Multiple sequence alignment - TraesCS4B01G035700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G035700 chr4B 100.000 3501 0 0 1 3501 25947603 25944103 0.000000e+00 6466
1 TraesCS4B01G035700 chr4B 92.357 157 10 1 3133 3287 82019249 82019093 4.550000e-54 222
2 TraesCS4B01G035700 chr4A 89.116 1222 61 26 1924 3116 585211106 585212284 0.000000e+00 1454
3 TraesCS4B01G035700 chr4A 87.103 1070 56 22 791 1827 585209665 585210685 0.000000e+00 1136
4 TraesCS4B01G035700 chr4A 84.087 553 48 13 1 546 585208614 585209133 6.750000e-137 497
5 TraesCS4B01G035700 chr4A 88.889 171 12 2 3332 3501 585212598 585212762 1.650000e-48 204
6 TraesCS4B01G035700 chr4A 89.524 105 7 4 692 795 697941979 697942080 2.840000e-26 130
7 TraesCS4B01G035700 chr4D 89.074 1199 58 23 1818 2976 15450170 15449005 0.000000e+00 1421
8 TraesCS4B01G035700 chr4D 88.511 1088 35 34 791 1833 15451225 15450183 0.000000e+00 1234
9 TraesCS4B01G035700 chr4D 86.314 738 54 24 1 710 15451940 15451222 0.000000e+00 760
10 TraesCS4B01G035700 chr5D 94.631 149 5 3 3119 3267 55850468 55850613 9.780000e-56 228
11 TraesCS4B01G035700 chr5D 83.125 160 20 5 192 347 393616023 393615867 4.710000e-29 139
12 TraesCS4B01G035700 chr5B 96.403 139 2 2 3122 3260 233969194 233969329 3.520000e-55 226
13 TraesCS4B01G035700 chr5B 89.091 110 10 2 685 793 676928211 676928103 6.100000e-28 135
14 TraesCS4B01G035700 chr5B 89.524 105 9 2 707 811 544441509 544441407 7.890000e-27 132
15 TraesCS4B01G035700 chr5B 87.719 114 9 5 681 792 678507268 678507378 1.020000e-25 128
16 TraesCS4B01G035700 chr5A 95.714 140 5 1 3123 3261 508283793 508283654 1.260000e-54 224
17 TraesCS4B01G035700 chr5A 82.911 158 23 4 192 347 495380432 495380277 4.710000e-29 139
18 TraesCS4B01G035700 chr2D 95.105 143 3 4 3131 3270 100314160 100314019 4.550000e-54 222
19 TraesCS4B01G035700 chrUn 94.444 144 6 2 3121 3263 52994425 52994567 1.640000e-53 220
20 TraesCS4B01G035700 chrUn 93.793 145 9 0 3128 3272 16890320 16890464 5.880000e-53 219
21 TraesCS4B01G035700 chr3A 92.763 152 7 4 3119 3268 499114123 499114272 2.120000e-52 217
22 TraesCS4B01G035700 chr2A 92.568 148 9 2 3134 3280 215107186 215107332 9.850000e-51 211
23 TraesCS4B01G035700 chr6B 90.741 108 10 0 693 800 259879747 259879640 1.010000e-30 145
24 TraesCS4B01G035700 chr1B 83.019 159 22 4 192 347 495146967 495146811 4.710000e-29 139
25 TraesCS4B01G035700 chr1B 91.667 96 8 0 697 792 636266837 636266742 2.190000e-27 134
26 TraesCS4B01G035700 chr7B 90.722 97 9 0 696 792 465970487 465970583 2.840000e-26 130
27 TraesCS4B01G035700 chr2B 90.816 98 8 1 704 801 643338710 643338806 2.840000e-26 130
28 TraesCS4B01G035700 chr3B 87.963 108 10 3 707 813 787556038 787555933 1.320000e-24 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G035700 chr4B 25944103 25947603 3500 True 6466.000000 6466 100.000000 1 3501 1 chr4B.!!$R1 3500
1 TraesCS4B01G035700 chr4A 585208614 585212762 4148 False 822.750000 1454 87.298750 1 3501 4 chr4A.!!$F2 3500
2 TraesCS4B01G035700 chr4D 15449005 15451940 2935 True 1138.333333 1421 87.966333 1 2976 3 chr4D.!!$R1 2975

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
992 1364 0.327 CCTCATCCCTCCCTTCACCT 60.327 60.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2731 3548 0.179166 TACAACGCGATGGTACGACC 60.179 55.0 20.87 0.0 39.22 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 6.530181 AGTGTTGGAACGAAAACATTTTTCTC 59.470 34.615 9.16 2.26 38.47 2.87
51 52 7.459795 TTTCTCGATGAGATATATGCAGAGT 57.540 36.000 0.00 0.00 38.56 3.24
53 54 8.567285 TTCTCGATGAGATATATGCAGAGTTA 57.433 34.615 0.00 0.00 38.56 2.24
98 106 4.093743 TGTACAGCTCAATTAGAGTCCCA 58.906 43.478 0.00 0.00 46.47 4.37
142 150 2.241176 AGTCCCTTCACTCAAAACCACA 59.759 45.455 0.00 0.00 0.00 4.17
162 170 9.590451 AACCACATTCTGCAATAATTTAATCAG 57.410 29.630 0.00 0.00 0.00 2.90
225 233 7.569599 ACTTTTCTTTATCTTCTCCTACCCA 57.430 36.000 0.00 0.00 0.00 4.51
268 276 5.935789 TCCTACCAAAACCTCAACTAAATCG 59.064 40.000 0.00 0.00 0.00 3.34
456 481 6.066690 CCTCAAATTGTCCTCATATGTCCAT 58.933 40.000 1.90 0.00 0.00 3.41
534 559 2.490509 ACCAATCATGTGCATGTGACTG 59.509 45.455 11.38 6.06 39.72 3.51
537 562 2.565046 TCATGTGCATGTGACTGGAA 57.435 45.000 11.38 0.00 39.72 3.53
545 571 5.221481 TGTGCATGTGACTGGAAATGAAAAT 60.221 36.000 0.00 0.00 0.00 1.82
554 580 6.889722 TGACTGGAAATGAAAATAGTAAGGGG 59.110 38.462 0.00 0.00 0.00 4.79
559 585 7.505585 TGGAAATGAAAATAGTAAGGGGCATAG 59.494 37.037 0.00 0.00 0.00 2.23
562 588 5.376625 TGAAAATAGTAAGGGGCATAGCTG 58.623 41.667 0.00 0.00 0.00 4.24
583 609 5.021033 TGCATGAAACAAACAAATGAGGT 57.979 34.783 0.00 0.00 0.00 3.85
585 611 4.148696 GCATGAAACAAACAAATGAGGTCG 59.851 41.667 0.00 0.00 0.00 4.79
603 629 3.733960 CGGAGCGGACACGTCTCA 61.734 66.667 3.91 0.00 41.64 3.27
606 632 3.343788 GAGCGGACACGTCTCAGGG 62.344 68.421 0.00 0.00 43.45 4.45
607 633 4.436998 GCGGACACGTCTCAGGGG 62.437 72.222 0.00 0.00 43.45 4.79
608 634 2.675423 CGGACACGTCTCAGGGGA 60.675 66.667 0.00 0.00 34.81 4.81
609 635 2.052690 CGGACACGTCTCAGGGGAT 61.053 63.158 0.00 0.00 34.81 3.85
610 636 1.517832 GGACACGTCTCAGGGGATG 59.482 63.158 0.00 0.00 0.00 3.51
611 637 1.258445 GGACACGTCTCAGGGGATGT 61.258 60.000 0.00 0.00 36.05 3.06
614 640 3.220110 GACACGTCTCAGGGGATGTATA 58.780 50.000 0.00 0.00 34.17 1.47
633 659 9.712305 GATGTATATATCGGGGATCAAATTAGG 57.288 37.037 0.00 0.00 0.00 2.69
642 668 4.102054 GGGGATCAAATTAGGTTAGTCCGA 59.898 45.833 0.00 0.00 41.99 4.55
643 669 5.397109 GGGGATCAAATTAGGTTAGTCCGAA 60.397 44.000 0.00 0.00 41.99 4.30
664 690 7.392673 TCCGAATGTAGATGGTCTAAGGTATAC 59.607 40.741 0.00 0.00 29.58 1.47
670 696 3.281727 TGGTCTAAGGTATACGACGGT 57.718 47.619 0.00 0.00 0.00 4.83
688 717 5.107989 CGACGGTCACGATTAATATTGAAGG 60.108 44.000 9.10 0.24 44.60 3.46
716 745 6.413052 TGTATATTACTAGCTACTCCCTCCG 58.587 44.000 0.00 0.00 0.00 4.63
718 747 3.659183 TTACTAGCTACTCCCTCCGTT 57.341 47.619 0.00 0.00 0.00 4.44
720 749 2.377073 ACTAGCTACTCCCTCCGTTTC 58.623 52.381 0.00 0.00 0.00 2.78
