AutoCloner

Multiple sequence alignment - TraesCS4B01G036600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4B01G036600	chr4B	100.000	3059	0	0	1	3059	26337740	26334682	0.000000e+00	5650.0
1	TraesCS4B01G036600	chr4D	95.115	2088	39	22	645	2708	6463037	6460989	0.000000e+00	3232.0
2	TraesCS4B01G036600	chr4D	96.620	355	10	2	2707	3059	6460910	6460556	3.400000e-164	588.0
3	TraesCS4B01G036600	chr4D	93.011	186	11	2	1	184	6463741	6463556	1.400000e-68	270.0
4	TraesCS4B01G036600	chr7A	90.731	1888	96	24	860	2708	663604930	663603083	0.000000e+00	2444.0
5	TraesCS4B01G036600	chr7A	94.928	276	10	4	2707	2980	663603050	663602777	2.180000e-116	429.0
6	TraesCS4B01G036600	chr7A	90.698	86	2	2	702	787	663605037	663604958	3.220000e-20	110.0
7	TraesCS4B01G036600	chr7D	92.125	1473	80	22	775	2234	574291031	574289582	0.000000e+00	2045.0
8	TraesCS4B01G036600	chr7D	95.266	338	12	4	2707	3043	574288969	574288635	1.610000e-147	532.0
9	TraesCS4B01G036600	chr7D	86.100	482	32	14	2232	2708	574289501	574289050	1.280000e-133	486.0
10	TraesCS4B01G036600	chr7D	91.351	185	15	1	1	184	307047456	307047272	5.060000e-63	252.0
11	TraesCS4B01G036600	chr7D	93.151	73	2	1	702	774	574291130	574291061	1.500000e-18	104.0
12	TraesCS4B01G036600	chr7D	81.553	103	5	7	1009	1098	574284970	574285071	4.230000e-09	73.1
13	TraesCS4B01G036600	chrUn	90.550	1545	81	25	702	2201	289618732	289620256	0.000000e+00	1984.0
14	TraesCS4B01G036600	chrUn	90.550	1545	81	24	702	2201	299516546	299515022	0.000000e+00	1984.0
15	TraesCS4B01G036600	chrUn	94.271	192	9	2	2799	2990	86971736	86971547	2.980000e-75	292.0
16	TraesCS4B01G036600	chrUn	91.892	185	14	1	1	184	216512973	216512789	1.090000e-64	257.0
17	TraesCS4B01G036600	chrUn	91.892	185	14	1	1	184	286270410	286270594	1.090000e-64	257.0
18	TraesCS4B01G036600	chrUn	90.291	103	7	3	2127	2227	289620250	289620351	6.880000e-27	132.0
19	TraesCS4B01G036600	chrUn	91.000	100	6	3	2130	2227	299515025	299514927	6.880000e-27	132.0
20	TraesCS4B01G036600	chrUn	100.000	40	0	0	2758	2797	277181509	277181470	1.180000e-09	75.0
21	TraesCS4B01G036600	chrUn	100.000	40	0	0	2758	2797	337642410	337642371	1.180000e-09	75.0
22	TraesCS4B01G036600	chr7B	90.550	1545	81	24	702	2201	632966834	632965310	0.000000e+00	1984.0
23	TraesCS4B01G036600	chr7B	93.820	356	17	5	2707	3059	632711909	632712262	5.810000e-147	531.0
24	TraesCS4B01G036600	chr7B	93.539	356	18	5	2707	3059	632957381	632957028	2.700000e-145	525.0
25	TraesCS4B01G036600	chr7B	91.176	204	12	3	2510	2708	632711628	632711830	3.890000e-69	272.0
26	TraesCS4B01G036600	chr7B	90.547	201	13	3	2513	2708	632957659	632957460	8.410000e-66	261.0
