Multiple sequence alignment - TraesCS4B01G037100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G037100 chr4B 100.000 4529 0 0 1 4529 26800413 26795885 0.000000e+00 8364.0
1 TraesCS4B01G037100 chr4D 93.757 1826 84 22 2585 4397 15717090 15715282 0.000000e+00 2713.0
2 TraesCS4B01G037100 chr4D 89.377 1638 110 28 423 2028 15719214 15717609 0.000000e+00 2002.0
3 TraesCS4B01G037100 chr4D 88.976 508 34 5 2080 2586 15717606 15717120 3.870000e-170 608.0
4 TraesCS4B01G037100 chr4D 89.024 82 4 2 4323 4399 15714671 15714590 3.730000e-16 97.1
5 TraesCS4B01G037100 chr4D 82.171 129 3 6 1 124 15719637 15719524 4.820000e-15 93.5
6 TraesCS4B01G037100 chr4A 91.686 1744 97 26 2652 4363 584933308 584935035 0.000000e+00 2374.0
7 TraesCS4B01G037100 chr4A 89.772 1887 113 33 732 2586 584931056 584932894 0.000000e+00 2342.0
8 TraesCS4B01G037100 chr3D 84.028 144 18 3 4387 4529 368224715 368224576 2.840000e-27 134.0
9 TraesCS4B01G037100 chr3D 83.453 139 15 7 4395 4529 573093112 573092978 6.150000e-24 122.0
10 TraesCS4B01G037100 chr6A 84.286 140 16 4 4393 4529 471168800 471168664 1.020000e-26 132.0
11 TraesCS4B01G037100 chr6A 82.979 141 16 6 4393 4529 599270839 599270703 2.210000e-23 121.0
12 TraesCS4B01G037100 chr7A 90.816 98 7 2 4132 4228 537668330 537668234 3.680000e-26 130.0
13 TraesCS4B01G037100 chr7A 85.385 130 11 5 4404 4529 635095861 635095986 1.320000e-25 128.0
14 TraesCS4B01G037100 chr5D 90.323 93 9 0 4132 4224 255594300 255594392 6.150000e-24 122.0
15 TraesCS4B01G037100 chr5D 83.704 135 16 5 4398 4529 277076173 277076042 6.150000e-24 122.0
16 TraesCS4B01G037100 chr5B 83.459 133 20 2 4398 4529 565892325 565892194 6.150000e-24 122.0
17 TraesCS4B01G037100 chr2B 89.000 100 10 1 4132 4231 209831978 209832076 6.150000e-24 122.0
18 TraesCS4B01G037100 chr3B 88.776 98 11 0 4132 4229 671359731 671359634 2.210000e-23 121.0
19 TraesCS4B01G037100 chr3B 90.805 87 8 0 4132 4218 674679995 674680081 2.860000e-22 117.0
20 TraesCS4B01G037100 chr2D 90.323 93 8 1 4132 4224 131052005 131052096 2.210000e-23 121.0
21 TraesCS4B01G037100 chr2A 82.143 140 23 2 4392 4529 367647411 367647550 7.960000e-23 119.0
22 TraesCS4B01G037100 chr1B 88.119 101 10 2 4132 4232 612936990 612937088 7.960000e-23 119.0
23 TraesCS4B01G037100 chr5A 83.846 130 13 6 4404 4529 377234999 377234874 2.860000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G037100 chr4B 26795885 26800413 4528 True 8364.00 8364 100.000 1 4529 1 chr4B.!!$R1 4528
1 TraesCS4B01G037100 chr4D 15714590 15719637 5047 True 1102.72 2713 88.661 1 4399 5 chr4D.!!$R1 4398
2 TraesCS4B01G037100 chr4A 584931056 584935035 3979 False 2358.00 2374 90.729 732 4363 2 chr4A.!!$F1 3631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
336 374 0.033109 TGCAGAGGAGAGGGATCGAA 60.033 55.000 0.00 0.0 0.00 3.71 F
855 933 0.103208 CTGTACGCTCCAGACATCCC 59.897 60.000 0.00 0.0 31.38 3.85 F
1005 1086 0.547075 ATCAAGAGCTCAGCATGGCT 59.453 50.000 17.77 0.0 43.62 4.75 F
1797 1901 1.068333 ACGCGAGCTTGCATTTGATTT 60.068 42.857 25.44 0.0 34.15 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1577 1670 1.248486 GGAAGCAAGAAACCACCTCC 58.752 55.000 0.0 0.0 0.00 4.30 R
2570 2676 0.178990 ACCAAAGGACCAACAGGAGC 60.179 55.000 0.0 0.0 0.00 4.70 R
2630 2769 2.036217 ACATGACCACCAAAACATGCAG 59.964 45.455 0.0 0.0 42.28 4.41 R
3597 4073 1.864565 AAAAATGCCACCGCTTGTTC 58.135 45.000 0.0 0.0 35.36 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 2.016165 GCCAAGCGAACAAAAGCGG 61.016 57.895 0.00 0.00 38.61 5.52
38 39 1.652012 CCAAGCGAACAAAAGCGGA 59.348 52.632 0.00 0.00 38.61 5.54
39 40 0.385974 CCAAGCGAACAAAAGCGGAG 60.386 55.000 0.00 0.00 38.61 4.63
134 164 4.503314 CGCCCCGAGGTAACCGAC 62.503 72.222 0.00 0.00 34.57 4.79
155 185 4.964241 CCCCCTCCGATCCCCCTC 62.964 77.778 0.00 0.00 0.00 4.30
156 186 4.964241 CCCCTCCGATCCCCCTCC 62.964 77.778 0.00 0.00 0.00 4.30
157 187 4.964241 CCCTCCGATCCCCCTCCC 62.964 77.778 0.00 0.00 0.00 4.30
158 188 4.964241 CCTCCGATCCCCCTCCCC 62.964 77.778 0.00 0.00 0.00 4.81
159 189 4.964241 CTCCGATCCCCCTCCCCC 62.964 77.778 0.00 0.00 0.00 5.40
161 191 4.964241 CCGATCCCCCTCCCCCTC 62.964 77.778 0.00 0.00 0.00 4.30
162 192 4.964241 CGATCCCCCTCCCCCTCC 62.964 77.778 0.00 0.00 0.00 4.30
163 193 4.601297 GATCCCCCTCCCCCTCCC 62.601 77.778 0.00 0.00 0.00 4.30
186 216 3.154473 CTTCGCCCCCTCCGATCA 61.154 66.667 0.00 0.00 34.35 2.92
187 217 2.685743 TTCGCCCCCTCCGATCAA 60.686 61.111 0.00 0.00 34.35 2.57
188 218 2.252072 CTTCGCCCCCTCCGATCAAA 62.252 60.000 0.00 0.00 34.35 2.69
189 219 2.203070 CGCCCCCTCCGATCAAAG 60.203 66.667 0.00 0.00 0.00 2.77
190 220 2.517166 GCCCCCTCCGATCAAAGC 60.517 66.667 0.00 0.00 0.00 3.51
191 221 2.193248 CCCCCTCCGATCAAAGCC 59.807 66.667 0.00 0.00 0.00 4.35
192 222 2.193248 CCCCTCCGATCAAAGCCC 59.807 66.667 0.00 0.00 0.00 5.19
193 223 2.378634 CCCCTCCGATCAAAGCCCT 61.379 63.158 0.00 0.00 0.00 5.19
194 224 1.609783 CCCTCCGATCAAAGCCCTT 59.390 57.895 0.00 0.00 0.00 3.95
196 226 0.464554 CCTCCGATCAAAGCCCTTCC 60.465 60.000 0.00 0.00 0.00 3.46
197 227 0.464554 CTCCGATCAAAGCCCTTCCC 60.465 60.000 0.00 0.00 0.00 3.97
198 228 0.914417 TCCGATCAAAGCCCTTCCCT 60.914 55.000 0.00 0.00 0.00 4.20
199 229 0.837272 CCGATCAAAGCCCTTCCCTA 59.163 55.000 0.00 0.00 0.00 3.53
271 309 4.886121 GGTTCCGCCCCGTCGATC 62.886 72.222 0.00 0.00 0.00 3.69
272 310 3.834799 GTTCCGCCCCGTCGATCT 61.835 66.667 0.00 0.00 0.00 2.75
273 311 3.833645 TTCCGCCCCGTCGATCTG 61.834 66.667 0.00 0.00 0.00 2.90
281 319 0.179108 CCCGTCGATCTGGGTTTCTC 60.179 60.000 11.16 0.00 40.76 2.87
283 321 0.525668 CGTCGATCTGGGTTTCTCGG 60.526 60.000 0.00 0.00 0.00 4.63
286 324 1.515954 GATCTGGGTTTCTCGGCGA 59.484 57.895 10.14 10.14 0.00 5.54
287 325 0.108329 GATCTGGGTTTCTCGGCGAA 60.108 55.000 12.13 0.00 0.00 4.70
317 355 2.049433 CGTTTCCCGCGAGTGAGT 60.049 61.111 8.23 0.00 0.00 3.41
318 356 2.372690 CGTTTCCCGCGAGTGAGTG 61.373 63.158 8.23 0.00 0.00 3.51
319 357 2.357034 TTTCCCGCGAGTGAGTGC 60.357 61.111 8.23 0.00 0.00 4.40
322 360 4.056125 CCCGCGAGTGAGTGCAGA 62.056 66.667 8.23 0.00 0.00 4.26
325 363 2.965783 GCGAGTGAGTGCAGAGGA 59.034 61.111 0.00 0.00 0.00 3.71
327 365 1.590610 GCGAGTGAGTGCAGAGGAGA 61.591 60.000 0.00 0.00 0.00 3.71
328 366 0.451383 CGAGTGAGTGCAGAGGAGAG 59.549 60.000 0.00 0.00 0.00 3.20
330 368 0.614415 AGTGAGTGCAGAGGAGAGGG 60.614 60.000 0.00 0.00 0.00 4.30
331 369 0.613292 GTGAGTGCAGAGGAGAGGGA 60.613 60.000 0.00 0.00 0.00 4.20
332 370 0.337773 TGAGTGCAGAGGAGAGGGAT 59.662 55.000 0.00 0.00 0.00 3.85
336 374 0.033109 TGCAGAGGAGAGGGATCGAA 60.033 55.000 0.00 0.00 0.00 3.71
337 375 0.387565 GCAGAGGAGAGGGATCGAAC 59.612 60.000 0.00 0.00 0.00 3.95
338 376 1.036707 CAGAGGAGAGGGATCGAACC 58.963 60.000 2.47 2.47 0.00 3.62
340 378 2.136863 AGAGGAGAGGGATCGAACCTA 58.863 52.381 11.90 0.00 38.79 3.08
341 379 2.107552 AGAGGAGAGGGATCGAACCTAG 59.892 54.545 11.90 0.00 38.79 3.02
342 380 1.854280 AGGAGAGGGATCGAACCTAGT 59.146 52.381 11.90 2.96 38.79 2.57
343 381 2.158579 AGGAGAGGGATCGAACCTAGTC 60.159 54.545 11.90 11.10 38.79 2.59
344 382 2.158579 GGAGAGGGATCGAACCTAGTCT 60.159 54.545 11.90 10.89 38.79 3.24
