Multiple sequence alignment - TraesCS4B01G034800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G034800 chr4B 100.000 4672 0 0 1 4672 25486164 25481493 0.000000e+00 8628.0
1 TraesCS4B01G034800 chr4B 94.468 940 42 4 1 938 6568775 6567844 0.000000e+00 1439.0
2 TraesCS4B01G034800 chr4B 84.263 1093 158 7 2578 3660 25707910 25706822 0.000000e+00 1053.0
3 TraesCS4B01G034800 chr4B 97.567 411 8 2 529 939 25490502 25490094 0.000000e+00 702.0
4 TraesCS4B01G034800 chr4B 86.379 301 39 2 2655 2953 25535927 25536227 1.250000e-85 327.0
5 TraesCS4B01G034800 chr4B 100.000 65 0 0 4134 4198 25481978 25481914 2.280000e-23 121.0
6 TraesCS4B01G034800 chr4B 100.000 65 0 0 4187 4251 25482031 25481967 2.280000e-23 121.0
7 TraesCS4B01G034800 chr2B 98.511 940 10 2 1 938 367702816 367703753 0.000000e+00 1655.0
8 TraesCS4B01G034800 chr2B 92.679 601 42 1 1 601 166754023 166754621 0.000000e+00 865.0
9 TraesCS4B01G034800 chr2B 97.821 413 5 2 529 939 367698479 367698889 0.000000e+00 710.0
10 TraesCS4B01G034800 chr2A 97.994 947 12 3 1 942 729547866 729546922 0.000000e+00 1637.0
11 TraesCS4B01G034800 chr2A 94.274 1013 51 4 2216 3226 195808663 195809670 0.000000e+00 1543.0
12 TraesCS4B01G034800 chr2A 90.854 831 44 18 3224 4023 195809855 195810684 0.000000e+00 1085.0
13 TraesCS4B01G034800 chr2A 96.914 486 15 0 4187 4672 195811054 195811539 0.000000e+00 815.0
14 TraesCS4B01G034800 chr2A 89.556 383 25 2 947 1329 195807512 195807879 5.470000e-129 472.0
15 TraesCS4B01G034800 chr2A 94.872 234 7 3 1567 1796 195808039 195808271 1.240000e-95 361.0
16 TraesCS4B01G034800 chr2A 87.869 305 36 1 2649 2953 195702289 195702592 1.600000e-94 357.0
17 TraesCS4B01G034800 chr2A 96.000 175 7 0 4022 4196 195810942 195811116 7.650000e-73 285.0
18 TraesCS4B01G034800 chr2A 91.045 201 10 4 2018 2217 195808311 195808504 9.970000e-67 265.0
19 TraesCS4B01G034800 chr7B 97.447 940 20 2 1 938 682253201 682252264 0.000000e+00 1600.0
20 TraesCS4B01G034800 chr7B 95.884 413 13 2 529 939 682257538 682257128 0.000000e+00 665.0
21 TraesCS4B01G034800 chr4A 90.607 1203 72 21 3034 4198 585664591 585665790 0.000000e+00 1557.0
22 TraesCS4B01G034800 chr4A 96.489 940 24 3 1 938 718612169 718613101 0.000000e+00 1544.0
23 TraesCS4B01G034800 chr4A 97.325 486 13 0 4187 4672 585665726 585666211 0.000000e+00 826.0
24 TraesCS4B01G034800 chr4A 90.468 577 36 11 947 1522 585662816 585663374 0.000000e+00 743.0
25 TraesCS4B01G034800 chr4A 94.673 413 14 2 529 939 718607921 718608327 6.600000e-178 634.0
26 TraesCS4B01G034800 chr4A 95.536 224 8 2 2216 2439 585664001 585664222 1.600000e-94 357.0
27 TraesCS4B01G034800 chr4A 94.444 234 5 4 1567 1796 585663380 585663609 2.070000e-93 353.0
28 TraesCS4B01G034800 chr4A 87.625 299 36 1 2655 2953 585565758 585565461 3.460000e-91 346.0
29 TraesCS4B01G034800 chr4A 91.045 201 10 4 2018 2217 585663649 585663842 9.970000e-67 265.0
30 TraesCS4B01G034800 chr4A 94.643 112 4 1 2436 2545 585664478 585664589 6.220000e-39 172.0
31 TraesCS4B01G034800 chrUn 92.512 601 40 2 1 601 51456697 51456102 0.000000e+00 856.0
32 TraesCS4B01G034800 chrUn 73.529 238 44 10 1361 1593 190884768 190884991 6.480000e-09 73.1
33 TraesCS4B01G034800 chr1B 92.180 601 42 2 1 601 7405438 7406033 0.000000e+00 845.0
34 TraesCS4B01G034800 chr1B 84.483 116 15 3 1592 1706 504089741 504089854 1.370000e-20 111.0
35 TraesCS4B01G034800 chr3D 86.587 753 81 15 1 743 5530321 5529579 0.000000e+00 813.0
36 TraesCS4B01G034800 chr6D 80.851 188 19 9 1468 1650 254166945 254167120 1.050000e-26 132.0
37 TraesCS4B01G034800 chr6A 77.366 243 33 15 1471 1707 364670167 364669941 1.770000e-24 124.0
38 TraesCS4B01G034800 chr4D 91.250 80 5 1 1656 1733 15220029 15220108 1.780000e-19 108.0
39 TraesCS4B01G034800 chr1D 82.353 119 15 4 1592 1706 377188844 377188960 1.070000e-16 99.0
40 TraesCS4B01G034800 chr6B 73.529 238 44 10 1361 1593 246508412 246508635 6.480000e-09 73.1
41 TraesCS4B01G034800 chr6B 73.529 238 44 10 1361 1593 246674965 246675188 6.480000e-09 73.1
42 TraesCS4B01G034800 chr6B 78.992 119 14 7 1480 1593 246359955 246360067 2.330000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G034800 chr4B 25481493 25486164 4671 True 8628.000000 8628 100.000000 1 4672 1 chr4B.!!$R2 4671