27	TraesCS4B01G036600	chr7B	81.545	233	16	8	2232	2464	632711423	632711628	1.890000e-37	167.0
28	TraesCS4B01G036600	chr7B	80.687	233	16	9	2232	2464	632957865	632957662	1.470000e-33	154.0
29	TraesCS4B01G036600	chr7B	91.000	100	6	3	2130	2227	632965313	632965215	6.880000e-27	132.0
30	TraesCS4B01G036600	chr7B	100.000	40	0	0	2758	2797	632740402	632740441	1.180000e-09	75.0
31	TraesCS4B01G036600	chr3A	89.333	450	38	7	180	623	672904106	672903661	9.580000e-155	556.0
32	TraesCS4B01G036600	chr3A	89.111	450	39	8	180	623	164857427	164857872	4.460000e-153	551.0
33	TraesCS4B01G036600	chr3A	91.892	185	14	1	1	184	164856635	164856819	1.090000e-64	257.0
34	TraesCS4B01G036600	chr6D	89.111	450	39	8	180	623	458921221	458921666	4.460000e-153	551.0
35	TraesCS4B01G036600	chr5D	89.111	450	39	8	180	623	503224125	503224570	4.460000e-153	551.0
36	TraesCS4B01G036600	chr5D	89.111	450	39	8	180	623	503272420	503271975	4.460000e-153	551.0
37	TraesCS4B01G036600	chr3D	89.111	450	39	8	180	623	24166897	24166452	4.460000e-153	551.0
38	TraesCS4B01G036600	chr3D	89.135	451	37	9	180	623	501831241	501831686	4.460000e-153	551.0
39	TraesCS4B01G036600	chr1D	89.111	450	39	8	180	623	254391388	254390943	4.460000e-153	551.0
40	TraesCS4B01G036600	chr1D	91.892	185	14	1	1	184	254389456	254389272	1.090000e-64	257.0
41	TraesCS4B01G036600	chr1D	91.892	185	14	1	1	184	254392475	254392291	1.090000e-64	257.0
42	TraesCS4B01G036600	chr1A	89.111	450	39	8	180	623	278528333	278527888	4.460000e-153	551.0
43	TraesCS4B01G036600	chr2B	76.838	816	152	22	1260	2058	744856908	744856113	2.820000e-115	425.0
44	TraesCS4B01G036600	chr6B	91.351	185	15	1	1	184	625615331	625615515	5.060000e-63	252.0
45	TraesCS4B01G036600	chr4A	91.351	185	15	1	1	184	310790839	310790655	5.060000e-63	252.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4B01G036600	chr4B	26334682	26337740	3058	True	5650.000000	5650	100.000000	1	3059	1	chr4B.!!$R1	3058
1	TraesCS4B01G036600	chr4D	6460556	6463741	3185	True	1363.333333	3232	94.915333	1	3059	3	chr4D.!!$R1	3058
2	TraesCS4B01G036600	chr7A	663602777	663605037	2260	True	994.333333	2444	92.119000	702	2980	3	chr7A.!!$R1	2278
3	TraesCS4B01G036600	chr7D	574288635	574291130	2495	True	791.750000	2045	91.660500	702	3043	4	chr7D.!!$R2	2341
4	TraesCS4B01G036600	chrUn	289618732	289620351	1619	False	1058.000000	1984	90.420500	702	2227	2	chrUn.!!$F2	1525
5	TraesCS4B01G036600	chrUn	299514927	299516546	1619	True	1058.000000	1984	90.775000	702	2227	2	chrUn.!!$R5	1525
6	TraesCS4B01G036600	chr7B	632965215	632966834	1619	True	1058.000000	1984	90.775000	702	2227	2	chr7B.!!$R2	1525