345 383 3.558033 GAGAGGGATCGAACCTAGTCTT 58.442 50.000 11.90 0.00 38.79 3.01
346 384 4.446023 GGAGAGGGATCGAACCTAGTCTTA 60.446 50.000 11.90 0.00 38.79 2.10
348 386 3.564264 AGGGATCGAACCTAGTCTTACC 58.436 50.000 11.90 0.00 36.32 2.85
349 387 2.627221 GGGATCGAACCTAGTCTTACCC 59.373 54.545 11.90 0.00 0.00 3.69
363 409 1.332144 TTACCCCTAATCGCCGCTGT 61.332 55.000 0.00 0.00 0.00 4.40
364 410 0.467844 TACCCCTAATCGCCGCTGTA 60.468 55.000 0.00 0.00 0.00 2.74
365 411 1.332144 ACCCCTAATCGCCGCTGTAA 61.332 55.000 0.00 0.00 0.00 2.41
366 412 0.600255 CCCCTAATCGCCGCTGTAAG 60.600 60.000 0.00 0.00 0.00 2.34
367 413 0.600255 CCCTAATCGCCGCTGTAAGG 60.600 60.000 0.00 0.00 0.00 2.69
376 422 2.902457 CGCTGTAAGGGGGTTGGGT 61.902 63.158 0.00 0.00 44.19 4.51
379 425 0.898326 CTGTAAGGGGGTTGGGTTGC 60.898 60.000 0.00 0.00 0.00 4.17
381 427 0.611062 GTAAGGGGGTTGGGTTGCTC 60.611 60.000 0.00 0.00 0.00 4.26
388 434 2.033448 TTGGGTTGCTCCGCGATT 59.967 55.556 8.23 0.00 37.00 3.34
390 436 2.125106 GGGTTGCTCCGCGATTCT 60.125 61.111 8.23 0.00 37.00 2.40
395 441 3.267860 GCTCCGCGATTCTGCTGG 61.268 66.667 8.23 0.00 0.00 4.85
401 447 2.464459 GCGATTCTGCTGGTTCGGG 61.464 63.158 14.38 0.00 32.45 5.14
402 448 1.079127 CGATTCTGCTGGTTCGGGT 60.079 57.895 7.77 0.00 0.00 5.28
404 450 1.534729 GATTCTGCTGGTTCGGGTTT 58.465 50.000 0.00 0.00 0.00 3.27
405 451 1.200020 GATTCTGCTGGTTCGGGTTTG 59.800 52.381 0.00 0.00 0.00 2.93
408 454 1.515521 CTGCTGGTTCGGGTTTGACC 61.516 60.000 0.00 0.00 37.60 4.02
409 455 1.527380 GCTGGTTCGGGTTTGACCA 60.527 57.895 0.00 0.00 41.02 4.02
419 468 2.553170 GGGTTTGACCAGCAGATCTGC 61.553 57.143 35.57 35.57 45.39 4.26
442 503 2.734379 GTCCGGTAGACGTTTGCTC 58.266 57.895 0.00 0.00 42.24 4.26
447 508 1.623973 GGTAGACGTTTGCTCGTGCC 61.624 60.000 7.05 3.86 44.21 5.01
491 552 1.656095 GAATCGATCGATGCCGGATTC 59.344 52.381 29.99 18.54 35.50 2.52
495 556 3.163832 ATCGATGCCGGATTCCGCA 62.164 57.895 19.80 19.63 46.86 5.69
496 557 3.640000 CGATGCCGGATTCCGCAC 61.640 66.667 19.80 13.69 46.86 5.34
497 558 3.279875 GATGCCGGATTCCGCACC 61.280 66.667 19.80 8.71 46.86 5.01
498 559 4.108299 ATGCCGGATTCCGCACCA 62.108 61.111 19.80 15.14 46.86 4.17
520 581 1.153628 GGCGAATCTGTGCGTACCT 60.154 57.895 0.00 0.00 0.00 3.08
536 597 2.783379 ACCTCTGATGGGATCTGCTA 57.217 50.000 0.00 0.00 0.00 3.49
555 616 0.613260 AGTGCCGCTGGATTCTGTTA 59.387 50.000 0.00 0.00 0.00 2.41
570 631 4.737855 TCTGTTATAAGAGCGCCTTTCT 57.262 40.909 14.87 4.20 36.34 2.52
571 632 4.433615 TCTGTTATAAGAGCGCCTTTCTG 58.566 43.478 14.87 8.72 36.34 3.02
572 633 4.081642 TCTGTTATAAGAGCGCCTTTCTGT 60.082 41.667 14.87 3.25 36.34 3.41
573 634 4.181578 TGTTATAAGAGCGCCTTTCTGTC 58.818 43.478 14.87 0.00 36.34 3.51
577 638 0.952984 AGAGCGCCTTTCTGTCAAGC 60.953 55.000 2.29 0.00 0.00 4.01
581 642 0.239347 CGCCTTTCTGTCAAGCAAGG 59.761 55.000 0.43 0.43 46.33 3.61
591 652 2.118132 CAAGCAAGGCAGTGGTTGT 58.882 52.632 19.15 0.00 46.81 3.32
593 654 1.680735 CAAGCAAGGCAGTGGTTGTAA 59.319 47.619 19.15 0.00 46.81 2.41
594 655 1.318576 AGCAAGGCAGTGGTTGTAAC 58.681 50.000 0.00 0.00 0.00 2.50
596 657 1.681264 GCAAGGCAGTGGTTGTAACTT 59.319 47.619 0.00 0.00 0.00 2.66
597 658 2.543653 GCAAGGCAGTGGTTGTAACTTG 60.544 50.000 0.00 0.00 37.77 3.16
598 659 2.687935 CAAGGCAGTGGTTGTAACTTGT 59.312 45.455 0.00 0.00 33.98 3.16
599 660 3.849563 AGGCAGTGGTTGTAACTTGTA 57.150 42.857 0.00 0.00 0.00 2.41
600 661 4.159244 AGGCAGTGGTTGTAACTTGTAA 57.841 40.909 0.00 0.00 0.00 2.41
601 662 4.134563 AGGCAGTGGTTGTAACTTGTAAG 58.865 43.478 0.00 0.00 0.00 2.34
603 664 4.213482 GGCAGTGGTTGTAACTTGTAAGAG 59.787 45.833 0.00 0.00 0.00 2.85
605 666 5.277345 GCAGTGGTTGTAACTTGTAAGAGTG 60.277 44.000 0.00 0.00 0.00 3.51
606 667 5.815740 CAGTGGTTGTAACTTGTAAGAGTGT 59.184 40.000 0.00 0.00 0.00 3.55
607 668 6.315393 CAGTGGTTGTAACTTGTAAGAGTGTT 59.685 38.462 0.00 0.00 0.00 3.32
608 669 6.882678 AGTGGTTGTAACTTGTAAGAGTGTTT 59.117 34.615 0.00 0.00 0.00 2.83
609 670 7.392393 AGTGGTTGTAACTTGTAAGAGTGTTTT 59.608 33.333 0.00 0.00 0.00 2.43
610 671 8.667463 GTGGTTGTAACTTGTAAGAGTGTTTTA 58.333 33.333 0.00 0.00 0.00 1.52
611 672 9.228949 TGGTTGTAACTTGTAAGAGTGTTTTAA 57.771 29.630 0.00 0.00 0.00 1.52
627 688 9.459640 GAGTGTTTTAATTGTTAGGGTTTCTTC 57.540 33.333 0.00 0.00 0.00 2.87
655 716 4.158764 CCCTCACTGAGTAGGAGTTACTTG 59.841 50.000 5.32 0.00 42.69 3.16
665 726 8.304596 TGAGTAGGAGTTACTTGTGTAATTCTG 58.695 37.037 9.92 0.00 42.69 3.02
673 734 3.885297 ACTTGTGTAATTCTGCTTGCTGT 59.115 39.130 0.00 0.00 0.00 4.40
677 738 2.030893 TGTAATTCTGCTTGCTGTGTGC 60.031 45.455 0.00 0.00 43.25 4.57
694 755 1.146930 GCGAGCCTTCCATGATGGA 59.853 57.895 10.75 10.75 46.61 3.41
717 778 0.958091 TCGGATTGTTTGTGCCAAGG 59.042 50.000 0.00 0.00 0.00 3.61
724 785 0.179086 GTTTGTGCCAAGGGGTGTTG 60.179 55.000 0.00 0.00 36.17 3.33
740 801 3.350912 GTGTTGCGCCTTTATTATGTCG 58.649 45.455 4.18 0.00 0.00 4.35
741 802 3.004171 TGTTGCGCCTTTATTATGTCGT 58.996 40.909 4.18 0.00 0.00 4.34
742 803 3.062909 TGTTGCGCCTTTATTATGTCGTC 59.937 43.478 4.18 0.00 0.00 4.20
756 817 1.616374 TGTCGTCACTGCATTACTGGA 59.384 47.619 0.00 0.00 0.00 3.86
762 823 5.088739 CGTCACTGCATTACTGGAAAAATC 58.911 41.667 0.00 0.00 0.00 2.17
789 850 5.244626 CCTTGCCTTTTATGGATGAATAGGG 59.755 44.000 0.00 0.00 0.00 3.53
792 853 6.542821 TGCCTTTTATGGATGAATAGGGTAG 58.457 40.000 0.00 0.00 0.00 3.18
826 889 9.940166 AAACGTCAATTATCTTTTAACGACTTT 57.060 25.926 0.00 0.00 33.25 2.66
854 932 0.528684 GCTGTACGCTCCAGACATCC 60.529 60.000 1.18 0.00 35.14 3.51
855 933 0.103208 CTGTACGCTCCAGACATCCC 59.897 60.000 0.00 0.00 31.38 3.85
864 942 1.511305 CAGACATCCCGTACACGCT 59.489 57.895 0.00 0.00 38.18 5.07
885 963 5.298347 GCTGGAGTATGATTAACTACCACC 58.702 45.833 0.00 0.00 0.00 4.61
892 970 4.202245 TGATTAACTACCACCAGCACTC 57.798 45.455 0.00 0.00 0.00 3.51
894 972 2.018355 TAACTACCACCAGCACTCCA 57.982 50.000 0.00 0.00 0.00 3.86
896 974 0.615331 ACTACCACCAGCACTCCATG 59.385 55.000 0.00 0.00 0.00 3.66
903 981 0.911769 CCAGCACTCCATGGGTCTTA 59.088 55.000 13.02 0.00 32.63 2.10
907 985 2.026822 AGCACTCCATGGGTCTTAACAG 60.027 50.000 13.02 1.17 0.00 3.16
909 987 3.370953 GCACTCCATGGGTCTTAACAGAT 60.371 47.826 13.02 0.00 0.00 2.90
950 1028 2.146073 CTTTGGTTTGCTGCCCTCCG 62.146 60.000 0.00 0.00 0.00 4.63
980 1061 4.054671 GTGACATAGCCTCTTGATAGCAC 58.945 47.826 0.00 0.00 0.00 4.40
986 1067 2.040278 AGCCTCTTGATAGCACACCAAA 59.960 45.455 0.00 0.00 0.00 3.28
994 1075 3.691118 TGATAGCACACCAAATCAAGAGC 59.309 43.478 0.00 0.00 0.00 4.09
996 1077 2.157738 AGCACACCAAATCAAGAGCTC 58.842 47.619 5.27 5.27 0.00 4.09
998 1079 2.095364 GCACACCAAATCAAGAGCTCAG 60.095 50.000 17.77 8.24 0.00 3.35
1005 1086 0.547075 ATCAAGAGCTCAGCATGGCT 59.453 50.000 17.77 0.00 43.62 4.75
1032 1113 2.513666 GCGGATTCGATGGTGGCA 60.514 61.111 0.00 0.00 39.00 4.92
1134 1215 4.561752 ACAATACTCTCTCTAATGCCCCT 58.438 43.478 0.00 0.00 0.00 4.79
1274 1355 4.305989 CAACCTTGCAACATGTGTAAGT 57.694 40.909 17.73 3.99 45.63 2.24
1309 1390 2.762535 ACTGGTATTCTCGGTTGGTG 57.237 50.000 0.00 0.00 0.00 4.17
1366 1447 3.625313 TCTTGCTCGTTGAATGTTGTTCA 59.375 39.130 0.00 0.00 0.00 3.18