1 TraesCS4B01G034800 chr4B 6567844 6568775 931 True 1439.000000 1439 94.468000 1 938 1 chr4B.!!$R1 937
2 TraesCS4B01G034800 chr4B 25706822 25707910 1088 True 1053.000000 1053 84.263000 2578 3660 1 chr4B.!!$R4 1082
3 TraesCS4B01G034800 chr2B 367698479 367703753 5274 False 1182.500000 1655 98.166000 1 939 2 chr2B.!!$F2 938
4 TraesCS4B01G034800 chr2B 166754023 166754621 598 False 865.000000 865 92.679000 1 601 1 chr2B.!!$F1 600
5 TraesCS4B01G034800 chr2A 729546922 729547866 944 True 1637.000000 1637 97.994000 1 942 1 chr2A.!!$R1 941
6 TraesCS4B01G034800 chr2A 195807512 195811539 4027 False 689.428571 1543 93.359286 947 4672 7 chr2A.!!$F2 3725
7 TraesCS4B01G034800 chr7B 682252264 682257538 5274 True 1132.500000 1600 96.665500 1 939 2 chr7B.!!$R1 938
8 TraesCS4B01G034800 chr4A 718607921 718613101 5180 False 1089.000000 1544 95.581000 1 939 2 chr4A.!!$F2 938
9 TraesCS4B01G034800 chr4A 585662816 585666211 3395 False 610.428571 1557 93.438286 947 4672 7 chr4A.!!$F1 3725
10 TraesCS4B01G034800 chrUn 51456102 51456697 595 True 856.000000 856 92.512000 1 601 1 chrUn.!!$R1 600
11 TraesCS4B01G034800 chr1B 7405438 7406033 595 False 845.000000 845 92.180000 1 601 1 chr1B.!!$F1 600
12 TraesCS4B01G034800 chr3D 5529579 5530321 742 True 813.000000 813 86.587000 1 743 1 chr3D.!!$R1 742

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
108 4451 1.617947 ATGGTCTCCCACGCCTTCTC 61.618 60.0 0.0 0.0 45.65 2.87 F
1348 5698 0.319900 TCAGTTCAGTTCTCAGCCGC 60.320 55.0 0.0 0.0 0.00 6.53 F
1879 6234 0.182537 TTGGGGCGATGATACAAGGG 59.817 55.0 0.0 0.0 0.00 3.95 F
1882 6237 0.182775 GGGCGATGATACAAGGGGTT 59.817 55.0 0.0 0.0 0.00 4.11 F
2138 6494 0.182775 AAGGGACGCCAAAACAGAGT 59.817 50.0 0.0 0.0 0.00 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1806 6161 0.032615 ATCGAGTCCCTCTTCTGCCT 60.033 55.000 0.0 0.0 0.00 4.75 R
2921 7708 0.034198 TCGCAATGAAGTCCAACGGA 59.966 50.000 0.0 0.0 0.00 4.69 R
3226 8019 0.526662 GATGAAGGACTCGACACGGT 59.473 55.000 0.0 0.0 0.00 4.83 R
3543 8524 1.134580 CATCGTGGTGCTCTGGAATCT 60.135 52.381 0.0 0.0 0.00 2.40 R
4073 9343 1.912417 AGAGTGTAACAGGCGAGTCT 58.088 50.000 0.0 0.0 41.43 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 4451 1.617947 ATGGTCTCCCACGCCTTCTC 61.618 60.000 0.00 0.00 45.65 2.87
123 4466 4.052229 CTCCGCCGTGTCCTTCGT 62.052 66.667 0.00 0.00 0.00 3.85
201 4544 2.331132 GGTCGTCGTTCTCCTCGGT 61.331 63.158 0.00 0.00 0.00 4.69
669 5019 4.392940 TCTGCTCTTCCCTTTTCTTCTTG 58.607 43.478 0.00 0.00 0.00 3.02
839 5189 3.556999 ACTGCACGTCTCCATCTACTAT 58.443 45.455 0.00 0.00 0.00 2.12
939 5289 3.249559 GTGAGCTTAGCATGGCTAACATC 59.750 47.826 7.07 8.18 44.75 3.06
940 5290 3.135348 TGAGCTTAGCATGGCTAACATCT 59.865 43.478 7.07 4.91 44.75 2.90
942 5292 3.881688 AGCTTAGCATGGCTAACATCTTG 59.118 43.478 7.07 0.00 44.75 3.02
943 5293 3.004106 GCTTAGCATGGCTAACATCTTGG 59.996 47.826 6.58 0.00 44.75 3.61
944 5294 2.814805 AGCATGGCTAACATCTTGGT 57.185 45.000 0.00 0.00 37.84 3.67
945 5295 2.648059 AGCATGGCTAACATCTTGGTC 58.352 47.619 0.00 0.00 37.84 4.02
951 5301 2.420687 GGCTAACATCTTGGTCCTCCTG 60.421 54.545 0.00 0.00 34.23 3.86
1017 5367 2.202932 ATGCAGACCATCGCGACC 60.203 61.111 12.93 0.56 0.00 4.79
1122 5472 2.836360 GGGAGGGTGACGGCGATA 60.836 66.667 16.62 0.00 0.00 2.92
1167 5517 1.742880 CACACTGCCGAGGGACATG 60.743 63.158 0.00 0.00 0.00 3.21
1275 5625 1.106351 TGCGGCTGGACAACAACAAT 61.106 50.000 0.00 0.00 0.00 2.71
1307 5657 2.485122 CGTTGGATTCTTGGCCGC 59.515 61.111 0.00 0.00 0.00 6.53
1329 5679 2.674747 CGCCAAATTGCTGCAGGTAATT 60.675 45.455 17.12 10.56 40.91 1.40
1330 5680 2.931969 GCCAAATTGCTGCAGGTAATTC 59.068 45.455 17.12 0.00 38.85 2.17
1331 5681 3.617045 GCCAAATTGCTGCAGGTAATTCA 60.617 43.478 17.12 0.00 38.85 2.57
1332 5682 4.178540 CCAAATTGCTGCAGGTAATTCAG 58.821 43.478 17.12 9.48 38.85 3.02
1334 5684 5.232463 CAAATTGCTGCAGGTAATTCAGTT 58.768 37.500 17.12 3.83 38.85 3.16
1335 5685 4.708726 ATTGCTGCAGGTAATTCAGTTC 57.291 40.909 17.12 0.00 0.00 3.01
1336 5686 3.138884 TGCTGCAGGTAATTCAGTTCA 57.861 42.857 17.12 0.00 0.00 3.18
1337 5687 3.076621 TGCTGCAGGTAATTCAGTTCAG 58.923 45.455 17.12 0.00 0.00 3.02