722 751 1.640917 AGCTACTCCCTCCGTTTCAA 58.359 50.000 0.00 0.00 0.00 2.69
723 752 2.188817 AGCTACTCCCTCCGTTTCAAT 58.811 47.619 0.00 0.00 0.00 2.57
725 754 3.009143 AGCTACTCCCTCCGTTTCAATTT 59.991 43.478 0.00 0.00 0.00 1.82
726 755 4.224370 AGCTACTCCCTCCGTTTCAATTTA 59.776 41.667 0.00 0.00 0.00 1.40
727 756 4.331992 GCTACTCCCTCCGTTTCAATTTAC 59.668 45.833 0.00 0.00 0.00 2.01
728 757 4.635699 ACTCCCTCCGTTTCAATTTACT 57.364 40.909 0.00 0.00 0.00 2.24
730 759 3.592059 TCCCTCCGTTTCAATTTACTCG 58.408 45.455 0.00 0.00 0.00 4.18
731 760 3.007182 TCCCTCCGTTTCAATTTACTCGT 59.993 43.478 0.00 0.00 0.00 4.18
732 761 3.370061 CCCTCCGTTTCAATTTACTCGTC 59.630 47.826 0.00 0.00 0.00 4.20
733 762 3.060363 CCTCCGTTTCAATTTACTCGTCG 59.940 47.826 0.00 0.00 0.00 5.12
734 763 3.641648 TCCGTTTCAATTTACTCGTCGT 58.358 40.909 0.00 0.00 0.00 4.34
736 765 3.182972 CCGTTTCAATTTACTCGTCGTGT 59.817 43.478 5.19 5.19 0.00 4.49
737 766 4.318263 CCGTTTCAATTTACTCGTCGTGTT 60.318 41.667 5.14 0.00 0.00 3.32
739 768 5.673717 CGTTTCAATTTACTCGTCGTGTTTT 59.326 36.000 5.14 0.00 0.00 2.43
740 769 6.193228 CGTTTCAATTTACTCGTCGTGTTTTT 59.807 34.615 5.14 0.00 0.00 1.94
741 770 7.370317 CGTTTCAATTTACTCGTCGTGTTTTTA 59.630 33.333 5.14 0.00 0.00 1.52
742 771 8.667204 GTTTCAATTTACTCGTCGTGTTTTTAG 58.333 33.333 5.14 0.00 0.00 1.85
745 774 8.057742 TCAATTTACTCGTCGTGTTTTTAGTTC 58.942 33.333 5.14 0.00 0.00 3.01
746 775 6.884096 TTTACTCGTCGTGTTTTTAGTTCA 57.116 33.333 5.14 0.00 0.00 3.18
747 776 4.766969 ACTCGTCGTGTTTTTAGTTCAC 57.233 40.909 0.00 0.00 0.00 3.18
749 778 4.807304 ACTCGTCGTGTTTTTAGTTCACAT 59.193 37.500 0.00 0.00 33.04 3.21
750 779 5.292589 ACTCGTCGTGTTTTTAGTTCACATT 59.707 36.000 0.00 0.00 33.04 2.71
751 780 6.109320 TCGTCGTGTTTTTAGTTCACATTT 57.891 33.333 0.00 0.00 33.04 2.32
752 781 5.960683 TCGTCGTGTTTTTAGTTCACATTTG 59.039 36.000 0.00 0.00 33.04 2.32
754 783 6.466413 CGTCGTGTTTTTAGTTCACATTTGAA 59.534 34.615 0.00 0.00 39.55 2.69
766 795 6.438259 TTCACATTTGAACTAAAACCACGA 57.562 33.333 0.00 0.00 36.79 4.35
767 796 5.812652 TCACATTTGAACTAAAACCACGAC 58.187 37.500 0.00 0.00 0.00 4.34
768 797 4.668837 CACATTTGAACTAAAACCACGACG 59.331 41.667 0.00 0.00 0.00 5.12
769 798 4.571580 ACATTTGAACTAAAACCACGACGA 59.428 37.500 0.00 0.00 0.00 4.20
770 799 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
771 800 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
774 803 5.347342 TGAACTAAAACCACGACGAGTAAA 58.653 37.500 0.00 0.00 0.00 2.01
775 804 5.984926 TGAACTAAAACCACGACGAGTAAAT 59.015 36.000 0.00 0.00 0.00 1.40
776 805 6.144402 TGAACTAAAACCACGACGAGTAAATC 59.856 38.462 0.00 0.00 0.00 2.17
787 816 1.049402 GAGTAAATCGGGAGGGAGGG 58.951 60.000 0.00 0.00 0.00 4.30
788 817 0.640495 AGTAAATCGGGAGGGAGGGA 59.360 55.000 0.00 0.00 0.00 4.20
789 818 1.049402 GTAAATCGGGAGGGAGGGAG 58.951 60.000 0.00 0.00 0.00 4.30
809 1172 4.816925 GGAGTACTTTTATAGCAGGCAAGG 59.183 45.833 0.00 0.00 0.00 3.61
824 1190 1.069906 GCAAGGTAAGCAACGTCTGTG 60.070 52.381 0.00 0.00 0.00 3.66
896 1262 0.392060 TCCATAGCAGCACAGCACAG 60.392 55.000 0.00 0.00 36.85 3.66
897 1263 1.428219 CATAGCAGCACAGCACAGC 59.572 57.895 0.00 0.00 36.85 4.40
898 1264 1.002990 ATAGCAGCACAGCACAGCA 60.003 52.632 0.00 0.00 36.85 4.41
899 1265 1.303799 ATAGCAGCACAGCACAGCAC 61.304 55.000 0.00 0.00 36.85 4.40
900 1266 2.663423 TAGCAGCACAGCACAGCACA 62.663 55.000 0.00 0.00 36.85 4.57
992 1364 0.327000 CCTCATCCCTCCCTTCACCT 60.327 60.000 0.00 0.00 0.00 4.00
995 1367 1.383248 ATCCCTCCCTTCACCTCCG 60.383 63.158 0.00 0.00 0.00 4.63
996 1368 1.886730 ATCCCTCCCTTCACCTCCGA 61.887 60.000 0.00 0.00 0.00 4.55
997 1369 1.383248 CCCTCCCTTCACCTCCGAT 60.383 63.158 0.00 0.00 0.00 4.18
1037 1412 4.154347 GGCTCCGGAGACTGCCAG 62.154 72.222 35.69 7.23 44.34 4.85
1150 1525 1.371183 CTCGGGAAGCAACTGGTGA 59.629 57.895 0.00 0.00 0.00 4.02
1151 1526 0.671781 CTCGGGAAGCAACTGGTGAG 60.672 60.000 0.00 0.00 0.00 3.51
1152 1527 1.118965 TCGGGAAGCAACTGGTGAGA 61.119 55.000 0.00 0.00 0.00 3.27
1153 1528 0.951040 CGGGAAGCAACTGGTGAGAC 60.951 60.000 0.00 0.00 0.00 3.36
1154 1529 0.108585 GGGAAGCAACTGGTGAGACA 59.891 55.000 0.00 0.00 0.00 3.41
1155 1530 1.230324 GGAAGCAACTGGTGAGACAC 58.770 55.000 0.00 0.00 0.00 3.67
1367 1782 0.172803 CGTCCTCGGGTAAAGTCCTG 59.827 60.000 0.00 0.00 35.33 3.86
1370 1785 0.108138 CCTCGGGTAAAGTCCTGCAG 60.108 60.000 6.78 6.78 34.12 4.41
1372 1787 1.822990 CTCGGGTAAAGTCCTGCAGTA 59.177 52.381 13.81 0.00 34.12 2.74
1433 1873 5.514279 GCTATAGCTTGCAGTTTTACCATG 58.486 41.667 17.75 0.00 38.21 3.66
1440 1880 7.037438 AGCTTGCAGTTTTACCATGAATAATG 58.963 34.615 0.00 0.00 35.89 1.90
1452 1892 1.322442 GAATAATGGTCTGGCTGGCC 58.678 55.000 8.23 8.23 41.87 5.36
1533 1973 0.601558 TCTCTTCTGCCACCGTACAC 59.398 55.000 0.00 0.00 0.00 2.90
1534 1974 0.603569 CTCTTCTGCCACCGTACACT 59.396 55.000 0.00 0.00 0.00 3.55
1535 1975 1.816835 CTCTTCTGCCACCGTACACTA 59.183 52.381 0.00 0.00 0.00 2.74
1536 1976 1.816835 TCTTCTGCCACCGTACACTAG 59.183 52.381 0.00 0.00 0.00 2.57
1537 1977 1.816835 CTTCTGCCACCGTACACTAGA 59.183 52.381 0.00 0.00 0.00 2.43
1593 2033 5.494863 CATGAACGAAATGCATGCATATG 57.505 39.130 32.36 24.17 35.31 1.78
1710 2161 0.764890 TGGGAGAGGTGAAAGTGGTG 59.235 55.000 0.00 0.00 0.00 4.17
1786 2237 1.670406 CTGCCAGGTCACAGACTGC 60.670 63.158 1.25 0.00 35.90 4.40
1787 2238 2.359230 GCCAGGTCACAGACTGCC 60.359 66.667 1.25 0.00 32.47 4.85
1809 2260 3.244353 CCCACTCATCTTAGCCACTATGG 60.244 52.174 0.00 0.00 41.55 2.74
1853 2629 6.756074 TGTGTTTCTTGGAAAATGTTGCTAAG 59.244 34.615 0.00 0.00 0.00 2.18
1854 2630 5.752955 TGTTTCTTGGAAAATGTTGCTAAGC 59.247 36.000 0.00 0.00 0.00 3.09
1855 2631 4.519540 TCTTGGAAAATGTTGCTAAGCC 57.480 40.909 0.00 0.00 0.00 4.35
1856 2632 3.894427 TCTTGGAAAATGTTGCTAAGCCA 59.106 39.130 0.00 0.00 0.00 4.75
1857 2633 4.343526 TCTTGGAAAATGTTGCTAAGCCAA 59.656 37.500 0.00 0.00 33.55 4.52
1912 2692 8.910351 ACAAATCAAGAAAGAAGCTTAGTAGT 57.090 30.769 0.00 0.00 0.00 2.73
1921 2701 5.069501 AGAAGCTTAGTAGTAAACGGGTG 57.930 43.478 0.00 0.00 0.00 4.61