1428 1520 2.831526 GGATGGGTTTTGGTTACAGCAT 59.168 45.455 0.00 0.00 0.00 3.79
1429 1521 3.260632 GGATGGGTTTTGGTTACAGCATT 59.739 43.478 0.00 0.00 0.00 3.56
1430 1522 4.262851 GGATGGGTTTTGGTTACAGCATTT 60.263 41.667 0.00 0.00 0.00 2.32
1431 1523 4.762289 TGGGTTTTGGTTACAGCATTTT 57.238 36.364 0.00 0.00 0.00 1.82
1432 1524 5.871396 TGGGTTTTGGTTACAGCATTTTA 57.129 34.783 0.00 0.00 0.00 1.52
1433 1525 6.426646 TGGGTTTTGGTTACAGCATTTTAT 57.573 33.333 0.00 0.00 0.00 1.40
1434 1526 6.459923 TGGGTTTTGGTTACAGCATTTTATC 58.540 36.000 0.00 0.00 0.00 1.75
1435 1527 6.268847 TGGGTTTTGGTTACAGCATTTTATCT 59.731 34.615 0.00 0.00 0.00 1.98
1436 1528 6.811665 GGGTTTTGGTTACAGCATTTTATCTC 59.188 38.462 0.00 0.00 0.00 2.75
1437 1529 7.375053 GGTTTTGGTTACAGCATTTTATCTCA 58.625 34.615 0.00 0.00 0.00 3.27
1576 1669 3.726291 ACGCCAGTTGTTAATTTGCTT 57.274 38.095 0.00 0.00 0.00 3.91
1577 1670 3.380142 ACGCCAGTTGTTAATTTGCTTG 58.620 40.909 0.00 0.00 0.00 4.01
1596 1689 1.248486 GGAGGTGGTTTCTTGCTTCC 58.752 55.000 0.00 0.00 0.00 3.46
1613 1706 2.122783 TCCCCGTGACCATTTTCATC 57.877 50.000 0.00 0.00 0.00 2.92
1652 1745 3.845178 TCTGTCTACAATGGTTACAGCG 58.155 45.455 9.53 0.00 38.60 5.18
1661 1765 4.868171 ACAATGGTTACAGCGTAGTATGTG 59.132 41.667 0.00 0.00 32.33 3.21
1726 1830 8.648557 TCGATATTTTGTAGATCTGAGTTTGG 57.351 34.615 5.18 0.00 0.00 3.28
1731 1835 4.737855 TGTAGATCTGAGTTTGGTAGGC 57.262 45.455 5.18 0.00 0.00 3.93
1797 1901 1.068333 ACGCGAGCTTGCATTTGATTT 60.068 42.857 25.44 0.00 34.15 2.17
1803 1907 5.220662 GCGAGCTTGCATTTGATTTAGAGTA 60.221 40.000 21.53 0.00 34.15 2.59
1849 1954 6.872020 GCGCCTTGATGAACCTATATTTACTA 59.128 38.462 0.00 0.00 0.00 1.82
1881 1986 9.577110 TGAATCATTTGCAGAAGATATTTTGTC 57.423 29.630 0.00 0.00 0.00 3.18
1984 2089 6.356556 TGACCTGAACTTTTCTTTGATCTCA 58.643 36.000 0.00 0.00 0.00 3.27
1991 2096 4.518211 ACTTTTCTTTGATCTCACTGCTGG 59.482 41.667 0.00 0.00 0.00 4.85
1995 2100 1.361204 TTGATCTCACTGCTGGGGAA 58.639 50.000 0.00 0.00 0.00 3.97
2028 2133 4.098807 AGTGCATTTTACTTCCGGTGTTTT 59.901 37.500 0.00 0.00 0.00 2.43
2029 2134 4.806775 GTGCATTTTACTTCCGGTGTTTTT 59.193 37.500 0.00 0.00 0.00 1.94
2030 2135 4.806247 TGCATTTTACTTCCGGTGTTTTTG 59.194 37.500 0.00 0.66 0.00 2.44
2031 2136 4.318475 GCATTTTACTTCCGGTGTTTTTGC 60.318 41.667 0.00 6.46 0.00 3.68
2032 2137 4.451629 TTTTACTTCCGGTGTTTTTGCA 57.548 36.364 0.00 0.00 0.00 4.08
2033 2138 4.657436 TTTACTTCCGGTGTTTTTGCAT 57.343 36.364 0.00 0.00 0.00 3.96
2034 2139 2.507339 ACTTCCGGTGTTTTTGCATG 57.493 45.000 0.00 0.00 0.00 4.06
2035 2140 1.068434 ACTTCCGGTGTTTTTGCATGG 59.932 47.619 0.00 0.00 0.00 3.66
2036 2141 1.339610 CTTCCGGTGTTTTTGCATGGA 59.660 47.619 0.00 0.00 0.00 3.41
2037 2142 1.403814 TCCGGTGTTTTTGCATGGAA 58.596 45.000 0.00 0.00 0.00 3.53
2038 2143 1.757118 TCCGGTGTTTTTGCATGGAAA 59.243 42.857 8.47 8.47 0.00 3.13
2039 2144 2.366916 TCCGGTGTTTTTGCATGGAAAT 59.633 40.909 13.51 0.00 0.00 2.17
2040 2145 3.574396 TCCGGTGTTTTTGCATGGAAATA 59.426 39.130 13.51 5.97 0.00 1.40
2041 2146 3.925913 CCGGTGTTTTTGCATGGAAATAG 59.074 43.478 13.51 2.24 0.00 1.73
2076 2181 7.445707 TGCTTACAACAGTGTTGTTATTATCCA 59.554 33.333 38.53 24.03 45.53 3.41
2180 2286 7.781056 TGGTGAATGCTCCCTTTAATAATTTC 58.219 34.615 0.00 0.00 0.00 2.17
2190 2296 9.671279 CTCCCTTTAATAATTTCAAAATTGCCT 57.329 29.630 10.27 0.00 38.90 4.75
2222 2328 7.918562 TGAGAAGTTACAAAAATACAGGCAAAC 59.081 33.333 0.00 0.00 0.00 2.93
2275 2381 7.736031 GTTGAAAACTTTTGTACAGAAGGTC 57.264 36.000 25.10 19.28 45.32 3.85
2281 2387 5.302360 ACTTTTGTACAGAAGGTCGCATTA 58.698 37.500 25.10 0.00 0.00 1.90
2294 2400 9.174166 AGAAGGTCGCATTAATAAATTACAAGT 57.826 29.630 0.00 0.00 0.00 3.16
2298 2404 8.395633 GGTCGCATTAATAAATTACAAGTCACT 58.604 33.333 0.00 0.00 0.00 3.41
2400 2506 3.587933 GCGCACCCCAACAACGAA 61.588 61.111 0.30 0.00 0.00 3.85
2415 2521 7.063308 CCCAACAACGAATGATTTATTTGGAAG 59.937 37.037 0.00 0.00 34.91 3.46
2416 2522 7.812191 CCAACAACGAATGATTTATTTGGAAGA 59.188 33.333 0.00 0.00 34.91 2.87
2505 2611 4.341806 TGTTCATTGCTGAAATGGTGTCTT 59.658 37.500 8.48 0.00 45.00 3.01
2506 2612 4.508461 TCATTGCTGAAATGGTGTCTTG 57.492 40.909 8.48 0.00 45.00 3.02
2507 2613 4.143543 TCATTGCTGAAATGGTGTCTTGA 58.856 39.130 8.48 0.00 45.00 3.02
2527 2633 9.129209 GTCTTGAGTTAAATGGTTTTCTTATGC 57.871 33.333 0.00 0.00 0.00 3.14
2570 2676 2.709475 GGCGCTCACTATTTGCCG 59.291 61.111 7.64 0.00 35.77 5.69
2604 2743 6.156519 GTCCTTTGGTTGGCAAATTAGTAAG 58.843 40.000 0.00 0.60 0.00 2.34
2630 2769 2.987232 AGTCTCCCGAATAAAGCAACC 58.013 47.619 0.00 0.00 0.00 3.77
2650 2790 2.610976 CCTGCATGTTTTGGTGGTCATG 60.611 50.000 0.00 0.00 40.09 3.07
2657 3111 2.291209 TTTGGTGGTCATGTGATGCT 57.709 45.000 0.00 0.00 0.00 3.79
2709 3163 1.998315 CTGTCTGTGCTGCATGTACTC 59.002 52.381 5.27 0.00 32.31 2.59
2769 3225 3.563808 TCGGTGAATTGTTTCAAGTCCTG 59.436 43.478 7.31 4.90 43.29 3.86
2833 3289 8.510505 GTGCAAGTTAAAAATCATTCTCTCTCT 58.489 33.333 0.00 0.00 0.00 3.10
2834 3290 9.071276 TGCAAGTTAAAAATCATTCTCTCTCTT 57.929 29.630 0.00 0.00 0.00 2.85
2894 3351 5.114764 TGGATCATCACAGGCATTTCTTA 57.885 39.130 0.00 0.00 0.00 2.10
2928 3386 6.054941 TCAGTTTCAGCATGTCTAACTTCAA 58.945 36.000 0.00 0.00 37.40 2.69
3007 3478 6.610741 TTTGTGTTGGCCATATTTTGTTTC 57.389 33.333 6.09 0.00 0.00 2.78
3120 3591 3.157087 CACCATGCCTACTTTCCTTGTT 58.843 45.455 0.00 0.00 0.00 2.83
3405 3876 1.398390 GTGCTTATGGGCTTCAACTCG 59.602 52.381 0.00 0.00 0.00 4.18
3537 4013 1.465794 AGAGGGAGTAAGTCGTCTGC 58.534 55.000 0.00 0.00 0.00 4.26
3563 4039 1.293498 CGGTGTTCTCCAGGACCAG 59.707 63.158 0.00 0.00 0.00 4.00
3564 4040 1.185618 CGGTGTTCTCCAGGACCAGA 61.186 60.000 0.00 0.00 0.00 3.86
3565 4041 1.056660 GGTGTTCTCCAGGACCAGAA 58.943 55.000 0.00 0.00 0.00 3.02
3584 4060 5.587844 CCAGAAGAAATCTAATGTCCACCAG 59.412 44.000 0.00 0.00 36.32 4.00
3587 4063 3.525199 AGAAATCTAATGTCCACCAGGCT 59.475 43.478 0.00 0.00 33.74 4.58
3721 4198 3.078837 CGCCCTGTTTTGTACCATACTT 58.921 45.455 0.00 0.00 0.00 2.24
3766 4243 3.913163 GGAGTGTTCGTCTCTTACTTTCG 59.087 47.826 0.00 0.00 33.06 3.46
3788 4265 1.818060 TCTGCAGCAGTTTGTGTTTGT 59.182 42.857 22.10 0.00 32.61 2.83
3885 4368 3.378512 TGCTGGAGTGGTGATAGATTCT 58.621 45.455 0.00 0.00 0.00 2.40
3898 4381 6.761714 GGTGATAGATTCTTGTTCGTGGTAAT 59.238 38.462 0.00 0.00 0.00 1.89
3908 4391 7.383687 TCTTGTTCGTGGTAATAGTTGATTCT 58.616 34.615 0.00 0.00 0.00 2.40
3947 4430 7.759886 CGATTCTATTTGTGAACTAGTTCCTGA 59.240 37.037 28.43 14.64 38.77 3.86
3976 4459 7.499321 TGGTGTGTATTACGTTTGATCTTTT 57.501 32.000 0.00 0.00 0.00 2.27
4026 4509 6.095440 GGCTATGAGTCTTGGAGCAATTTTAA 59.905 38.462 3.89 0.00 34.76 1.52
4070 4553 1.269257 GCTCACACAAGCAAAAGGGTC 60.269 52.381 0.00 0.00 42.05 4.46
4071 4554 2.023673 CTCACACAAGCAAAAGGGTCA 58.976 47.619 0.00 0.00 0.00 4.02
4114 4597 1.771291 GAAAACGAAGGTTGAAACGCG 59.229 47.619 3.53 3.53 36.25 6.01
4126 4609 3.281359 AAACGCGGCCATTTCTGCC 62.281 57.895 12.47 0.00 45.70 4.85
4129 4612 3.149648 GCGGCCATTTCTGCCCAT 61.150 61.111 2.24 0.00 46.48 4.00
4140 4623 4.703379 TTTCTGCCCATCATTGGTTTTT 57.297 36.364 0.00 0.00 41.91 1.94
4144 4627 1.003464 GCCCATCATTGGTTTTTGCCT 59.997 47.619 0.00 0.00 41.91 4.75
