 GCTGTCATGGGTGTTTTTAGGAT 59.236 43.478 0.00 0.00 0.00 3.24
216 217 3.153919 GCTGTCATGGGTGTTTTTAGGA 58.846 45.455 0.00 0.00 0.00 2.94
217 218 2.890311 TGCTGTCATGGGTGTTTTTAGG 59.110 45.455 0.00 0.00 0.00 2.69
218 219 4.460382 AGATGCTGTCATGGGTGTTTTTAG 59.540 41.667 0.00 0.00 31.96 1.85
219 220 4.218200 CAGATGCTGTCATGGGTGTTTTTA 59.782 41.667 0.00 0.00 31.96 1.52
220 221 3.006110 CAGATGCTGTCATGGGTGTTTTT 59.994 43.478 0.00 0.00 31.96 1.94
221 222 2.559668 CAGATGCTGTCATGGGTGTTTT 59.440 45.455 0.00 0.00 31.96 2.43
222 223 2.165167 CAGATGCTGTCATGGGTGTTT 58.835 47.619 0.00 0.00 31.96 2.83
223 224 1.615116 CCAGATGCTGTCATGGGTGTT 60.615 52.381 0.00 0.00 31.96 3.32
224 225 0.034767 CCAGATGCTGTCATGGGTGT 60.035 55.000 0.00 0.00 31.96 4.16
225 226 0.253894 TCCAGATGCTGTCATGGGTG 59.746 55.000 0.00 0.00 31.96 4.61
226 227 0.254178 GTCCAGATGCTGTCATGGGT 59.746 55.000 0.00 0.00 31.96 4.51
227 228 0.812811 CGTCCAGATGCTGTCATGGG 60.813 60.000 0.00 0.00 31.96 4.00
228 229 0.176449 TCGTCCAGATGCTGTCATGG 59.824 55.000 0.00 0.00 31.96 3.66
229 230 2.014335 TTCGTCCAGATGCTGTCATG 57.986 50.000 0.00 0.00 31.96 3.07
230 231 2.996249 ATTCGTCCAGATGCTGTCAT 57.004 45.000 0.00 0.00 35.17 3.06
231 232 2.768253 AATTCGTCCAGATGCTGTCA 57.232 45.000 0.00 0.00 0.00 3.58
232 233 4.425577 AAAAATTCGTCCAGATGCTGTC 57.574 40.909 0.00 0.00 0.00 3.51
255 256 6.649141 CAGCTACAAAGGTGTATCACTTTGTA 59.351 38.462 21.54 21.54 44.52 2.41
339 342 2.032117 GCGAATGTGTGAACATGTGACA 60.032 45.455 0.00 2.63 0.00 3.58
341 344 1.535028 GGCGAATGTGTGAACATGTGA 59.465 47.619 0.00 0.00 0.00 3.58
389 394 2.740826 GGCTTACTTGGCGCGTGA 60.741 61.111 8.43 0.00 0.00 4.35
408 413 2.686816 GCGGTGGTGGTGAAATCCG 61.687 63.158 0.00 0.00 40.72 4.18
410 415 2.686816 CGGCGGTGGTGGTGAAATC 61.687 63.158 0.00 0.00 0.00 2.17
411 416 2.671619 CGGCGGTGGTGGTGAAAT 60.672 61.111 0.00 0.00 0.00 2.17
1207 1228 7.481798 CGCCAAATCTAACTGAAACAAGATTAC 59.518 37.037 0.00 0.00 37.63 1.89
1209 1230 6.206634 TCGCCAAATCTAACTGAAACAAGATT 59.793 34.615 0.00 0.00 39.70 2.40
1210 1231 5.705441 TCGCCAAATCTAACTGAAACAAGAT 59.295 36.000 0.00 0.00 0.00 2.40
1214 1238 3.751175 CCTCGCCAAATCTAACTGAAACA 59.249 43.478 0.00 0.00 0.00 2.83
1262 1286 2.040359 GAGGGAGGAAGGAGGGGG 60.040 72.222 0.00 0.00 0.00 5.40
1312 1336 1.456892 ATACCCATCCTCGTCGGCA 60.457 57.895 0.00 0.00 0.00 5.69
1417 1441 1.079405 GGCACGCTGCTAGTGGTAA 60.079 57.895 9.23 0.00 44.28 2.85
1445 1470 4.211794 GCACAAAATGTCCAAAATGTCAGG 59.788 41.667 0.00 0.00 0.00 3.86
1449 1474 7.856145 TTTTAGCACAAAATGTCCAAAATGT 57.144 28.000 0.00 0.00 0.00 2.71
1455 1480 6.166984 TCCAATTTTAGCACAAAATGTCCA 57.833 33.333 9.11 0.00 30.94 4.02