1953 2736 0.592637 TGCGGCTCATTTCTTGTGTG 59.407 50.000 0.00 0.00 0.00 3.82
1960 2743 3.120649 GCTCATTTCTTGTGTGACGTACC 60.121 47.826 0.00 0.00 0.00 3.34
1962 2745 4.055360 TCATTTCTTGTGTGACGTACCTG 58.945 43.478 0.00 0.00 0.00 4.00
2064 2847 5.697178 TGTAAGCTTGTCGTATTTAACTGCA 59.303 36.000 9.86 0.00 0.00 4.41
2221 3015 4.240883 CGAAAGCGATGTGTAACTAACC 57.759 45.455 0.00 0.00 40.82 2.85
2222 3016 3.676172 CGAAAGCGATGTGTAACTAACCA 59.324 43.478 0.00 0.00 40.82 3.67
2223 3017 4.150980 CGAAAGCGATGTGTAACTAACCAA 59.849 41.667 0.00 0.00 40.82 3.67
2244 3038 1.202510 TGGCAACTTACGTACGGTTGT 60.203 47.619 25.96 16.56 41.36 3.32
2272 3066 0.392461 TCTCGTTGCATTAGGTGGGC 60.392 55.000 0.00 0.00 0.00 5.36
2353 3147 3.255379 GGCTTCATCGACGACGCC 61.255 66.667 13.41 13.41 42.34 5.68
2577 3387 7.075741 GTCTTCGTCAAGATCTATTAGCTCTC 58.924 42.308 0.00 0.00 40.88 3.20
2615 3432 3.674753 TCATGCATGTAATATCGAGCGTG 59.325 43.478 25.43 5.20 39.61 5.34
2720 3537 2.037511 CGGGTGTTGGAGTTGTACCTTA 59.962 50.000 0.00 0.00 0.00 2.69
2762 3579 0.672711 GCGTTGTACTCTTCCCACCC 60.673 60.000 0.00 0.00 0.00 4.61
2781 3601 6.435904 CCCACCCACTATTTTATGTTTTCTGA 59.564 38.462 0.00 0.00 0.00 3.27
2815 3635 0.393820 TGCACAGTCATGTCAGCAGA 59.606 50.000 0.00 0.00 37.65 4.26
2834 3654 2.089433 AACACAGCGCACTCGTTTCG 62.089 55.000 11.47 0.00 38.14 3.46
2835 3655 2.279252 ACAGCGCACTCGTTTCGT 60.279 55.556 11.47 0.00 38.14 3.85
2836 3656 1.008194 ACAGCGCACTCGTTTCGTA 60.008 52.632 11.47 0.00 38.14 3.43
2958 3787 2.559998 CAACCATGGTTGCGTAATCC 57.440 50.000 37.64 0.00 46.92 3.01
2986 3815 3.324108 ACGTACGTTGGGGCCCAT 61.324 61.111 29.34 15.08 31.53 4.00
3053 3882 2.941064 CACAGATCAACATAGCACCCAG 59.059 50.000 0.00 0.00 0.00 4.45
3057 3886 3.776969 AGATCAACATAGCACCCAGAAGA 59.223 43.478 0.00 0.00 0.00 2.87
3059 3888 2.637382 TCAACATAGCACCCAGAAGACA 59.363 45.455 0.00 0.00 0.00 3.41
3060 3889 3.264193 TCAACATAGCACCCAGAAGACAT 59.736 43.478 0.00 0.00 0.00 3.06
3061 3890 4.469586 TCAACATAGCACCCAGAAGACATA 59.530 41.667 0.00 0.00 0.00 2.29
3062 3891 5.130975 TCAACATAGCACCCAGAAGACATAT 59.869 40.000 0.00 0.00 0.00 1.78
3100 3929 1.400494 ACAAAAGGCACAGTTCACGTC 59.600 47.619 0.00 0.00 0.00 4.34
3113 3942 0.892755 TCACGTCGGGCATAGTTCTT 59.107 50.000 0.00 0.00 0.00 2.52
3114 3943 2.093890 TCACGTCGGGCATAGTTCTTA 58.906 47.619 0.00 0.00 0.00 2.10
3115 3944 2.098607 TCACGTCGGGCATAGTTCTTAG 59.901 50.000 0.00 0.00 0.00 2.18
3116 3945 1.202382 ACGTCGGGCATAGTTCTTAGC 60.202 52.381 0.00 0.00 0.00 3.09
3117 3946 1.867166 GTCGGGCATAGTTCTTAGCC 58.133 55.000 0.00 0.00 46.28 3.93
3121 3950 2.841442 GGCATAGTTCTTAGCCGGAT 57.159 50.000 5.05 0.00 37.41 4.18
3122 3951 3.955650 GGCATAGTTCTTAGCCGGATA 57.044 47.619 5.05 0.00 37.41 2.59
3123 3952 4.473477 GGCATAGTTCTTAGCCGGATAT 57.527 45.455 5.05 0.00 37.41 1.63
3124 3953 5.593679 GGCATAGTTCTTAGCCGGATATA 57.406 43.478 5.05 0.00 37.41 0.86
3125 3954 6.163135 GGCATAGTTCTTAGCCGGATATAT 57.837 41.667 5.05 0.00 37.41 0.86
3126 3955 6.583562 GGCATAGTTCTTAGCCGGATATATT 58.416 40.000 5.05 0.00 37.41 1.28
3127 3956 7.723324 GGCATAGTTCTTAGCCGGATATATTA 58.277 38.462 5.05 0.00 37.41 0.98
3128 3957 7.652507 GGCATAGTTCTTAGCCGGATATATTAC 59.347 40.741 5.05 0.00 37.41 1.89
3129 3958 8.414778 GCATAGTTCTTAGCCGGATATATTACT 58.585 37.037 5.05 7.55 0.00 2.24
3133 3962 9.924010 AGTTCTTAGCCGGATATATTACTAGAT 57.076 33.333 5.05 0.00 0.00 1.98
3138 3967 9.790344 TTAGCCGGATATATTACTAGATACTCC 57.210 37.037 5.05 0.00 0.00 3.85
3139 3968 7.232910 AGCCGGATATATTACTAGATACTCCC 58.767 42.308 5.05 0.00 0.00 4.30
3140 3969 7.073981 AGCCGGATATATTACTAGATACTCCCT 59.926 40.741 5.05 0.00 0.00 4.20
3141 3970 7.391275 GCCGGATATATTACTAGATACTCCCTC 59.609 44.444 5.05 0.00 0.00 4.30
3142 3971 7.884354 CCGGATATATTACTAGATACTCCCTCC 59.116 44.444 0.00 0.00 0.00 4.30
3143 3972 8.438373 CGGATATATTACTAGATACTCCCTCCA 58.562 40.741 0.00 0.00 0.00 3.86
3147 3976 3.443145 ACTAGATACTCCCTCCATCCG 57.557 52.381 0.00 0.00 0.00 4.18
3148 3977 2.987437 ACTAGATACTCCCTCCATCCGA 59.013 50.000 0.00 0.00 0.00 4.55
3149 3978 3.398292 ACTAGATACTCCCTCCATCCGAA 59.602 47.826 0.00 0.00 0.00 4.30
3150 3979 3.330126 AGATACTCCCTCCATCCGAAA 57.670 47.619 0.00 0.00 0.00 3.46
3151 3980 3.654273 AGATACTCCCTCCATCCGAAAA 58.346 45.455 0.00 0.00 0.00 2.29
3152 3981 4.235372 AGATACTCCCTCCATCCGAAAAT 58.765 43.478 0.00 0.00 0.00 1.82
3153 3982 5.403512 AGATACTCCCTCCATCCGAAAATA 58.596 41.667 0.00 0.00 0.00 1.40
3154 3983 3.840124 ACTCCCTCCATCCGAAAATAC 57.160 47.619 0.00 0.00 0.00 1.89
3155 3984 3.385115 ACTCCCTCCATCCGAAAATACT 58.615 45.455 0.00 0.00 0.00 2.12
3156 3985 3.780850 ACTCCCTCCATCCGAAAATACTT 59.219 43.478 0.00 0.00 0.00 2.24
3157 3986 4.130118 CTCCCTCCATCCGAAAATACTTG 58.870 47.826 0.00 0.00 0.00 3.16
3158 3987 3.521937 TCCCTCCATCCGAAAATACTTGT 59.478 43.478 0.00 0.00 0.00 3.16
3159 3988 3.877508 CCCTCCATCCGAAAATACTTGTC 59.122 47.826 0.00 0.00 0.00 3.18
3160 3989 4.513442 CCTCCATCCGAAAATACTTGTCA 58.487 43.478 0.00 0.00 0.00 3.58
3161 3990 5.126067 CCTCCATCCGAAAATACTTGTCAT 58.874 41.667 0.00 0.00 0.00 3.06
3162 3991 5.237344 CCTCCATCCGAAAATACTTGTCATC 59.763 44.000 0.00 0.00 0.00 2.92
3163 3992 5.739959 TCCATCCGAAAATACTTGTCATCA 58.260 37.500 0.00 0.00 0.00 3.07
3164 3993 6.176896 TCCATCCGAAAATACTTGTCATCAA 58.823 36.000 0.00 0.00 0.00 2.57
3165 3994 6.657117 TCCATCCGAAAATACTTGTCATCAAA 59.343 34.615 0.00 0.00 32.87 2.69
3166 3995 7.175816 TCCATCCGAAAATACTTGTCATCAAAA 59.824 33.333 0.00 0.00 32.87 2.44
3167 3996 7.975616 CCATCCGAAAATACTTGTCATCAAAAT 59.024 33.333 0.00 0.00 32.87 1.82
3168 3997 8.800972 CATCCGAAAATACTTGTCATCAAAATG 58.199 33.333 0.00 0.00 32.87 2.32
3169 3998 7.312154 TCCGAAAATACTTGTCATCAAAATGG 58.688 34.615 0.00 0.00 33.42 3.16
3170 3999 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
3171 4000 7.273381 CCGAAAATACTTGTCATCAAAATGGAC 59.727 37.037 0.00 0.00 33.42 4.02
3172 4001 7.007367 CGAAAATACTTGTCATCAAAATGGACG 59.993 37.037 0.00 0.00 33.42 4.79
