Multiple sequence alignment - TraesCS4B01G034900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G034900 chr4B 100.000 2927 0 0 1 2927 25499991 25497065 0.000000e+00 5406.0
1 TraesCS4B01G034900 chr4B 95.982 224 8 1 229 451 375388646 375388423 2.140000e-96 363.0
2 TraesCS4B01G034900 chr4B 93.913 230 14 0 1 230 375388966 375388737 6.000000e-92 348.0
3 TraesCS4B01G034900 chr4A 93.364 859 41 8 633 1476 585656346 585657203 0.000000e+00 1256.0
4 TraesCS4B01G034900 chr4A 93.412 425 28 0 1509 1933 585657201 585657625 5.320000e-177 630.0
5 TraesCS4B01G034900 chr2A 94.261 819 40 4 664 1476 195775052 195775869 0.000000e+00 1245.0
6 TraesCS4B01G034900 chr2A 90.328 548 35 11 1509 2055 195775867 195776397 0.000000e+00 702.0
7 TraesCS4B01G034900 chr2A 82.160 611 86 20 2104 2705 195781902 195782498 1.210000e-138 503.0
8 TraesCS4B01G034900 chr2A 94.444 108 6 0 2820 2927 195782557 195782664 1.800000e-37 167.0
9 TraesCS4B01G034900 chr2A 95.890 73 3 0 2734 2806 195782496 195782568 5.120000e-23 119.0
10 TraesCS4B01G034900 chr6A 89.320 206 22 0 1122 1327 143008390 143008595 2.890000e-65 259.0
11 TraesCS4B01G034900 chr7A 89.683 126 13 0 1 126 368774289 368774164 8.390000e-36 161.0
12 TraesCS4B01G034900 chr1B 97.500 40 1 0 2374 2413 268604414 268604453 5.230000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G034900 chr4B 25497065 25499991 2926 True 5406.0 5406 100.000000 1 2927 1 chr4B.!!$R1 2926
1 TraesCS4B01G034900 chr4B 375388423 375388966 543 True 355.5 363 94.947500 1 451 2 chr4B.!!$R2 450
2 TraesCS4B01G034900 chr4A 585656346 585657625 1279 False 943.0 1256 93.388000 633 1933 2 chr4A.!!$F1 1300
3 TraesCS4B01G034900 chr2A 195775052 195776397 1345 False 973.5 1245 92.294500 664 2055 2 chr2A.!!$F1 1391
4 TraesCS4B01G034900 chr2A 195781902 195782664 762 False 263.0 503 90.831333 2104 2927 3 chr2A.!!$F2 823

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
525 619 0.110056 CACTTGCTGACATGGCGTTC 60.11 55.0 0.0 0.0 0.0 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2046 2154 0.036858 TTGCACGGACGGATCATTGA 60.037 50.0 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.539274 CGCACCAACCAAACAAAGAATG 59.461 45.455 0.00 0.00 0.00 2.67
47 48 6.760770 CACCAACCAAACAAAGAATGTATTGT 59.239 34.615 0.00 0.00 42.99 2.71
67 68 9.562583 GTATTGTGTAAAATTTATCGGAAGCAA 57.437 29.630 0.00 0.00 0.00 3.91
68 69 7.861176 TTGTGTAAAATTTATCGGAAGCAAC 57.139 32.000 0.00 0.00 0.00 4.17
87 88 3.334272 ACGCTTTCTGTTACAGCAAAC 57.666 42.857 7.61 0.00 32.71 2.93
113 114 1.073548 GTTACCTGGGCCGAACCAA 59.926 57.895 0.00 0.00 40.68 3.67
128 129 2.132740 ACCAAACGCGTCGTAAGTAA 57.867 45.000 14.44 0.00 39.99 2.24
155 156 7.035612 GGAAACCACATTCAGTTTGATATTCC 58.964 38.462 0.00 0.00 36.36 3.01
260 353 9.490379 TCAACACTCTTCTTAATTAGTTTCCTC 57.510 33.333 0.00 0.00 0.00 3.71
282 375 6.706716 CCTCCGGTTCCTTTAGATAGATTTTC 59.293 42.308 0.00 0.00 0.00 2.29
364 457 3.106672 CTCTGCTACTTAAAGCGTACGG 58.893 50.000 18.39 1.02 45.85 4.02
368 461 3.429543 TGCTACTTAAAGCGTACGGTTTG 59.570 43.478 40.44 30.90 45.85 2.93
445 539 1.740296 GCAACGCACGGGTAGTCAT 60.740 57.895 0.00 0.00 0.00 3.06
446 540 1.693083 GCAACGCACGGGTAGTCATC 61.693 60.000 0.00 0.00 0.00 2.92
451 545 1.268589 CGCACGGGTAGTCATCTAGTG 60.269 57.143 0.00 0.00 0.00 2.74
452 546 2.022195 GCACGGGTAGTCATCTAGTGA 58.978 52.381 0.00 0.00 0.00 3.41
453 547 2.033550 GCACGGGTAGTCATCTAGTGAG 59.966 54.545 0.00 0.00 37.56 3.51
454 548 3.542648 CACGGGTAGTCATCTAGTGAGA 58.457 50.000 0.00 0.00 37.56 3.27
455 549 3.945921 CACGGGTAGTCATCTAGTGAGAA 59.054 47.826 0.00 0.00 37.56 2.87
456 550 4.398358 CACGGGTAGTCATCTAGTGAGAAA 59.602 45.833 0.00 0.00 37.56 2.52
457 551 5.067936 CACGGGTAGTCATCTAGTGAGAAAT 59.932 44.000 0.00 0.00 37.56 2.17
458 552 6.262496 CACGGGTAGTCATCTAGTGAGAAATA 59.738 42.308 0.00 0.00 37.56 1.40
459 553 6.832384 ACGGGTAGTCATCTAGTGAGAAATAA 59.168 38.462 0.00 0.00 37.56 1.40
460 554 7.341256 ACGGGTAGTCATCTAGTGAGAAATAAA 59.659 37.037 0.00 0.00 37.56 1.40
461 555 8.361139 CGGGTAGTCATCTAGTGAGAAATAAAT 58.639 37.037 0.00 0.00 37.56 1.40
462 556 9.482627 GGGTAGTCATCTAGTGAGAAATAAATG 57.517 37.037 0.00 0.00 37.56 2.32
466 560 9.950496 AGTCATCTAGTGAGAAATAAATGTTGT 57.050 29.630 0.00 0.00 37.56 3.32
469 563 9.994432 CATCTAGTGAGAAATAAATGTTGTTCC 57.006 33.333 0.00 0.00 34.61 3.62
470 564 9.739276 ATCTAGTGAGAAATAAATGTTGTTCCA 57.261 29.630 0.00 0.00 34.61 3.53
471 565 9.739276 TCTAGTGAGAAATAAATGTTGTTCCAT 57.261 29.630 0.00 0.00 0.00 3.41
472 566 9.994432 CTAGTGAGAAATAAATGTTGTTCCATC 57.006 33.333 0.00 0.00 0.00 3.51
473 567 7.530010 AGTGAGAAATAAATGTTGTTCCATCG 58.470 34.615 0.00 0.00 0.00 3.84
474 568 6.747280 GTGAGAAATAAATGTTGTTCCATCGG 59.253 38.462 0.00 0.00 0.00 4.18
475 569 6.127758 TGAGAAATAAATGTTGTTCCATCGGG 60.128 38.462 0.00 0.00 0.00 5.14
476 570 5.127031 AGAAATAAATGTTGTTCCATCGGGG 59.873 40.000 0.00 0.00 38.37 5.73
477 571 1.555967 AAATGTTGTTCCATCGGGGG 58.444 50.000 0.00 0.00 37.22 5.40
510 604 6.937436 AAAAAGAACGAGAATGTACCACTT 57.063 33.333 0.00 0.00 0.00 3.16
511 605 5.924475 AAAGAACGAGAATGTACCACTTG 57.076 39.130 0.00 0.00 0.00 3.16
512 606 3.326747 AGAACGAGAATGTACCACTTGC 58.673 45.455 0.00 0.00 0.00 4.01
513 607 3.006967 AGAACGAGAATGTACCACTTGCT 59.993 43.478 0.00 0.00 0.00 3.91
514 608 2.688507 ACGAGAATGTACCACTTGCTG 58.311 47.619 0.00 0.00 0.00 4.41
515 609 2.299013 ACGAGAATGTACCACTTGCTGA 59.701 45.455 0.00 0.00 0.00 4.26
516 610 2.668457 CGAGAATGTACCACTTGCTGAC 59.332 50.000 0.00 0.00 0.00 3.51
517 611 3.664107 GAGAATGTACCACTTGCTGACA 58.336 45.455 0.00 0.00 0.00 3.58
518 612 4.256920 GAGAATGTACCACTTGCTGACAT 58.743 43.478 0.00 0.00 32.18 3.06
519 613 4.005650 AGAATGTACCACTTGCTGACATG 58.994 43.478 0.00 0.00 31.29 3.21
520 614 2.183478 TGTACCACTTGCTGACATGG 57.817 50.000 0.00 0.00 38.26 3.66
521 615 0.804989 GTACCACTTGCTGACATGGC 59.195 55.000 0.00 0.00 35.49 4.40
522 616 0.673333 TACCACTTGCTGACATGGCG 60.673 55.000 0.00 0.00 35.49 5.69
523 617 1.968017 CCACTTGCTGACATGGCGT 60.968 57.895 0.00 0.00 0.00 5.68
524 618 1.518056 CCACTTGCTGACATGGCGTT 61.518 55.000 0.00 0.00 0.00 4.84
525 619 0.110056 CACTTGCTGACATGGCGTTC 60.110 55.000 0.00 0.00 0.00 3.95