1458 1483 5.412286 GCCATCCAATTTTAGCACAAAATGT 59.588 36.000 9.11 0.00 30.94 2.71
1459 1484 5.644636 AGCCATCCAATTTTAGCACAAAATG 59.355 36.000 9.11 0.56 30.94 2.32
1482 1507 0.757935 ATTGGGGCTAATGGCAGCAG 60.758 55.000 0.00 0.00 43.67 4.24
1484 1509 0.468771 AGATTGGGGCTAATGGCAGC 60.469 55.000 0.00 0.00 44.01 5.25
1485 1510 1.133699 TCAGATTGGGGCTAATGGCAG 60.134 52.381 0.00 0.00 44.01 4.85
1486 1511 0.925558 TCAGATTGGGGCTAATGGCA 59.074 50.000 0.00 0.00 44.01 4.92
1487 1512 2.071778 TTCAGATTGGGGCTAATGGC 57.928 50.000 0.00 0.00 40.90 4.40
1488 1513 4.477249 AGATTTCAGATTGGGGCTAATGG 58.523 43.478 0.00 0.00 0.00 3.16
1489 1514 5.738208 GCAAGATTTCAGATTGGGGCTAATG 60.738 44.000 0.00 0.00 0.00 1.90
1490 1515 4.343239 GCAAGATTTCAGATTGGGGCTAAT 59.657 41.667 0.00 0.00 0.00 1.73
1491 1516 3.701040 GCAAGATTTCAGATTGGGGCTAA 59.299 43.478 0.00 0.00 0.00 3.09
1492 1517 3.053395 AGCAAGATTTCAGATTGGGGCTA 60.053 43.478 0.00 0.00 0.00 3.93
1493 1518 2.105766 GCAAGATTTCAGATTGGGGCT 58.894 47.619 0.00 0.00 0.00 5.19
1494 1519 2.100418 GAGCAAGATTTCAGATTGGGGC 59.900 50.000 0.00 0.00 0.00 5.80
1495 1520 2.692041 GGAGCAAGATTTCAGATTGGGG 59.308 50.000 0.00 0.00 0.00 4.96
1595 1620 1.791662 GCATGTTGCAGGCAAATGC 59.208 52.632 24.20 24.20 44.26 3.56
1609 1634 3.434641 ACAGAGAAAACAGATGTCGCATG 59.565 43.478 0.00 0.00 0.00 4.06
1614 1639 5.777802 TGAGAGACAGAGAAAACAGATGTC 58.222 41.667 0.00 0.00 40.41 3.06
1792 2916 2.753989 TGCACACACAAAATCAGACG 57.246 45.000 0.00 0.00 0.00 4.18
1803 2927 6.668541 ATTACAGTGAGATTATGCACACAC 57.331 37.500 0.00 0.83 37.48 3.82
1840 2964 3.393800 CACGCTCCATATCTTTACCTGG 58.606 50.000 0.00 0.00 0.00 4.45
1888 3012 0.037303 CACTTCCAGTGTGCCCTGAT 59.963 55.000 0.00 0.00 41.19 2.90
1960 3085 4.084013 CGTGTCCCAAGCTAAGTTAAACAG 60.084 45.833 0.00 0.00 0.00 3.16
1991 3116 3.258372 ACTTGAATTCGAGTCACCAGCTA 59.742 43.478 20.76 0.00 35.78 3.32
2014 3140 5.755375 ACAAGATCTGCATAGACAATAACCG 59.245 40.000 0.00 0.00 35.34 4.44
2037 3165 3.002348 CCGTCTCTTGAACCAGAAACAAC 59.998 47.826 0.00 0.00 0.00 3.32
2146 3274 1.945394 AGGAGCATTTAGATTGCAGCG 59.055 47.619 0.00 0.00 42.62 5.18
2147 3275 4.382345 AAAGGAGCATTTAGATTGCAGC 57.618 40.909 0.00 0.00 42.62 5.25
2202 3330 5.311265 ACAGCTGAATTCAGTGAAAGATGA 58.689 37.500 30.88 2.92 45.45 2.92
2340 3478 1.133730 TGAACCAAAGGGGGTGTACAC 60.134 52.381 18.01 18.01 41.32 2.90
2348 3486 1.969923 TCAGCAAATGAACCAAAGGGG 59.030 47.619 0.00 0.00 36.23 4.79
2354 3492 5.015515 TGACCATTATCAGCAAATGAACCA 58.984 37.500 0.00 0.00 42.53 3.67
2371 3509 4.593206 TCGAAGCTCCCTAAATATGACCAT 59.407 41.667 0.00 0.00 0.00 3.55