1338 5688 3.077359 GCTGCAGGTAATTCAGTTCAGT 58.923 45.455 17.12 0.00 0.00 3.41
1339 5689 3.503748 GCTGCAGGTAATTCAGTTCAGTT 59.496 43.478 17.12 0.00 0.00 3.16
1340 5690 4.378874 GCTGCAGGTAATTCAGTTCAGTTC 60.379 45.833 17.12 0.00 0.00 3.01
1341 5691 4.973168 TGCAGGTAATTCAGTTCAGTTCT 58.027 39.130 0.00 0.00 0.00 3.01
1342 5692 4.997395 TGCAGGTAATTCAGTTCAGTTCTC 59.003 41.667 0.00 0.00 0.00 2.87
1343 5693 4.997395 GCAGGTAATTCAGTTCAGTTCTCA 59.003 41.667 0.00 0.00 0.00 3.27
1344 5694 5.121454 GCAGGTAATTCAGTTCAGTTCTCAG 59.879 44.000 0.00 0.00 0.00 3.35
1345 5695 5.121454 CAGGTAATTCAGTTCAGTTCTCAGC 59.879 44.000 0.00 0.00 0.00 4.26
1346 5696 4.393371 GGTAATTCAGTTCAGTTCTCAGCC 59.607 45.833 0.00 0.00 0.00 4.85
1347 5697 2.154854 TTCAGTTCAGTTCTCAGCCG 57.845 50.000 0.00 0.00 0.00 5.52
1348 5698 0.319900 TCAGTTCAGTTCTCAGCCGC 60.320 55.000 0.00 0.00 0.00 6.53
1372 5722 5.979288 ACTTTGTACCGTCTGATCTACTT 57.021 39.130 0.00 0.00 0.00 2.24
1374 5724 6.157211 ACTTTGTACCGTCTGATCTACTTTG 58.843 40.000 0.00 0.00 0.00 2.77
1375 5725 5.717078 TTGTACCGTCTGATCTACTTTGT 57.283 39.130 0.00 0.00 0.00 2.83
1376 5726 5.306532 TGTACCGTCTGATCTACTTTGTC 57.693 43.478 0.00 0.00 0.00 3.18
1377 5727 4.763279 TGTACCGTCTGATCTACTTTGTCA 59.237 41.667 0.00 0.00 0.00 3.58
1378 5728 4.442375 ACCGTCTGATCTACTTTGTCAG 57.558 45.455 0.00 0.00 40.48 3.51
1439 5789 1.337703 GTTGCTCAATGTGCCAACTCA 59.662 47.619 4.77 0.00 0.00 3.41
1440 5790 1.689984 TGCTCAATGTGCCAACTCAA 58.310 45.000 4.77 0.00 0.00 3.02
1446 5796 3.069872 TCAATGTGCCAACTCAATGCTTT 59.930 39.130 0.00 0.00 0.00 3.51
1457 5807 7.147312 CCAACTCAATGCTTTACTTGAATGAA 58.853 34.615 0.00 0.00 31.40 2.57
1464 5814 9.967245 CAATGCTTTACTTGAATGAATGAATTG 57.033 29.630 0.00 0.00 0.00 2.32
1465 5815 7.585286 TGCTTTACTTGAATGAATGAATTGC 57.415 32.000 0.00 0.00 0.00 3.56
1466 5816 7.380536 TGCTTTACTTGAATGAATGAATTGCT 58.619 30.769 0.00 0.00 0.00 3.91
1483 5833 3.032017 TGCTAGCTCACTTCAGTTCAC 57.968 47.619 17.23 0.00 0.00 3.18
1486 5836 4.280929 TGCTAGCTCACTTCAGTTCACTTA 59.719 41.667 17.23 0.00 0.00 2.24
1496 5846 6.092807 CACTTCAGTTCACTTAAGGATTAGGC 59.907 42.308 7.53 0.00 32.87 3.93
1506 5856 0.610687 AGGATTAGGCATAGCGCTCC 59.389 55.000 16.34 9.92 41.91 4.70
1522 5872 1.202359 GCTCCAAAACGTTTCAGGCAA 60.202 47.619 21.41 9.49 0.00 4.52
1523 5873 2.737039 GCTCCAAAACGTTTCAGGCAAA 60.737 45.455 21.41 8.94 0.00 3.68
1524 5874 3.115554 CTCCAAAACGTTTCAGGCAAAG 58.884 45.455 21.41 13.30 0.00 2.77
1525 5875 2.494073 TCCAAAACGTTTCAGGCAAAGT 59.506 40.909 21.41 0.00 0.00 2.66
1526 5876 3.056465 TCCAAAACGTTTCAGGCAAAGTT 60.056 39.130 21.41 0.00 0.00 2.66
1527 5877 3.682377 CCAAAACGTTTCAGGCAAAGTTT 59.318 39.130 15.01 0.00 31.83 2.66
1528 5878 4.153296 CCAAAACGTTTCAGGCAAAGTTTT 59.847 37.500 15.01 6.90 36.63 2.43
1529 5879 5.348997 CCAAAACGTTTCAGGCAAAGTTTTA 59.651 36.000 15.01 0.00 35.45 1.52
1530 5880 6.036626 CCAAAACGTTTCAGGCAAAGTTTTAT 59.963 34.615 15.01 0.00 35.45 1.40
1531 5881 7.222999 CCAAAACGTTTCAGGCAAAGTTTTATA 59.777 33.333 15.01 0.00 35.45 0.98
1532 5882 8.760569 CAAAACGTTTCAGGCAAAGTTTTATAT 58.239 29.630 15.01 0.00 35.45 0.86
1533 5883 9.968870 AAAACGTTTCAGGCAAAGTTTTATATA 57.031 25.926 15.01 0.00 35.64 0.86
1537 5887 9.878599 CGTTTCAGGCAAAGTTTTATATATAGG 57.121 33.333 0.00 0.00 0.00 2.57
1540 5890 9.793259 TTCAGGCAAAGTTTTATATATAGGGAG 57.207 33.333 0.00 0.00 0.00 4.30
1541 5891 8.945193 TCAGGCAAAGTTTTATATATAGGGAGT 58.055 33.333 0.00 0.00 0.00 3.85
1542 5892 9.574516 CAGGCAAAGTTTTATATATAGGGAGTT 57.425 33.333 0.00 0.00 0.00 3.01
1543 5893 9.794719 AGGCAAAGTTTTATATATAGGGAGTTC 57.205 33.333 0.00 0.00 0.00 3.01
1544 5894 9.011095 GGCAAAGTTTTATATATAGGGAGTTCC 57.989 37.037 0.00 0.00 0.00 3.62
1559 5909 4.928601 GGAGTTCCCTGTGTAAAAACAAC 58.071 43.478 0.00 0.00 0.00 3.32
1560 5910 4.643334 GGAGTTCCCTGTGTAAAAACAACT 59.357 41.667 0.00 0.00 0.00 3.16
1561 5911 5.824097 GGAGTTCCCTGTGTAAAAACAACTA 59.176 40.000 0.00 0.00 0.00 2.24
1562 5912 6.017357 GGAGTTCCCTGTGTAAAAACAACTAG 60.017 42.308 0.00 0.00 0.00 2.57
1563 5913 5.826208 AGTTCCCTGTGTAAAAACAACTAGG 59.174 40.000 0.00 0.00 0.00 3.02
1564 5914 5.633655 TCCCTGTGTAAAAACAACTAGGA 57.366 39.130 0.00 0.00 0.00 2.94