526 620 1.133253 CTTGCTGACATGGCGTTCG 59.867 57.895 0.00 0.00 0.00 3.95
527 621 1.291184 CTTGCTGACATGGCGTTCGA 61.291 55.000 0.00 0.00 0.00 3.71
528 622 0.673333 TTGCTGACATGGCGTTCGAT 60.673 50.000 0.00 0.00 0.00 3.59
529 623 1.083806 TGCTGACATGGCGTTCGATC 61.084 55.000 0.00 0.00 0.00 3.69
530 624 0.807667 GCTGACATGGCGTTCGATCT 60.808 55.000 0.00 0.00 0.00 2.75
531 625 0.926155 CTGACATGGCGTTCGATCTG 59.074 55.000 0.00 0.00 0.00 2.90
532 626 0.460109 TGACATGGCGTTCGATCTGG 60.460 55.000 0.00 0.00 0.00 3.86
533 627 1.766143 GACATGGCGTTCGATCTGGC 61.766 60.000 0.00 0.00 0.00 4.85
534 628 1.815003 CATGGCGTTCGATCTGGCA 60.815 57.895 13.66 13.66 42.64 4.92
535 629 1.078497 ATGGCGTTCGATCTGGCAA 60.078 52.632 14.71 0.00 41.73 4.52
536 630 1.369091 ATGGCGTTCGATCTGGCAAC 61.369 55.000 14.71 0.00 41.73 4.17
537 631 1.741770 GGCGTTCGATCTGGCAACT 60.742 57.895 0.00 0.00 37.61 3.16
538 632 1.421485 GCGTTCGATCTGGCAACTG 59.579 57.895 0.00 0.00 37.61 3.16
547 641 1.527034 TCTGGCAACTGATTGAGTGC 58.473 50.000 0.00 0.00 39.92 4.40
548 642 1.072806 TCTGGCAACTGATTGAGTGCT 59.927 47.619 0.00 0.00 39.92 4.40
549 643 1.884579 CTGGCAACTGATTGAGTGCTT 59.115 47.619 0.00 0.00 38.15 3.91
550 644 2.295349 CTGGCAACTGATTGAGTGCTTT 59.705 45.455 0.00 0.00 38.15 3.51
551 645 2.034939 TGGCAACTGATTGAGTGCTTTG 59.965 45.455 0.00 0.00 38.15 2.77
552 646 2.035066 GGCAACTGATTGAGTGCTTTGT 59.965 45.455 0.00 0.00 38.15 2.83
553 647 3.253188 GGCAACTGATTGAGTGCTTTGTA 59.747 43.478 0.00 0.00 38.15 2.41
554 648 4.082571 GGCAACTGATTGAGTGCTTTGTAT 60.083 41.667 0.00 0.00 38.15 2.29
555 649 5.091431 GCAACTGATTGAGTGCTTTGTATC 58.909 41.667 0.00 0.00 38.15 2.24
556 650 5.335113 GCAACTGATTGAGTGCTTTGTATCA 60.335 40.000 0.00 0.00 38.15 2.15
557 651 6.671190 CAACTGATTGAGTGCTTTGTATCAA 58.329 36.000 0.00 0.00 38.15 2.57
558 652 7.310664 CAACTGATTGAGTGCTTTGTATCAAT 58.689 34.615 0.00 0.00 43.26 2.57
563 657 6.882610 TTGAGTGCTTTGTATCAATCTGTT 57.117 33.333 0.00 0.00 0.00 3.16
564 658 6.245115 TGAGTGCTTTGTATCAATCTGTTG 57.755 37.500 0.00 0.00 36.65 3.33
565 659 5.051891 AGTGCTTTGTATCAATCTGTTGC 57.948 39.130 0.00 0.00 35.26 4.17
566 660 4.082571 AGTGCTTTGTATCAATCTGTTGCC 60.083 41.667 0.00 0.00 35.26 4.52
567 661 3.825585 TGCTTTGTATCAATCTGTTGCCA 59.174 39.130 0.00 0.00 35.26 4.92
568 662 4.168760 GCTTTGTATCAATCTGTTGCCAC 58.831 43.478 0.00 0.00 35.26 5.01
569 663 4.321156 GCTTTGTATCAATCTGTTGCCACA 60.321 41.667 0.00 0.00 35.26 4.17
570 664 5.622914 GCTTTGTATCAATCTGTTGCCACAT 60.623 40.000 0.00 0.00 35.26 3.21
571 665 5.565592 TTGTATCAATCTGTTGCCACATC 57.434 39.130 0.00 0.00 35.26 3.06
572 666 4.847198 TGTATCAATCTGTTGCCACATCT 58.153 39.130 0.00 0.00 35.26 2.90
573 667 5.255687 TGTATCAATCTGTTGCCACATCTT 58.744 37.500 0.00 0.00 35.26 2.40
574 668 4.713824 ATCAATCTGTTGCCACATCTTG 57.286 40.909 0.00 0.00 35.26 3.02
575 669 3.753815 TCAATCTGTTGCCACATCTTGA 58.246 40.909 9.78 9.78 33.78 3.02
576 670 3.754850 TCAATCTGTTGCCACATCTTGAG 59.245 43.478 9.78 0.00 32.38 3.02
577 671 2.936919 TCTGTTGCCACATCTTGAGT 57.063 45.000 0.00 0.00 30.39 3.41
578 672 3.213206 TCTGTTGCCACATCTTGAGTT 57.787 42.857 0.00 0.00 30.39 3.01
579 673 4.350368 TCTGTTGCCACATCTTGAGTTA 57.650 40.909 0.00 0.00 30.39 2.24
580 674 4.910195 TCTGTTGCCACATCTTGAGTTAT 58.090 39.130 0.00 0.00 30.39 1.89
581 675 4.696877 TCTGTTGCCACATCTTGAGTTATG 59.303 41.667 0.00 0.00 30.39 1.90
582 676 4.397420 TGTTGCCACATCTTGAGTTATGT 58.603 39.130 0.00 0.00 36.78 2.29
589 683 5.745312 ACATCTTGAGTTATGTGACCAGA 57.255 39.130 0.00 0.00 35.06 3.86
590 684 6.305272 ACATCTTGAGTTATGTGACCAGAT 57.695 37.500 0.00 0.00 35.06 2.90
591 685 6.715280 ACATCTTGAGTTATGTGACCAGATT 58.285 36.000 0.00 0.00 35.06 2.40
592 686 7.170965 ACATCTTGAGTTATGTGACCAGATTT 58.829 34.615 0.00 0.00 35.06 2.17
593 687 7.335422 ACATCTTGAGTTATGTGACCAGATTTC 59.665 37.037 0.00 0.00 35.06 2.17
594 688 7.009179 TCTTGAGTTATGTGACCAGATTTCT 57.991 36.000 0.00 0.00 0.00 2.52
595 689 8.134202 TCTTGAGTTATGTGACCAGATTTCTA 57.866 34.615 0.00 0.00 0.00 2.10
596 690 8.253810 TCTTGAGTTATGTGACCAGATTTCTAG 58.746 37.037 0.00 0.00 0.00 2.43
597 691 7.482169 TGAGTTATGTGACCAGATTTCTAGT 57.518 36.000 0.00 0.00 0.00 2.57
598 692 7.907389 TGAGTTATGTGACCAGATTTCTAGTT 58.093 34.615 0.00 0.00 0.00 2.24
599 693 8.375506 TGAGTTATGTGACCAGATTTCTAGTTT 58.624 33.333 0.00 0.00 0.00 2.66
600 694 9.220767 GAGTTATGTGACCAGATTTCTAGTTTT 57.779 33.333 0.00 0.00 0.00 2.43
601 695 9.574516 AGTTATGTGACCAGATTTCTAGTTTTT 57.425 29.630 0.00 0.00 0.00 1.94
729 823 6.073003 GGACTATGCACTTTTGGTAGCATATC 60.073 42.308 6.44 6.73 40.46 1.63
736 830 5.643348 CACTTTTGGTAGCATATCTCACACA 59.357 40.000 0.00 0.00 0.00 3.72
845 940 7.102993 TGAGTGATGATGGAGATTTCGTTAAA 58.897 34.615 0.00 0.00 0.00 1.52
851 946 5.471797 TGATGGAGATTTCGTTAAAAGTGCA 59.528 36.000 0.00 0.00 0.00 4.57
856 951 7.009723 TGGAGATTTCGTTAAAAGTGCAAAAAC 59.990 33.333 0.00 0.00 0.00 2.43
873 968 7.799914 GTGCAAAAACATGGAAATTCTTGATTC 59.200 33.333 0.00 0.00 0.00 2.52
911 1009 5.693104 GCCATAAACAATACATGCAAGATGG 59.307 40.000 0.00 0.00 34.13 3.51
952 1054 1.016130 CGAGAGGCAGATGCGTTGTT 61.016 55.000 1.08 0.00 43.26 2.83
957 1059 1.797537 GCAGATGCGTTGTTTCGGC 60.798 57.895 0.00 0.00 0.00 5.54
984 1086 7.688918 AAGAATCCCTTCTCTATTCATCAGT 57.311 36.000 0.00 0.00 40.93 3.41
985 1087 7.301868 AGAATCCCTTCTCTATTCATCAGTC 57.698 40.000 0.00 0.00 37.09 3.51
986 1088 6.843333 AGAATCCCTTCTCTATTCATCAGTCA 59.157 38.462 0.00 0.00 37.09 3.41
987 1089 6.669125 ATCCCTTCTCTATTCATCAGTCAG 57.331 41.667 0.00 0.00 0.00 3.51
988 1090 5.770919 TCCCTTCTCTATTCATCAGTCAGA 58.229 41.667 0.00 0.00 0.00 3.27
989 1091 6.380414 TCCCTTCTCTATTCATCAGTCAGAT 58.620 40.000 0.00 0.00 37.48 2.90
1012 1120 9.601217 AGATATAAATTAACATGTCGATAGCCC 57.399 33.333 0.00 0.00 0.00 5.19
1014 1122 7.907214 ATAAATTAACATGTCGATAGCCCTC 57.093 36.000 0.00 0.00 0.00 4.30
1020 1128 1.621992 TGTCGATAGCCCTCATCCTC 58.378 55.000 0.00 0.00 0.00 3.71
1053 1161 1.532604 TTGGTGTCGATGGCGTCTCT 61.533 55.000 5.00 0.00 38.98 3.10
1063 1171 1.090625 TGGCGTCTCTAGTCTCTCGC 61.091 60.000 0.00 0.00 42.32 5.03
1070 1178 2.045242 TAGTCTCTCGCCCGCTGT 60.045 61.111 0.00 0.00 0.00 4.40