2379 3517 1.202428 GCTCGTCGAAGCTCCCTAAAT 60.202 52.381 1.75 0.00 39.27 1.40
2473 3611 5.129368 AGTGCAGTATAAATTGGATGGGT 57.871 39.130 0.00 0.00 0.00 4.51
2523 3662 1.334689 CGCTGGCATGCATAATCAGTG 60.335 52.381 21.36 18.43 0.00 3.66
2524 3663 0.949397 CGCTGGCATGCATAATCAGT 59.051 50.000 21.36 0.00 0.00 3.41
2542 3681 3.362295 CGGTCATAATTGAAACATGCCG 58.638 45.455 0.00 9.14 35.05 5.69
2561 3700 1.588674 TTGTGTTAGAAGTGGTGCGG 58.411 50.000 0.00 0.00 0.00 5.69
2615 3754 8.536407 GTTTCACAACGCTGTAATAAATTTTGT 58.464 29.630 0.00 0.00 33.22 2.83
2616 3755 8.751335 AGTTTCACAACGCTGTAATAAATTTTG 58.249 29.630 0.00 0.00 38.03 2.44
2622 3761 6.202937 CCAAAGTTTCACAACGCTGTAATAA 58.797 36.000 0.00 0.00 38.03 1.40
2627 3792 1.134175 CCCAAAGTTTCACAACGCTGT 59.866 47.619 0.00 0.00 38.03 4.40
2641 3806 2.781681 AGGTTCCGTGTATCCCAAAG 57.218 50.000 0.00 0.00 0.00 2.77
2691 3856 1.476488 ACCAAAGGTTGTGCTGTTGAC 59.524 47.619 0.00 0.00 27.29 3.18
2724 3889 7.007313 ACAAATGTGTTCTTTTGCAATTGAG 57.993 32.000 10.34 0.00 40.22 3.02
2725 3890 6.981762 ACAAATGTGTTCTTTTGCAATTGA 57.018 29.167 10.34 0.00 40.22 2.57
2735 3901 8.050778 TGAAACTGAACTACAAATGTGTTCTT 57.949 30.769 19.67 11.84 39.30 2.52
2740 3906 8.687824 AAAGTTGAAACTGAACTACAAATGTG 57.312 30.769 0.00 0.00 39.66 3.21
2756 3922 4.340950 CCCTGTTAGCCTTGAAAGTTGAAA 59.659 41.667 0.00 0.00 0.00 2.69
2757 3923 3.888930 CCCTGTTAGCCTTGAAAGTTGAA 59.111 43.478 0.00 0.00 0.00 2.69
2758 3924 3.137544 TCCCTGTTAGCCTTGAAAGTTGA 59.862 43.478 0.00 0.00 0.00 3.18
2759 3925 3.486383 TCCCTGTTAGCCTTGAAAGTTG 58.514 45.455 0.00 0.00 0.00 3.16
2760 3926 3.138468 ACTCCCTGTTAGCCTTGAAAGTT 59.862 43.478 0.00 0.00 0.00 2.66
2761 3927 2.711547 ACTCCCTGTTAGCCTTGAAAGT 59.288 45.455 0.00 0.00 0.00 2.66
2762 3928 3.339141 GACTCCCTGTTAGCCTTGAAAG 58.661 50.000 0.00 0.00 0.00 2.62
2797 3963 1.925455 CCCATGTGTCACCCCCTCT 60.925 63.158 0.00 0.00 0.00 3.69
2954 4120 3.795688 AGATCCTGAAAGTGGAAAGCA 57.204 42.857 0.00 0.00 37.13 3.91
3079 4249 3.966006 AGAATATGCAGCTGGAAGAGAGA 59.034 43.478 13.45 0.00 34.07 3.10
3080 4250 4.339872 AGAATATGCAGCTGGAAGAGAG 57.660 45.455 13.45 0.00 34.07 3.20
3183 4353 1.154205 CCATTGCTCGAACCGCCTAG 61.154 60.000 0.00 0.00 0.00 3.02
3242 4412 9.294030 CAATGTATGAAATGTAAAAGAAGAGGC 57.706 33.333 0.00 0.00 0.00 4.70
3597 4788 7.448161 TGACAACAAATATTATAGATGCCCCTG 59.552 37.037 0.00 0.00 0.00 4.45
3639 4830 6.890268 ACTTCCTACCAAACTCTTGTTCTTTT 59.110 34.615 0.00 0.00 34.96 2.27
3758 4951 3.377253 ACCCTCTTACGGATGACTGTA 57.623 47.619 0.00 0.00 36.89 2.74
3868 5061 0.611618 TGAACCGGCTGGCAATTCAT 60.612 50.000 12.89 0.00 39.70 2.57
3879 5072 2.668550 GGGTGAGTGTGAACCGGC 60.669 66.667 0.00 0.00 37.33 6.13