3173 4002 7.447374 AAATACTTGTCATCAAAATGGACGA 57.553 32.000 0.00 0.00 33.42 4.20
3174 4003 7.447374 AATACTTGTCATCAAAATGGACGAA 57.553 32.000 0.00 0.00 33.42 3.85
3175 4004 5.766150 ACTTGTCATCAAAATGGACGAAA 57.234 34.783 0.00 0.00 33.42 3.46
3176 4005 6.142818 ACTTGTCATCAAAATGGACGAAAA 57.857 33.333 0.00 0.00 33.42 2.29
3177 4006 6.208644 ACTTGTCATCAAAATGGACGAAAAG 58.791 36.000 0.00 0.00 33.42 2.27
3178 4007 5.119931 TGTCATCAAAATGGACGAAAAGG 57.880 39.130 0.00 0.00 33.42 3.11
3179 4008 4.022416 TGTCATCAAAATGGACGAAAAGGG 60.022 41.667 0.00 0.00 33.42 3.95
3180 4009 4.217550 GTCATCAAAATGGACGAAAAGGGA 59.782 41.667 0.00 0.00 33.42 4.20
3181 4010 5.016173 TCATCAAAATGGACGAAAAGGGAT 58.984 37.500 0.00 0.00 33.42 3.85
3182 4011 4.782019 TCAAAATGGACGAAAAGGGATG 57.218 40.909 0.00 0.00 0.00 3.51
3183 4012 4.148838 TCAAAATGGACGAAAAGGGATGT 58.851 39.130 0.00 0.00 0.00 3.06
3184 4013 5.317808 TCAAAATGGACGAAAAGGGATGTA 58.682 37.500 0.00 0.00 0.00 2.29
3185 4014 5.949354 TCAAAATGGACGAAAAGGGATGTAT 59.051 36.000 0.00 0.00 0.00 2.29
3186 4015 6.094881 TCAAAATGGACGAAAAGGGATGTATC 59.905 38.462 0.00 0.00 0.00 2.24
3187 4016 5.373812 AATGGACGAAAAGGGATGTATCT 57.626 39.130 0.00 0.00 0.00 1.98
3188 4017 6.494666 AATGGACGAAAAGGGATGTATCTA 57.505 37.500 0.00 0.00 0.00 1.98
3189 4018 5.531122 TGGACGAAAAGGGATGTATCTAG 57.469 43.478 0.00 0.00 0.00 2.43
3190 4019 5.205821 TGGACGAAAAGGGATGTATCTAGA 58.794 41.667 0.00 0.00 0.00 2.43
3191 4020 5.659525 TGGACGAAAAGGGATGTATCTAGAA 59.340 40.000 0.00 0.00 0.00 2.10
3192 4021 5.984323 GGACGAAAAGGGATGTATCTAGAAC 59.016 44.000 0.00 0.00 0.00 3.01
3193 4022 6.183360 GGACGAAAAGGGATGTATCTAGAACT 60.183 42.308 0.00 0.00 0.00 3.01
3194 4023 7.014038 GGACGAAAAGGGATGTATCTAGAACTA 59.986 40.741 0.00 0.00 0.00 2.24
3195 4024 8.302515 ACGAAAAGGGATGTATCTAGAACTAA 57.697 34.615 0.00 0.00 0.00 2.24
3196 4025 8.755977 ACGAAAAGGGATGTATCTAGAACTAAA 58.244 33.333 0.00 0.00 0.00 1.85
3197 4026 9.595823 CGAAAAGGGATGTATCTAGAACTAAAA 57.404 33.333 0.00 0.00 0.00 1.52
3217 4046 9.845214 ACTAAAATACATCTAGATACATCCCCT 57.155 33.333 4.54 0.00 0.00 4.79
3225 4054 9.170890 ACATCTAGATACATCCCCTTTTATTCA 57.829 33.333 4.54 0.00 0.00 2.57
3231 4060 9.713684 AGATACATCCCCTTTTATTCATTTTGA 57.286 29.630 0.00 0.00 0.00 2.69
3234 4063 8.378115 ACATCCCCTTTTATTCATTTTGATGA 57.622 30.769 0.00 0.00 32.39 2.92
3235 4064 8.260114 ACATCCCCTTTTATTCATTTTGATGAC 58.740 33.333 0.00 0.00 32.39 3.06
3236 4065 7.789202 TCCCCTTTTATTCATTTTGATGACA 57.211 32.000 0.00 0.00 0.00 3.58
3237 4066 8.200024 TCCCCTTTTATTCATTTTGATGACAA 57.800 30.769 0.00 0.00 0.00 3.18
3238 4067 8.313292 TCCCCTTTTATTCATTTTGATGACAAG 58.687 33.333 0.00 0.00 37.32 3.16
3239 4068 8.096414 CCCCTTTTATTCATTTTGATGACAAGT 58.904 33.333 0.00 0.00 37.32 3.16
3246 4075 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
3247 4076 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
3248 4077 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
3249 4078 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
3250 4079 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
3251 4080 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
3252 4081 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
3253 4082 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
3254 4083 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3255 4084 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3256 4085 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3257 4086 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
3258 4087 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
3259 4088 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
3260 4089 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
3261 4090 2.044650 CCGGACGGAGGGAGTACA 60.045 66.667 4.40 0.00 37.50 2.90
3262 4091 1.679977 CCGGACGGAGGGAGTACAA 60.680 63.158 4.40 0.00 37.50 2.41
3263 4092 1.509923 CGGACGGAGGGAGTACAAC 59.490 63.158 0.00 0.00 0.00 3.32
3264 4093 1.246056 CGGACGGAGGGAGTACAACA 61.246 60.000 0.00 0.00 0.00 3.33
3273 4102 3.767673 GAGGGAGTACAACATAGGACACA 59.232 47.826 0.00 0.00 0.00 3.72
3295 4124 4.763793 CAGTTCATCACACCCAAAAGAGAT 59.236 41.667 0.00 0.00 0.00 2.75
3300 4129 7.252612 TCATCACACCCAAAAGAGATAGTTA 57.747 36.000 0.00 0.00 0.00 2.24
3304 4133 3.871594 CACCCAAAAGAGATAGTTAGCCG 59.128 47.826 0.00 0.00 0.00 5.52
3354 4434 4.757997 ATTAGCTAGAGGAGGTGAGGAT 57.242 45.455 0.00 0.00 37.09 3.24
3358 4438 0.551396 TAGAGGAGGTGAGGATGCGA 59.449 55.000 0.00 0.00 0.00 5.10
3377 4457 4.105486 GCGAAAATCACCATTTCTTAGCC 58.895 43.478 0.00 0.00 35.19 3.93
3380 4460 1.680338 ATCACCATTTCTTAGCCGGC 58.320 50.000 21.89 21.89 0.00 6.13
3384 4464 1.828224 CATTTCTTAGCCGGCCCCC 60.828 63.158 26.15 0.00 0.00 5.40
3386 4466 0.696485 ATTTCTTAGCCGGCCCCCTA 60.696 55.000 26.15 5.79 0.00 3.53
3447 4527 4.796231 CGTCCGCAACGGGAGGAG 62.796 72.222 6.13 0.00 46.91 3.69
3448 4528 4.452733 GTCCGCAACGGGAGGAGG 62.453 72.222 6.13 0.00 46.91 4.30
3450 4530 4.148825 CCGCAACGGGAGGAGGAG 62.149 72.222 0.00 0.00 44.15 3.69
3451 4531 4.148825 CGCAACGGGAGGAGGAGG 62.149 72.222 0.00 0.00 0.00 4.30
3452 4532 2.683933 GCAACGGGAGGAGGAGGA 60.684 66.667 0.00 0.00 0.00 3.71
3455 4535 0.687757 CAACGGGAGGAGGAGGATCA 60.688 60.000 0.00 0.00 36.25 2.92
3457 4537 0.178947 ACGGGAGGAGGAGGATCATC 60.179 60.000 0.00 0.00 46.92 2.92
3463 4543 3.830679 GAGGAGGATCATCGCCATC 57.169 57.895 0.56 0.00 35.64 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 7.646314 ACTTGCATCATGAATATTAACTCTGC 58.354 34.615 0.00 1.21 0.00 4.26
53 54 8.158169 ACATTCGTACTTGCATCATGAATATT 57.842 30.769 0.00 0.00 0.00 1.28
56 57 6.538381 TGTACATTCGTACTTGCATCATGAAT 59.462 34.615 0.00 0.00 46.88 2.57
98 106 7.819644 ACTAAACCTAACAAACGAAACAACTT 58.180 30.769 0.00 0.00 0.00 2.66
268 276 3.007290 AGGGAAATGCAAGGAAAAGCTTC 59.993 43.478 0.00 0.00 0.00 3.86
326 334 5.843969 TGCTCTTACACCCATCATATCCTAA 59.156 40.000 0.00 0.00 0.00 2.69
355 379 1.138069 GAAAAATATGGGGCCCGGTTG 59.862 52.381 19.83 0.00 0.00 3.77