4152 4635 4.637977 TCATTGGTTTTTGCCTGGTTTTTC 59.362 37.500 0.00 0.00 0.00 2.29
4153 4636 3.703001 TGGTTTTTGCCTGGTTTTTCA 57.297 38.095 0.00 0.00 0.00 2.69
4157 4640 5.819901 TGGTTTTTGCCTGGTTTTTCATAAG 59.180 36.000 0.00 0.00 0.00 1.73
4168 4651 7.449086 CCTGGTTTTTCATAAGTTAACTGGGTA 59.551 37.037 9.34 0.00 0.00 3.69
4170 4653 9.369672 TGGTTTTTCATAAGTTAACTGGGTAAT 57.630 29.630 9.34 0.00 0.00 1.89
4219 4707 5.482686 GCAAAACTTTTGCCTTCATTTCA 57.517 34.783 23.40 0.00 39.38 2.69
4222 4710 6.183360 GCAAAACTTTTGCCTTCATTTCAGAA 60.183 34.615 23.40 0.00 39.38 3.02
4224 4712 8.400186 CAAAACTTTTGCCTTCATTTCAGAAAT 58.600 29.630 2.20 2.20 0.00 2.17
4225 4713 9.612066 AAAACTTTTGCCTTCATTTCAGAAATA 57.388 25.926 8.12 0.00 0.00 1.40
4227 4715 9.783081 AACTTTTGCCTTCATTTCAGAAATAAT 57.217 25.926 8.12 0.00 0.00 1.28
4268 4758 1.701847 CCCTATACCATGCTTCTGGCT 59.298 52.381 1.10 0.00 40.15 4.75
4278 4768 2.024918 CTTCTGGCTTGTGCACGTT 58.975 52.632 13.13 0.00 41.91 3.99
4364 4855 3.972133 TCAATGCTTCAATCCATGAGGT 58.028 40.909 0.00 0.00 39.77 3.85
4368 4859 1.202222 GCTTCAATCCATGAGGTTGCG 60.202 52.381 0.00 0.00 39.77 4.85
4369 4860 2.358957 CTTCAATCCATGAGGTTGCGA 58.641 47.619 0.00 0.00 39.77 5.10
4370 4861 1.737838 TCAATCCATGAGGTTGCGAC 58.262 50.000 0.00 0.00 35.89 5.19
4371 4862 1.278985 TCAATCCATGAGGTTGCGACT 59.721 47.619 3.59 0.00 35.89 4.18
4391 5577 3.769844 ACTAGGAGTGGAAATCGACACAT 59.230 43.478 6.66 0.00 39.99 3.21
4399 5585 6.931838 AGTGGAAATCGACACATTACTTAGA 58.068 36.000 6.66 0.00 39.99 2.10
4400 5586 7.036220 AGTGGAAATCGACACATTACTTAGAG 58.964 38.462 6.66 0.00 39.99 2.43
4401 5587 5.810587 TGGAAATCGACACATTACTTAGAGC 59.189 40.000 0.00 0.00 0.00 4.09
4402 5588 6.043411 GGAAATCGACACATTACTTAGAGCT 58.957 40.000 0.00 0.00 0.00 4.09
4403 5589 6.535508 GGAAATCGACACATTACTTAGAGCTT 59.464 38.462 0.00 0.00 0.00 3.74
4404 5590 6.893958 AATCGACACATTACTTAGAGCTTG 57.106 37.500 0.00 0.00 0.00 4.01
4405 5591 5.386958 TCGACACATTACTTAGAGCTTGT 57.613 39.130 0.00 0.00 0.00 3.16
4406 5592 5.779922 TCGACACATTACTTAGAGCTTGTT 58.220 37.500 0.00 0.00 0.00 2.83
4407 5593 6.220930 TCGACACATTACTTAGAGCTTGTTT 58.779 36.000 0.00 0.00 0.00 2.83
4408 5594 6.145534 TCGACACATTACTTAGAGCTTGTTTG 59.854 38.462 0.00 0.00 0.00 2.93
4409 5595 6.560253 ACACATTACTTAGAGCTTGTTTGG 57.440 37.500 0.00 0.00 0.00 3.28
4410 5596 5.473504 ACACATTACTTAGAGCTTGTTTGGG 59.526 40.000 0.00 0.00 0.00 4.12
4411 5597 5.705441 CACATTACTTAGAGCTTGTTTGGGA 59.295 40.000 0.00 0.00 0.00 4.37
4412 5598 5.705905 ACATTACTTAGAGCTTGTTTGGGAC 59.294 40.000 0.00 0.00 0.00 4.46
4413 5599 5.562298 TTACTTAGAGCTTGTTTGGGACT 57.438 39.130 0.00 0.00 0.00 3.85
4414 5600 3.744660 ACTTAGAGCTTGTTTGGGACTG 58.255 45.455 0.00 0.00 0.00 3.51
4415 5601 2.185004 TAGAGCTTGTTTGGGACTGC 57.815 50.000 0.00 0.00 0.00 4.40
4416 5602 0.475906 AGAGCTTGTTTGGGACTGCT 59.524 50.000 0.00 0.00 39.89 4.24
4417 5603 0.877743 GAGCTTGTTTGGGACTGCTC 59.122 55.000 0.00 0.00 42.95 4.26
4418 5604 0.475906 AGCTTGTTTGGGACTGCTCT 59.524 50.000 0.00 0.00 35.14 4.09
4419 5605 0.595095 GCTTGTTTGGGACTGCTCTG 59.405 55.000 0.00 0.00 0.00 3.35
4420 5606 0.595095 CTTGTTTGGGACTGCTCTGC 59.405 55.000 0.00 0.00 0.00 4.26
4421 5607 0.183492 TTGTTTGGGACTGCTCTGCT 59.817 50.000 0.00 0.00 0.00 4.24
4422 5608 0.183492 TGTTTGGGACTGCTCTGCTT 59.817 50.000 0.00 0.00 0.00 3.91
4423 5609 0.877743 GTTTGGGACTGCTCTGCTTC 59.122 55.000 0.00 0.00 0.00 3.86
4424 5610 0.767375 TTTGGGACTGCTCTGCTTCT 59.233 50.000 0.00 0.00 0.00 2.85
4425 5611 0.767375 TTGGGACTGCTCTGCTTCTT 59.233 50.000 0.00 0.00 0.00 2.52
4426 5612 1.644509 TGGGACTGCTCTGCTTCTTA 58.355 50.000 0.00 0.00 0.00 2.10
4427 5613 1.977854 TGGGACTGCTCTGCTTCTTAA 59.022 47.619 0.00 0.00 0.00 1.85
4428 5614 2.371841 TGGGACTGCTCTGCTTCTTAAA 59.628 45.455 0.00 0.00 0.00 1.52
4429 5615 3.181445 TGGGACTGCTCTGCTTCTTAAAA 60.181 43.478 0.00 0.00 0.00 1.52
4430 5616 4.013050 GGGACTGCTCTGCTTCTTAAAAT 58.987 43.478 0.00 0.00 0.00 1.82
4431 5617 4.460731 GGGACTGCTCTGCTTCTTAAAATT 59.539 41.667 0.00 0.00 0.00 1.82
4432 5618 5.047731 GGGACTGCTCTGCTTCTTAAAATTT 60.048 40.000 0.00 0.00 0.00 1.82
4433 5619 6.151144 GGGACTGCTCTGCTTCTTAAAATTTA 59.849 38.462 0.00 0.00 0.00 1.40
4434 5620 7.309194 GGGACTGCTCTGCTTCTTAAAATTTAA 60.309 37.037 0.00 0.00 0.00 1.52
4435 5621 7.539022 GGACTGCTCTGCTTCTTAAAATTTAAC 59.461 37.037 0.00 0.00 0.00 2.01
4436 5622 8.171164 ACTGCTCTGCTTCTTAAAATTTAACT 57.829 30.769 0.00 0.00 0.00 2.24
4437 5623 8.293157 ACTGCTCTGCTTCTTAAAATTTAACTC 58.707 33.333 0.00 0.00 0.00 3.01
4438 5624 7.593825 TGCTCTGCTTCTTAAAATTTAACTCC 58.406 34.615 0.00 0.00 0.00 3.85
4439 5625 6.743172 GCTCTGCTTCTTAAAATTTAACTCCG 59.257 38.462 0.00 0.00 0.00 4.63
4440 5626 6.608610 TCTGCTTCTTAAAATTTAACTCCGC 58.391 36.000 0.00 0.00 0.00 5.54
4441 5627 6.430000 TCTGCTTCTTAAAATTTAACTCCGCT 59.570 34.615 0.00 0.00 0.00 5.52
4442 5628 6.977213 TGCTTCTTAAAATTTAACTCCGCTT 58.023 32.000 0.00 0.00 0.00 4.68
4443 5629 7.081976 TGCTTCTTAAAATTTAACTCCGCTTC 58.918 34.615 0.00 0.00 0.00 3.86
4444 5630 7.081976 GCTTCTTAAAATTTAACTCCGCTTCA 58.918 34.615 0.00 0.00 0.00 3.02
4445 5631 7.593644 GCTTCTTAAAATTTAACTCCGCTTCAA 59.406 33.333 0.00 0.00 0.00 2.69
4446 5632 9.458374 CTTCTTAAAATTTAACTCCGCTTCAAA 57.542 29.630 0.00 0.00 0.00 2.69
4447 5633 9.804758 TTCTTAAAATTTAACTCCGCTTCAAAA 57.195 25.926 0.00 0.00 0.00 2.44
4448 5634 9.458374 TCTTAAAATTTAACTCCGCTTCAAAAG 57.542 29.630 0.00 0.00 0.00 2.27
4449 5635 9.458374 CTTAAAATTTAACTCCGCTTCAAAAGA 57.542 29.630 0.00 0.00 0.00 2.52
4450 5636 9.974980 TTAAAATTTAACTCCGCTTCAAAAGAT 57.025 25.926 0.00 0.00 0.00 2.40
4451 5637 8.887036 AAAATTTAACTCCGCTTCAAAAGATT 57.113 26.923 0.00 0.00 0.00 2.40
4452 5638 9.974980 AAAATTTAACTCCGCTTCAAAAGATTA 57.025 25.926 0.00 0.00 0.00 1.75
4453 5639 9.974980 AAATTTAACTCCGCTTCAAAAGATTAA 57.025 25.926 0.00 0.00 0.00 1.40
4454 5640 9.974980 AATTTAACTCCGCTTCAAAAGATTAAA 57.025 25.926 0.00 0.00 0.00 1.52
4455 5641 9.626045 ATTTAACTCCGCTTCAAAAGATTAAAG 57.374 29.630 0.00 0.00 0.00 1.85
4456 5642 5.048153 ACTCCGCTTCAAAAGATTAAAGC 57.952 39.130 0.00 0.00 40.50 3.51
4457 5643 4.082733 ACTCCGCTTCAAAAGATTAAAGCC 60.083 41.667 0.00 0.00 40.75 4.35
4458 5644 3.823873 TCCGCTTCAAAAGATTAAAGCCA 59.176 39.130 0.00 0.00 40.75 4.75
4459 5645 4.279671 TCCGCTTCAAAAGATTAAAGCCAA 59.720 37.500 0.00 0.00 40.75 4.52
4460 5646 4.987912 CCGCTTCAAAAGATTAAAGCCAAA 59.012 37.500 0.00 0.00 40.75 3.28
4461 5647 5.107491 CCGCTTCAAAAGATTAAAGCCAAAC 60.107 40.000 0.00 0.00 40.75 2.93
4462 5648 5.387342 CGCTTCAAAAGATTAAAGCCAAACG 60.387 40.000 0.00 0.00 40.75 3.60
4463 5649 5.107491 GCTTCAAAAGATTAAAGCCAAACGG 60.107 40.000 0.00 0.00 38.51 4.44
4464 5650 5.776173 TCAAAAGATTAAAGCCAAACGGA 57.224 34.783 0.00 0.00 0.00 4.69
4465 5651 6.339587 TCAAAAGATTAAAGCCAAACGGAT 57.660 33.333 0.00 0.00 0.00 4.18
4466 5652 7.455641 TCAAAAGATTAAAGCCAAACGGATA 57.544 32.000 0.00 0.00 0.00 2.59
4467 5653 7.535139 TCAAAAGATTAAAGCCAAACGGATAG 58.465 34.615 0.00 0.00 0.00 2.08
4468 5654 5.500645 AAGATTAAAGCCAAACGGATAGC 57.499 39.130 0.00 0.00 0.00 2.97