7	TraesCS4B01G036600	chr7B	632711423	632712262	839	False	323.333333	531	88.847000	2232	3059	3	chr7B.!!$F2	827
8	TraesCS4B01G036600	chr7B	632957028	632957865	837	True	313.333333	525	88.257667	2232	3059	3	chr7B.!!$R1	827
9	TraesCS4B01G036600	chr3A	164856635	164857872	1237	False	404.000000	551	90.501500	1	623	2	chr3A.!!$F1	622
10	TraesCS4B01G036600	chr1D	254389272	254392475	3203	True	355.000000	551	90.965000	1	623	3	chr1D.!!$R1	622
11	TraesCS4B01G036600	chr2B	744856113	744856908	795	True	425.000000	425	76.838000	1260	2058	1	chr2B.!!$R1	798

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
40	41	1.401018	GGGAATTTGTCAAGCGAACCG	60.401	52.381	0.0	0.0	0.00	4.44	F
618	1026	1.859302	AGGCAAAAAGTTGGGACACA	58.141	45.000	0.0	0.0	39.29	3.72	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1654	2980	1.685820	GGCCAGCCTTACTCCACTT	59.314	57.895	0.00	0.00	0.0	3.16	R
2259	3769	0.671251	GTCTCTCTAGGTCGCATGGG	59.329	60.000	2.76	2.76	0.0	4.00	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
31	32	8.742125	ATAGATATAGAGGTGGGAATTTGTCA	57.258	34.615	0.00	0.00	0.00	3.58
40	41	1.401018	GGGAATTTGTCAAGCGAACCG	60.401	52.381	0.00	0.00	0.00	4.44
84	380	5.174037	AGTCCATTGACGAAAAGGGATTA	57.826	39.130	10.48	0.00	46.51	1.75
126	422	7.559335	AGTCCTACAATGATGGATATAAGCA	57.441	36.000	2.95	0.00	32.03	3.91
156	454	6.893005	TGAAATTCCGGGGAGTTATACATTTT	59.107	34.615	0.00	0.00	0.00	1.82
213	614	7.385894	AGCCTCATTAGACCATAGATCTTTT	57.614	36.000	0.00	0.00	0.00	2.27
485	892	8.596781	AAAGCTAGTTATAGGTTCTTCTCTCA	57.403	34.615	0.00	0.00	46.44	3.27
498	905	5.152623	TCTTCTCTCAATCGGAACAACAT	57.847	39.130	0.00	0.00	0.00	2.71
501	908	3.007940	TCTCTCAATCGGAACAACATGGT	59.992	43.478	0.00	0.00	0.00	3.55
503	910	3.073678	CTCAATCGGAACAACATGGTCA	58.926	45.455	0.00	0.00	35.30	4.02
551	959	9.475620	TTGAAGAGATGACATAGAACTAAGGTA	57.524	33.333	0.00	0.00	0.00	3.08
552	960	9.647918	TGAAGAGATGACATAGAACTAAGGTAT	57.352	33.333	0.00	0.00	0.00	2.73
594	1002	5.653769	GGTTGAATCAATCATCTCTGGGAAA	59.346	40.000	0.65	0.00	38.03	3.13
608	1016	6.758254	TCTCTGGGAAAAATTAGGCAAAAAG	58.242	36.000	0.00	0.00	0.00	2.27
611	1019	6.765512	TCTGGGAAAAATTAGGCAAAAAGTTG	59.234	34.615	0.00	0.00	37.83	3.16
612	1020	5.825151	TGGGAAAAATTAGGCAAAAAGTTGG	59.175	36.000	0.00	0.00	35.10	3.77
613	1021	5.240623	GGGAAAAATTAGGCAAAAAGTTGGG	59.759	40.000	0.00	0.00	35.10	4.12
614	1022	6.058833	GGAAAAATTAGGCAAAAAGTTGGGA	58.941	36.000	0.00	0.00	35.10	4.37
615	1023	6.017440	GGAAAAATTAGGCAAAAAGTTGGGAC	60.017	38.462	0.00	0.00	35.10	4.46
616	1024	5.622346	AAATTAGGCAAAAAGTTGGGACA	57.378	34.783	0.00	0.00	35.10	4.02
617	1025	4.600692	ATTAGGCAAAAAGTTGGGACAC	57.399	40.909	0.00	0.00	39.29	3.67