1155 1263 2.597217 CTTGGCTGGGGCGTCAAA 60.597 61.111 0.00 0.00 39.81 2.69
1260 1368 2.477176 CCTCTCCGGCACTCTCTCG 61.477 68.421 0.00 0.00 0.00 4.04
1284 1392 2.435586 GACCTCGTCGACCTCGGA 60.436 66.667 10.58 0.00 40.29 4.55
1302 1410 1.240256 GATACCTCACGGAGCTCGAT 58.760 55.000 7.83 0.00 42.43 3.59
1320 1428 0.107945 ATCTCAGCTTCAACCGCCTC 60.108 55.000 0.00 0.00 0.00 4.70
1368 1476 1.613520 CCTCTCACCTACCTGACGACA 60.614 57.143 0.00 0.00 0.00 4.35
1397 1505 4.080356 CCTACAGTCCAATTCCTTCATGGA 60.080 45.833 0.00 0.00 44.51 3.41
1475 1583 3.203059 ACAACTGGGTTATAATGGGGGA 58.797 45.455 0.00 0.00 0.00 4.81
1476 1584 3.053170 ACAACTGGGTTATAATGGGGGAC 60.053 47.826 0.00 0.00 0.00 4.46
1477 1585 2.866515 ACTGGGTTATAATGGGGGACA 58.133 47.619 0.00 0.00 0.00 4.02
1478 1586 3.413075 ACTGGGTTATAATGGGGGACAT 58.587 45.455 0.00 0.00 43.07 3.06
1479 1587 3.397955 ACTGGGTTATAATGGGGGACATC 59.602 47.826 0.00 0.00 39.40 3.06
1480 1588 3.397618 CTGGGTTATAATGGGGGACATCA 59.602 47.826 0.00 0.00 39.40 3.07
1481 1589 3.139397 TGGGTTATAATGGGGGACATCAC 59.861 47.826 0.00 0.00 39.40 3.06
1482 1590 3.408634 GGTTATAATGGGGGACATCACG 58.591 50.000 0.00 0.00 39.40 4.35
1483 1591 3.408634 GTTATAATGGGGGACATCACGG 58.591 50.000 0.00 0.00 39.40 4.94
1484 1592 1.814429 ATAATGGGGGACATCACGGA 58.186 50.000 0.00 0.00 39.40 4.69
1485 1593 0.834612 TAATGGGGGACATCACGGAC 59.165 55.000 0.00 0.00 39.40 4.79
1486 1594 2.252072 AATGGGGGACATCACGGACG 62.252 60.000 0.00 0.00 39.40 4.79
1487 1595 3.387947 GGGGGACATCACGGACGT 61.388 66.667 0.00 0.00 0.00 4.34
1488 1596 2.125673 GGGGACATCACGGACGTG 60.126 66.667 17.97 17.97 46.64 4.49
1489 1597 2.813908 GGGACATCACGGACGTGC 60.814 66.667 19.10 0.00 45.04 5.34
1490 1598 2.813908 GGACATCACGGACGTGCC 60.814 66.667 19.10 11.07 45.04 5.01
1491 1599 2.813908 GACATCACGGACGTGCCC 60.814 66.667 19.10 5.19 45.04 5.36
1492 1600 4.388499 ACATCACGGACGTGCCCC 62.388 66.667 19.10 0.00 45.04 5.80
1551 1659 1.302832 CATCTATGGCCGCTTCCCC 60.303 63.158 0.00 0.00 0.00 4.81
1583 1691 0.759060 AACACCACCCTTTTCCCTGC 60.759 55.000 0.00 0.00 0.00 4.85
1587 1695 1.304464 CACCCTTTTCCCTGCCCTC 60.304 63.158 0.00 0.00 0.00 4.30
1623 1731 3.030291 AGCGAGGAATGATCTCAAGAGT 58.970 45.455 0.00 0.00 0.00 3.24
1635 1743 1.194781 TCAAGAGTGGACTGCCCTCC 61.195 60.000 0.00 0.00 34.10 4.30
1650 1758 0.543749 CCTCCTCCTTCGCCAAGAAT 59.456 55.000 0.00 0.00 38.34 2.40
1695 1803 1.958205 CAGGCAGCGGGATTCGATC 60.958 63.158 0.00 0.00 42.43 3.69
1729 1837 7.148086 GCATGTACAATGGGTTTCTAGATTTCA 60.148 37.037 0.00 0.00 0.00 2.69
1767 1875 2.885861 GTCGAGATCCACGTGGCT 59.114 61.111 30.25 21.62 34.44 4.75
1788 1896 2.203209 GATCAATTCCGCGGCCCT 60.203 61.111 23.51 3.82 0.00 5.19
1803 1911 2.716017 CCCTCTGCTGGACGTCTCC 61.716 68.421 16.46 0.00 37.04 3.71
1805 1913 3.691744 CTCTGCTGGACGTCTCCGC 62.692 68.421 16.46 15.18 39.88 5.54
1855 1963 0.315869 CGACAACAACTTGTGCGGTC 60.316 55.000 0.00 3.84 40.93 4.79
1856 1964 0.028902 GACAACAACTTGTGCGGTCC 59.971 55.000 0.00 0.00 40.93 4.46
1872 1980 0.321996 GTCCGCTCAAGTTTCCTCCT 59.678 55.000 0.00 0.00 0.00 3.69
1911 2019 2.706834 CGGAAACCCCCAAATCGGC 61.707 63.158 0.00 0.00 0.00 5.54
1933 2041 1.148027 AGGACTGCCCATAGCTAGCTA 59.852 52.381 26.09 26.09 44.23 3.32
1934 2042 1.548269 GGACTGCCCATAGCTAGCTAG 59.452 57.143 27.42 16.84 44.23 3.42
1937 2045 1.974236 CTGCCCATAGCTAGCTAGGTT 59.026 52.381 28.98 14.74 44.23 3.50
1938 2046 2.370189 CTGCCCATAGCTAGCTAGGTTT 59.630 50.000 28.98 19.24 44.23 3.27
1939 2047 2.368875 TGCCCATAGCTAGCTAGGTTTC 59.631 50.000 28.98 19.22 44.23 2.78
1940 2048 2.368875 GCCCATAGCTAGCTAGGTTTCA 59.631 50.000 28.98 13.18 38.99 2.69
1941 2049 3.008485 GCCCATAGCTAGCTAGGTTTCAT 59.992 47.826 28.98 14.87 38.99 2.57
1942 2050 4.826556 CCCATAGCTAGCTAGGTTTCATC 58.173 47.826 28.98 7.43 35.39 2.92
1943 2051 4.284490 CCCATAGCTAGCTAGGTTTCATCA 59.716 45.833 28.98 11.71 35.39 3.07
1944 2052 5.046014 CCCATAGCTAGCTAGGTTTCATCAT 60.046 44.000 28.98 13.47 35.39 2.45
1945 2053 6.471146 CCATAGCTAGCTAGGTTTCATCATT 58.529 40.000 28.98 7.79 35.39 2.57
1946 2054 7.310671 CCCATAGCTAGCTAGGTTTCATCATTA 60.311 40.741 28.98 9.54 35.39 1.90
1947 2055 8.263640 CCATAGCTAGCTAGGTTTCATCATTAT 58.736 37.037 28.98 11.39 35.39 1.28
1948 2056 9.664332 CATAGCTAGCTAGGTTTCATCATTATT 57.336 33.333 28.98 4.25 35.39 1.40
1950 2058 8.388484 AGCTAGCTAGGTTTCATCATTATTTG 57.612 34.615 17.69 0.00 0.00 2.32
1956 2064 5.640732 AGGTTTCATCATTATTTGTGCGTC 58.359 37.500 0.00 0.00 0.00 5.19
1958 2066 3.317744 TCATCATTATTTGTGCGTCGC 57.682 42.857 11.10 11.10 0.00 5.19
1974 2082 2.028643 CGTCGCCCAAGTTTTTGTTTTG 59.971 45.455 0.00 0.00 32.21 2.44
1982 2090 7.636745 CGCCCAAGTTTTTGTTTTGTTAAATAC 59.363 33.333 0.00 0.00 32.21 1.89
2044 2152 6.179504 AGTTGATACGAGTATATACTGCCG 57.820 41.667 20.13 18.73 36.50 5.69
2045 2153 5.936372 AGTTGATACGAGTATATACTGCCGA 59.064 40.000 23.37 11.99 36.50 5.54
2046 2154 6.598457 AGTTGATACGAGTATATACTGCCGAT 59.402 38.462 23.37 14.94 36.50 4.18
2047 2155 6.600246 TGATACGAGTATATACTGCCGATC 57.400 41.667 23.37 20.02 36.50 3.69
2048 2156 6.110707 TGATACGAGTATATACTGCCGATCA 58.889 40.000 23.37 21.50 36.50 2.92
2049 2157 6.596497 TGATACGAGTATATACTGCCGATCAA 59.404 38.462 23.37 10.88 36.50 2.57
2050 2158 5.899120 ACGAGTATATACTGCCGATCAAT 57.101 39.130 23.37 5.13 36.50 2.57
2051 2159 5.641709 ACGAGTATATACTGCCGATCAATG 58.358 41.667 23.37 5.07 36.50 2.82
2052 2160 5.414765 ACGAGTATATACTGCCGATCAATGA 59.585 40.000 23.37 0.00 36.50 2.57
2053 2161 6.095580 ACGAGTATATACTGCCGATCAATGAT 59.904 38.462 23.37 0.00 36.50 2.45
2054 2162 6.634837 CGAGTATATACTGCCGATCAATGATC 59.365 42.308 20.13 12.97 36.50 2.92
2056 2164 2.438868 TACTGCCGATCAATGATCCG 57.561 50.000 16.71 11.74 35.83 4.18
2057 2165 0.465705 ACTGCCGATCAATGATCCGT 59.534 50.000 16.71 6.92 35.83 4.69
2058 2166 1.143305 CTGCCGATCAATGATCCGTC 58.857 55.000 16.71 7.24 35.83 4.79
2059 2167 0.249868 TGCCGATCAATGATCCGTCC 60.250 55.000 16.71 4.36 35.83 4.79
2060 2168 1.284982 GCCGATCAATGATCCGTCCG 61.285 60.000 16.71 6.04 35.83 4.79
2061 2169 0.032130 CCGATCAATGATCCGTCCGT 59.968 55.000 16.71 0.00 35.83 4.69
2062 2170 1.131771 CGATCAATGATCCGTCCGTG 58.868 55.000 16.71 0.00 35.83 4.94