362 386 2.293399 CGCTACAGGAAAAATATGGGGC 59.707 50.000 0.00 0.00 0.00 5.80
417 442 1.330655 TGAGGGATCCGGTTGAGAGC 61.331 60.000 5.45 0.00 0.00 4.09
419 444 1.651737 TTTGAGGGATCCGGTTGAGA 58.348 50.000 5.45 0.00 0.00 3.27
430 455 5.397899 GGACATATGAGGACAATTTGAGGGA 60.398 44.000 10.38 0.00 0.00 4.20
456 481 2.946990 GAGAAAGGGTTCACGGAAAACA 59.053 45.455 0.00 0.00 36.09 2.83
503 528 6.778834 TGCACATGATTGGTGAAGATAAAT 57.221 33.333 0.00 0.00 38.54 1.40
534 559 6.731292 ATGCCCCTTACTATTTTCATTTCC 57.269 37.500 0.00 0.00 0.00 3.13
537 562 6.491403 CAGCTATGCCCCTTACTATTTTCATT 59.509 38.462 0.00 0.00 0.00 2.57
559 585 4.084223 CCTCATTTGTTTGTTTCATGCAGC 60.084 41.667 0.00 0.00 0.00 5.25
562 588 4.148696 CGACCTCATTTGTTTGTTTCATGC 59.851 41.667 0.00 0.00 0.00 4.06
567 593 2.542824 CCGCGACCTCATTTGTTTGTTT 60.543 45.455 8.23 0.00 0.00 2.83
568 594 1.001815 CCGCGACCTCATTTGTTTGTT 60.002 47.619 8.23 0.00 0.00 2.83
601 627 3.534327 TCCCCGATATATACATCCCCTGA 59.466 47.826 0.00 0.00 0.00 3.86
602 628 3.923648 TCCCCGATATATACATCCCCTG 58.076 50.000 0.00 0.00 0.00 4.45
603 629 4.172041 TGATCCCCGATATATACATCCCCT 59.828 45.833 0.00 0.00 0.00 4.79
606 632 9.712305 CTAATTTGATCCCCGATATATACATCC 57.288 37.037 0.00 0.00 0.00 3.51
607 633 9.712305 CCTAATTTGATCCCCGATATATACATC 57.288 37.037 0.00 0.00 0.00 3.06
608 634 9.225682 ACCTAATTTGATCCCCGATATATACAT 57.774 33.333 0.00 0.00 0.00 2.29
609 635 8.618240 ACCTAATTTGATCCCCGATATATACA 57.382 34.615 0.00 0.00 0.00 2.29
614 640 7.311109 GGACTAACCTAATTTGATCCCCGATAT 60.311 40.741 0.00 0.00 35.41 1.63
633 659 5.517322 AGACCATCTACATTCGGACTAAC 57.483 43.478 0.00 0.00 0.00 2.34
642 668 7.094890 CGTCGTATACCTTAGACCATCTACATT 60.095 40.741 0.00 0.00 0.00 2.71
643 669 6.370994 CGTCGTATACCTTAGACCATCTACAT 59.629 42.308 0.00 0.00 0.00 2.29
664 690 5.107989 CCTTCAATATTAATCGTGACCGTCG 60.108 44.000 0.00 0.00 35.01 5.12
701 730 2.376109 TGAAACGGAGGGAGTAGCTAG 58.624 52.381 0.00 0.00 0.00 3.42
706 735 5.622914 CGAGTAAATTGAAACGGAGGGAGTA 60.623 44.000 0.00 0.00 0.00 2.59
708 737 3.617263 CGAGTAAATTGAAACGGAGGGAG 59.383 47.826 0.00 0.00 0.00 4.30
709 738 3.007182 ACGAGTAAATTGAAACGGAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
710 739 3.332034 ACGAGTAAATTGAAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
711 740 3.060363 CGACGAGTAAATTGAAACGGAGG 59.940 47.826 0.00 0.00 0.00 4.30
712 741 3.671928 ACGACGAGTAAATTGAAACGGAG 59.328 43.478 0.00 0.00 0.00 4.63
713 742 3.426191 CACGACGAGTAAATTGAAACGGA 59.574 43.478 0.00 0.00 0.00 4.69
714 743 3.182972 ACACGACGAGTAAATTGAAACGG 59.817 43.478 0.00 0.00 0.00 4.44
715 744 4.364817 ACACGACGAGTAAATTGAAACG 57.635 40.909 0.00 0.00 0.00 3.60
716 745 7.427238 AAAAACACGACGAGTAAATTGAAAC 57.573 32.000 0.00 0.00 0.00 2.78
718 747 7.908230 ACTAAAAACACGACGAGTAAATTGAA 58.092 30.769 0.00 0.00 0.00 2.69
720 749 7.847078 TGAACTAAAAACACGACGAGTAAATTG 59.153 33.333 0.00 0.00 0.00 2.32
722 751 7.010367 TGTGAACTAAAAACACGACGAGTAAAT 59.990 33.333 0.00 0.00 37.35 1.40
723 752 6.309980 TGTGAACTAAAAACACGACGAGTAAA 59.690 34.615 0.00 0.00 37.35 2.01
725 754 5.339177 TGTGAACTAAAAACACGACGAGTA 58.661 37.500 0.00 0.00 37.35 2.59
726 755 4.175516 TGTGAACTAAAAACACGACGAGT 58.824 39.130 0.00 0.00 37.35 4.18
727 756 4.765281 TGTGAACTAAAAACACGACGAG 57.235 40.909 0.00 0.00 37.35 4.18
728 757 5.721876 AATGTGAACTAAAAACACGACGA 57.278 34.783 0.00 0.00 37.35 4.20
730 759 7.728580 TTCAAATGTGAACTAAAAACACGAC 57.271 32.000 0.00 0.00 38.88 4.34
745 774 4.668837 CGTCGTGGTTTTAGTTCAAATGTG 59.331 41.667 0.00 0.00 0.00 3.21
746 775 4.571580 TCGTCGTGGTTTTAGTTCAAATGT 59.428 37.500 0.00 0.00 0.00 2.71
747 776 5.085636 TCGTCGTGGTTTTAGTTCAAATG 57.914 39.130 0.00 0.00 0.00 2.32
749 778 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
750 779 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
751 780 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
752 781 5.888412 TTTACTCGTCGTGGTTTTAGTTC 57.112 39.130 0.00 0.00 0.00 3.01
754 783 4.618489 CGATTTACTCGTCGTGGTTTTAGT 59.382 41.667 0.00 0.00 42.56 2.24
755 784 4.030977 CCGATTTACTCGTCGTGGTTTTAG 59.969 45.833 0.00 0.00 46.18 1.85
756 785 3.919804 CCGATTTACTCGTCGTGGTTTTA 59.080 43.478 0.00 0.00 46.18 1.52
758 787 2.331194 CCGATTTACTCGTCGTGGTTT 58.669 47.619 0.00 0.00 46.18 3.27
759 788 1.403249 CCCGATTTACTCGTCGTGGTT 60.403 52.381 0.00 0.00 46.18 3.67
761 790 0.452987 TCCCGATTTACTCGTCGTGG 59.547 55.000 0.00 0.00 46.18 4.94
762 791 1.533338 CCTCCCGATTTACTCGTCGTG 60.533 57.143 0.00 0.00 46.18 4.35
764 793 0.030369 CCCTCCCGATTTACTCGTCG 59.970 60.000 0.00 0.00 46.18 5.12
765 794 1.337387 CTCCCTCCCGATTTACTCGTC 59.663 57.143 0.00 0.00 46.18 4.20
766 795 1.400737 CTCCCTCCCGATTTACTCGT 58.599 55.000 0.00 0.00 46.18 4.18
768 797 1.049402 CCCTCCCTCCCGATTTACTC 58.951 60.000 0.00 0.00 0.00 2.59
769 798 0.640495 TCCCTCCCTCCCGATTTACT 59.360 55.000 0.00 0.00 0.00 2.24
770 799 1.049402 CTCCCTCCCTCCCGATTTAC 58.951 60.000 0.00 0.00 0.00 2.01
771 800 0.640495 ACTCCCTCCCTCCCGATTTA 59.360 55.000 0.00 0.00 0.00 1.40
774 803 1.000041 AGTACTCCCTCCCTCCCGAT 61.000 60.000 0.00 0.00 0.00 4.18
775 804 1.219824 AAGTACTCCCTCCCTCCCGA 61.220 60.000 0.00 0.00 0.00 5.14
776 805 0.325390 AAAGTACTCCCTCCCTCCCG 60.325 60.000 0.00 0.00 0.00 5.14
777 806 1.968278 AAAAGTACTCCCTCCCTCCC 58.032 55.000 0.00 0.00 0.00 4.30
778 807 4.283978 GCTATAAAAGTACTCCCTCCCTCC 59.716 50.000 0.00 0.00 0.00 4.30
779 808 4.900054 TGCTATAAAAGTACTCCCTCCCTC 59.100 45.833 0.00 0.00 0.00 4.30
781 810 4.040584 CCTGCTATAAAAGTACTCCCTCCC 59.959 50.000 0.00 0.00 0.00 4.30
782 811 4.503469 GCCTGCTATAAAAGTACTCCCTCC 60.503 50.000 0.00 0.00 0.00 4.30
783 812 4.101119 TGCCTGCTATAAAAGTACTCCCTC 59.899 45.833 0.00 0.00 0.00 4.30
785 814 4.417426 TGCCTGCTATAAAAGTACTCCC 57.583 45.455 0.00 0.00 0.00 4.30
786 815 4.816925 CCTTGCCTGCTATAAAAGTACTCC 59.183 45.833 0.00 0.00 0.00 3.85
787 816 5.429130 ACCTTGCCTGCTATAAAAGTACTC 58.571 41.667 0.00 0.00 0.00 2.59
788 817 5.437191 ACCTTGCCTGCTATAAAAGTACT 57.563 39.130 0.00 0.00 0.00 2.73