618	1026	1.859302	AGGCAAAAAGTTGGGACACA	58.141	45.000	0.00	0.00	39.29	3.72
619	1027	2.397597	AGGCAAAAAGTTGGGACACAT	58.602	42.857	0.00	0.00	39.29	3.21
620	1028	2.771372	AGGCAAAAAGTTGGGACACATT	59.229	40.909	0.00	0.00	39.29	2.71
621	1029	3.130633	GGCAAAAAGTTGGGACACATTC	58.869	45.455	0.00	0.00	39.29	2.67
622	1030	3.181466	GGCAAAAAGTTGGGACACATTCT	60.181	43.478	0.00	0.00	39.29	2.40
623	1031	4.441792	GCAAAAAGTTGGGACACATTCTT	58.558	39.130	0.00	0.00	39.29	2.52
624	1032	4.875536	GCAAAAAGTTGGGACACATTCTTT	59.124	37.500	3.52	3.52	39.29	2.52
625	1033	5.353956	GCAAAAAGTTGGGACACATTCTTTT	59.646	36.000	12.40	12.40	41.15	2.27
626	1034	6.128035	GCAAAAAGTTGGGACACATTCTTTTT	60.128	34.615	19.25	19.25	44.50	1.94
667	1075	5.221621	GGGACACATTCTGGGAAAATGAAAA	60.222	40.000	3.06	0.00	37.51	2.29
669	1077	7.310361	GGGACACATTCTGGGAAAATGAAAATA	60.310	37.037	3.06	0.00	37.51	1.40
670	1078	7.761249	GGACACATTCTGGGAAAATGAAAATAG	59.239	37.037	3.06	0.00	37.51	1.73
671	1079	8.193953	ACACATTCTGGGAAAATGAAAATAGT	57.806	30.769	3.06	0.00	37.51	2.12
672	1080	8.090214	ACACATTCTGGGAAAATGAAAATAGTG	58.910	33.333	3.06	0.00	37.51	2.74
674	1082	7.454380	ACATTCTGGGAAAATGAAAATAGTGGA	59.546	33.333	3.06	0.00	37.51	4.02
679	1087	7.319646	TGGGAAAATGAAAATAGTGGAAATCG	58.680	34.615	0.00	0.00	0.00	3.34
680	1088	6.255670	GGGAAAATGAAAATAGTGGAAATCGC	59.744	38.462	0.00	0.00	0.00	4.58
681	1089	7.035612	GGAAAATGAAAATAGTGGAAATCGCT	58.964	34.615	0.00	0.00	39.84	4.93
690	1101	3.335579	AGTGGAAATCGCTACTTGGTTC	58.664	45.455	0.00	0.00	33.87	3.62
756	1167	8.281531	TCTACCCATCTGTTTGATCCATTTAAT	58.718	33.333	0.00	0.00	32.05	1.40
759	1170	8.863086	ACCCATCTGTTTGATCCATTTAATATG	58.137	33.333	0.00	0.00	32.05	1.78
979	1827	6.702329	ACAACCTCGTATCAGAAAGAATCTT	58.298	36.000	0.00	0.00	35.73	2.40
980	1828	7.162082	ACAACCTCGTATCAGAAAGAATCTTT	58.838	34.615	8.12	8.12	35.73	2.52
981	1829	7.118390	ACAACCTCGTATCAGAAAGAATCTTTG	59.882	37.037	13.55	0.38	35.73	2.77
1222	2524	2.517166	GGCTCGATTTCCTGCCCC	60.517	66.667	0.00	0.00	39.49	5.80
1793	3128	4.200283	CCTCTCCAGCCTCGACGC	62.200	72.222	0.00	0.00	0.00	5.19
2048	3386	0.549950	AGCTATGCAGGCATCCAGTT	59.450	50.000	10.48	0.00	37.82	3.16
2140	3478	2.254651	GCAGCAGTTCACAGCAGC	59.745	61.111	0.00	0.00	34.29	5.25
2141	3479	2.549198	GCAGCAGTTCACAGCAGCA	61.549	57.895	6.81	0.00	39.84	4.41
2142	3480	1.863662	GCAGCAGTTCACAGCAGCAT	61.864	55.000	6.81	0.00	39.84	3.79
2143	3481	0.109735	CAGCAGTTCACAGCAGCATG	60.110	55.000	0.00	0.00	40.87	4.06
2144	3482	0.536687	AGCAGTTCACAGCAGCATGT	60.537	50.000	0.00	0.00	39.31	3.21
2184	3597	8.486210	TGTGCTCAGTTCCTTCTTATATGTATT	58.514	33.333	0.00	0.00	0.00	1.89