2063 2171 0.861837 GATCAATGATCCGTCCGTGC 59.138 55.000 12.01 0.00 33.37 5.34
2064 2172 0.177836 ATCAATGATCCGTCCGTGCA 59.822 50.000 0.00 0.00 0.00 4.57
2065 2173 0.036858 TCAATGATCCGTCCGTGCAA 60.037 50.000 0.00 0.00 0.00 4.08
2066 2174 1.016627 CAATGATCCGTCCGTGCAAT 58.983 50.000 0.00 0.00 0.00 3.56
2067 2175 1.401552 CAATGATCCGTCCGTGCAATT 59.598 47.619 0.00 0.00 0.00 2.32
2068 2176 1.750193 ATGATCCGTCCGTGCAATTT 58.250 45.000 0.00 0.00 0.00 1.82
2069 2177 1.529226 TGATCCGTCCGTGCAATTTT 58.471 45.000 0.00 0.00 0.00 1.82
2070 2178 1.883275 TGATCCGTCCGTGCAATTTTT 59.117 42.857 0.00 0.00 0.00 1.94
2102 2210 2.968737 TGAGCCCTCTCACTCTCAC 58.031 57.895 0.00 0.00 43.95 3.51
2110 2218 3.882888 CCCTCTCACTCTCACTAGATGAC 59.117 52.174 0.00 0.00 32.37 3.06
2151 2259 8.408043 TTTGACTATTTTGTTGATGTGGATCT 57.592 30.769 0.00 0.00 0.00 2.75
2178 2286 5.505181 ACACTCCCACTGTTTCATATTCT 57.495 39.130 0.00 0.00 0.00 2.40
2179 2287 5.491982 ACACTCCCACTGTTTCATATTCTC 58.508 41.667 0.00 0.00 0.00 2.87
2180 2288 5.249393 ACACTCCCACTGTTTCATATTCTCT 59.751 40.000 0.00 0.00 0.00 3.10
2240 2366 4.075963 TCCGCATGATGAATGAAGATCA 57.924 40.909 0.00 0.00 38.72 2.92
2241 2367 4.648651 TCCGCATGATGAATGAAGATCAT 58.351 39.130 0.00 0.00 39.43 2.45
2242 2368 5.797051 TCCGCATGATGAATGAAGATCATA 58.203 37.500 0.00 0.00 37.23 2.15
2246 2372 8.121086 CCGCATGATGAATGAAGATCATATAAC 58.879 37.037 0.00 0.00 37.23 1.89
2255 2381 9.979270 GAATGAAGATCATATAACTTATTGCGG 57.021 33.333 0.00 0.00 35.76 5.69
2256 2382 9.725019 AATGAAGATCATATAACTTATTGCGGA 57.275 29.630 0.00 0.00 35.76 5.54
2281 2407 5.818136 TTTTGGAGAGGAAATGCTATTCG 57.182 39.130 0.00 0.00 0.00 3.34
2282 2408 3.475566 TGGAGAGGAAATGCTATTCGG 57.524 47.619 0.00 0.00 0.00 4.30
2283 2409 2.147150 GGAGAGGAAATGCTATTCGGC 58.853 52.381 0.00 0.00 0.00 5.54
2284 2410 2.485479 GGAGAGGAAATGCTATTCGGCA 60.485 50.000 0.00 0.00 46.63 5.69
2285 2411 3.206150 GAGAGGAAATGCTATTCGGCAA 58.794 45.455 0.00 0.00 45.68 4.52
2286 2412 3.209410 AGAGGAAATGCTATTCGGCAAG 58.791 45.455 0.00 0.00 45.68 4.01
2287 2413 3.118261 AGAGGAAATGCTATTCGGCAAGA 60.118 43.478 0.00 0.00 45.68 3.02
2288 2414 3.817647 GAGGAAATGCTATTCGGCAAGAT 59.182 43.478 0.00 0.00 45.68 2.40
2289 2415 4.210331 AGGAAATGCTATTCGGCAAGATT 58.790 39.130 0.00 0.00 45.68 2.40
2290 2416 4.646492 AGGAAATGCTATTCGGCAAGATTT 59.354 37.500 0.00 0.00 45.68 2.17
2301 2427 5.155509 TCGGCAAGATTTGTTGATTATCG 57.844 39.130 0.00 0.00 0.00 2.92
2303 2430 5.006649 TCGGCAAGATTTGTTGATTATCGAG 59.993 40.000 0.00 0.00 0.00 4.04
2307 2434 7.377928 GGCAAGATTTGTTGATTATCGAGAATG 59.622 37.037 10.53 0.00 0.00 2.67
2312 2439 9.573133 GATTTGTTGATTATCGAGAATGGTTTT 57.427 29.630 10.53 0.00 0.00 2.43
2314 2441 8.964420 TTGTTGATTATCGAGAATGGTTTTTC 57.036 30.769 10.53 0.00 0.00 2.29
2323 2450 7.323049 TCGAGAATGGTTTTTCTTAACACAA 57.677 32.000 0.00 0.00 36.10 3.33
2326 2453 9.672086 CGAGAATGGTTTTTCTTAACACAATAA 57.328 29.630 0.00 0.00 36.10 1.40
2331 2458 6.987404 TGGTTTTTCTTAACACAATAAAGGCC 59.013 34.615 0.00 0.00 0.00 5.19
2334 2461 5.975693 TTCTTAACACAATAAAGGCCCAG 57.024 39.130 0.00 0.00 0.00 4.45
2335 2462 5.249780 TCTTAACACAATAAAGGCCCAGA 57.750 39.130 0.00 0.00 0.00 3.86
2356 2483 2.185262 CGCTCATACATACGCGCATAT 58.815 47.619 5.73 0.00 39.11 1.78
2357 2484 2.598637 CGCTCATACATACGCGCATATT 59.401 45.455 5.73 0.00 39.11 1.28
2358 2485 3.060761 CGCTCATACATACGCGCATATTT 59.939 43.478 5.73 0.00 39.11 1.40
2370 2511 2.685897 GCGCATATTTTCACCCCTACAA 59.314 45.455 0.30 0.00 0.00 2.41
2384 2525 2.238646 CCCTACAAACCCTATGAGCACA 59.761 50.000 0.00 0.00 0.00 4.57
2390 2531 3.627395 AACCCTATGAGCACATTCGAA 57.373 42.857 0.00 0.00 37.87 3.71
2391 2532 3.627395 ACCCTATGAGCACATTCGAAA 57.373 42.857 0.00 0.00 37.87 3.46
2392 2533 3.535561 ACCCTATGAGCACATTCGAAAG 58.464 45.455 0.00 0.00 37.87 2.62
2393 2534 3.197766 ACCCTATGAGCACATTCGAAAGA 59.802 43.478 7.49 0.00 37.87 2.52
2394 2535 4.141620 ACCCTATGAGCACATTCGAAAGAT 60.142 41.667 7.49 0.00 41.60 2.40
2395 2536 4.818546 CCCTATGAGCACATTCGAAAGATT 59.181 41.667 7.49 0.00 41.60 2.40
2396 2537 5.277683 CCCTATGAGCACATTCGAAAGATTG 60.278 44.000 7.49 0.84 44.63 2.67
2397 2538 5.525012 CCTATGAGCACATTCGAAAGATTGA 59.475 40.000 7.49 0.00 42.45 2.57
2398 2539 4.934075 TGAGCACATTCGAAAGATTGAG 57.066 40.909 7.49 0.00 42.45 3.02
2400 2541 2.790387 GCACATTCGAAAGATTGAGCC 58.210 47.619 7.49 0.00 45.65 4.70
2408 2549 2.549754 CGAAAGATTGAGCCGGCATATT 59.450 45.455 31.54 14.43 0.00 1.28
2438 2579 8.939586 ATTGATTATCGAAAATAGTTGCATCG 57.060 30.769 0.00 0.00 34.98 3.84
2451 2592 9.638239 AAATAGTTGCATCGTTTTATCAAATGT 57.362 25.926 0.00 0.00 31.62 2.71
2457 2598 3.238441 TCGTTTTATCAAATGTTGCCGC 58.762 40.909 0.00 0.00 31.62 6.53
2489 2630 2.286872 AGCTGCCTCAATTCTTCATCG 58.713 47.619 0.00 0.00 0.00 3.84
2528 2669 4.454504 AGTTGTTCGAATTACACCCATCAC 59.545 41.667 0.00 0.00 0.00 3.06
2554 2695 0.318955 GCAAGCAGTGACGCCAAATT 60.319 50.000 0.00 0.00 0.00 1.82
2564 2705 0.318614 ACGCCAAATTTTCCTGTGCG 60.319 50.000 0.00 0.00 45.39 5.34
2570 2711 1.698506 AATTTTCCTGTGCGAACCCA 58.301 45.000 0.00 0.00 0.00 4.51
2664 2806 2.101582 ACGTGGCTTTCTCTATGGCTAG 59.898 50.000 0.00 0.00 0.00 3.42
2689 2831 2.860735 GCATACTTCGCACTAGACCTTG 59.139 50.000 0.00 0.00 0.00 3.61
2690 2832 3.448686 CATACTTCGCACTAGACCTTGG 58.551 50.000 0.00 0.00 0.00 3.61
2702 2844 3.243359 AGACCTTGGAGAAAATTGCCA 57.757 42.857 0.00 0.00 0.00 4.92
2703 2845 2.893489 AGACCTTGGAGAAAATTGCCAC 59.107 45.455 0.00 0.00 0.00 5.01
2704 2846 2.893489 GACCTTGGAGAAAATTGCCACT 59.107 45.455 0.00 0.00 0.00 4.00
2705 2847 2.893489 ACCTTGGAGAAAATTGCCACTC 59.107 45.455 0.00 0.00 0.00 3.51
2706 2848 3.160269 CCTTGGAGAAAATTGCCACTCT 58.840 45.455 0.00 0.00 0.00 3.24
2707 2849 4.202567 ACCTTGGAGAAAATTGCCACTCTA 60.203 41.667 0.00 0.00 0.00 2.43
2708 2850 4.397417 CCTTGGAGAAAATTGCCACTCTAG 59.603 45.833 0.00 0.00 0.00 2.43
2709 2851 4.640771 TGGAGAAAATTGCCACTCTAGT 57.359 40.909 0.00 0.00 0.00 2.57
2710 2852 5.755409 TGGAGAAAATTGCCACTCTAGTA 57.245 39.130 0.00 0.00 0.00 1.82
2711 2853 6.313519 TGGAGAAAATTGCCACTCTAGTAT 57.686 37.500 0.00 0.00 0.00 2.12