4005 5198 1.254284 ACCGAAGAGGGACTGCTCAG 61.254 60.000 0.00 0.00 46.96 3.35
4043 5236 4.287585 TCCCGGATAGTTTTCCTTTTCAGA 59.712 41.667 0.73 0.00 33.30 3.27
4117 5310 3.622163 CAGCTCAGAAGAATCCATGACAC 59.378 47.826 0.00 0.00 0.00 3.67
4118 5311 3.870274 CAGCTCAGAAGAATCCATGACA 58.130 45.455 0.00 0.00 0.00 3.58
4186 5381 7.761704 TGTCAATTATCAGCAGAGTAAGTTCTC 59.238 37.037 0.00 0.00 34.96 2.87
4216 5411 1.336125 GAGCAATGAGTTAGCATGCCC 59.664 52.381 15.66 2.42 0.00 5.36
4252 5447 0.473755 TCTGAACAAGCTTGGCCTGA 59.526 50.000 29.18 23.01 0.00 3.86
4281 5476 2.807967 GGATTTTCCAAAAGTTGCAGGC 59.192 45.455 0.00 0.00 36.28 4.85
4338 5533 1.732259 GTACAACGGCACTTCATCAGG 59.268 52.381 0.00 0.00 0.00 3.86
4419 5618 4.675976 TTTCCTCGAGTCACAACCTAAA 57.324 40.909 12.31 0.00 0.00 1.85
4522 5726 7.614674 GACAATTGTCAACATCAGAAAGTTC 57.385 36.000 29.43 0.34 44.18 3.01
4544 5748 5.872070 CCTTTACTCTCATGTTCCAAGAGAC 59.128 44.000 13.67 0.00 39.09 3.36
4602 5809 1.701847 AGCACAGAACTCATGGAAGGT 59.298 47.619 0.00 0.00 0.00 3.50
4673 5880 4.527816 GGCCATGGATCATTTTATAAGCCA 59.472 41.667 18.40 0.00 35.58 4.75
4674 5881 4.527816 TGGCCATGGATCATTTTATAAGCC 59.472 41.667 18.40 4.29 36.06 4.35
4702 5910 7.332678 GCCATGCCAAAATATTCTCCATTATTC 59.667 37.037 0.00 0.00 0.00 1.75
4714 5922 4.164604 ACATTTCCAGCCATGCCAAAATAT 59.835 37.500 0.00 0.00 0.00 1.28
4739 5958 9.810231 CCATGCATTTAATTCAAACAACTAAAC 57.190 29.630 0.00 0.00 0.00 2.01
4744 5963 8.086851 AGTTCCATGCATTTAATTCAAACAAC 57.913 30.769 0.00 0.00 0.00 3.32
4765 5984 2.218530 GGCGTTGAAACATTGCAAGTTC 59.781 45.455 4.94 9.10 0.00 3.01
4776 5995 1.797025 AGCTACAGAGGCGTTGAAAC 58.203 50.000 0.00 0.00 34.52 2.78
4783 6002 0.874390 TTTTGCAAGCTACAGAGGCG 59.126 50.000 0.00 0.00 34.52 5.52
4803 6022 9.387397 TGACCATAAGTCCAGACCAATATATTA 57.613 33.333 0.00 0.00 45.68 0.98
4806 6025 7.684317 TTGACCATAAGTCCAGACCAATATA 57.316 36.000 0.00 0.00 45.68 0.86
4811 6030 5.030147 ACTATTGACCATAAGTCCAGACCA 58.970 41.667 0.00 0.00 45.68 4.02
4904 6127 5.010933 AGCTAGTAGCAGTGAAGTACTCAA 58.989 41.667 23.77 0.00 45.56 3.02
4905 6128 4.590918 AGCTAGTAGCAGTGAAGTACTCA 58.409 43.478 23.77 0.00 45.56 3.41
4931 6154 6.016276 CCGTTAGAAAAATATGGGCATTAGCT 60.016 38.462 0.00 0.00 41.70 3.32
4932 6155 6.016610 TCCGTTAGAAAAATATGGGCATTAGC 60.017 38.462 0.00 0.00 41.10 3.09
4952 6291 7.389803 TCAAACAATATGATTGTGATCCGTT 57.610 32.000 5.63 0.00 32.79 4.44
5042 6381 2.106683 GTGTGCACCGACCATAGGC 61.107 63.158 15.69 0.00 0.00 3.93
5055 6407 2.497107 AGCATGAACAAACTGTGTGC 57.503 45.000 0.00 0.00 40.60 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.