1565 5915 5.370679 TCCCTGTGTAAAAACAACTAGGAC 58.629 41.667 0.00 0.00 0.00 3.85
1582 5932 6.479884 ACTAGGACTCAATTTTGCTTCAGAT 58.520 36.000 0.00 0.00 0.00 2.90
1716 6067 1.380302 GGAGCAGAGGGAAAGGCAA 59.620 57.895 0.00 0.00 0.00 4.52
1717 6068 0.679321 GGAGCAGAGGGAAAGGCAAG 60.679 60.000 0.00 0.00 0.00 4.01
1761 6115 1.171308 CATTGAGGAGTGCAACCCAG 58.829 55.000 8.18 0.00 37.80 4.45
1762 6116 0.773644 ATTGAGGAGTGCAACCCAGT 59.226 50.000 8.18 1.65 37.80 4.00
1763 6117 1.429930 TTGAGGAGTGCAACCCAGTA 58.570 50.000 8.18 0.00 37.80 2.74
1764 6118 0.685097 TGAGGAGTGCAACCCAGTAC 59.315 55.000 8.18 0.00 37.80 2.73
1796 6151 4.965814 TCTGAACTCTGCAATCTTTCAGT 58.034 39.130 18.97 0.00 42.47 3.41
1797 6152 5.371526 TCTGAACTCTGCAATCTTTCAGTT 58.628 37.500 18.97 6.75 42.47 3.16
1798 6153 5.237996 TCTGAACTCTGCAATCTTTCAGTTG 59.762 40.000 18.97 3.99 42.47 3.16
1808 6163 5.458891 CAATCTTTCAGTTGCAGAAGAAGG 58.541 41.667 0.00 0.00 0.00 3.46
1809 6164 2.880890 TCTTTCAGTTGCAGAAGAAGGC 59.119 45.455 0.00 0.00 0.00 4.35
1810 6165 2.346766 TTCAGTTGCAGAAGAAGGCA 57.653 45.000 0.00 0.00 38.46 4.75
1811 6166 1.888215 TCAGTTGCAGAAGAAGGCAG 58.112 50.000 0.00 0.00 41.68 4.85
1814 6169 2.225963 CAGTTGCAGAAGAAGGCAGAAG 59.774 50.000 0.00 0.00 41.68 2.85
1815 6170 2.105477 AGTTGCAGAAGAAGGCAGAAGA 59.895 45.455 0.00 0.00 41.68 2.87
1816 6171 2.469274 TGCAGAAGAAGGCAGAAGAG 57.531 50.000 0.00 0.00 34.58 2.85
1817 6172 1.002888 TGCAGAAGAAGGCAGAAGAGG 59.997 52.381 0.00 0.00 34.58 3.69
1818 6173 1.678425 GCAGAAGAAGGCAGAAGAGGG 60.678 57.143 0.00 0.00 0.00 4.30
1819 6174 1.905215 CAGAAGAAGGCAGAAGAGGGA 59.095 52.381 0.00 0.00 0.00 4.20
1820 6175 1.905894 AGAAGAAGGCAGAAGAGGGAC 59.094 52.381 0.00 0.00 0.00 4.46
1837 6192 5.538849 AGGGACTCGATTAATCTTCCTTC 57.461 43.478 19.33 9.73 0.00 3.46
1838 6193 5.212745 AGGGACTCGATTAATCTTCCTTCT 58.787 41.667 19.33 11.15 0.00 2.85
1839 6194 5.303333 AGGGACTCGATTAATCTTCCTTCTC 59.697 44.000 19.33 8.45 0.00 2.87
1840 6195 5.216648 GGACTCGATTAATCTTCCTTCTCG 58.783 45.833 13.45 0.00 0.00 4.04
1841 6196 5.221087 GGACTCGATTAATCTTCCTTCTCGT 60.221 44.000 13.45 0.00 0.00 4.18
1842 6197 5.583495 ACTCGATTAATCTTCCTTCTCGTG 58.417 41.667 13.45 2.51 0.00 4.35
1843 6198 5.357314 ACTCGATTAATCTTCCTTCTCGTGA 59.643 40.000 13.45 0.00 0.00 4.35
1844 6199 6.039941 ACTCGATTAATCTTCCTTCTCGTGAT 59.960 38.462 13.45 0.00 0.00 3.06
1845 6200 6.806751 TCGATTAATCTTCCTTCTCGTGATT 58.193 36.000 13.45 0.00 0.00 2.57
1846 6201 7.937649 TCGATTAATCTTCCTTCTCGTGATTA 58.062 34.615 13.45 0.00 0.00 1.75
1847 6202 8.410912 TCGATTAATCTTCCTTCTCGTGATTAA 58.589 33.333 13.45 0.00 41.06 1.40
1848 6203 9.031360 CGATTAATCTTCCTTCTCGTGATTAAA 57.969 33.333 13.45 0.00 40.56 1.52
1871 6226 7.595819 AAAAATAATAATCTTGGGGCGATGA 57.404 32.000 0.00 0.00 0.00 2.92
1872 6227 7.781324 AAAATAATAATCTTGGGGCGATGAT 57.219 32.000 0.00 0.00 0.00 2.45
1873 6228 8.877864 AAAATAATAATCTTGGGGCGATGATA 57.122 30.769 0.00 0.00 0.00 2.15
1874 6229 7.865706 AATAATAATCTTGGGGCGATGATAC 57.134 36.000 0.00 0.00 0.00 2.24
1875 6230 4.908601 ATAATCTTGGGGCGATGATACA 57.091 40.909 0.00 0.00 0.00 2.29
1876 6231 3.576078 AATCTTGGGGCGATGATACAA 57.424 42.857 0.00 0.00 0.00 2.41
1877 6232 2.620251 TCTTGGGGCGATGATACAAG 57.380 50.000 0.00 0.00 39.76 3.16
1878 6233 1.140852 TCTTGGGGCGATGATACAAGG 59.859 52.381 0.00 0.00 39.10 3.61
1879 6234 0.182537 TTGGGGCGATGATACAAGGG 59.817 55.000 0.00 0.00 0.00 3.95
1880 6235 1.073199 GGGGCGATGATACAAGGGG 59.927 63.158 0.00 0.00 0.00 4.79
1881 6236 1.705997 GGGGCGATGATACAAGGGGT 61.706 60.000 0.00 0.00 0.00 4.95
1882 6237 0.182775 GGGCGATGATACAAGGGGTT 59.817 55.000 0.00 0.00 0.00 4.11
1883 6238 1.418637 GGGCGATGATACAAGGGGTTA 59.581 52.381 0.00 0.00 0.00 2.85
1884 6239 2.158726 GGGCGATGATACAAGGGGTTAA 60.159 50.000 0.00 0.00 0.00 2.01
1885 6240 3.497942 GGGCGATGATACAAGGGGTTAAT 60.498 47.826 0.00 0.00 0.00 1.40
1886 6241 3.502211 GGCGATGATACAAGGGGTTAATG 59.498 47.826 0.00 0.00 0.00 1.90
1887 6242 4.134563 GCGATGATACAAGGGGTTAATGT 58.865 43.478 0.00 0.00 0.00 2.71
1888 6243 4.578928 GCGATGATACAAGGGGTTAATGTT 59.421 41.667 0.00 0.00 0.00 2.71
1889 6244 5.761234 GCGATGATACAAGGGGTTAATGTTA 59.239 40.000 0.00 0.00 0.00 2.41