2712 2854 7.432148 TGGAGAAAATTGCCACTCTAGTATA 57.568 36.000 0.00 0.00 0.00 1.47
2713 2855 7.500992 TGGAGAAAATTGCCACTCTAGTATAG 58.499 38.462 0.00 0.00 41.04 1.31
2714 2856 6.425417 GGAGAAAATTGCCACTCTAGTATAGC 59.575 42.308 0.00 0.00 38.99 2.97
2715 2857 7.130681 AGAAAATTGCCACTCTAGTATAGCT 57.869 36.000 0.00 0.00 38.99 3.32
2716 2858 8.251383 AGAAAATTGCCACTCTAGTATAGCTA 57.749 34.615 0.00 0.00 38.99 3.32
2717 2859 8.364142 AGAAAATTGCCACTCTAGTATAGCTAG 58.636 37.037 0.00 0.00 46.59 3.42
2718 2860 5.652994 ATTGCCACTCTAGTATAGCTAGC 57.347 43.478 6.62 6.62 45.22 3.42
2719 2861 4.374689 TGCCACTCTAGTATAGCTAGCT 57.625 45.455 23.12 23.12 45.22 3.32
2720 2862 4.075682 TGCCACTCTAGTATAGCTAGCTG 58.924 47.826 27.68 9.36 45.22 4.24
2721 2863 3.442273 GCCACTCTAGTATAGCTAGCTGG 59.558 52.174 27.68 16.65 45.22 4.85
2722 2864 3.442273 CCACTCTAGTATAGCTAGCTGGC 59.558 52.174 27.68 15.23 45.22 4.85
2723 2865 4.331968 CACTCTAGTATAGCTAGCTGGCT 58.668 47.826 28.46 28.46 45.22 4.75
2724 2866 4.764823 CACTCTAGTATAGCTAGCTGGCTT 59.235 45.833 30.52 18.87 45.22 4.35
2725 2867 5.941058 CACTCTAGTATAGCTAGCTGGCTTA 59.059 44.000 30.52 17.88 45.22 3.09
2726 2868 5.941647 ACTCTAGTATAGCTAGCTGGCTTAC 59.058 44.000 30.52 26.28 45.22 2.34
2727 2869 6.129414 TCTAGTATAGCTAGCTGGCTTACT 57.871 41.667 30.21 30.21 45.22 2.24
2728 2870 6.544650 TCTAGTATAGCTAGCTGGCTTACTT 58.455 40.000 31.39 22.23 45.22 2.24
2729 2871 7.687388 TCTAGTATAGCTAGCTGGCTTACTTA 58.313 38.462 31.39 23.33 45.22 2.24
2730 2872 8.330247 TCTAGTATAGCTAGCTGGCTTACTTAT 58.670 37.037 31.39 22.47 45.22 1.73
2731 2873 7.164230 AGTATAGCTAGCTGGCTTACTTATG 57.836 40.000 30.52 0.00 42.97 1.90
2732 2874 3.760580 AGCTAGCTGGCTTACTTATGG 57.239 47.619 20.22 0.00 39.86 2.74
2773 2915 4.156008 ACTTTGTCGTGCTGTTCTTTTCTT 59.844 37.500 0.00 0.00 0.00 2.52
2789 2931 8.542953 GTTCTTTTCTTGCAGGATTAGTTTTTG 58.457 33.333 0.00 0.00 0.00 2.44
2790 2932 6.701400 TCTTTTCTTGCAGGATTAGTTTTTGC 59.299 34.615 0.00 0.00 35.42 3.68
2797 2939 5.536161 TGCAGGATTAGTTTTTGCTTTCTCT 59.464 36.000 0.00 0.00 35.85 3.10
2798 2940 6.714810 TGCAGGATTAGTTTTTGCTTTCTCTA 59.285 34.615 0.00 0.00 35.85 2.43
2799 2941 7.230510 TGCAGGATTAGTTTTTGCTTTCTCTAA 59.769 33.333 0.00 0.00 35.85 2.10
2800 2942 7.539022 GCAGGATTAGTTTTTGCTTTCTCTAAC 59.461 37.037 0.00 0.00 0.00 2.34
2801 2943 8.567948 CAGGATTAGTTTTTGCTTTCTCTAACA 58.432 33.333 0.00 0.00 0.00 2.41
2802 2944 9.131791 AGGATTAGTTTTTGCTTTCTCTAACAA 57.868 29.630 0.00 0.00 0.00 2.83
2803 2945 9.914131 GGATTAGTTTTTGCTTTCTCTAACAAT 57.086 29.630 0.00 0.00 0.00 2.71
2860 3002 7.258441 TGGTTGTTTGTTTGATTGTTTCGATA 58.742 30.769 0.00 0.00 0.00 2.92
2875 3017 1.202417 TCGATAAGGCTTTCTCTGCGG 60.202 52.381 4.45 0.00 0.00 5.69
2882 3024 0.514691 GCTTTCTCTGCGGTGACTTG 59.485 55.000 0.00 0.00 0.00 3.16
2913 3055 2.738587 TGTTCTGGTGGTGCCTTTTA 57.261 45.000 0.00 0.00 38.35 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 9.562583 TTGCTTCCGATAAATTTTACACAATAC 57.437 29.630 0.00 0.00 0.00 1.89
47 48 5.090083 GCGTTGCTTCCGATAAATTTTACA 58.910 37.500 0.00 0.00 0.00 2.41
67 68 2.032924 GGTTTGCTGTAACAGAAAGCGT 59.967 45.455 0.00 0.00 39.88 5.07
68 69 2.650608 GGTTTGCTGTAACAGAAAGCG 58.349 47.619 0.00 0.00 39.88 4.68
87 88 1.029947 GGCCCAGGTAACACATTCGG 61.030 60.000 0.00 0.00 41.41 4.30
128 129 3.283751 TCAAACTGAATGTGGTTTCCGT 58.716 40.909 0.00 0.00 34.01 4.69
130 131 7.035612 GGAATATCAAACTGAATGTGGTTTCC 58.964 38.462 0.00 0.00 34.01 3.13
131 132 6.747280 CGGAATATCAAACTGAATGTGGTTTC 59.253 38.462 0.00 0.00 34.01 2.78
139 140 7.255242 CCACAATAGCGGAATATCAAACTGAAT 60.255 37.037 0.00 0.00 0.00 2.57
155 156 8.349245 TCCATTGAATTATTAACCACAATAGCG 58.651 33.333 0.00 0.00 0.00 4.26
260 353 9.209175 CATAGAAAATCTATCTAAAGGAACCGG 57.791 37.037 0.00 0.00 37.58 5.28
325 418 4.201990 GCAGAGATGCTAAAACATTCCCAG 60.202 45.833 0.00 0.00 0.00 4.45
487 581 6.725246 CAAGTGGTACATTCTCGTTCTTTTT 58.275 36.000 0.00 0.00 44.52 1.94
488 582 5.277828 GCAAGTGGTACATTCTCGTTCTTTT 60.278 40.000 0.00 0.00 44.52 2.27
489 583 4.213482 GCAAGTGGTACATTCTCGTTCTTT 59.787 41.667 0.00 0.00 44.52 2.52
490 584 3.746492 GCAAGTGGTACATTCTCGTTCTT 59.254 43.478 0.00 0.00 44.52 2.52
491 585 3.006967 AGCAAGTGGTACATTCTCGTTCT 59.993 43.478 0.00 0.00 44.52 3.01
492 586 3.123621 CAGCAAGTGGTACATTCTCGTTC 59.876 47.826 0.00 0.00 44.52 3.95
493 587 3.067106 CAGCAAGTGGTACATTCTCGTT 58.933 45.455 0.00 0.00 44.52 3.85
494 588 2.299013 TCAGCAAGTGGTACATTCTCGT 59.701 45.455 0.00 0.00 44.52 4.18
495 589 2.668457 GTCAGCAAGTGGTACATTCTCG 59.332 50.000 0.00 0.00 44.52 4.04
496 590 3.664107 TGTCAGCAAGTGGTACATTCTC 58.336 45.455 0.00 0.00 44.52 2.87
497 591 3.769739 TGTCAGCAAGTGGTACATTCT 57.230 42.857 0.00 0.00 44.52 2.40
498 592 3.127548 CCATGTCAGCAAGTGGTACATTC 59.872 47.826 0.00 0.00 44.52 2.67
499 593 3.084039 CCATGTCAGCAAGTGGTACATT 58.916 45.455 0.00 0.00 44.52 2.71
500 594 2.715046 CCATGTCAGCAAGTGGTACAT 58.285 47.619 0.00 0.00 44.52 2.29
501 595 1.881925 GCCATGTCAGCAAGTGGTACA 60.882 52.381 0.00 0.00 34.23 2.90
502 596 0.804989 GCCATGTCAGCAAGTGGTAC 59.195 55.000 0.00 0.00 34.23 3.34
503 597 0.673333 CGCCATGTCAGCAAGTGGTA 60.673 55.000 0.00 0.00 34.23 3.25
504 598 1.968017 CGCCATGTCAGCAAGTGGT 60.968 57.895 0.00 0.00 34.23 4.16
505 599 1.518056 AACGCCATGTCAGCAAGTGG 61.518 55.000 0.00 0.00 34.84 4.00
506 600 0.110056 GAACGCCATGTCAGCAAGTG 60.110 55.000 0.00 0.00 0.00 3.16
507 601 1.568612 CGAACGCCATGTCAGCAAGT 61.569 55.000 0.00 0.00 0.00 3.16
508 602 1.133253 CGAACGCCATGTCAGCAAG 59.867 57.895 0.00 0.00 0.00 4.01
509 603 0.673333 ATCGAACGCCATGTCAGCAA 60.673 50.000 0.00 0.00 0.00 3.91
510 604 1.079197 ATCGAACGCCATGTCAGCA 60.079 52.632 0.00 0.00 0.00 4.41
511 605 0.807667 AGATCGAACGCCATGTCAGC 60.808 55.000 0.00 0.00 0.00 4.26
512 606 0.926155 CAGATCGAACGCCATGTCAG 59.074 55.000 0.00 0.00 0.00 3.51
513 607 0.460109 CCAGATCGAACGCCATGTCA 60.460 55.000 0.00 0.00 0.00 3.58
514 608 1.766143 GCCAGATCGAACGCCATGTC 61.766 60.000 0.00 0.00 0.00 3.06
515 609 1.815421 GCCAGATCGAACGCCATGT 60.815 57.895 0.00 0.00 0.00 3.21
516 610 1.368345 TTGCCAGATCGAACGCCATG 61.368 55.000 0.00 0.00 0.00 3.66
517 611 1.078497 TTGCCAGATCGAACGCCAT 60.078 52.632 0.00 0.00 0.00 4.40