2258	3768	2.431782	CCAACCCCTAAATTCATGCCTG	59.568	50.000	0.00	0.00	0.00	4.85
2259	3769	1.780503	ACCCCTAAATTCATGCCTGC	58.219	50.000	0.00	0.00	0.00	4.85
2334	4034	3.903714	TGGCAGGATATTAGCAGCTTCTA	59.096	43.478	0.00	0.00	0.00	2.10
2443	4146	2.991540	GGAGTGGGGTTTGCAGCC	60.992	66.667	1.17	1.17	40.23	4.85
2518	4221	0.579156	CGAGGGACGCTACGTAGTAC	59.421	60.000	22.98	14.03	41.37	2.73
2529	4232	5.355350	ACGCTACGTAGTACAGGAGTAAAAT	59.645	40.000	22.98	0.00	45.11	1.82
2639	4346	4.279671	TGGTGGTTCATTGACATTAACACC	59.720	41.667	13.97	13.97	0.00	4.16
2674	4381	3.441572	AGCTTTCTTTTGATGTCGGGATG	59.558	43.478	0.00	0.00	0.00	3.51
2754	4544	3.344515	GTTCCTCCATCGTTAAAAGCCT	58.655	45.455	0.00	0.00	0.00	4.58
2797	4587	7.097834	GGTATATGCAAGGTAGATAGTCCAAC	58.902	42.308	0.00	0.00	0.00	3.77
3043	4836	9.542462	GTTAACAATGATAGTATGGCTGACTTA	57.458	33.333	0.00	0.00	0.00	2.24

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
20	21	1.401018	CGGTTCGCTTGACAAATTCCC	60.401	52.381	0.00	0.00	0.00	3.97
40	41	2.480416	CCTGACGTCTATGAAGGAGTGC	60.480	54.545	17.92	0.00	0.00	4.40
126	422	3.169512	ACTCCCCGGAATTTCAATTGT	57.830	42.857	0.73	0.00	0.00	2.71
156	454	5.079689	TGTGAGCGGTCTTATCAATACAA	57.920	39.130	16.64	0.00	0.00	2.41
241	642	9.290988	TGTAGCTCCAAAATGTTTCAGTTTATA	57.709	29.630	0.00	0.00	30.48	0.98
314	715	7.546667	TCTGTTATTCGTATTAACAACCACTCC	59.453	37.037	8.25	0.00	33.90	3.85
467	874	7.040473	TCCGATTGAGAGAAGAACCTATAAC	57.960	40.000	0.00	0.00	0.00	1.89
485	892	5.450412	GCATAATGACCATGTTGTTCCGATT	60.450	40.000	0.00	0.00	0.00	3.34
594	1002	5.104735	TGTGTCCCAACTTTTTGCCTAATTT	60.105	36.000	0.00	0.00	0.00	1.82
628	1036	6.783708	ATGTGTCCCAACTAACTTCAAAAA	57.216	33.333	0.00	0.00	0.00	1.94
629	1037	6.605594	AGAATGTGTCCCAACTAACTTCAAAA	59.394	34.615	0.00	0.00	0.00	2.44
630	1038	6.039270	CAGAATGTGTCCCAACTAACTTCAAA	59.961	38.462	0.00	0.00	0.00	2.69
631	1039	5.530915	CAGAATGTGTCCCAACTAACTTCAA	59.469	40.000	0.00	0.00	0.00	2.69
632	1040	5.063204	CAGAATGTGTCCCAACTAACTTCA	58.937	41.667	0.00	0.00	0.00	3.02
633	1041	4.455877	CCAGAATGTGTCCCAACTAACTTC	59.544	45.833	0.00	0.00	0.00	3.01
634	1042	4.398319	CCAGAATGTGTCCCAACTAACTT	58.602	43.478	0.00	0.00	0.00	2.66
635	1043	3.244911	CCCAGAATGTGTCCCAACTAACT	60.245	47.826	0.00	0.00	0.00	2.24
636	1044	3.081804	CCCAGAATGTGTCCCAACTAAC	58.918	50.000	0.00	0.00	0.00	2.34
637	1045	2.983192	TCCCAGAATGTGTCCCAACTAA	59.017	45.455	0.00	0.00	0.00	2.24
638	1046	2.626785	TCCCAGAATGTGTCCCAACTA	58.373	47.619	0.00	0.00	0.00	2.24
639	1047	1.444933	TCCCAGAATGTGTCCCAACT	58.555	50.000	0.00	0.00	0.00	3.16
640	1048	2.286365	TTCCCAGAATGTGTCCCAAC	57.714	50.000	0.00	0.00	0.00	3.77