4469 5655 4.781934 AGATTAAAGCCAAACGGATAGCT 58.218 39.130 0.00 0.00 37.10 3.32
4470 5656 4.576463 AGATTAAAGCCAAACGGATAGCTG 59.424 41.667 0.00 0.00 35.30 4.24
4471 5657 0.811281 AAAGCCAAACGGATAGCTGC 59.189 50.000 0.00 0.00 35.30 5.25
4472 5658 0.322456 AAGCCAAACGGATAGCTGCA 60.322 50.000 1.02 0.00 35.30 4.41
4473 5659 0.107017 AGCCAAACGGATAGCTGCAT 60.107 50.000 1.02 0.00 33.41 3.96
4474 5660 0.029834 GCCAAACGGATAGCTGCATG 59.970 55.000 1.02 0.00 0.00 4.06
4475 5661 1.667236 CCAAACGGATAGCTGCATGA 58.333 50.000 1.02 0.00 0.00 3.07
4476 5662 2.224606 CCAAACGGATAGCTGCATGAT 58.775 47.619 1.02 0.00 0.00 2.45
4477 5663 3.402110 CCAAACGGATAGCTGCATGATA 58.598 45.455 1.02 0.00 0.00 2.15
4478 5664 4.005650 CCAAACGGATAGCTGCATGATAT 58.994 43.478 1.02 0.00 0.00 1.63
4479 5665 4.142752 CCAAACGGATAGCTGCATGATATG 60.143 45.833 1.02 0.00 0.00 1.78
4488 5674 4.681421 CATGATATGCGGCTCCGT 57.319 55.556 10.24 0.00 42.09 4.69
4489 5675 3.812577 CATGATATGCGGCTCCGTA 57.187 52.632 10.24 5.82 42.09 4.02
4490 5676 2.078849 CATGATATGCGGCTCCGTAA 57.921 50.000 10.24 0.00 42.09 3.18
4491 5677 1.995484 CATGATATGCGGCTCCGTAAG 59.005 52.381 10.24 0.00 42.09 2.34
4492 5678 1.324383 TGATATGCGGCTCCGTAAGA 58.676 50.000 10.24 0.00 42.09 2.10
4493 5679 1.684450 TGATATGCGGCTCCGTAAGAA 59.316 47.619 10.24 0.00 42.09 2.52
4494 5680 2.101750 TGATATGCGGCTCCGTAAGAAA 59.898 45.455 10.24 0.00 42.09 2.52
4495 5681 2.676632 TATGCGGCTCCGTAAGAAAA 57.323 45.000 10.24 0.00 42.09 2.29
4496 5682 1.816074 ATGCGGCTCCGTAAGAAAAA 58.184 45.000 10.24 0.00 42.09 1.94
4497 5683 0.869730 TGCGGCTCCGTAAGAAAAAC 59.130 50.000 10.24 0.00 42.09 2.43
4498 5684 1.154197 GCGGCTCCGTAAGAAAAACT 58.846 50.000 10.24 0.00 42.09 2.66
4499 5685 2.288948 TGCGGCTCCGTAAGAAAAACTA 60.289 45.455 10.24 0.00 42.09 2.24
4500 5686 2.738314 GCGGCTCCGTAAGAAAAACTAA 59.262 45.455 10.24 0.00 42.09 2.24
4501 5687 3.187022 GCGGCTCCGTAAGAAAAACTAAA 59.813 43.478 10.24 0.00 42.09 1.85
4502 5688 4.319694 GCGGCTCCGTAAGAAAAACTAAAA 60.320 41.667 10.24 0.00 42.09 1.52
4503 5689 5.618418 GCGGCTCCGTAAGAAAAACTAAAAT 60.618 40.000 10.24 0.00 42.09 1.82
4504 5690 6.019762 CGGCTCCGTAAGAAAAACTAAAATC 58.980 40.000 0.00 0.00 43.02 2.17
4505 5691 6.128363 CGGCTCCGTAAGAAAAACTAAAATCT 60.128 38.462 0.00 0.00 43.02 2.40
4506 5692 7.021790 GGCTCCGTAAGAAAAACTAAAATCTG 58.978 38.462 0.00 0.00 43.02 2.90
4507 5693 7.021790 GCTCCGTAAGAAAAACTAAAATCTGG 58.978 38.462 0.00 0.00 43.02 3.86
4508 5694 7.308408 GCTCCGTAAGAAAAACTAAAATCTGGT 60.308 37.037 0.00 0.00 43.02 4.00
4509 5695 7.867752 TCCGTAAGAAAAACTAAAATCTGGTG 58.132 34.615 0.00 0.00 43.02 4.17
4510 5696 7.499895 TCCGTAAGAAAAACTAAAATCTGGTGT 59.500 33.333 0.00 0.00 43.02 4.16
4511 5697 8.776470 CCGTAAGAAAAACTAAAATCTGGTGTA 58.224 33.333 0.00 0.00 43.02 2.90
4512 5698 9.590088 CGTAAGAAAAACTAAAATCTGGTGTAC 57.410 33.333 0.00 0.00 43.02 2.90
4515 5701 9.797556 AAGAAAAACTAAAATCTGGTGTACAAC 57.202 29.630 3.20 3.20 0.00 3.32
4516 5702 9.185680 AGAAAAACTAAAATCTGGTGTACAACT 57.814 29.630 13.07 0.00 0.00 3.16
4517 5703 9.447040 GAAAAACTAAAATCTGGTGTACAACTC 57.553 33.333 13.07 0.00 0.00 3.01
4518 5704 8.747538 AAAACTAAAATCTGGTGTACAACTCT 57.252 30.769 13.07 0.00 0.00 3.24
4519 5705 8.747538 AAACTAAAATCTGGTGTACAACTCTT 57.252 30.769 13.07 0.00 0.00 2.85
4520 5706 9.841295 AAACTAAAATCTGGTGTACAACTCTTA 57.159 29.630 13.07 2.24 0.00 2.10
4521 5707 9.490379 AACTAAAATCTGGTGTACAACTCTTAG 57.510 33.333 13.07 12.64 0.00 2.18
4522 5708 8.648693 ACTAAAATCTGGTGTACAACTCTTAGT 58.351 33.333 13.07 13.19 0.00 2.24
4523 5709 9.490379 CTAAAATCTGGTGTACAACTCTTAGTT 57.510 33.333 13.07 2.43 39.39 2.24
4524 5710 8.747538 AAAATCTGGTGTACAACTCTTAGTTT 57.252 30.769 13.07 4.07 36.03 2.66
4525 5711 8.747538 AAATCTGGTGTACAACTCTTAGTTTT 57.252 30.769 13.07 5.93 36.03 2.43
4526 5712 8.747538 AATCTGGTGTACAACTCTTAGTTTTT 57.252 30.769 13.07 0.00 36.03 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.998727 GCTCCGCTTTTGTTCGCTTG 60.999 55.000 0.00 0.00 0.00 4.01
66 67 1.460305 GCTAGGGCATGGAGGAGGA 60.460 63.158 0.00 0.00 38.54 3.71
67 68 2.876945 CGCTAGGGCATGGAGGAGG 61.877 68.421 0.00 0.00 38.60 4.30
68 69 2.739784 CGCTAGGGCATGGAGGAG 59.260 66.667 0.00 0.00 38.60 3.69
138 168 4.964241 GAGGGGGATCGGAGGGGG 62.964 77.778 0.00 0.00 0.00 5.40
139 169 4.964241 GGAGGGGGATCGGAGGGG 62.964 77.778 0.00 0.00 0.00 4.79
140 170 4.964241 GGGAGGGGGATCGGAGGG 62.964 77.778 0.00 0.00 0.00 4.30
141 171 4.964241 GGGGAGGGGGATCGGAGG 62.964 77.778 0.00 0.00 0.00 4.30
142 172 4.964241 GGGGGAGGGGGATCGGAG 62.964 77.778 0.00 0.00 0.00 4.63
144 174 4.964241 GAGGGGGAGGGGGATCGG 62.964 77.778 0.00 0.00 0.00 4.18
145 175 4.964241 GGAGGGGGAGGGGGATCG 62.964 77.778 0.00 0.00 0.00 3.69
146 176 4.601297 GGGAGGGGGAGGGGGATC 62.601 77.778 0.00 0.00 0.00 3.36
155 185 4.845307 GAAGGGGAGGGGAGGGGG 62.845 77.778 0.00 0.00 0.00 5.40
171 201 2.685743 TTTGATCGGAGGGGGCGA 60.686 61.111 0.00 0.00 0.00 5.54
186 216 1.512735 CTAGGCTAGGGAAGGGCTTT 58.487 55.000 13.92 0.00 39.13 3.51
187 217 1.057275 GCTAGGCTAGGGAAGGGCTT 61.057 60.000 22.40 0.00 39.13 4.35
188 218 1.460497 GCTAGGCTAGGGAAGGGCT 60.460 63.158 22.40 0.00 41.23 5.19
189 219 2.521451 GGCTAGGCTAGGGAAGGGC 61.521 68.421 22.40 7.35 0.00 5.19
190 220 2.210711 CGGCTAGGCTAGGGAAGGG 61.211 68.421 22.40 0.00 0.00 3.95
191 221 2.873525 GCGGCTAGGCTAGGGAAGG 61.874 68.421 22.40 0.00 0.00 3.46
192 222 2.737830 GCGGCTAGGCTAGGGAAG 59.262 66.667 22.40 0.00 0.00 3.46
193 223 3.224324 CGCGGCTAGGCTAGGGAA 61.224 66.667 22.40 0.00 0.00 3.97
254 292 4.886121 GATCGACGGGGCGGAACC 62.886 72.222 0.00 0.00 37.93 3.62
255 293 3.834799 AGATCGACGGGGCGGAAC 61.835 66.667 0.00 0.00 0.00 3.62
256 294 3.833645 CAGATCGACGGGGCGGAA 61.834 66.667 0.00 0.00 0.00 4.30
263 301 0.525668 CGAGAAACCCAGATCGACGG 60.526 60.000 0.00 0.00 37.35 4.79
264 302 0.525668 CCGAGAAACCCAGATCGACG 60.526 60.000 0.00 0.00 37.35 5.12
265 303 0.806492 GCCGAGAAACCCAGATCGAC 60.806 60.000 0.00 0.00 37.35 4.20
267 305 1.878522 CGCCGAGAAACCCAGATCG 60.879 63.158 0.00 0.00 35.02 3.69
268 306 0.108329 TTCGCCGAGAAACCCAGATC 60.108 55.000 0.00 0.00 35.61 2.75
271 309 2.380410 CGTTCGCCGAGAAACCCAG 61.380 63.158 0.00 0.00 41.10 4.45
272 310 2.356553 CGTTCGCCGAGAAACCCA 60.357 61.111 0.00 0.00 41.10 4.51
273 311 3.116531 CCGTTCGCCGAGAAACCC 61.117 66.667 0.00 0.00 41.10 4.11
274 312 3.785499 GCCGTTCGCCGAGAAACC 61.785 66.667 0.00 0.00 41.10 3.27
275 313 4.130281 CGCCGTTCGCCGAGAAAC 62.130 66.667 0.00 0.00 41.10 2.78
305 343 3.978723 CTCTGCACTCACTCGCGGG 62.979 68.421 3.27 3.27 35.14 6.13
313 351 0.337773 ATCCCTCTCCTCTGCACTCA 59.662 55.000 0.00 0.00 0.00 3.41
314 352 1.039856 GATCCCTCTCCTCTGCACTC 58.960 60.000 0.00 0.00 0.00 3.51
316 354 0.753479 TCGATCCCTCTCCTCTGCAC 60.753 60.000 0.00 0.00 0.00 4.57
317 355 0.033109 TTCGATCCCTCTCCTCTGCA 60.033 55.000 0.00 0.00 0.00 4.41
318 356 0.387565 GTTCGATCCCTCTCCTCTGC 59.612 60.000 0.00 0.00 0.00 4.26
319 357 1.036707 GGTTCGATCCCTCTCCTCTG 58.963 60.000 0.63 0.00 0.00 3.35
322 360 1.854280 ACTAGGTTCGATCCCTCTCCT 59.146 52.381 8.95 1.05 33.35 3.69
325 363 3.673543 AAGACTAGGTTCGATCCCTCT 57.326 47.619 8.95 4.37 33.35 3.69