789 818 6.238402 GCTTACCTTGCCTGCTATAAAAGTAC 60.238 42.308 0.00 0.00 0.00 2.73
809 1172 1.260561 CACCACACAGACGTTGCTTAC 59.739 52.381 0.00 0.00 0.00 2.34
824 1190 0.310854 GGCGCCTATTTATGCACCAC 59.689 55.000 22.15 0.00 30.07 4.16
852 1218 1.845809 GCGCCCTTGTGAGTTGTGAG 61.846 60.000 0.00 0.00 0.00 3.51
853 1219 1.891919 GCGCCCTTGTGAGTTGTGA 60.892 57.895 0.00 0.00 0.00 3.58
854 1220 2.639286 GCGCCCTTGTGAGTTGTG 59.361 61.111 0.00 0.00 0.00 3.33
855 1221 2.594592 GGCGCCCTTGTGAGTTGT 60.595 61.111 18.11 0.00 0.00 3.32
856 1222 3.726517 CGGCGCCCTTGTGAGTTG 61.727 66.667 23.46 0.00 0.00 3.16
857 1223 4.250305 ACGGCGCCCTTGTGAGTT 62.250 61.111 23.46 0.00 0.00 3.01
858 1224 4.681978 GACGGCGCCCTTGTGAGT 62.682 66.667 23.46 11.22 0.00 3.41
896 1262 0.251341 AAAGATGAGGGTGGGTGTGC 60.251 55.000 0.00 0.00 0.00 4.57
897 1263 2.941415 GCTAAAGATGAGGGTGGGTGTG 60.941 54.545 0.00 0.00 0.00 3.82
898 1264 1.282157 GCTAAAGATGAGGGTGGGTGT 59.718 52.381 0.00 0.00 0.00 4.16
899 1265 1.561542 AGCTAAAGATGAGGGTGGGTG 59.438 52.381 0.00 0.00 0.00 4.61
900 1266 1.840635 GAGCTAAAGATGAGGGTGGGT 59.159 52.381 0.00 0.00 0.00 4.51
992 1364 0.387929 GTTCGCCTCCATGTATCGGA 59.612 55.000 0.00 0.00 0.00 4.55
995 1367 1.541233 CCTGGTTCGCCTCCATGTATC 60.541 57.143 0.00 0.00 38.36 2.24
996 1368 0.469917 CCTGGTTCGCCTCCATGTAT 59.530 55.000 0.00 0.00 38.36 2.29
997 1369 0.616395 TCCTGGTTCGCCTCCATGTA 60.616 55.000 0.00 0.00 38.36 2.29
1150 1525 4.010349 GCTAGCTATTTTGGTTGGTGTCT 58.990 43.478 7.70 0.00 0.00 3.41
1151 1526 4.010349 AGCTAGCTATTTTGGTTGGTGTC 58.990 43.478 17.69 0.00 0.00 3.67
1152 1527 4.034285 AGCTAGCTATTTTGGTTGGTGT 57.966 40.909 17.69 0.00 0.00 4.16
1153 1528 4.035675 GCTAGCTAGCTATTTTGGTTGGTG 59.964 45.833 33.71 9.52 45.62 4.17
1154 1529 4.200092 GCTAGCTAGCTATTTTGGTTGGT 58.800 43.478 33.71 0.00 45.62 3.67
1155 1530 4.820284 GCTAGCTAGCTATTTTGGTTGG 57.180 45.455 33.71 10.70 45.62 3.77
1206 1618 1.028330 AGAACCATGCATGTCAGCGG 61.028 55.000 24.58 11.22 37.31 5.52
1214 1626 1.815421 GCCGTCGAGAACCATGCAT 60.815 57.895 0.00 0.00 0.00 3.96
1215 1627 2.434185 GCCGTCGAGAACCATGCA 60.434 61.111 0.00 0.00 0.00 3.96
1216 1628 3.554692 CGCCGTCGAGAACCATGC 61.555 66.667 0.00 0.00 38.10 4.06
1217 1629 3.554692 GCGCCGTCGAGAACCATG 61.555 66.667 0.00 0.00 38.10 3.66
1218 1630 4.063967 TGCGCCGTCGAGAACCAT 62.064 61.111 4.18 0.00 38.10 3.55
1312 1727 3.222354 GACGGCCTTGGACACGAGT 62.222 63.158 0.00 0.00 0.00 4.18
1370 1785 0.099791 GAGAGTGAGAGGCAGCGTAC 59.900 60.000 0.00 0.00 0.00 3.67
1372 1787 1.304052 AGAGAGTGAGAGGCAGCGT 60.304 57.895 0.00 0.00 0.00 5.07
1433 1873 1.322442 GGCCAGCCAGACCATTATTC 58.678 55.000 3.12 0.00 35.81 1.75
1533 1973 4.340666 AGAGCAGGACATGTATGTGTCTAG 59.659 45.833 0.00 2.12 46.02 2.43
1534 1974 4.281657 AGAGCAGGACATGTATGTGTCTA 58.718 43.478 0.00 0.00 46.02 2.59
1535 1975 3.102972 AGAGCAGGACATGTATGTGTCT 58.897 45.455 0.00 5.22 46.02 3.41
1536 1976 3.452474 GAGAGCAGGACATGTATGTGTC 58.548 50.000 0.00 3.03 46.04 3.67
1537 1977 2.169352 GGAGAGCAGGACATGTATGTGT 59.831 50.000 0.00 0.00 41.95 3.72
1564 2004 1.850441 GCATTTCGTTCATGCAGATGC 59.150 47.619 10.15 0.00 45.50 3.91
1591 2031 9.090692 GAAGTAAAAATAATCAAGCACATGCAT 57.909 29.630 6.64 0.00 45.16 3.96
1593 2033 8.693542 AGAAGTAAAAATAATCAAGCACATGC 57.306 30.769 0.00 0.00 42.49 4.06
1710 2161 2.541120 GCGCTCATGCATGTCCCTC 61.541 63.158 25.43 10.54 39.64 4.30
1786 2237 1.207791 AGTGGCTAAGATGAGTGGGG 58.792 55.000 0.00 0.00 0.00 4.96
1787 2238 3.244353 CCATAGTGGCTAAGATGAGTGGG 60.244 52.174 0.00 0.00 0.00 4.61
1809 2260 3.000078 CACAAACACACACACGAGTAGTC 60.000 47.826 0.00 0.00 0.00 2.59
1853 2629 1.598601 TGTCGACCTTAAACGTTTGGC 59.401 47.619 23.46 8.19 0.00 4.52
1854 2630 3.495377 TCATGTCGACCTTAAACGTTTGG 59.505 43.478 23.46 18.39 0.00 3.28
1855 2631 4.025563 TGTCATGTCGACCTTAAACGTTTG 60.026 41.667 23.46 9.44 44.71 2.93
1856 2632 4.121317 TGTCATGTCGACCTTAAACGTTT 58.879 39.130 18.90 18.90 44.71 3.60
1857 2633 3.719924 TGTCATGTCGACCTTAAACGTT 58.280 40.909 14.12 0.00 44.71 3.99
1899 2679 4.768968 TCACCCGTTTACTACTAAGCTTCT 59.231 41.667 0.00 0.00 0.00 2.85
1900 2680 5.064441 TCACCCGTTTACTACTAAGCTTC 57.936 43.478 0.00 0.00 0.00 3.86
1901 2681 5.011431 ACTTCACCCGTTTACTACTAAGCTT 59.989 40.000 3.48 3.48 0.00 3.74
1902 2682 4.525874 ACTTCACCCGTTTACTACTAAGCT 59.474 41.667 0.00 0.00 0.00 3.74
1903 2683 4.814147 ACTTCACCCGTTTACTACTAAGC 58.186 43.478 0.00 0.00 0.00 3.09
1904 2684 6.685657 AGAACTTCACCCGTTTACTACTAAG 58.314 40.000 0.00 0.00 0.00 2.18
1905 2685 6.655078 AGAACTTCACCCGTTTACTACTAA 57.345 37.500 0.00 0.00 0.00 2.24
1906 2686 6.449698 CAAGAACTTCACCCGTTTACTACTA 58.550 40.000 0.00 0.00 0.00 1.82
1907 2687 5.295152 CAAGAACTTCACCCGTTTACTACT 58.705 41.667 0.00 0.00 0.00 2.57
1908 2688 4.084171 GCAAGAACTTCACCCGTTTACTAC 60.084 45.833 0.00 0.00 0.00 2.73
1909 2689 4.060205 GCAAGAACTTCACCCGTTTACTA 58.940 43.478 0.00 0.00 0.00 1.82
1910 2690 2.876550 GCAAGAACTTCACCCGTTTACT 59.123 45.455 0.00 0.00 0.00 2.24
1911 2691 2.349155 CGCAAGAACTTCACCCGTTTAC 60.349 50.000 0.00 0.00 43.02 2.01
1912 2692 1.868498 CGCAAGAACTTCACCCGTTTA 59.132 47.619 0.00 0.00 43.02 2.01
1921 2701 1.725973 GCCGCAACGCAAGAACTTC 60.726 57.895 0.00 0.00 43.62 3.01
1960 2743 2.280389 ATATCCGCCTGCACGCAG 60.280 61.111 12.17 12.17 43.26 5.18
1962 2745 3.349006 CCATATCCGCCTGCACGC 61.349 66.667 0.00 0.00 0.00 5.34
2146 2932 2.103736 GCACGAGGGCCTACGTAC 59.896 66.667 23.85 17.60 40.76 3.67
2205 2999 3.486875 GCCATTGGTTAGTTACACATCGC 60.487 47.826 4.26 0.00 0.00 4.58
2244 3038 2.183478 ATGCAACGAGACATCACCAA 57.817 45.000 0.00 0.00 0.00 3.67
2272 3066 2.738521 CCGTCCACGTTGAGCAGG 60.739 66.667 0.00 0.00 37.74 4.85
2353 3147 4.134187 ACGAAGATGTTGCGCGCG 62.134 61.111 28.44 28.44 0.00 6.86
2481 3275 2.238395 AGCTAGCCTCTTTTCCTCTTGG 59.762 50.000 12.13 0.00 0.00 3.61
2510 3304 4.385405 ACCTGCTGCTCGGTGCTC 62.385 66.667 12.25 0.00 43.37 4.26
2513 3307 4.767255 GGGACCTGCTGCTCGGTG 62.767 72.222 16.74 0.00 32.62 4.94