518 612 2.032634 GTTGCCAGATCGAACGCCA 61.033 57.895 0.00 0.00 0.00 5.69
519 613 1.741770 AGTTGCCAGATCGAACGCC 60.742 57.895 0.00 0.00 0.00 5.68
520 614 1.014044 TCAGTTGCCAGATCGAACGC 61.014 55.000 0.00 0.00 0.00 4.84
521 615 1.645034 ATCAGTTGCCAGATCGAACG 58.355 50.000 0.00 0.00 0.00 3.95
522 616 3.002791 TCAATCAGTTGCCAGATCGAAC 58.997 45.455 0.00 0.00 35.26 3.95
523 617 3.264947 CTCAATCAGTTGCCAGATCGAA 58.735 45.455 0.00 0.00 35.26 3.71
524 618 2.234661 ACTCAATCAGTTGCCAGATCGA 59.765 45.455 0.00 0.00 35.26 3.59
525 619 2.350804 CACTCAATCAGTTGCCAGATCG 59.649 50.000 0.00 0.00 35.26 3.69
526 620 2.097142 GCACTCAATCAGTTGCCAGATC 59.903 50.000 0.00 0.00 35.26 2.75
527 621 2.089980 GCACTCAATCAGTTGCCAGAT 58.910 47.619 0.00 0.00 35.26 2.90
528 622 1.072806 AGCACTCAATCAGTTGCCAGA 59.927 47.619 0.00 0.00 35.26 3.86
529 623 1.531423 AGCACTCAATCAGTTGCCAG 58.469 50.000 0.00 0.00 35.26 4.85
530 624 1.985473 AAGCACTCAATCAGTTGCCA 58.015 45.000 0.00 0.00 35.26 4.92
531 625 2.035066 ACAAAGCACTCAATCAGTTGCC 59.965 45.455 0.00 0.00 35.26 4.52
532 626 3.360249 ACAAAGCACTCAATCAGTTGC 57.640 42.857 0.00 0.00 35.26 4.17
533 627 6.245115 TGATACAAAGCACTCAATCAGTTG 57.755 37.500 0.00 0.00 36.65 3.16
534 628 6.882610 TTGATACAAAGCACTCAATCAGTT 57.117 33.333 0.00 0.00 30.26 3.16
535 629 7.081526 GATTGATACAAAGCACTCAATCAGT 57.918 36.000 15.56 3.42 46.78 3.41
539 633 7.310664 CAACAGATTGATACAAAGCACTCAAT 58.689 34.615 0.00 0.00 40.16 2.57
540 634 6.671190 CAACAGATTGATACAAAGCACTCAA 58.329 36.000 0.00 0.00 38.15 3.02
541 635 5.335113 GCAACAGATTGATACAAAGCACTCA 60.335 40.000 0.00 0.00 38.15 3.41
542 636 5.091431 GCAACAGATTGATACAAAGCACTC 58.909 41.667 0.00 0.00 38.15 3.51
543 637 4.082571 GGCAACAGATTGATACAAAGCACT 60.083 41.667 0.00 0.00 38.15 4.40
544 638 4.168760 GGCAACAGATTGATACAAAGCAC 58.831 43.478 0.00 0.00 38.15 4.40
545 639 3.825585 TGGCAACAGATTGATACAAAGCA 59.174 39.130 0.00 0.00 46.17 3.91
546 640 4.439305 TGGCAACAGATTGATACAAAGC 57.561 40.909 0.00 0.00 46.17 3.51
560 654 4.216042 CACATAACTCAAGATGTGGCAACA 59.784 41.667 0.00 0.00 46.03 3.33
561 655 4.726416 CACATAACTCAAGATGTGGCAAC 58.274 43.478 7.04 0.00 46.03 4.17
567 661 5.745312 TCTGGTCACATAACTCAAGATGT 57.255 39.130 0.00 0.00 36.73 3.06
568 662 7.551974 AGAAATCTGGTCACATAACTCAAGATG 59.448 37.037 0.00 0.00 0.00 2.90
569 663 7.628234 AGAAATCTGGTCACATAACTCAAGAT 58.372 34.615 0.00 0.00 0.00 2.40
570 664 7.009179 AGAAATCTGGTCACATAACTCAAGA 57.991 36.000 0.00 0.00 0.00 3.02
571 665 8.037758 ACTAGAAATCTGGTCACATAACTCAAG 58.962 37.037 0.00 0.00 31.74 3.02
572 666 7.907389 ACTAGAAATCTGGTCACATAACTCAA 58.093 34.615 0.00 0.00 31.74 3.02
573 667 7.482169 ACTAGAAATCTGGTCACATAACTCA 57.518 36.000 0.00 0.00 31.74 3.41
574 668 8.779354 AAACTAGAAATCTGGTCACATAACTC 57.221 34.615 0.00 0.00 36.63 3.01
575 669 9.574516 AAAAACTAGAAATCTGGTCACATAACT 57.425 29.630 0.00 0.00 36.63 2.24
615 709 9.225436 TGAACTTGCATAACATAAACAGATACA 57.775 29.630 0.00 0.00 0.00 2.29
618 712 9.182214 AGATGAACTTGCATAACATAAACAGAT 57.818 29.630 0.00 0.00 0.00 2.90
619 713 8.565896 AGATGAACTTGCATAACATAAACAGA 57.434 30.769 0.00 0.00 0.00 3.41
620 714 9.708222 GTAGATGAACTTGCATAACATAAACAG 57.292 33.333 0.00 0.00 0.00 3.16
621 715 9.448438 AGTAGATGAACTTGCATAACATAAACA 57.552 29.630 0.00 0.00 0.00 2.83
622 716 9.708222 CAGTAGATGAACTTGCATAACATAAAC 57.292 33.333 0.00 0.00 0.00 2.01
623 717 9.665719 TCAGTAGATGAACTTGCATAACATAAA 57.334 29.630 0.00 0.00 34.02 1.40
624 718 9.836864 ATCAGTAGATGAACTTGCATAACATAA 57.163 29.630 0.00 0.00 42.53 1.90
710 804 4.635765 GTGAGATATGCTACCAAAAGTGCA 59.364 41.667 0.00 0.00 37.07 4.57
755 849 9.084164 ACTACTACATAGTACAAATCTTTTGCG 57.916 33.333 0.00 0.00 42.69 4.85
819 913 5.089970 ACGAAATCTCCATCATCACTCAA 57.910 39.130 0.00 0.00 0.00 3.02
821 915 7.539712 TTTAACGAAATCTCCATCATCACTC 57.460 36.000 0.00 0.00 0.00 3.51
822 916 7.607991 ACTTTTAACGAAATCTCCATCATCACT 59.392 33.333 0.00 0.00 0.00 3.41
823 917 7.693951 CACTTTTAACGAAATCTCCATCATCAC 59.306 37.037 0.00 0.00 0.00 3.06
831 926 7.009723 TGTTTTTGCACTTTTAACGAAATCTCC 59.990 33.333 0.00 0.00 0.00 3.71
845 940 6.822676 TCAAGAATTTCCATGTTTTTGCACTT 59.177 30.769 0.00 0.00 0.00 3.16
851 946 7.216494 ACCGAATCAAGAATTTCCATGTTTTT 58.784 30.769 0.00 0.00 0.00 1.94
856 951 5.066375 TGCTACCGAATCAAGAATTTCCATG 59.934 40.000 0.00 0.00 0.00 3.66
911 1009 1.692519 ACCCTCGACCACTTATATGGC 59.307 52.381 0.00 0.00 44.33 4.40
952 1054 0.107848 GAAGGGATTCTTCCGCCGAA 60.108 55.000 0.00 0.00 44.60 4.30
986 1088 9.601217 GGGCTATCGACATGTTAATTTATATCT 57.399 33.333 0.00 0.00 0.00 1.98
987 1089 9.601217 AGGGCTATCGACATGTTAATTTATATC 57.399 33.333 0.00 0.00 0.00 1.63
988 1090 9.601217 GAGGGCTATCGACATGTTAATTTATAT 57.399 33.333 0.00 0.00 0.00 0.86
989 1091 8.590204 TGAGGGCTATCGACATGTTAATTTATA 58.410 33.333 0.00 0.00 0.00 0.98
1005 1113 1.977129 AGCAAGAGGATGAGGGCTATC 59.023 52.381 0.00 0.00 0.00 2.08
1012 1120 1.796982 CGTGACGAGCAAGAGGATGAG 60.797 57.143 0.00 0.00 0.00 2.90
1014 1122 1.416813 GCGTGACGAGCAAGAGGATG 61.417 60.000 10.10 0.00 34.19 3.51
1020 1128 1.956170 ACCAAGCGTGACGAGCAAG 60.956 57.895 10.10 0.00 37.01 4.01
1053 1161 2.045242 ACAGCGGGCGAGAGACTA 60.045 61.111 0.00 0.00 40.87 2.59
1070 1178 2.202557 CTATGTCGTCCGTGCGCA 60.203 61.111 5.66 5.66 0.00 6.09
1140 1248 2.361104 GATTTGACGCCCCAGCCA 60.361 61.111 0.00 0.00 34.57 4.75
1143 1251 3.508840 GCCGATTTGACGCCCCAG 61.509 66.667 0.00 0.00 0.00 4.45
1155 1263 1.301244 GTCGCATGGATCTGCCGAT 60.301 57.895 1.66 0.00 39.00 4.18
1302 1410 1.293498 GAGGCGGTTGAAGCTGAGA 59.707 57.895 0.00 0.00 34.52 3.27
1335 1443 0.642156 TGAGAGGCCTTGGGAGGATA 59.358 55.000 6.77 0.00 46.74 2.59
1368 1476 3.910627 AGGAATTGGACTGTAGGTTGAGT 59.089 43.478 0.00 0.00 0.00 3.41
1397 1505 1.271597 GGAAGAAGGTCTGTGGCATGT 60.272 52.381 0.00 0.00 0.00 3.21
1405 1513 0.610687 AAGGAGCGGAAGAAGGTCTG 59.389 55.000 0.00 0.00 36.47 3.51
1434 1542 2.745100 TCGAGGACCACGGTCTCG 60.745 66.667 21.77 21.77 44.04 4.04
1493 1601 4.475444 TCCTGAGGCCGGGGTAGG 62.475 72.222 2.18 9.33 39.38 3.18
1494 1602 2.840102 CTCCTGAGGCCGGGGTAG 60.840 72.222 2.18 0.00 39.38 3.18
1498 1606 4.168291 GAAGCTCCTGAGGCCGGG 62.168 72.222 2.18 0.94 40.31 5.73