1890 6245 6.261381 GCGATGATACAAGGGGTTAATGTTAA 59.739 38.462 0.00 0.00 0.00 2.01
1891 6246 7.040686 GCGATGATACAAGGGGTTAATGTTAAT 60.041 37.037 0.00 0.00 0.00 1.40
1892 6247 9.496873 CGATGATACAAGGGGTTAATGTTAATA 57.503 33.333 0.00 0.00 0.00 0.98
1899 6254 8.098286 ACAAGGGGTTAATGTTAATAAAAAGGC 58.902 33.333 0.00 0.00 0.00 4.35
1900 6255 8.318412 CAAGGGGTTAATGTTAATAAAAAGGCT 58.682 33.333 0.00 0.00 0.00 4.58
1901 6256 9.549984 AAGGGGTTAATGTTAATAAAAAGGCTA 57.450 29.630 0.00 0.00 0.00 3.93
1902 6257 8.974238 AGGGGTTAATGTTAATAAAAAGGCTAC 58.026 33.333 0.00 0.00 0.00 3.58
1903 6258 8.974238 GGGGTTAATGTTAATAAAAAGGCTACT 58.026 33.333 0.00 0.00 0.00 2.57
1904 6259 9.797556 GGGTTAATGTTAATAAAAAGGCTACTG 57.202 33.333 0.00 0.00 0.00 2.74
1905 6260 9.797556 GGTTAATGTTAATAAAAAGGCTACTGG 57.202 33.333 0.00 0.00 0.00 4.00
1908 6263 8.879427 AATGTTAATAAAAAGGCTACTGGACT 57.121 30.769 0.00 0.00 32.36 3.85
1909 6264 8.879427 ATGTTAATAAAAAGGCTACTGGACTT 57.121 30.769 0.00 0.00 47.00 3.01
1917 6272 3.676093 AGGCTACTGGACTTTGTTAAGC 58.324 45.455 0.00 0.00 34.60 3.09
1918 6273 3.072476 AGGCTACTGGACTTTGTTAAGCA 59.928 43.478 0.00 0.00 34.60 3.91
1919 6274 3.818773 GGCTACTGGACTTTGTTAAGCAA 59.181 43.478 0.00 0.00 34.60 3.91
1920 6275 4.320275 GGCTACTGGACTTTGTTAAGCAAC 60.320 45.833 0.00 0.00 36.72 4.17
1921 6276 4.320275 GCTACTGGACTTTGTTAAGCAACC 60.320 45.833 0.00 0.00 36.72 3.77
1922 6277 3.626930 ACTGGACTTTGTTAAGCAACCA 58.373 40.909 0.00 0.00 36.72 3.67
1923 6278 4.215109 ACTGGACTTTGTTAAGCAACCAT 58.785 39.130 0.00 0.00 36.72 3.55
1924 6279 4.037923 ACTGGACTTTGTTAAGCAACCATG 59.962 41.667 0.00 0.00 36.72 3.66
1941 6296 6.632909 CAACCATGCTTTCTTGATTTATCCA 58.367 36.000 0.00 0.00 0.00 3.41
1942 6297 6.855763 ACCATGCTTTCTTGATTTATCCAA 57.144 33.333 0.00 0.00 0.00 3.53
1943 6298 6.870769 ACCATGCTTTCTTGATTTATCCAAG 58.129 36.000 0.00 0.00 41.63 3.61
1944 6299 6.438425 ACCATGCTTTCTTGATTTATCCAAGT 59.562 34.615 0.00 0.00 41.18 3.16
1945 6300 7.615365 ACCATGCTTTCTTGATTTATCCAAGTA 59.385 33.333 0.00 0.00 41.18 2.24
1946 6301 7.917505 CCATGCTTTCTTGATTTATCCAAGTAC 59.082 37.037 0.00 0.00 41.18 2.73
1947 6302 7.994425 TGCTTTCTTGATTTATCCAAGTACA 57.006 32.000 0.00 0.00 41.18 2.90
1948 6303 8.579850 TGCTTTCTTGATTTATCCAAGTACAT 57.420 30.769 0.00 0.00 41.18 2.29
1949 6304 9.023962 TGCTTTCTTGATTTATCCAAGTACATT 57.976 29.630 0.00 0.00 41.18 2.71
1956 6311 9.913310 TTGATTTATCCAAGTACATTATGGTCA 57.087 29.630 0.00 0.00 35.66 4.02
1957 6312 9.913310 TGATTTATCCAAGTACATTATGGTCAA 57.087 29.630 0.00 0.00 35.66 3.18
1959 6314 9.920946 ATTTATCCAAGTACATTATGGTCAAGT 57.079 29.630 0.00 0.00 35.66 3.16
1960 6315 9.747898 TTTATCCAAGTACATTATGGTCAAGTT 57.252 29.630 0.00 0.00 35.66 2.66
1961 6316 9.747898 TTATCCAAGTACATTATGGTCAAGTTT 57.252 29.630 0.00 0.00 35.66 2.66
1962 6317 8.650143 ATCCAAGTACATTATGGTCAAGTTTT 57.350 30.769 0.00 0.00 35.66 2.43
1963 6318 9.747898 ATCCAAGTACATTATGGTCAAGTTTTA 57.252 29.630 0.00 0.00 35.66 1.52
1964 6319 9.747898 TCCAAGTACATTATGGTCAAGTTTTAT 57.252 29.630 0.00 0.00 35.66 1.40
1977 6332 9.378551 TGGTCAAGTTTTATAAGTGTATAGCTG 57.621 33.333 0.00 0.00 0.00 4.24
1978 6333 8.336080 GGTCAAGTTTTATAAGTGTATAGCTGC 58.664 37.037 0.00 0.00 0.00 5.25
1979 6334 8.056571 GTCAAGTTTTATAAGTGTATAGCTGCG 58.943 37.037 0.00 0.00 0.00 5.18
1980 6335 7.977293 TCAAGTTTTATAAGTGTATAGCTGCGA 59.023 33.333 0.00 0.00 0.00 5.10
1981 6336 7.695869 AGTTTTATAAGTGTATAGCTGCGAC 57.304 36.000 0.00 0.00 0.00 5.19
1982 6337 7.262772 AGTTTTATAAGTGTATAGCTGCGACA 58.737 34.615 0.00 0.00 0.00 4.35
1983 6338 7.762615 AGTTTTATAAGTGTATAGCTGCGACAA 59.237 33.333 0.00 0.00 0.00 3.18
1984 6339 8.385111 GTTTTATAAGTGTATAGCTGCGACAAA 58.615 33.333 0.00 0.00 0.00 2.83
1985 6340 8.481974 TTTATAAGTGTATAGCTGCGACAAAA 57.518 30.769 0.00 2.37 0.00 2.44
1986 6341 8.657074 TTATAAGTGTATAGCTGCGACAAAAT 57.343 30.769 0.00 4.55 0.00 1.82
1987 6342 4.864916 AGTGTATAGCTGCGACAAAATG 57.135 40.909 0.00 0.00 0.00 2.32
1988 6343 4.253685 AGTGTATAGCTGCGACAAAATGT 58.746 39.130 0.00 0.00 0.00 2.71
1989 6344 4.695455 AGTGTATAGCTGCGACAAAATGTT 59.305 37.500 0.00 0.00 0.00 2.71
1990 6345 5.181245 AGTGTATAGCTGCGACAAAATGTTT 59.819 36.000 0.00 0.00 0.00 2.83