327 365 3.564264 GGTAAGACTAGGTTCGATCCCT 58.436 50.000 8.95 8.96 36.04 4.20
328 366 2.627221 GGGTAAGACTAGGTTCGATCCC 59.373 54.545 8.95 1.08 0.00 3.85
330 368 3.564264 AGGGGTAAGACTAGGTTCGATC 58.436 50.000 0.00 0.00 0.00 3.69
331 369 3.684408 AGGGGTAAGACTAGGTTCGAT 57.316 47.619 0.00 0.00 0.00 3.59
332 370 4.591321 TTAGGGGTAAGACTAGGTTCGA 57.409 45.455 0.00 0.00 0.00 3.71
336 374 3.229293 GCGATTAGGGGTAAGACTAGGT 58.771 50.000 0.00 0.00 0.00 3.08
337 375 2.561858 GGCGATTAGGGGTAAGACTAGG 59.438 54.545 0.00 0.00 0.00 3.02
338 376 2.228343 CGGCGATTAGGGGTAAGACTAG 59.772 54.545 0.00 0.00 0.00 2.57
340 378 1.038280 CGGCGATTAGGGGTAAGACT 58.962 55.000 0.00 0.00 0.00 3.24
341 379 0.599466 GCGGCGATTAGGGGTAAGAC 60.599 60.000 12.98 0.00 0.00 3.01
342 380 0.757935 AGCGGCGATTAGGGGTAAGA 60.758 55.000 12.98 0.00 0.00 2.10
343 381 0.600255 CAGCGGCGATTAGGGGTAAG 60.600 60.000 12.98 0.00 0.00 2.34
344 382 1.332144 ACAGCGGCGATTAGGGGTAA 61.332 55.000 12.98 0.00 0.00 2.85
345 383 0.467844 TACAGCGGCGATTAGGGGTA 60.468 55.000 12.98 0.00 0.00 3.69
346 384 1.332144 TTACAGCGGCGATTAGGGGT 61.332 55.000 12.98 0.00 0.00 4.95
348 386 0.600255 CCTTACAGCGGCGATTAGGG 60.600 60.000 12.98 6.10 0.00 3.53
349 387 0.600255 CCCTTACAGCGGCGATTAGG 60.600 60.000 12.98 11.01 0.00 2.69
363 409 1.771646 GAGCAACCCAACCCCCTTA 59.228 57.895 0.00 0.00 0.00 2.69
364 410 2.526110 GAGCAACCCAACCCCCTT 59.474 61.111 0.00 0.00 0.00 3.95
365 411 3.590574 GGAGCAACCCAACCCCCT 61.591 66.667 0.00 0.00 0.00 4.79
379 425 1.424493 GAACCAGCAGAATCGCGGAG 61.424 60.000 6.13 0.00 36.85 4.63
381 427 2.802667 CGAACCAGCAGAATCGCGG 61.803 63.158 6.13 0.00 36.85 6.46
386 432 1.202879 TCAAACCCGAACCAGCAGAAT 60.203 47.619 0.00 0.00 0.00 2.40
388 434 0.534203 GTCAAACCCGAACCAGCAGA 60.534 55.000 0.00 0.00 0.00 4.26
390 436 1.527380 GGTCAAACCCGAACCAGCA 60.527 57.895 0.00 0.00 33.11 4.41
395 441 0.534203 TCTGCTGGTCAAACCCGAAC 60.534 55.000 0.00 0.00 37.50 3.95
427 488 1.941476 GCACGAGCAAACGTCTACCG 61.941 60.000 0.00 0.00 44.76 4.02
495 556 2.108514 CACAGATTCGCCGCATGGT 61.109 57.895 0.00 0.00 37.67 3.55
496 557 2.711311 CACAGATTCGCCGCATGG 59.289 61.111 0.00 0.00 38.77 3.66
497 558 2.023741 GCACAGATTCGCCGCATG 59.976 61.111 0.00 0.00 0.00 4.06
498 559 2.899345 TACGCACAGATTCGCCGCAT 62.899 55.000 0.00 0.00 0.00 4.73
520 581 1.690893 GCACTAGCAGATCCCATCAGA 59.309 52.381 0.00 0.00 41.58 3.27
536 597 0.613260 TAACAGAATCCAGCGGCACT 59.387 50.000 1.45 0.00 0.00 4.40
555 616 3.265791 CTTGACAGAAAGGCGCTCTTAT 58.734 45.455 7.64 0.00 34.78 1.73
570 631 0.395586 AACCACTGCCTTGCTTGACA 60.396 50.000 0.00 0.00 0.00 3.58
571 632 0.031178 CAACCACTGCCTTGCTTGAC 59.969 55.000 0.00 0.00 0.00 3.18
572 633 0.395586 ACAACCACTGCCTTGCTTGA 60.396 50.000 0.00 0.00 0.00 3.02
573 634 1.317613 TACAACCACTGCCTTGCTTG 58.682 50.000 0.00 0.00 0.00 4.01
577 638 2.687935 ACAAGTTACAACCACTGCCTTG 59.312 45.455 0.00 0.00 35.89 3.61
581 642 4.814771 ACTCTTACAAGTTACAACCACTGC 59.185 41.667 0.00 0.00 0.00 4.40
582 643 5.815740 ACACTCTTACAAGTTACAACCACTG 59.184 40.000 0.00 0.00 0.00 3.66
594 655 9.893305 CCCTAACAATTAAAACACTCTTACAAG 57.107 33.333 0.00 0.00 0.00 3.16
596 657 8.983702 ACCCTAACAATTAAAACACTCTTACA 57.016 30.769 0.00 0.00 0.00 2.41
599 660 9.197306 AGAAACCCTAACAATTAAAACACTCTT 57.803 29.630 0.00 0.00 0.00 2.85
600 661 8.762481 AGAAACCCTAACAATTAAAACACTCT 57.238 30.769 0.00 0.00 0.00 3.24
601 662 9.459640 GAAGAAACCCTAACAATTAAAACACTC 57.540 33.333 0.00 0.00 0.00 3.51
603 664 7.654520 GGGAAGAAACCCTAACAATTAAAACAC 59.345 37.037 0.00 0.00 45.90 3.32
624 685 1.197430 ACTCAGTGAGGGCTGGGAAG 61.197 60.000 23.79 0.00 39.24 3.46
627 688 1.333636 CCTACTCAGTGAGGGCTGGG 61.334 65.000 23.79 10.74 42.44 4.45
629 690 1.110442 CTCCTACTCAGTGAGGGCTG 58.890 60.000 23.79 9.54 37.81 4.85
655 716 3.558505 CACACAGCAAGCAGAATTACAC 58.441 45.455 0.00 0.00 0.00 2.90
673 734 0.745486 CATCATGGAAGGCTCGCACA 60.745 55.000 0.00 0.00 0.00 4.57
694 755 1.202758 TGGCACAAACAATCCGAGTCT 60.203 47.619 0.00 0.00 31.92 3.24
717 778 2.425668 ACATAATAAAGGCGCAACACCC 59.574 45.455 10.83 0.00 0.00 4.61
724 785 2.864343 AGTGACGACATAATAAAGGCGC 59.136 45.455 0.00 0.00 0.00 6.53
729 790 7.011016 CCAGTAATGCAGTGACGACATAATAAA 59.989 37.037 0.00 0.00 0.00 1.40
740 801 5.858581 GTGATTTTTCCAGTAATGCAGTGAC 59.141 40.000 0.00 0.00 0.00 3.67
741 802 5.048083 GGTGATTTTTCCAGTAATGCAGTGA 60.048 40.000 0.00 0.00 0.00 3.41
742 803 5.163513 GGTGATTTTTCCAGTAATGCAGTG 58.836 41.667 0.00 0.00 0.00 3.66
756 817 5.309282 TCCATAAAAGGCAAGGGTGATTTTT 59.691 36.000 0.00 0.00 31.49 1.94
762 823 3.364549 TCATCCATAAAAGGCAAGGGTG 58.635 45.455 0.00 0.00 0.00 4.61
789 850 8.594881 AGATAATTGACGTTTCCATCATCTAC 57.405 34.615 0.00 0.00 0.00 2.59
842 905 0.179108 GTGTACGGGATGTCTGGAGC 60.179 60.000 0.00 0.00 0.00 4.70
844 907 1.940883 GCGTGTACGGGATGTCTGGA 61.941 60.000 6.55 0.00 40.23 3.86
854 932 0.736636 TCATACTCCAGCGTGTACGG 59.263 55.000 6.55 0.00 40.23 4.02
855 933 2.776312 ATCATACTCCAGCGTGTACG 57.224 50.000 0.00 0.00 43.27 3.67
864 942 5.163343 GCTGGTGGTAGTTAATCATACTCCA 60.163 44.000 0.00 0.00 0.00 3.86
885 963 2.290260 TGTTAAGACCCATGGAGTGCTG 60.290 50.000 15.22 0.00 0.00 4.41
892 970 5.183228 ACGTAAATCTGTTAAGACCCATGG 58.817 41.667 4.14 4.14 34.48 3.66
894 972 6.938030 TGAAACGTAAATCTGTTAAGACCCAT 59.062 34.615 0.00 0.00 34.48 4.00
896 974 6.790285 TGAAACGTAAATCTGTTAAGACCC 57.210 37.500 0.00 0.00 34.48 4.46
903 981 6.734137 TGCAGAAATGAAACGTAAATCTGTT 58.266 32.000 12.28 0.00 36.18 3.16
907 985 5.699839 ACCTGCAGAAATGAAACGTAAATC 58.300 37.500 17.39 0.00 0.00 2.17
909 987 4.819630 AGACCTGCAGAAATGAAACGTAAA 59.180 37.500 17.39 0.00 0.00 2.01
950 1028 0.108615 AGGCTATGTCACAGCGTGTC 60.109 55.000 0.00 4.36 40.05 3.67
980 1061 2.156917 TGCTGAGCTCTTGATTTGGTG 58.843 47.619 16.19 0.00 0.00 4.17
986 1067 0.547075 AGCCATGCTGAGCTCTTGAT 59.453 50.000 16.19 0.63 37.57 2.57
1062 1143 1.803519 GTTCTCCTCGCACAGCTCG 60.804 63.158 0.00 0.00 0.00 5.03
1134 1215 3.591196 ATAAGCGCCAAAAGAATGCAA 57.409 38.095 2.29 0.00 0.00 4.08
1309 1390 8.196771 TCCCAGAATTGCATGATTACAATTAAC 58.803 33.333 0.00 0.00 44.36 2.01
1345 1426 3.951306 TGAACAACATTCAACGAGCAAG 58.049 40.909 0.00 0.00 0.00 4.01
1366 1447 2.743938 CAAGATGCGCGTAGTAGGAAT 58.256 47.619 8.43 0.00 0.00 3.01
1428 1520 8.195436 CCCTAGTTTCTACGACATGAGATAAAA 58.805 37.037 0.00 0.00 0.00 1.52
1429 1521 7.341256 ACCCTAGTTTCTACGACATGAGATAAA 59.659 37.037 0.00 0.00 0.00 1.40
1430 1522 6.832384 ACCCTAGTTTCTACGACATGAGATAA 59.168 38.462 0.00 0.00 0.00 1.75
1431 1523 6.363065 ACCCTAGTTTCTACGACATGAGATA 58.637 40.000 0.00 0.00 0.00 1.98
1432 1524 5.202004 ACCCTAGTTTCTACGACATGAGAT 58.798 41.667 0.00 0.00 0.00 2.75
1433 1525 4.597004 ACCCTAGTTTCTACGACATGAGA 58.403 43.478 0.00 0.00 0.00 3.27
1434 1526 4.985538 ACCCTAGTTTCTACGACATGAG 57.014 45.455 0.00 0.00 0.00 2.90
1435 1527 7.414222 AATTACCCTAGTTTCTACGACATGA 57.586 36.000 0.00 0.00 0.00 3.07
1436 1528 7.224167 GGAAATTACCCTAGTTTCTACGACATG 59.776 40.741 0.00 0.00 35.50 3.21
1437 1529 7.125356 AGGAAATTACCCTAGTTTCTACGACAT 59.875 37.037 0.00 0.00 35.50 3.06
1480 1572 8.093307 TGATGTTTTGAAGCAAAGCCATAATAA 58.907 29.630 0.00 0.00 34.49 1.40