1499 1607 3.080121 AGAAGCTCCTGAGGCCGG 61.080 66.667 0.00 0.00 0.00 6.13
1500 1608 2.498726 GAGAAGCTCCTGAGGCCG 59.501 66.667 0.00 0.00 0.00 6.13
1501 1609 2.498726 CGAGAAGCTCCTGAGGCC 59.501 66.667 0.00 0.00 0.00 5.19
1502 1610 2.498726 CCGAGAAGCTCCTGAGGC 59.501 66.667 0.00 0.00 0.00 4.70
1503 1611 2.498726 GCCGAGAAGCTCCTGAGG 59.501 66.667 0.00 0.00 0.00 3.86
1504 1612 1.892819 TTGGCCGAGAAGCTCCTGAG 61.893 60.000 0.00 0.00 0.00 3.35
1505 1613 1.913262 TTGGCCGAGAAGCTCCTGA 60.913 57.895 0.00 0.00 0.00 3.86
1506 1614 1.743252 GTTGGCCGAGAAGCTCCTG 60.743 63.158 0.00 0.00 0.00 3.86
1507 1615 1.768684 TTGTTGGCCGAGAAGCTCCT 61.769 55.000 0.00 0.00 0.00 3.69
1508 1616 1.302511 TTGTTGGCCGAGAAGCTCC 60.303 57.895 0.00 0.00 0.00 4.70
1509 1617 1.869690 GTTGTTGGCCGAGAAGCTC 59.130 57.895 1.96 0.00 0.00 4.09
1623 1731 1.613630 GAAGGAGGAGGGCAGTCCA 60.614 63.158 7.78 0.00 39.34 4.02
1635 1743 2.315925 TGCTATTCTTGGCGAAGGAG 57.684 50.000 8.73 5.31 34.56 3.69
1685 1793 2.049063 CGAGGCCGATCGAATCCC 60.049 66.667 18.66 11.02 45.56 3.85
1692 1800 1.664965 GTACATGCCGAGGCCGATC 60.665 63.158 12.05 0.00 41.09 3.69
1695 1803 1.523711 ATTGTACATGCCGAGGCCG 60.524 57.895 12.05 5.40 41.09 6.13
1729 1837 2.029666 GCTAGTCATGCCGGCGAT 59.970 61.111 23.90 13.76 0.00 4.58
1785 1893 2.716017 GGAGACGTCCAGCAGAGGG 61.716 68.421 13.01 0.00 43.31 4.30
1803 1911 3.104602 CTTGAGATTGGCCAGCGCG 62.105 63.158 5.11 0.00 35.02 6.86
1805 1913 1.377725 ACCTTGAGATTGGCCAGCG 60.378 57.895 5.11 0.00 0.00 5.18
1855 1963 0.674895 CCAGGAGGAAACTTGAGCGG 60.675 60.000 0.00 0.00 44.43 5.52
1856 1964 1.301677 GCCAGGAGGAAACTTGAGCG 61.302 60.000 0.00 0.00 44.43 5.03
1911 2019 1.542108 GCTAGCTATGGGCAGTCCTTG 60.542 57.143 7.70 0.00 44.79 3.61
1933 2041 5.640732 GACGCACAAATAATGATGAAACCT 58.359 37.500 0.00 0.00 0.00 3.50
1934 2042 4.495472 CGACGCACAAATAATGATGAAACC 59.505 41.667 0.00 0.00 0.00 3.27
1937 2045 3.486708 GGCGACGCACAAATAATGATGAA 60.487 43.478 23.09 0.00 0.00 2.57
1938 2046 2.031560 GGCGACGCACAAATAATGATGA 59.968 45.455 23.09 0.00 0.00 2.92
1939 2047 2.375110 GGCGACGCACAAATAATGATG 58.625 47.619 23.09 0.00 0.00 3.07
1940 2048 1.333619 GGGCGACGCACAAATAATGAT 59.666 47.619 23.09 0.00 0.00 2.45
1941 2049 0.730265 GGGCGACGCACAAATAATGA 59.270 50.000 23.09 0.00 0.00 2.57
1942 2050 0.449786 TGGGCGACGCACAAATAATG 59.550 50.000 24.90 0.00 39.83 1.90
1943 2051 2.861364 TGGGCGACGCACAAATAAT 58.139 47.368 24.90 0.00 39.83 1.28
1944 2052 4.380980 TGGGCGACGCACAAATAA 57.619 50.000 24.90 0.00 39.83 1.40
1949 2057 1.658686 AAAAACTTGGGCGACGCACA 61.659 50.000 23.18 23.18 41.67 4.57
1950 2058 1.065109 AAAAACTTGGGCGACGCAC 59.935 52.632 23.09 20.21 0.00 5.34
1956 2064 5.532025 TTAACAAAACAAAAACTTGGGCG 57.468 34.783 0.00 0.00 0.00 6.13
1958 2066 8.657729 ACGTATTTAACAAAACAAAAACTTGGG 58.342 29.630 0.00 0.00 0.00 4.12
2044 2152 0.861837 GCACGGACGGATCATTGATC 59.138 55.000 16.80 16.80 38.25 2.92
2045 2153 0.177836 TGCACGGACGGATCATTGAT 59.822 50.000 0.00 0.00 0.00 2.57
2046 2154 0.036858 TTGCACGGACGGATCATTGA 60.037 50.000 0.00 0.00 0.00 2.57
2047 2155 1.016627 ATTGCACGGACGGATCATTG 58.983 50.000 0.00 0.00 0.00 2.82
2048 2156 1.750193 AATTGCACGGACGGATCATT 58.250 45.000 0.00 0.00 0.00 2.57
2049 2157 1.750193 AAATTGCACGGACGGATCAT 58.250 45.000 0.00 0.00 0.00 2.45
2050 2158 1.529226 AAAATTGCACGGACGGATCA 58.471 45.000 0.00 0.00 0.00 2.92
2051 2159 2.629639 AAAAATTGCACGGACGGATC 57.370 45.000 0.00 0.00 0.00 3.36
2082 2190 8.734381 ATCTAGTGAGAGTGAGAGGGCTCAAA 62.734 46.154 0.00 0.00 42.24 2.69
2083 2191 7.345478 ATCTAGTGAGAGTGAGAGGGCTCAA 62.345 48.000 0.00 0.00 42.24 3.02
2084 2192 5.923777 ATCTAGTGAGAGTGAGAGGGCTCA 61.924 50.000 0.00 0.00 41.08 4.26
2085 2193 2.092646 TCTAGTGAGAGTGAGAGGGCTC 60.093 54.545 0.00 0.00 41.67 4.70
2086 2194 1.919654 TCTAGTGAGAGTGAGAGGGCT 59.080 52.381 0.00 0.00 0.00 5.19
2087 2195 2.428544 TCTAGTGAGAGTGAGAGGGC 57.571 55.000 0.00 0.00 0.00 5.19
2088 2196 3.882888 GTCATCTAGTGAGAGTGAGAGGG 59.117 52.174 0.00 0.00 37.56 4.30
2089 2197 3.882888 GGTCATCTAGTGAGAGTGAGAGG 59.117 52.174 0.00 0.00 37.56 3.69
2090 2198 4.522114 TGGTCATCTAGTGAGAGTGAGAG 58.478 47.826 0.00 0.00 37.56 3.20
2091 2199 4.576330 TGGTCATCTAGTGAGAGTGAGA 57.424 45.455 0.00 0.00 37.56 3.27
2092 2200 5.850557 ATTGGTCATCTAGTGAGAGTGAG 57.149 43.478 0.00 0.00 37.56 3.51
2093 2201 6.611613 AAATTGGTCATCTAGTGAGAGTGA 57.388 37.500 0.00 0.00 37.56 3.41
2094 2202 8.954950 ATAAAATTGGTCATCTAGTGAGAGTG 57.045 34.615 0.00 0.00 37.56 3.51
2095 2203 9.965902 AAATAAAATTGGTCATCTAGTGAGAGT 57.034 29.630 0.00 0.00 37.56 3.24
2145 2253 1.906574 GTGGGAGTGTTGGTAGATCCA 59.093 52.381 0.00 0.00 45.60 3.41
2147 2255 2.567615 ACAGTGGGAGTGTTGGTAGATC 59.432 50.000 0.00 0.00 0.00 2.75
2151 2259 2.506231 TGAAACAGTGGGAGTGTTGGTA 59.494 45.455 0.00 0.00 40.60 3.25
2194 2302 4.329256 GGGTAAGTTACGCTGAATCTCAAC 59.671 45.833 19.78 0.00 38.45 3.18
2263 2389 2.147150 GCCGAATAGCATTTCCTCTCC 58.853 52.381 0.00 0.00 0.00 3.71
2267 2393 3.281727 TCTTGCCGAATAGCATTTCCT 57.718 42.857 0.00 0.00 43.64 3.36
2268 2394 4.574599 AATCTTGCCGAATAGCATTTCC 57.425 40.909 0.00 0.00 43.64 3.13
2269 2395 5.343249 ACAAATCTTGCCGAATAGCATTTC 58.657 37.500 0.00 0.00 43.64 2.17
2270 2396 5.329035 ACAAATCTTGCCGAATAGCATTT 57.671 34.783 0.00 0.00 43.64 2.32
2271 2397 4.989279 ACAAATCTTGCCGAATAGCATT 57.011 36.364 0.00 0.00 43.64 3.56
2272 2398 4.398988 TCAACAAATCTTGCCGAATAGCAT 59.601 37.500 0.00 0.00 43.64 3.79
2273 2399 3.755905 TCAACAAATCTTGCCGAATAGCA 59.244 39.130 0.00 0.00 42.17 3.49
2274 2400 4.355543 TCAACAAATCTTGCCGAATAGC 57.644 40.909 0.00 0.00 0.00 2.97
2275 2401 7.531871 CGATAATCAACAAATCTTGCCGAATAG 59.468 37.037 0.00 0.00 0.00 1.73
2276 2402 7.225734 TCGATAATCAACAAATCTTGCCGAATA 59.774 33.333 0.00 0.00 0.00 1.75
2277 2403 6.038161 TCGATAATCAACAAATCTTGCCGAAT 59.962 34.615 0.00 0.00 0.00 3.34
2278 2404 5.352846 TCGATAATCAACAAATCTTGCCGAA 59.647 36.000 0.00 0.00 0.00 4.30
2279 2405 4.873259 TCGATAATCAACAAATCTTGCCGA 59.127 37.500 0.00 0.00 0.00 5.54
2280 2406 5.006649 TCTCGATAATCAACAAATCTTGCCG 59.993 40.000 0.00 0.00 0.00 5.69
2281 2407 6.363577 TCTCGATAATCAACAAATCTTGCC 57.636 37.500 0.00 0.00 0.00 4.52