1991 6346 5.283717 GTGTATAGCTGCGACAAAATGTTTG 59.716 40.000 0.00 0.00 0.00 2.93
1992 6347 2.869233 AGCTGCGACAAAATGTTTGT 57.131 40.000 6.08 6.08 34.97 2.83
1993 6348 3.980646 AGCTGCGACAAAATGTTTGTA 57.019 38.095 6.36 0.00 31.96 2.41
1994 6349 4.503741 AGCTGCGACAAAATGTTTGTAT 57.496 36.364 6.36 0.00 31.96 2.29
1995 6350 4.229096 AGCTGCGACAAAATGTTTGTATG 58.771 39.130 6.36 4.28 31.96 2.39
1996 6351 4.023279 AGCTGCGACAAAATGTTTGTATGA 60.023 37.500 6.36 0.00 31.96 2.15
1997 6352 4.858692 GCTGCGACAAAATGTTTGTATGAT 59.141 37.500 6.36 0.00 31.96 2.45
1998 6353 5.220080 GCTGCGACAAAATGTTTGTATGATG 60.220 40.000 6.36 0.00 31.96 3.07
1999 6354 5.767269 TGCGACAAAATGTTTGTATGATGT 58.233 33.333 6.36 0.00 31.96 3.06
2000 6355 6.903419 TGCGACAAAATGTTTGTATGATGTA 58.097 32.000 6.36 0.00 31.96 2.29
2001 6356 7.534282 TGCGACAAAATGTTTGTATGATGTAT 58.466 30.769 6.36 0.00 31.96 2.29
2002 6357 7.484324 TGCGACAAAATGTTTGTATGATGTATG 59.516 33.333 6.36 0.00 31.96 2.39
2003 6358 7.044117 GCGACAAAATGTTTGTATGATGTATGG 60.044 37.037 6.36 0.00 31.96 2.74
2004 6359 7.967854 CGACAAAATGTTTGTATGATGTATGGT 59.032 33.333 6.36 0.00 31.96 3.55
2005 6360 9.289303 GACAAAATGTTTGTATGATGTATGGTC 57.711 33.333 6.36 0.00 31.96 4.02
2006 6361 9.023962 ACAAAATGTTTGTATGATGTATGGTCT 57.976 29.630 4.59 0.00 0.00 3.85
2036 6391 9.672086 TTTCTAATTAATCCACTTTGTTCAACG 57.328 29.630 0.00 0.00 0.00 4.10
2038 6393 4.839668 TTAATCCACTTTGTTCAACGGG 57.160 40.909 0.00 0.00 0.00 5.28
2056 6411 2.100252 CGGGGTAGAATTGCTTAGTCGA 59.900 50.000 0.00 0.00 0.00 4.20
2064 6419 2.902705 TTGCTTAGTCGACTGTTGGT 57.097 45.000 28.12 2.87 0.00 3.67
2133 6489 6.869388 TCATTTATTTAAAGGGACGCCAAAAC 59.131 34.615 0.00 0.00 0.00 2.43
2134 6490 5.786264 TTATTTAAAGGGACGCCAAAACA 57.214 34.783 0.00 0.00 0.00 2.83
2135 6491 3.719173 TTTAAAGGGACGCCAAAACAG 57.281 42.857 0.00 0.00 0.00 3.16
2136 6492 2.642154 TAAAGGGACGCCAAAACAGA 57.358 45.000 0.00 0.00 0.00 3.41
2137 6493 1.318576 AAAGGGACGCCAAAACAGAG 58.681 50.000 0.00 0.00 0.00 3.35
2138 6494 0.182775 AAGGGACGCCAAAACAGAGT 59.817 50.000 0.00 0.00 0.00 3.24
2139 6495 1.053424 AGGGACGCCAAAACAGAGTA 58.947 50.000 0.00 0.00 0.00 2.59
2140 6496 1.002087 AGGGACGCCAAAACAGAGTAG 59.998 52.381 0.00 0.00 0.00 2.57
2141 6497 1.270678 GGGACGCCAAAACAGAGTAGT 60.271 52.381 0.00 0.00 0.00 2.73
2142 6498 2.490991 GGACGCCAAAACAGAGTAGTT 58.509 47.619 0.00 0.00 0.00 2.24
2277 6793 9.993454 TGATTCTCAATTGACTTATCATCCTAG 57.007 33.333 3.38 0.00 33.85 3.02
2279 6795 7.609097 TCTCAATTGACTTATCATCCTAGCT 57.391 36.000 3.38 0.00 33.85 3.32
2296 6812 8.695456 CATCCTAGCTTTTGTAAATAATGGGTT 58.305 33.333 0.00 0.00 0.00 4.11
2321 6837 7.810766 TTTTTAAACTTGAAAGAGCACACAG 57.189 32.000 0.00 0.00 0.00 3.66
2337 6853 5.237344 AGCACACAGTTCAGTTATTTCACTC 59.763 40.000 0.00 0.00 0.00 3.51
2380 6896 2.831685 AAGCCTGTGTCGATGTAACA 57.168 45.000 0.00 0.00 0.00 2.41
2501 7276 7.907214 TTGTAGAAGCAGTTATCTTTCTTCC 57.093 36.000 0.00 0.00 34.27 3.46
2502 7277 7.004555 TGTAGAAGCAGTTATCTTTCTTCCA 57.995 36.000 0.00 0.00 34.27 3.53
2503 7278 7.450074 TGTAGAAGCAGTTATCTTTCTTCCAA 58.550 34.615 0.00 0.00 34.27 3.53
2504 7279 8.103305 TGTAGAAGCAGTTATCTTTCTTCCAAT 58.897 33.333 0.00 0.00 34.27 3.16
2505 7280 8.951243 GTAGAAGCAGTTATCTTTCTTCCAATT 58.049 33.333 0.00 0.00 34.27 2.32
2608 7385 7.914346 GTCTATGCTTGATTTTCTCCTTCATTG 59.086 37.037 0.00 0.00 0.00 2.82
2691 7475 0.385223 CAGCAACAACTCGCAGCTTC 60.385 55.000 0.00 0.00 32.35 3.86
2800 7587 2.291043 GGTTCCTCGGCTCCTCCAA 61.291 63.158 0.00 0.00 34.01 3.53
2849 7636 4.072088 GCGAACAACCGGCTCACG 62.072 66.667 0.00 2.49 43.80 4.35
2921 7708 3.025262 GAGTGATAACTTCCTCTCGGGT 58.975 50.000 0.00 0.00 36.25 5.28
3055 7842 4.002982 ACTCTTGCGCATAACAATCTCAA 58.997 39.130 12.75 0.00 0.00 3.02
3074 7861 2.591715 GGTGTTGTGCCAGCGACT 60.592 61.111 0.00 0.00 0.00 4.18
3095 7882 2.572556 TCTAGTCCGACTCAGAGGTCTT 59.427 50.000 3.74 0.00 34.38 3.01
3096 7883 1.540267 AGTCCGACTCAGAGGTCTTG 58.460 55.000 1.53 0.00 34.38 3.02
3149 7936 1.598130 GCCTGTTCCAGTGTTCGCT 60.598 57.895 0.00 0.00 0.00 4.93
3151 7938 0.249868 CCTGTTCCAGTGTTCGCTGA 60.250 55.000 13.92 0.00 38.70 4.26
3203 7990 0.530744 TCGATGGGAGTTTCTGTCGG 59.469 55.000 0.00 0.00 0.00 4.79