641	1049	3.320610	TTTTCCCAGAATGTGTCCCAA	57.679	42.857	0.00	0.00	0.00	4.12
642	1050	3.164268	CATTTTCCCAGAATGTGTCCCA	58.836	45.455	0.00	0.00	31.47	4.37
643	1051	3.430453	TCATTTTCCCAGAATGTGTCCC	58.570	45.455	0.00	0.00	36.23	4.46
667	1075	4.755266	ACCAAGTAGCGATTTCCACTAT	57.245	40.909	0.00	0.00	0.00	2.12
669	1077	3.008049	AGAACCAAGTAGCGATTTCCACT	59.992	43.478	0.00	0.00	0.00	4.00
670	1078	3.335579	AGAACCAAGTAGCGATTTCCAC	58.664	45.455	0.00	0.00	0.00	4.02
671	1079	3.695830	AGAACCAAGTAGCGATTTCCA	57.304	42.857	0.00	0.00	0.00	3.53
672	1080	5.357257	TCATAGAACCAAGTAGCGATTTCC	58.643	41.667	0.00	0.00	0.00	3.13
674	1082	7.865706	AATTCATAGAACCAAGTAGCGATTT	57.134	32.000	0.00	0.00	0.00	2.17
679	1087	6.961554	CACGAAAATTCATAGAACCAAGTAGC	59.038	38.462	0.00	0.00	0.00	3.58
680	1088	7.119262	ACCACGAAAATTCATAGAACCAAGTAG	59.881	37.037	0.00	0.00	0.00	2.57
681	1089	6.938030	ACCACGAAAATTCATAGAACCAAGTA	59.062	34.615	0.00	0.00	0.00	2.24
690	1101	5.204833	CCGCATTACCACGAAAATTCATAG	58.795	41.667	0.00	0.00	0.00	2.23
843	1309	2.789203	GAAACGAGCGCGGCTACTG	61.789	63.158	15.86	2.12	39.88	2.74
979	1827	0.835971	TACCTGCCCTCTCACAGCAA	60.836	55.000	0.00	0.00	35.79	3.91
980	1828	0.835971	TTACCTGCCCTCTCACAGCA	60.836	55.000	0.00	0.00	32.37	4.41
981	1829	0.324943	TTTACCTGCCCTCTCACAGC	59.675	55.000	0.00	0.00	32.37	4.40
1452	2778	2.659610	AGGGACTCGAAGCTGCAC	59.340	61.111	1.02	0.00	0.00	4.57
1654	2980	1.685820	GGCCAGCCTTACTCCACTT	59.314	57.895	0.00	0.00	0.00	3.16
2088	3426	7.707104	ACATGGTTAGACAAAGAAGAAAACAG	58.293	34.615	0.00	0.00	0.00	3.16
2140	3478	8.369218	TGAGCACAATTAGTATACATGACATG	57.631	34.615	14.02	14.02	0.00	3.21
2141	3479	8.206867	ACTGAGCACAATTAGTATACATGACAT	58.793	33.333	5.50	0.00	0.00	3.06
2142	3480	7.555965	ACTGAGCACAATTAGTATACATGACA	58.444	34.615	5.50	0.00	0.00	3.58
2143	3481	8.425577	AACTGAGCACAATTAGTATACATGAC	57.574	34.615	5.50	0.00	0.00	3.06
2144	3482	7.710907	GGAACTGAGCACAATTAGTATACATGA	59.289	37.037	5.50	0.00	0.00	3.07
2258	3768	1.109920	TCTCTCTAGGTCGCATGGGC	61.110	60.000	4.59	0.26	0.00	5.36
2259	3769	0.671251	GTCTCTCTAGGTCGCATGGG	59.329	60.000	2.76	2.76	0.00	4.00
2518	4221	7.706179	ACACACATGTTTTTCATTTTACTCCTG	59.294	33.333	0.00	0.00	34.46	3.86
2529	4232	6.183360	TGGTAATTCGACACACATGTTTTTCA	60.183	34.615	0.00	0.00	39.95	2.69
2674	4381	0.376502	GATGAGAAGAAAGCTGGCGC	59.623	55.000	0.00	0.00	0.00	6.53
2754	4544	5.720371	ATACCACAGCAAGCAAAATAACA	57.280	34.783	0.00	0.00	0.00	2.41
2797	4587	7.442062	TCCATGCTATCATGTTATTAGTGTGTG	59.558	37.037	5.86	0.00	46.64	3.82
2850	4640	8.785329	TCATATTGACACTTGTGCTGTATTTA	57.215	30.769	0.10	0.00	0.00	1.40

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.