1481 1573 7.609960 TGATGTTTTGAAGCAAAGCCATAATA 58.390 30.769 0.00 0.00 34.49 0.98
1482 1574 6.465948 TGATGTTTTGAAGCAAAGCCATAAT 58.534 32.000 0.00 0.00 34.49 1.28
1576 1669 1.478654 GGAAGCAAGAAACCACCTCCA 60.479 52.381 0.00 0.00 0.00 3.86
1577 1670 1.248486 GGAAGCAAGAAACCACCTCC 58.752 55.000 0.00 0.00 0.00 4.30
1596 1689 3.282021 AGATGATGAAAATGGTCACGGG 58.718 45.455 0.00 0.00 0.00 5.28
1613 1706 6.453092 AGACAGAAAATCAGCCAAAAAGATG 58.547 36.000 0.00 0.00 0.00 2.90
1652 1745 4.317671 AGTCGCCAATACCACATACTAC 57.682 45.455 0.00 0.00 0.00 2.73
1726 1830 4.204012 AGTGTCTGAGAGATAGTGCCTAC 58.796 47.826 0.00 0.00 0.00 3.18
1731 1835 4.527944 TGGGTAGTGTCTGAGAGATAGTG 58.472 47.826 0.00 0.00 0.00 2.74
1826 1930 8.154856 TGGTAGTAAATATAGGTTCATCAAGGC 58.845 37.037 0.00 0.00 0.00 4.35
1849 1954 6.349243 TCTTCTGCAAATGATTCAAATGGT 57.651 33.333 0.00 0.00 0.00 3.55
1917 2022 3.941483 ACAATAGCAGGGCGCAATATATC 59.059 43.478 10.83 0.00 46.13 1.63
1984 2089 3.243359 TCTTTGAATTTCCCCAGCAGT 57.757 42.857 0.00 0.00 0.00 4.40
1991 2096 6.866010 AAAATGCACTTCTTTGAATTTCCC 57.134 33.333 0.00 0.00 0.00 3.97
2028 2133 5.221106 GCAATAGTCAGCTATTTCCATGCAA 60.221 40.000 0.00 0.00 43.31 4.08
2029 2134 4.276678 GCAATAGTCAGCTATTTCCATGCA 59.723 41.667 0.00 0.00 43.31 3.96
2030 2135 4.518211 AGCAATAGTCAGCTATTTCCATGC 59.482 41.667 0.00 0.00 43.31 4.06
2031 2136 6.630444 AAGCAATAGTCAGCTATTTCCATG 57.370 37.500 0.00 0.00 43.31 3.66
2032 2137 7.282585 TGTAAGCAATAGTCAGCTATTTCCAT 58.717 34.615 0.00 0.00 43.31 3.41
2033 2138 6.649155 TGTAAGCAATAGTCAGCTATTTCCA 58.351 36.000 0.00 0.00 43.31 3.53
2034 2139 7.065803 TGTTGTAAGCAATAGTCAGCTATTTCC 59.934 37.037 0.00 0.00 43.31 3.13
2035 2140 7.974675 TGTTGTAAGCAATAGTCAGCTATTTC 58.025 34.615 0.00 0.00 43.31 2.17
2036 2141 7.921786 TGTTGTAAGCAATAGTCAGCTATTT 57.078 32.000 0.00 0.00 43.31 1.40
2037 2142 7.545362 CTGTTGTAAGCAATAGTCAGCTATT 57.455 36.000 0.00 0.00 45.84 1.73
2180 2286 6.566197 ACTTCTCAGAGTAAGGCAATTTTG 57.434 37.500 11.87 0.00 0.00 2.44
2222 2328 5.924475 AGACGATCCTGTTTTGTTTGTAG 57.076 39.130 0.00 0.00 0.00 2.74
2262 2368 7.908827 TTTATTAATGCGACCTTCTGTACAA 57.091 32.000 0.00 0.00 0.00 2.41
2263 2369 8.500753 AATTTATTAATGCGACCTTCTGTACA 57.499 30.769 0.00 0.00 0.00 2.90
2294 2400 7.611770 TCGATGGAGAAAAGAATCTAAAGTGA 58.388 34.615 0.00 0.00 0.00 3.41
2298 2404 7.841956 AGACTCGATGGAGAAAAGAATCTAAA 58.158 34.615 12.14 0.00 43.27 1.85
2306 2412 3.594134 AGCAAGACTCGATGGAGAAAAG 58.406 45.455 12.14 0.35 43.27 2.27
2415 2521 8.450180 ACGATGCCCAATTTTTAATTCAAAATC 58.550 29.630 10.06 0.75 35.67 2.17
2416 2522 8.334263 ACGATGCCCAATTTTTAATTCAAAAT 57.666 26.923 4.80 4.80 37.86 1.82
2439 2545 1.014352 GCCAGGGCATAAGTACAACG 58.986 55.000 5.20 0.00 41.49 4.10
2473 2579 1.443194 GCAATGAACAGCTGCACCG 60.443 57.895 15.27 0.73 36.09 4.94
2534 2640 5.240844 AGCGCCTGTAACTACTGAAATTTTT 59.759 36.000 2.29 0.00 0.00 1.94
2570 2676 0.178990 ACCAAAGGACCAACAGGAGC 60.179 55.000 0.00 0.00 0.00 4.70
2604 2743 5.416947 TGCTTTATTCGGGAGACTTCTAAC 58.583 41.667 0.00 0.00 39.59 2.34
2630 2769 2.036217 ACATGACCACCAAAACATGCAG 59.964 45.455 0.00 0.00 42.28 4.41
2634 2773 3.306225 GCATCACATGACCACCAAAACAT 60.306 43.478 0.00 0.00 0.00 2.71
2650 2790 6.051717 AGTGGTAACTAATGATGAGCATCAC 58.948 40.000 14.78 1.62 41.61 3.06
2657 3111 6.901300 AGGAGGTAAGTGGTAACTAATGATGA 59.099 38.462 0.00 0.00 34.77 2.92
2754 3210 5.760253 CACTCTACACAGGACTTGAAACAAT 59.240 40.000 0.00 0.00 0.00 2.71
2833 3289 7.609918 TGCACAGCCTTTACTCAAATAGATTAA 59.390 33.333 0.00 0.00 0.00 1.40
2834 3290 7.109501 TGCACAGCCTTTACTCAAATAGATTA 58.890 34.615 0.00 0.00 0.00 1.75
2835 3291 5.945784 TGCACAGCCTTTACTCAAATAGATT 59.054 36.000 0.00 0.00 0.00 2.40
2836 3292 5.500234 TGCACAGCCTTTACTCAAATAGAT 58.500 37.500 0.00 0.00 0.00 1.98
2838 3294 5.824904 ATGCACAGCCTTTACTCAAATAG 57.175 39.130 0.00 0.00 0.00 1.73
2839 3295 6.208402 TCAAATGCACAGCCTTTACTCAAATA 59.792 34.615 0.00 0.00 0.00 1.40
2840 3296 5.010922 TCAAATGCACAGCCTTTACTCAAAT 59.989 36.000 0.00 0.00 0.00 2.32
2841 3297 4.340666 TCAAATGCACAGCCTTTACTCAAA 59.659 37.500 0.00 0.00 0.00 2.69
2894 3351 2.216898 GCTGAAACTGAGAAGCACACT 58.783 47.619 0.00 0.00 35.69 3.55
3120 3591 1.939934 GCAAATGCAGCACCGTATAGA 59.060 47.619 0.00 0.00 41.59 1.98
3405 3876 6.697019 ACATCAAGAATGTGTTTGCAAAGTAC 59.303 34.615 13.26 14.93 47.00 2.73
3486 3957 6.748333 TTCTGAATCTTGACATAAGGCAAG 57.252 37.500 7.24 7.24 42.10 4.01
3563 4039 4.336713 GCCTGGTGGACATTAGATTTCTTC 59.663 45.833 0.00 0.00 34.57 2.87
3564 4040 4.018050 AGCCTGGTGGACATTAGATTTCTT 60.018 41.667 0.00 0.00 34.57 2.52
3565 4041 3.525199 AGCCTGGTGGACATTAGATTTCT 59.475 43.478 0.00 0.00 34.57 2.52
3597 4073 1.864565 AAAAATGCCACCGCTTGTTC 58.135 45.000 0.00 0.00 35.36 3.18
3723 4200 5.003804 TCCAAGCTAATCTCTGGTTGAAAC 58.996 41.667 6.50 0.00 42.22 2.78
3742 4219 4.931661 AAGTAAGAGACGAACACTCCAA 57.068 40.909 0.00 0.00 35.27 3.53
3766 4243 3.047796 CAAACACAAACTGCTGCAGATC 58.952 45.455 34.28 0.12 35.18 2.75
3821 4299 4.335416 TCAACCCCATCTCAAGTCAAATC 58.665 43.478 0.00 0.00 0.00 2.17
3833 4311 9.797556 GTTAAACTAATACAATTCAACCCCATC 57.202 33.333 0.00 0.00 0.00 3.51
3885 4368 7.972832 AAGAATCAACTATTACCACGAACAA 57.027 32.000 0.00 0.00 0.00 2.83
3925 4408 7.386851 CCTTCAGGAACTAGTTCACAAATAGA 58.613 38.462 31.30 16.80 41.20 1.98
3942 4425 1.656587 ATACACACCAGCCTTCAGGA 58.343 50.000 0.00 0.00 37.39 3.86
3947 4430 3.412237 AACGTAATACACACCAGCCTT 57.588 42.857 0.00 0.00 0.00 4.35
3976 4459 0.178995 TCCACAATCAGCAGGTGCAA 60.179 50.000 4.48 0.00 45.16 4.08
4026 4509 8.370182 AGCAAGTTCAATGAACAATTAGGAAAT 58.630 29.630 25.63 0.51 44.11 2.17
4070 4553 1.236616 TTCAGCACCTTGATGGCGTG 61.237 55.000 0.00 0.00 40.22 5.34
4071 4554 0.537143 TTTCAGCACCTTGATGGCGT 60.537 50.000 0.00 0.00 40.22 5.68
4129 4612 3.922171 AAACCAGGCAAAAACCAATGA 57.078 38.095 0.00 0.00 0.00 2.57
4140 4623 6.239176 CCAGTTAACTTATGAAAAACCAGGCA 60.239 38.462 5.07 0.00 0.00 4.75
4144 4627 8.763984 TTACCCAGTTAACTTATGAAAAACCA 57.236 30.769 5.07 0.00 0.00 3.67
4175 4658 8.731275 TTGCCTCATCGATTAATTAAGAAGAA 57.269 30.769 3.94 0.00 0.00 2.52
4224 4712 7.933577 GGGTGATGACAGATGACAAGATTATTA 59.066 37.037 0.00 0.00 0.00 0.98
4225 4713 6.769822 GGGTGATGACAGATGACAAGATTATT 59.230 38.462 0.00 0.00 0.00 1.40
4227 4715 5.426509 AGGGTGATGACAGATGACAAGATTA 59.573 40.000 0.00 0.00 0.00 1.75
4231 4719 3.623906 AGGGTGATGACAGATGACAAG 57.376 47.619 0.00 0.00 0.00 3.16
4232 4720 5.070446 GGTATAGGGTGATGACAGATGACAA 59.930 44.000 0.00 0.00 0.00 3.18
4235 4723 4.814967 TGGTATAGGGTGATGACAGATGA 58.185 43.478 0.00 0.00 0.00 2.92
4236 4724 5.485620 CATGGTATAGGGTGATGACAGATG 58.514 45.833 0.00 0.00 0.00 2.90
4237 4725 4.019860 GCATGGTATAGGGTGATGACAGAT 60.020 45.833 0.00 0.00 0.00 2.90
4238 4726 3.324846 GCATGGTATAGGGTGATGACAGA 59.675 47.826 0.00 0.00 0.00 3.41
4239 4727 3.326006 AGCATGGTATAGGGTGATGACAG 59.674 47.826 0.00 0.00 0.00 3.51
4278 4768 3.965470 TCCTAGACCAGTACAGGCATA 57.035 47.619 3.83 0.00 0.00 3.14
4364 4855 2.416836 CGATTTCCACTCCTAGTCGCAA 60.417 50.000 0.00 0.00 0.00 4.85