3226 8019 0.250858 CAGCCCAGGTCATGTGACAA 60.251 55.000 14.47 0.00 46.47 3.18
3247 8227 1.468224 CCGTGTCGAGTCCTTCATCAG 60.468 57.143 0.00 0.00 0.00 2.90
3327 8307 4.408821 GTGATGGGTGGCTCGGCA 62.409 66.667 0.00 0.00 0.00 5.69
3368 8348 0.673644 CCATCACCGGTGTCAACCTC 60.674 60.000 32.74 0.00 45.17 3.85
3397 8378 1.004440 GGCTCATCGGCACTATCCC 60.004 63.158 0.00 0.00 38.25 3.85
3490 8471 0.874175 CGTTCTATCGCGGGATTGCA 60.874 55.000 20.86 6.21 34.00 4.08
3499 8480 0.391661 GCGGGATTGCAGTCTCTCAA 60.392 55.000 7.56 0.00 34.15 3.02
3503 8484 2.290577 GGGATTGCAGTCTCTCAAGGTT 60.291 50.000 9.27 0.00 0.00 3.50
3516 8497 0.454620 CAAGGTTCTCGACGTCTCCG 60.455 60.000 14.70 0.70 40.83 4.63
3680 8661 6.980593 TGTTCTGTTTGTTTGATTAGATGGG 58.019 36.000 0.00 0.00 0.00 4.00
3761 8771 2.780065 TGTGCTGCAATTGAACTGAC 57.220 45.000 10.34 0.00 0.00 3.51
3766 8776 8.726623 TTGTGCTGCAATTGAACTGACAAGTT 62.727 38.462 10.34 0.00 39.68 2.66
3945 8956 3.270877 GTGTCCCACACCAAGCTAATAG 58.729 50.000 0.00 0.00 43.05 1.73
3974 8985 2.149383 AGGCTCAGGTTCTGGTGCA 61.149 57.895 12.65 0.00 34.84 4.57
3987 8998 3.145286 TCTGGTGCATTTTGAACATCGA 58.855 40.909 0.00 0.00 0.00 3.59
3988 8999 3.758023 TCTGGTGCATTTTGAACATCGAT 59.242 39.130 0.00 0.00 0.00 3.59
4008 9019 4.509600 CGATTATCCAGCAGAAGGAGAAAC 59.490 45.833 0.00 0.00 39.54 2.78
4027 9297 7.251704 AGAAACTCGGTTGCAATATATCTTG 57.748 36.000 0.59 0.00 0.00 3.02
4071 9341 4.406943 CTTCATTTAAGAACTTGCGCTCC 58.593 43.478 9.73 0.00 37.38 4.70
4073 9343 3.818210 TCATTTAAGAACTTGCGCTCCAA 59.182 39.130 9.73 0.00 0.00 3.53
4174 9444 0.798776 GTGCTCATTTGACCACTCCG 59.201 55.000 0.00 0.00 30.16 4.63
4195 9465 3.077359 GTGATGGACTCAGTTTCTTGGG 58.923 50.000 0.00 0.00 33.51 4.12
4196 9466 2.087646 GATGGACTCAGTTTCTTGGGC 58.912 52.381 0.00 0.00 0.00 5.36
4197 9467 0.843309 TGGACTCAGTTTCTTGGGCA 59.157 50.000 0.00 0.00 0.00 5.36
4198 9468 1.214175 TGGACTCAGTTTCTTGGGCAA 59.786 47.619 0.00 0.00 0.00 4.52
4199 9469 1.882623 GGACTCAGTTTCTTGGGCAAG 59.117 52.381 0.00 0.00 39.71 4.01
4200 9470 2.576615 GACTCAGTTTCTTGGGCAAGT 58.423 47.619 0.00 0.00 39.38 3.16
4201 9471 2.952310 GACTCAGTTTCTTGGGCAAGTT 59.048 45.455 0.00 0.00 39.38 2.66
4202 9472 2.689983 ACTCAGTTTCTTGGGCAAGTTG 59.310 45.455 0.00 0.00 39.38 3.16
4203 9473 1.408702 TCAGTTTCTTGGGCAAGTTGC 59.591 47.619 19.87 19.87 44.08 4.17
4222 9492 1.608055 CAGGTGTGCTCATTTGACCA 58.392 50.000 0.00 0.00 0.00 4.02
4223 9493 1.267806 CAGGTGTGCTCATTTGACCAC 59.732 52.381 0.00 0.07 32.67 4.16
4224 9494 1.143684 AGGTGTGCTCATTTGACCACT 59.856 47.619 7.35 0.00 33.11 4.00
4225 9495 1.537202 GGTGTGCTCATTTGACCACTC 59.463 52.381 7.35 4.27 33.11 3.51
4226 9496 1.537202 GTGTGCTCATTTGACCACTCC 59.463 52.381 7.35 0.00 33.11 3.85
4227 9497 0.798776 GTGCTCATTTGACCACTCCG 59.201 55.000 0.00 0.00 30.16 4.63
4228 9498 0.396435 TGCTCATTTGACCACTCCGT 59.604 50.000 0.00 0.00 0.00 4.69
4229 9499 0.798776 GCTCATTTGACCACTCCGTG 59.201 55.000 0.00 0.00 0.00 4.94
4230 9500 1.608025 GCTCATTTGACCACTCCGTGA 60.608 52.381 0.00 0.00 35.23 4.35
4231 9501 2.936993 GCTCATTTGACCACTCCGTGAT 60.937 50.000 0.00 0.00 35.23 3.06
4232 9502 2.674852 CTCATTTGACCACTCCGTGATG 59.325 50.000 0.00 0.00 35.23 3.07
4233 9503 1.739466 CATTTGACCACTCCGTGATGG 59.261 52.381 0.00 0.00 42.13 3.51
4235 9505 0.320374 TTGACCACTCCGTGATGGAC 59.680 55.000 3.31 0.00 43.74 4.02
4236 9506 0.541998 TGACCACTCCGTGATGGACT 60.542 55.000 3.31 0.00 43.74 3.85
4237 9507 0.173708 GACCACTCCGTGATGGACTC 59.826 60.000 3.31 0.00 43.74 3.36
4238 9508 0.541998 ACCACTCCGTGATGGACTCA 60.542 55.000 3.31 0.00 43.74 3.41
4239 9509 0.174389 CCACTCCGTGATGGACTCAG 59.826 60.000 0.00 0.00 43.74 3.35
4240 9510 0.891373 CACTCCGTGATGGACTCAGT 59.109 55.000 0.00 0.00 43.74 3.41
4241 9511 1.273606 CACTCCGTGATGGACTCAGTT 59.726 52.381 0.00 0.00 43.74 3.16
4242 9512 1.971357 ACTCCGTGATGGACTCAGTTT 59.029 47.619 0.00 0.00 43.74 2.66
4243 9513 2.028930 ACTCCGTGATGGACTCAGTTTC 60.029 50.000 0.00 0.00 43.74 2.78
4244 9514 2.232452 CTCCGTGATGGACTCAGTTTCT 59.768 50.000 0.00 0.00 43.74 2.52
4245 9515 2.632996 TCCGTGATGGACTCAGTTTCTT 59.367 45.455 0.00 0.00 43.74 2.52
4246 9516 2.738846 CCGTGATGGACTCAGTTTCTTG 59.261 50.000 0.00 0.00 42.00 3.02