2282 2408 7.377928 CCATTCTCGATAATCAACAAATCTTGC 59.622 37.037 0.00 0.00 0.00 4.01
2283 2409 8.400947 ACCATTCTCGATAATCAACAAATCTTG 58.599 33.333 0.00 0.00 0.00 3.02
2284 2410 8.511604 ACCATTCTCGATAATCAACAAATCTT 57.488 30.769 0.00 0.00 0.00 2.40
2285 2411 8.511604 AACCATTCTCGATAATCAACAAATCT 57.488 30.769 0.00 0.00 0.00 2.40
2286 2412 9.573133 AAAACCATTCTCGATAATCAACAAATC 57.427 29.630 0.00 0.00 0.00 2.17
2287 2413 9.927668 AAAAACCATTCTCGATAATCAACAAAT 57.072 25.926 0.00 0.00 0.00 2.32
2288 2414 9.405587 GAAAAACCATTCTCGATAATCAACAAA 57.594 29.630 0.00 0.00 0.00 2.83
2289 2415 8.792633 AGAAAAACCATTCTCGATAATCAACAA 58.207 29.630 0.00 0.00 34.60 2.83
2290 2416 8.335532 AGAAAAACCATTCTCGATAATCAACA 57.664 30.769 0.00 0.00 34.60 3.33
2307 2434 6.425721 GGGCCTTTATTGTGTTAAGAAAAACC 59.574 38.462 0.84 0.00 0.00 3.27
2312 2439 5.475564 GTCTGGGCCTTTATTGTGTTAAGAA 59.524 40.000 4.53 0.00 0.00 2.52
2314 2441 4.142687 CGTCTGGGCCTTTATTGTGTTAAG 60.143 45.833 4.53 0.00 0.00 1.85
2323 2450 0.839946 ATGAGCGTCTGGGCCTTTAT 59.160 50.000 4.53 0.00 0.00 1.40
2326 2453 1.264749 TGTATGAGCGTCTGGGCCTT 61.265 55.000 4.53 0.00 0.00 4.35
2329 2456 1.784525 GTATGTATGAGCGTCTGGGC 58.215 55.000 0.00 0.00 0.00 5.36
2331 2458 1.409412 GCGTATGTATGAGCGTCTGG 58.591 55.000 0.00 0.00 0.00 3.86
2351 2478 4.142026 GGGTTTGTAGGGGTGAAAATATGC 60.142 45.833 0.00 0.00 0.00 3.14
2356 2483 4.354387 TCATAGGGTTTGTAGGGGTGAAAA 59.646 41.667 0.00 0.00 0.00 2.29
2357 2484 3.917629 TCATAGGGTTTGTAGGGGTGAAA 59.082 43.478 0.00 0.00 0.00 2.69
2358 2485 3.521937 CTCATAGGGTTTGTAGGGGTGAA 59.478 47.826 0.00 0.00 0.00 3.18
2370 2511 3.627395 TTCGAATGTGCTCATAGGGTT 57.373 42.857 0.93 0.00 33.49 4.11
2384 2525 1.017387 GCCGGCTCAATCTTTCGAAT 58.983 50.000 22.15 0.00 0.00 3.34
2390 2531 5.171339 AGATAATATGCCGGCTCAATCTT 57.829 39.130 29.70 13.91 0.00 2.40
2391 2532 4.833478 AGATAATATGCCGGCTCAATCT 57.167 40.909 29.70 22.61 0.00 2.40
2392 2533 6.763135 TCAATAGATAATATGCCGGCTCAATC 59.237 38.462 29.70 20.89 0.00 2.67
2393 2534 6.653020 TCAATAGATAATATGCCGGCTCAAT 58.347 36.000 29.70 15.81 0.00 2.57
2394 2535 6.048732 TCAATAGATAATATGCCGGCTCAA 57.951 37.500 29.70 13.42 0.00 3.02
2395 2536 5.675684 TCAATAGATAATATGCCGGCTCA 57.324 39.130 29.70 15.91 0.00 4.26
2396 2537 8.839310 ATAATCAATAGATAATATGCCGGCTC 57.161 34.615 29.70 15.82 33.08 4.70
2397 2538 7.600375 CGATAATCAATAGATAATATGCCGGCT 59.400 37.037 29.70 15.76 33.08 5.52
2398 2539 7.598869 TCGATAATCAATAGATAATATGCCGGC 59.401 37.037 22.73 22.73 33.08 6.13
2399 2540 9.476202 TTCGATAATCAATAGATAATATGCCGG 57.524 33.333 0.00 0.00 33.08 6.13
2430 2571 6.008875 GCAACATTTGATAAAACGATGCAAC 58.991 36.000 0.00 0.00 30.92 4.17
2438 2579 2.344142 CCGCGGCAACATTTGATAAAAC 59.656 45.455 14.67 0.00 0.00 2.43
2471 2612 4.656041 GAAACGATGAAGAATTGAGGCAG 58.344 43.478 0.00 0.00 0.00 4.85
2503 2644 3.404899 TGGGTGTAATTCGAACAACTCC 58.595 45.455 18.04 18.04 34.86 3.85
2528 2669 1.009675 GTCACTGCTTGCACAACCG 60.010 57.895 0.00 0.00 0.00 4.44
2554 2695 4.473643 CTGGGTTCGCACAGGAAA 57.526 55.556 0.00 0.00 44.68 3.13
2578 2719 1.738099 CAAGACGTCCTTGCCCTCG 60.738 63.158 13.01 0.00 44.90 4.63
2640 2782 2.822764 CCATAGAGAAAGCCACGTACC 58.177 52.381 0.00 0.00 0.00 3.34
2664 2806 3.301706 GTCTAGTGCGAAGTATGCTAGC 58.698 50.000 8.10 8.10 31.79 3.42
2670 2812 3.362706 TCCAAGGTCTAGTGCGAAGTAT 58.637 45.455 0.00 0.00 0.00 2.12
2677 2819 4.379918 GCAATTTTCTCCAAGGTCTAGTGC 60.380 45.833 0.00 0.00 0.00 4.40
2689 2831 6.425417 GCTATACTAGAGTGGCAATTTTCTCC 59.575 42.308 0.00 0.00 0.00 3.71
2690 2832 7.213678 AGCTATACTAGAGTGGCAATTTTCTC 58.786 38.462 0.00 0.00 0.00 2.87
2706 2848 7.339721 CCATAAGTAAGCCAGCTAGCTATACTA 59.660 40.741 18.86 11.76 44.11 1.82
2707 2849 6.153680 CCATAAGTAAGCCAGCTAGCTATACT 59.846 42.308 18.86 18.66 44.11 2.12
2708 2850 6.153000 TCCATAAGTAAGCCAGCTAGCTATAC 59.847 42.308 18.86 16.87 44.11 1.47
2709 2851 6.153000 GTCCATAAGTAAGCCAGCTAGCTATA 59.847 42.308 18.86 5.80 44.11 1.31
2710 2852 5.046950 GTCCATAAGTAAGCCAGCTAGCTAT 60.047 44.000 18.86 6.82 44.11 2.97
2711 2853 4.281182 GTCCATAAGTAAGCCAGCTAGCTA 59.719 45.833 18.86 0.00 44.11 3.32
2713 2855 3.070302 AGTCCATAAGTAAGCCAGCTAGC 59.930 47.826 6.62 6.62 0.00 3.42
2714 2856 4.946478 AGTCCATAAGTAAGCCAGCTAG 57.054 45.455 0.00 0.00 0.00 3.42
2715 2857 5.702266 TCTAGTCCATAAGTAAGCCAGCTA 58.298 41.667 0.00 0.00 0.00 3.32
2716 2858 4.547671 TCTAGTCCATAAGTAAGCCAGCT 58.452 43.478 0.00 0.00 0.00 4.24
2717 2859 4.262249 CCTCTAGTCCATAAGTAAGCCAGC 60.262 50.000 0.00 0.00 0.00 4.85
2718 2860 4.262249 GCCTCTAGTCCATAAGTAAGCCAG 60.262 50.000 0.00 0.00 0.00 4.85
2719 2861 3.641906 GCCTCTAGTCCATAAGTAAGCCA 59.358 47.826 0.00 0.00 0.00 4.75
2720 2862 3.007074 GGCCTCTAGTCCATAAGTAAGCC 59.993 52.174 0.00 0.00 0.00 4.35
2721 2863 3.641906 TGGCCTCTAGTCCATAAGTAAGC 59.358 47.826 3.32 0.00 0.00 3.09
2722 2864 5.602628 GTTGGCCTCTAGTCCATAAGTAAG 58.397 45.833 3.32 0.00 31.54 2.34
2723 2865 4.098960 CGTTGGCCTCTAGTCCATAAGTAA 59.901 45.833 3.32 0.00 31.54 2.24
2724 2866 3.635373 CGTTGGCCTCTAGTCCATAAGTA 59.365 47.826 3.32 0.00 31.54 2.24
2725 2867 2.431057 CGTTGGCCTCTAGTCCATAAGT 59.569 50.000 3.32 0.00 31.54 2.24
2726 2868 2.803492 GCGTTGGCCTCTAGTCCATAAG 60.803 54.545 3.32 0.00 31.54 1.73
2727 2869 1.138266 GCGTTGGCCTCTAGTCCATAA 59.862 52.381 3.32 0.00 31.54 1.90
2728 2870 0.750850 GCGTTGGCCTCTAGTCCATA 59.249 55.000 3.32 0.00 31.54 2.74
2729 2871 1.522569 GCGTTGGCCTCTAGTCCAT 59.477 57.895 3.32 0.00 31.54 3.41
2730 2872 2.978824 GCGTTGGCCTCTAGTCCA 59.021 61.111 3.32 0.00 0.00 4.02
2731 2873 2.202756 CGCGTTGGCCTCTAGTCC 60.203 66.667 3.32 0.00 35.02 3.85
2732 2874 2.886124 GCGCGTTGGCCTCTAGTC 60.886 66.667 8.43 0.00 35.02 2.59
2773 2915 5.536161 AGAGAAAGCAAAAACTAATCCTGCA 59.464 36.000 0.00 0.00 35.44 4.41
2841 2983 6.744112 AGCCTTATCGAAACAATCAAACAAA 58.256 32.000 0.00 0.00 0.00 2.83
2860 3002 0.603975 GTCACCGCAGAGAAAGCCTT 60.604 55.000 0.00 0.00 0.00 4.35
2875 3017 9.573133 CCAGAACATAATAAAAATCCAAGTCAC 57.427 33.333 0.00 0.00 0.00 3.67
2882 3024 6.756542 GCACCACCAGAACATAATAAAAATCC 59.243 38.462 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.