4368 4859 3.192844 TGTGTCGATTTCCACTCCTAGTC 59.807 47.826 5.61 0.00 32.76 2.59
4369 4860 3.162666 TGTGTCGATTTCCACTCCTAGT 58.837 45.455 5.61 0.00 32.76 2.57
4370 4861 3.868757 TGTGTCGATTTCCACTCCTAG 57.131 47.619 5.61 0.00 32.76 3.02
4371 4862 4.819105 AATGTGTCGATTTCCACTCCTA 57.181 40.909 5.61 0.00 32.76 2.94
4391 5577 5.305585 CAGTCCCAAACAAGCTCTAAGTAA 58.694 41.667 0.00 0.00 0.00 2.24
4399 5585 0.475906 AGAGCAGTCCCAAACAAGCT 59.524 50.000 0.00 0.00 42.14 3.74
4400 5586 0.595095 CAGAGCAGTCCCAAACAAGC 59.405 55.000 0.00 0.00 0.00 4.01
4401 5587 0.595095 GCAGAGCAGTCCCAAACAAG 59.405 55.000 0.00 0.00 0.00 3.16
4402 5588 0.183492 AGCAGAGCAGTCCCAAACAA 59.817 50.000 0.00 0.00 0.00 2.83
4403 5589 0.183492 AAGCAGAGCAGTCCCAAACA 59.817 50.000 0.00 0.00 0.00 2.83
4404 5590 0.877743 GAAGCAGAGCAGTCCCAAAC 59.122 55.000 0.00 0.00 0.00 2.93
4405 5591 0.767375 AGAAGCAGAGCAGTCCCAAA 59.233 50.000 0.00 0.00 0.00 3.28
4406 5592 0.767375 AAGAAGCAGAGCAGTCCCAA 59.233 50.000 0.00 0.00 0.00 4.12
4407 5593 1.644509 TAAGAAGCAGAGCAGTCCCA 58.355 50.000 0.00 0.00 0.00 4.37
4408 5594 2.770164 TTAAGAAGCAGAGCAGTCCC 57.230 50.000 0.00 0.00 0.00 4.46
4409 5595 5.635417 AATTTTAAGAAGCAGAGCAGTCC 57.365 39.130 0.00 0.00 0.00 3.85
4410 5596 8.293157 AGTTAAATTTTAAGAAGCAGAGCAGTC 58.707 33.333 0.00 0.00 0.00 3.51
4411 5597 8.171164 AGTTAAATTTTAAGAAGCAGAGCAGT 57.829 30.769 0.00 0.00 0.00 4.40
4412 5598 7.752686 GGAGTTAAATTTTAAGAAGCAGAGCAG 59.247 37.037 0.00 0.00 0.00 4.24
4413 5599 7.573096 CGGAGTTAAATTTTAAGAAGCAGAGCA 60.573 37.037 0.00 0.00 0.00 4.26
4414 5600 6.743172 CGGAGTTAAATTTTAAGAAGCAGAGC 59.257 38.462 0.00 0.00 0.00 4.09
4415 5601 6.743172 GCGGAGTTAAATTTTAAGAAGCAGAG 59.257 38.462 0.00 0.00 0.00 3.35
4416 5602 6.430000 AGCGGAGTTAAATTTTAAGAAGCAGA 59.570 34.615 0.00 0.00 0.00 4.26
4417 5603 6.612306 AGCGGAGTTAAATTTTAAGAAGCAG 58.388 36.000 0.00 0.00 0.00 4.24
4418 5604 6.569179 AGCGGAGTTAAATTTTAAGAAGCA 57.431 33.333 0.00 0.00 0.00 3.91
4419 5605 7.081976 TGAAGCGGAGTTAAATTTTAAGAAGC 58.918 34.615 0.00 6.26 0.00 3.86
4420 5606 9.458374 TTTGAAGCGGAGTTAAATTTTAAGAAG 57.542 29.630 0.00 0.00 0.00 2.85
4421 5607 9.804758 TTTTGAAGCGGAGTTAAATTTTAAGAA 57.195 25.926 0.00 0.00 0.00 2.52
4422 5608 9.458374 CTTTTGAAGCGGAGTTAAATTTTAAGA 57.542 29.630 0.00 0.00 0.00 2.10
4423 5609 9.458374 TCTTTTGAAGCGGAGTTAAATTTTAAG 57.542 29.630 0.00 0.00 0.00 1.85
4424 5610 9.974980 ATCTTTTGAAGCGGAGTTAAATTTTAA 57.025 25.926 0.00 0.00 0.00 1.52
4425 5611 9.974980 AATCTTTTGAAGCGGAGTTAAATTTTA 57.025 25.926 0.00 0.00 0.00 1.52
4426 5612 8.887036 AATCTTTTGAAGCGGAGTTAAATTTT 57.113 26.923 0.00 0.00 0.00 1.82
4427 5613 9.974980 TTAATCTTTTGAAGCGGAGTTAAATTT 57.025 25.926 0.00 0.00 0.00 1.82
4428 5614 9.974980 TTTAATCTTTTGAAGCGGAGTTAAATT 57.025 25.926 0.00 0.00 0.00 1.82
4429 5615 9.626045 CTTTAATCTTTTGAAGCGGAGTTAAAT 57.374 29.630 0.00 0.00 0.00 1.40
4430 5616 7.593644 GCTTTAATCTTTTGAAGCGGAGTTAAA 59.406 33.333 0.39 0.00 42.35 1.52
4431 5617 7.081976 GCTTTAATCTTTTGAAGCGGAGTTAA 58.918 34.615 0.39 0.00 42.35 2.01
4432 5618 6.608610 GCTTTAATCTTTTGAAGCGGAGTTA 58.391 36.000 0.39 0.00 42.35 2.24
4433 5619 5.461526 GCTTTAATCTTTTGAAGCGGAGTT 58.538 37.500 0.39 0.00 42.35 3.01
4434 5620 5.048153 GCTTTAATCTTTTGAAGCGGAGT 57.952 39.130 0.39 0.00 42.35 3.85
4440 5626 6.212955 TCCGTTTGGCTTTAATCTTTTGAAG 58.787 36.000 0.00 0.00 32.94 3.02
4441 5627 6.150396 TCCGTTTGGCTTTAATCTTTTGAA 57.850 33.333 0.00 0.00 34.14 2.69
4442 5628 5.776173 TCCGTTTGGCTTTAATCTTTTGA 57.224 34.783 0.00 0.00 34.14 2.69
4443 5629 6.253512 GCTATCCGTTTGGCTTTAATCTTTTG 59.746 38.462 0.00 0.00 34.14 2.44
4444 5630 6.152831 AGCTATCCGTTTGGCTTTAATCTTTT 59.847 34.615 0.00 0.00 34.14 2.27
4445 5631 5.652452 AGCTATCCGTTTGGCTTTAATCTTT 59.348 36.000 0.00 0.00 34.14 2.52
4446 5632 5.066505 CAGCTATCCGTTTGGCTTTAATCTT 59.933 40.000 0.00 0.00 32.30 2.40
4447 5633 4.576463 CAGCTATCCGTTTGGCTTTAATCT 59.424 41.667 0.00 0.00 32.30 2.40
4448 5634 4.789802 GCAGCTATCCGTTTGGCTTTAATC 60.790 45.833 0.00 0.00 32.30 1.75
4449 5635 3.066760 GCAGCTATCCGTTTGGCTTTAAT 59.933 43.478 0.00 0.00 32.30 1.40
4450 5636 2.422127 GCAGCTATCCGTTTGGCTTTAA 59.578 45.455 0.00 0.00 32.30 1.52
4451 5637 2.014128 GCAGCTATCCGTTTGGCTTTA 58.986 47.619 0.00 0.00 32.30 1.85
4452 5638 0.811281 GCAGCTATCCGTTTGGCTTT 59.189 50.000 0.00 0.00 32.30 3.51
4453 5639 0.322456 TGCAGCTATCCGTTTGGCTT 60.322 50.000 0.00 0.00 32.30 4.35
4454 5640 0.107017 ATGCAGCTATCCGTTTGGCT 60.107 50.000 0.00 0.00 35.23 4.75
4455 5641 0.029834 CATGCAGCTATCCGTTTGGC 59.970 55.000 0.00 0.00 34.14 4.52
4456 5642 1.667236 TCATGCAGCTATCCGTTTGG 58.333 50.000 0.00 0.00 0.00 3.28
4457 5643 4.966249 CATATCATGCAGCTATCCGTTTG 58.034 43.478 0.00 0.00 0.00 2.93
4471 5657 1.995484 CTTACGGAGCCGCATATCATG 59.005 52.381 9.14 0.00 44.19 3.07
4472 5658 1.893137 TCTTACGGAGCCGCATATCAT 59.107 47.619 9.14 0.00 44.19 2.45
4473 5659 1.324383 TCTTACGGAGCCGCATATCA 58.676 50.000 9.14 0.00 44.19 2.15
4474 5660 2.433868 TTCTTACGGAGCCGCATATC 57.566 50.000 9.14 0.00 44.19 1.63
4475 5661 2.902705 TTTCTTACGGAGCCGCATAT 57.097 45.000 9.14 0.00 44.19 1.78
4476 5662 2.674357 GTTTTTCTTACGGAGCCGCATA 59.326 45.455 9.14 0.00 44.19 3.14
4477 5663 1.467342 GTTTTTCTTACGGAGCCGCAT 59.533 47.619 9.14 0.00 44.19 4.73
4478 5664 0.869730 GTTTTTCTTACGGAGCCGCA 59.130 50.000 9.14 0.00 44.19 5.69
4479 5665 1.154197 AGTTTTTCTTACGGAGCCGC 58.846 50.000 9.14 0.00 44.19 6.53
4480 5666 4.996062 TTTAGTTTTTCTTACGGAGCCG 57.004 40.909 7.48 7.48 46.03 5.52
4481 5667 7.021790 CAGATTTTAGTTTTTCTTACGGAGCC 58.978 38.462 0.00 0.00 0.00 4.70
4482 5668 7.021790 CCAGATTTTAGTTTTTCTTACGGAGC 58.978 38.462 0.00 0.00 0.00 4.70
4483 5669 8.015658 CACCAGATTTTAGTTTTTCTTACGGAG 58.984 37.037 0.00 0.00 0.00 4.63
4484 5670 7.499895 ACACCAGATTTTAGTTTTTCTTACGGA 59.500 33.333 0.00 0.00 0.00 4.69
4485 5671 7.645402 ACACCAGATTTTAGTTTTTCTTACGG 58.355 34.615 0.00 0.00 0.00 4.02
4486 5672 9.590088 GTACACCAGATTTTAGTTTTTCTTACG 57.410 33.333 0.00 0.00 0.00 3.18
4489 5675 9.797556 GTTGTACACCAGATTTTAGTTTTTCTT 57.202 29.630 0.00 0.00 0.00 2.52
4490 5676 9.185680 AGTTGTACACCAGATTTTAGTTTTTCT 57.814 29.630 0.00 0.00 0.00 2.52
4491 5677 9.447040 GAGTTGTACACCAGATTTTAGTTTTTC 57.553 33.333 0.00 0.00 0.00 2.29
4492 5678 9.185680 AGAGTTGTACACCAGATTTTAGTTTTT 57.814 29.630 0.00 0.00 0.00 1.94
4493 5679 8.747538 AGAGTTGTACACCAGATTTTAGTTTT 57.252 30.769 0.00 0.00 0.00 2.43
4494 5680 8.747538 AAGAGTTGTACACCAGATTTTAGTTT 57.252 30.769 0.00 0.00 0.00 2.66
4495 5681 9.490379 CTAAGAGTTGTACACCAGATTTTAGTT 57.510 33.333 0.00 0.00 0.00 2.24
4496 5682 8.648693 ACTAAGAGTTGTACACCAGATTTTAGT 58.351 33.333 0.00 1.83 0.00 2.24
4497 5683 9.490379 AACTAAGAGTTGTACACCAGATTTTAG 57.510 33.333 0.00 1.24 37.00 1.85
4498 5684 9.841295 AAACTAAGAGTTGTACACCAGATTTTA 57.159 29.630 0.00 0.00 38.66 1.52
4499 5685 8.747538 AAACTAAGAGTTGTACACCAGATTTT 57.252 30.769 0.00 0.00 38.66 1.82
4500 5686 8.747538 AAAACTAAGAGTTGTACACCAGATTT 57.252 30.769 0.00 0.00 38.66 2.17
4501 5687 8.747538 AAAAACTAAGAGTTGTACACCAGATT 57.252 30.769 0.00 0.00 38.66 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.