2515 3309 4.463879 CAGGGACCTGCTGCTCGG 62.464 72.222 5.27 4.04 37.24 4.63
2577 3387 6.978659 ACATGCATGAAGAAGCAGATTATTTG 59.021 34.615 32.75 1.05 44.94 2.32
2585 3402 6.146673 TCGATATTACATGCATGAAGAAGCAG 59.853 38.462 32.75 16.09 44.94 4.24
2586 3403 5.990996 TCGATATTACATGCATGAAGAAGCA 59.009 36.000 32.75 14.46 45.92 3.91
2587 3404 6.471976 TCGATATTACATGCATGAAGAAGC 57.528 37.500 32.75 15.96 0.00 3.86
2615 3432 5.878669 CACGGAATATTATTAGGGTTAGGGC 59.121 44.000 0.00 0.00 0.00 5.19
2705 3522 2.868839 GCGCTGTAAGGTACAACTCCAA 60.869 50.000 0.00 0.00 38.38 3.53
2730 3547 2.162754 CAACGCGATGGTACGACCC 61.163 63.158 15.93 0.00 37.50 4.46
2731 3548 0.179166 TACAACGCGATGGTACGACC 60.179 55.000 20.87 0.00 39.22 4.79
2781 3601 6.569780 TGACTGTGCACATTAATATCGTAGT 58.430 36.000 22.00 9.89 0.00 2.73
2815 3635 1.641677 GAAACGAGTGCGCTGTGTT 59.358 52.632 3.44 6.59 42.48 3.32
2834 3654 5.720261 GTACTAGGTGTACGTGGTACTAC 57.280 47.826 18.12 0.00 41.94 2.73
2870 3690 5.482686 TCTTTTGTTTTCATTTTGCCAGC 57.517 34.783 0.00 0.00 0.00 4.85
2873 3693 6.602179 GCCTATCTTTTGTTTTCATTTTGCC 58.398 36.000 0.00 0.00 0.00 4.52
2885 3705 1.084289 GGTTCGCGCCTATCTTTTGT 58.916 50.000 0.00 0.00 0.00 2.83
2986 3815 1.499368 TGCCATGATCTACCTCTGCA 58.501 50.000 0.00 0.00 0.00 4.41
3057 3886 9.679661 TTGTGTGGAATGTTGAACTATATATGT 57.320 29.630 0.00 0.00 0.00 2.29
3061 3890 8.522830 CCTTTTGTGTGGAATGTTGAACTATAT 58.477 33.333 0.00 0.00 0.00 0.86
3062 3891 7.523052 GCCTTTTGTGTGGAATGTTGAACTATA 60.523 37.037 0.00 0.00 0.00 1.31
3100 3929 0.600255 CCGGCTAAGAACTATGCCCG 60.600 60.000 0.00 0.00 42.15 6.13
3113 3942 8.381636 GGGAGTATCTAGTAATATATCCGGCTA 58.618 40.741 0.00 0.00 33.73 3.93
3114 3943 7.073981 AGGGAGTATCTAGTAATATATCCGGCT 59.926 40.741 0.00 0.00 33.73 5.52
3115 3944 7.232910 AGGGAGTATCTAGTAATATATCCGGC 58.767 42.308 0.00 0.00 33.73 6.13
3116 3945 7.884354 GGAGGGAGTATCTAGTAATATATCCGG 59.116 44.444 0.00 0.00 33.73 5.14
3117 3946 8.438373 TGGAGGGAGTATCTAGTAATATATCCG 58.562 40.741 0.00 0.00 33.73 4.18
3121 3950 8.438373 CGGATGGAGGGAGTATCTAGTAATATA 58.562 40.741 0.00 0.00 33.73 0.86
3122 3951 7.129038 TCGGATGGAGGGAGTATCTAGTAATAT 59.871 40.741 0.00 0.00 33.73 1.28
3123 3952 6.446110 TCGGATGGAGGGAGTATCTAGTAATA 59.554 42.308 0.00 0.00 33.73 0.98
3124 3953 5.253330 TCGGATGGAGGGAGTATCTAGTAAT 59.747 44.000 0.00 0.00 33.73 1.89
3125 3954 4.600547 TCGGATGGAGGGAGTATCTAGTAA 59.399 45.833 0.00 0.00 33.73 2.24
3126 3955 4.173594 TCGGATGGAGGGAGTATCTAGTA 58.826 47.826 0.00 0.00 33.73 1.82
3127 3956 2.987437 TCGGATGGAGGGAGTATCTAGT 59.013 50.000 0.00 0.00 33.73 2.57
3128 3957 3.722908 TCGGATGGAGGGAGTATCTAG 57.277 52.381 0.00 0.00 33.73 2.43
3129 3958 4.464652 TTTCGGATGGAGGGAGTATCTA 57.535 45.455 0.00 0.00 33.73 1.98
3130 3959 3.330126 TTTCGGATGGAGGGAGTATCT 57.670 47.619 0.00 0.00 33.73 1.98
3131 3960 4.625607 ATTTTCGGATGGAGGGAGTATC 57.374 45.455 0.00 0.00 0.00 2.24
3132 3961 5.155905 AGTATTTTCGGATGGAGGGAGTAT 58.844 41.667 0.00 0.00 0.00 2.12
3133 3962 4.553678 AGTATTTTCGGATGGAGGGAGTA 58.446 43.478 0.00 0.00 0.00 2.59
3134 3963 3.385115 AGTATTTTCGGATGGAGGGAGT 58.615 45.455 0.00 0.00 0.00 3.85
3135 3964 4.130118 CAAGTATTTTCGGATGGAGGGAG 58.870 47.826 0.00 0.00 0.00 4.30
3136 3965 3.521937 ACAAGTATTTTCGGATGGAGGGA 59.478 43.478 0.00 0.00 0.00 4.20
3137 3966 3.877508 GACAAGTATTTTCGGATGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
3138 3967 4.513442 TGACAAGTATTTTCGGATGGAGG 58.487 43.478 0.00 0.00 0.00 4.30
3139 3968 5.817296 TGATGACAAGTATTTTCGGATGGAG 59.183 40.000 0.00 0.00 0.00 3.86
3140 3969 5.739959 TGATGACAAGTATTTTCGGATGGA 58.260 37.500 0.00 0.00 0.00 3.41
3141 3970 6.435430 TTGATGACAAGTATTTTCGGATGG 57.565 37.500 0.00 0.00 0.00 3.51
3142 3971 8.800972 CATTTTGATGACAAGTATTTTCGGATG 58.199 33.333 0.00 0.00 37.32 3.51
3143 3972 7.975616 CCATTTTGATGACAAGTATTTTCGGAT 59.024 33.333 0.00 0.00 37.32 4.18
3144 3973 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
3145 3974 7.273381 GTCCATTTTGATGACAAGTATTTTCGG 59.727 37.037 0.00 0.00 37.32 4.30
3146 3975 7.007367 CGTCCATTTTGATGACAAGTATTTTCG 59.993 37.037 0.00 0.00 37.32 3.46
3147 3976 8.020819 TCGTCCATTTTGATGACAAGTATTTTC 58.979 33.333 0.00 0.00 37.32 2.29
3148 3977 7.881142 TCGTCCATTTTGATGACAAGTATTTT 58.119 30.769 0.00 0.00 37.32 1.82
3149 3978 7.447374 TCGTCCATTTTGATGACAAGTATTT 57.553 32.000 0.00 0.00 37.32 1.40
3150 3979 7.447374 TTCGTCCATTTTGATGACAAGTATT 57.553 32.000 0.00 0.00 37.32 1.89
3151 3980 7.447374 TTTCGTCCATTTTGATGACAAGTAT 57.553 32.000 0.00 0.00 37.32 2.12
3152 3981 6.869315 TTTCGTCCATTTTGATGACAAGTA 57.131 33.333 0.00 0.00 37.32 2.24
3153 3982 5.766150 TTTCGTCCATTTTGATGACAAGT 57.234 34.783 0.00 0.00 37.32 3.16
3154 3983 5.630680 CCTTTTCGTCCATTTTGATGACAAG 59.369 40.000 0.00 0.00 37.61 3.16
3155 3984 5.508825 CCCTTTTCGTCCATTTTGATGACAA 60.509 40.000 0.00 0.00 30.19 3.18
3156 3985 4.022416 CCCTTTTCGTCCATTTTGATGACA 60.022 41.667 0.00 0.00 30.19 3.58
3157 3986 4.217550 TCCCTTTTCGTCCATTTTGATGAC 59.782 41.667 0.00 0.00 30.19 3.06
3158 3987 4.402829 TCCCTTTTCGTCCATTTTGATGA 58.597 39.130 0.00 0.00 0.00 2.92
3159 3988 4.782019 TCCCTTTTCGTCCATTTTGATG 57.218 40.909 0.00 0.00 0.00 3.07
3160 3989 4.772100 ACATCCCTTTTCGTCCATTTTGAT 59.228 37.500 0.00 0.00 0.00 2.57
3161 3990 4.148838 ACATCCCTTTTCGTCCATTTTGA 58.851 39.130 0.00 0.00 0.00 2.69
3162 3991 4.519540 ACATCCCTTTTCGTCCATTTTG 57.480 40.909 0.00 0.00 0.00 2.44
3163 3992 6.187682 AGATACATCCCTTTTCGTCCATTTT 58.812 36.000 0.00 0.00 0.00 1.82
3164 3993 5.755849 AGATACATCCCTTTTCGTCCATTT 58.244 37.500 0.00 0.00 0.00 2.32
3165 3994 5.373812 AGATACATCCCTTTTCGTCCATT 57.626 39.130 0.00 0.00 0.00 3.16
3166 3995 5.839063 TCTAGATACATCCCTTTTCGTCCAT 59.161 40.000 0.00 0.00 0.00 3.41
3167 3996 5.205821 TCTAGATACATCCCTTTTCGTCCA 58.794 41.667 0.00 0.00 0.00 4.02
3168 3997 5.786264 TCTAGATACATCCCTTTTCGTCC 57.214 43.478 0.00 0.00 0.00 4.79
3169 3998 6.807789 AGTTCTAGATACATCCCTTTTCGTC 58.192 40.000 0.00 0.00 0.00 4.20
3170 3999 6.793505 AGTTCTAGATACATCCCTTTTCGT 57.206 37.500 0.00 0.00 0.00 3.85
3171 4000 9.595823 TTTTAGTTCTAGATACATCCCTTTTCG 57.404 33.333 0.00 0.00 0.00 3.46
3191 4020 9.845214 AGGGGATGTATCTAGATGTATTTTAGT 57.155 33.333 15.79 0.00 0.00 2.24
3199 4028 9.170890 TGAATAAAAGGGGATGTATCTAGATGT 57.829 33.333 15.79 1.25 0.00 3.06
3205 4034 9.713684 TCAAAATGAATAAAAGGGGATGTATCT 57.286 29.630 0.00 0.00 0.00 1.98
3208 4037 9.486123 TCATCAAAATGAATAAAAGGGGATGTA 57.514 29.630 0.00 0.00 38.97 2.29
3209 4038 8.260114 GTCATCAAAATGAATAAAAGGGGATGT 58.740 33.333 0.00 0.00 43.42 3.06
3210 4039 8.259411 TGTCATCAAAATGAATAAAAGGGGATG 58.741 33.333 0.00 0.00 43.42 3.51
3211 4040 8.378115 TGTCATCAAAATGAATAAAAGGGGAT 57.622 30.769 0.00 0.00 43.42 3.85
3212 4041 7.789202 TGTCATCAAAATGAATAAAAGGGGA 57.211 32.000 0.00 0.00 43.42 4.81
3213 4042 8.096414 ACTTGTCATCAAAATGAATAAAAGGGG 58.904 33.333 0.00 0.00 43.42 4.79
3221 4050 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
3222 4051 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
3223 4052 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
3224 4053 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
3225 4054 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
3226 4055 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
3227 4056 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
3228 4057 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
3229 4058 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
3230 4059 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
3231 4060 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
3232 4061 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
3233 4062 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3234 4063 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3235 4064 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3236 4065 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3237 4066 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3238 4067 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3239 4068 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3240 4069 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3241 4070 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
3242 4071 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
3243 4072 2.141011 TTGTACTCCCTCCGTCCGGA 62.141 60.000 0.00 0.00 42.90 5.14
3244 4073 1.679977 TTGTACTCCCTCCGTCCGG 60.680 63.158 0.00 0.00 0.00 5.14
3245 4074 1.246056 TGTTGTACTCCCTCCGTCCG 61.246 60.000 0.00 0.00 0.00 4.79
3246 4075 1.192428 ATGTTGTACTCCCTCCGTCC 58.808 55.000 0.00 0.00 0.00 4.79
3247 4076 2.361438 CCTATGTTGTACTCCCTCCGTC 59.639 54.545 0.00 0.00 0.00 4.79
3248 4077 2.024655 TCCTATGTTGTACTCCCTCCGT 60.025 50.000 0.00 0.00 0.00 4.69
3249 4078 2.361438 GTCCTATGTTGTACTCCCTCCG 59.639 54.545 0.00 0.00 0.00 4.63
3250 4079 3.132467 GTGTCCTATGTTGTACTCCCTCC 59.868 52.174 0.00 0.00 0.00 4.30
3251 4080 3.767673 TGTGTCCTATGTTGTACTCCCTC 59.232 47.826 0.00 0.00 0.00 4.30
3252 4081 3.769844 CTGTGTCCTATGTTGTACTCCCT 59.230 47.826 0.00 0.00 0.00 4.20
3253 4082 3.514309 ACTGTGTCCTATGTTGTACTCCC 59.486 47.826 0.00 0.00 0.00 4.30
3254 4083 4.803098 ACTGTGTCCTATGTTGTACTCC 57.197 45.455 0.00 0.00 0.00 3.85
3255 4084 5.779922 TGAACTGTGTCCTATGTTGTACTC 58.220 41.667 0.00 0.00 0.00 2.59
3256 4085 5.801531 TGAACTGTGTCCTATGTTGTACT 57.198 39.130 0.00 0.00 0.00 2.73
3257 4086 6.090898 GTGATGAACTGTGTCCTATGTTGTAC 59.909 42.308 0.00 0.00 0.00 2.90
3258 4087 6.163476 GTGATGAACTGTGTCCTATGTTGTA 58.837 40.000 0.00 0.00 0.00 2.41
3259 4088 4.997395 GTGATGAACTGTGTCCTATGTTGT 59.003 41.667 0.00 0.00 0.00 3.32
3260 4089 4.996758 TGTGATGAACTGTGTCCTATGTTG 59.003 41.667 0.00 0.00 0.00 3.33
3261 4090 4.997395 GTGTGATGAACTGTGTCCTATGTT 59.003 41.667 0.00 0.00 0.00 2.71
3262 4091 4.563580 GGTGTGATGAACTGTGTCCTATGT 60.564 45.833 0.00 0.00 0.00 2.29
3263 4092 3.935203 GGTGTGATGAACTGTGTCCTATG 59.065 47.826 0.00 0.00 0.00 2.23
3264 4093 3.055094 GGGTGTGATGAACTGTGTCCTAT 60.055 47.826 0.00 0.00 0.00 2.57
3273 4102 4.437682 TCTCTTTTGGGTGTGATGAACT 57.562 40.909 0.00 0.00 0.00 3.01
3300 4129 9.476928 AGTTTGTATCTAGTAATATATCCGGCT 57.523 33.333 0.00 0.00 0.00 5.52
3324 4153 9.435570 TCACCTCCTCTAGCTAATTAAATTAGT 57.564 33.333 0.00 0.00 43.22 2.24
3327 4156 7.569111 TCCTCACCTCCTCTAGCTAATTAAATT 59.431 37.037 0.00 0.00 0.00 1.82
3328 4157 7.076446 TCCTCACCTCCTCTAGCTAATTAAAT 58.924 38.462 0.00 0.00 0.00 1.40
3329 4158 6.441222 TCCTCACCTCCTCTAGCTAATTAAA 58.559 40.000 0.00 0.00 0.00 1.52
3332 4161 4.544564 TCCTCACCTCCTCTAGCTAATT 57.455 45.455 0.00 0.00 0.00 1.40
3333 4162 4.415596 CATCCTCACCTCCTCTAGCTAAT 58.584 47.826 0.00 0.00 0.00 1.73
3354 4434 4.380444 GGCTAAGAAATGGTGATTTTCGCA 60.380 41.667 0.00 0.00 37.98 5.10
3358 4438 3.119137 GCCGGCTAAGAAATGGTGATTTT 60.119 43.478 22.15 0.00 31.58 1.82
3380 4460 0.181350 GTGACATCAAGGCTAGGGGG 59.819 60.000 0.00 0.00 0.00 5.40
3384 4464 0.824109 TCCGGTGACATCAAGGCTAG 59.176 55.000 0.00 0.00 0.00 3.42
3386 4466 1.599047 CTCCGGTGACATCAAGGCT 59.401 57.895 0.00 0.00 0.00 4.58
3447 4527 2.370718 AGGATGGCGATGATCCTCC 58.629 57.895 4.84 0.00 45.70 4.30
3450 4530 1.517242 GACAAGGATGGCGATGATCC 58.483 55.000 0.00 0.00 39.94 3.36
3451 4531 1.517242 GGACAAGGATGGCGATGATC 58.483 55.000 0.00 0.00 34.32 2.92
3452 4532 0.250038 CGGACAAGGATGGCGATGAT 60.250 55.000 0.00 0.00 34.32 2.45
3455 4535 1.153369 CACGGACAAGGATGGCGAT 60.153 57.895 0.00 0.00 34.32 4.58
3457 4537 3.499737 GCACGGACAAGGATGGCG 61.500 66.667 0.00 0.00 34.32 5.69
3458 4538 2.045926 AGCACGGACAAGGATGGC 60.046 61.111 0.00 0.00 0.00 4.40
3459 4539 1.746615 CCAGCACGGACAAGGATGG 60.747 63.158 0.00 0.00 36.56 3.51
3460 4540 1.003355 ACCAGCACGGACAAGGATG 60.003 57.895 0.00 0.00 38.63 3.51
3461 4541 1.003355 CACCAGCACGGACAAGGAT 60.003 57.895 0.00 0.00 38.63 3.24
3462 4542 2.425592 CACCAGCACGGACAAGGA 59.574 61.111 0.00 0.00 38.63 3.36
3463 4543 2.669569 CCACCAGCACGGACAAGG 60.670 66.667 0.00 0.00 38.63 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.