4247 9517 2.738846 CGTGATGGACTCAGTTTCTTGG 59.261 50.000 0.00 0.00 33.51 3.61
4341 9611 3.806949 TCAGAATAAGGTGCAAAGGGT 57.193 42.857 0.00 0.00 0.00 4.34
4363 9633 8.717717 AGGGTATTCATCTTCTTGATCACATAA 58.282 33.333 0.00 0.00 32.05 1.90
4436 9706 0.183731 GGATTCTTCCCCGAAGCCAT 59.816 55.000 3.21 0.00 46.12 4.40
4438 9708 2.158667 GGATTCTTCCCCGAAGCCATAA 60.159 50.000 3.21 0.00 46.12 1.90
4452 9722 5.163622 CGAAGCCATAACCACATGAAGAAAT 60.164 40.000 0.00 0.00 0.00 2.17
4470 9740 0.478072 ATGACACTTGGCAGGAACCA 59.522 50.000 2.65 0.00 35.91 3.67
4495 9765 3.867493 GCCTTCCAAAGCTTATCAAATGC 59.133 43.478 0.00 0.00 0.00 3.56
4503 9773 5.841957 AAGCTTATCAAATGCTAAGTGGG 57.158 39.130 0.00 0.00 35.85 4.61
4579 9849 3.553109 GGTTCCAGACCCAGCTAAC 57.447 57.895 0.00 0.00 43.06 2.34
4601 9871 2.622436 GTGTCCTCAGTATCTGGTTGC 58.378 52.381 0.00 0.00 31.51 4.17
4643 9913 0.308993 GCCAGACTTGTGTGAGTTGC 59.691 55.000 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 4451 2.202570 CTACGAAGGACACGGCGG 60.203 66.667 13.24 2.35 34.93 6.13
123 4466 3.610619 ATGCTGCGTGTGCTGGCTA 62.611 57.895 0.00 0.00 43.34 3.93
201 4544 3.822192 CGGTGATCGAGGACGGCA 61.822 66.667 0.00 0.00 42.43 5.69
669 5019 6.631636 GTCGTTTCCAATTTTGTAACAGAGAC 59.368 38.462 0.00 0.00 0.00 3.36
747 5097 1.742880 GCGCTTGTGCATCTGGAGA 60.743 57.895 0.00 0.00 39.64 3.71
828 5178 3.999046 CAGCATGCACATAGTAGATGGA 58.001 45.455 21.98 0.00 0.00 3.41
939 5289 4.785453 GCGGCCAGGAGGACCAAG 62.785 72.222 2.24 0.00 41.31 3.61
969 5319 3.422303 TTGACGCAGACGCATGCC 61.422 61.111 13.15 0.00 45.53 4.40
971 5321 2.094539 CGTTGACGCAGACGCATG 59.905 61.111 0.00 0.00 45.53 4.06
1044 5394 2.456119 GGATGAGTCGTTGCGCCAG 61.456 63.158 4.18 0.00 0.00 4.85
1048 5398 2.885644 CGGGGATGAGTCGTTGCG 60.886 66.667 0.00 0.00 0.00 4.85
1089 5439 3.425713 CCACGCTCATTGCACGCT 61.426 61.111 0.00 0.00 43.06 5.07
1091 5441 2.741985 TCCCACGCTCATTGCACG 60.742 61.111 0.00 0.00 43.06 5.34
1152 5502 4.101448 GCCATGTCCCTCGGCAGT 62.101 66.667 0.00 0.00 45.52 4.40
1180 5530 1.376466 GCAGGTCCAGCTCCTTCAA 59.624 57.895 0.00 0.00 32.37 2.69
1227 5577 2.182030 CGGAGGAAGACGGTGCTC 59.818 66.667 0.00 0.00 35.37 4.26
1307 5657 1.594194 TACCTGCAGCAATTTGGCGG 61.594 55.000 8.66 0.00 39.27 6.13
1311 5661 4.813027 ACTGAATTACCTGCAGCAATTTG 58.187 39.130 19.54 17.41 33.03 2.32
1313 5663 4.523943 TGAACTGAATTACCTGCAGCAATT 59.476 37.500 18.95 18.95 33.03 2.32
1316 5666 3.076621 CTGAACTGAATTACCTGCAGCA 58.923 45.455 8.66 0.00 33.03 4.41
1329 5679 0.319900 GCGGCTGAGAACTGAACTGA 60.320 55.000 0.00 0.00 0.00 3.41
1330 5680 0.320247 AGCGGCTGAGAACTGAACTG 60.320 55.000 0.00 0.00 0.00 3.16
1331 5681 1.067495 GTAGCGGCTGAGAACTGAACT 60.067 52.381 13.86 0.00 0.00 3.01
1332 5682 1.067495 AGTAGCGGCTGAGAACTGAAC 60.067 52.381 13.86 0.00 0.00 3.18
1334 5684 1.257743 AAGTAGCGGCTGAGAACTGA 58.742 50.000 13.86 0.00 0.00 3.41
1335 5685 1.728971 CAAAGTAGCGGCTGAGAACTG 59.271 52.381 13.86 0.00 0.00 3.16
1336 5686 1.344763 ACAAAGTAGCGGCTGAGAACT 59.655 47.619 13.86 4.91 0.00 3.01
1337 5687 1.797025 ACAAAGTAGCGGCTGAGAAC 58.203 50.000 13.86 2.22 0.00 3.01
1338 5688 2.353406 GGTACAAAGTAGCGGCTGAGAA 60.353 50.000 13.86 0.00 0.00 2.87
1339 5689 1.203994 GGTACAAAGTAGCGGCTGAGA 59.796 52.381 13.86 0.00 0.00 3.27
1340 5690 1.641577 GGTACAAAGTAGCGGCTGAG 58.358 55.000 13.86 0.20 0.00 3.35
1341 5691 0.108992 CGGTACAAAGTAGCGGCTGA 60.109 55.000 13.86 0.00 35.13 4.26
1342 5692 0.389426 ACGGTACAAAGTAGCGGCTG 60.389 55.000 25.86 0.00 42.00 4.85
1343 5693 0.108945 GACGGTACAAAGTAGCGGCT 60.109 55.000 25.86 7.98 42.52 5.52
1344 5694 0.108945 AGACGGTACAAAGTAGCGGC 60.109 55.000 25.86 24.36 45.74 6.53
1345 5695 1.200716 TCAGACGGTACAAAGTAGCGG 59.799 52.381 25.86 13.01 42.00 5.52
1346 5696 2.624316 TCAGACGGTACAAAGTAGCG 57.376 50.000 22.30 22.30 43.16 4.26
1347 5697 4.373348 AGATCAGACGGTACAAAGTAGC 57.627 45.455 0.00 0.00 0.00 3.58
1348 5698 6.680874 AGTAGATCAGACGGTACAAAGTAG 57.319 41.667 0.00 0.00 0.00 2.57
1411 5761 3.427233 GGCACATTGAGCAACTGAGAATC 60.427 47.826 8.34 0.00 0.00 2.52
1439 5789 8.662141 GCAATTCATTCATTCAAGTAAAGCATT 58.338 29.630 0.00 0.00 0.00 3.56
1440 5790 8.038944 AGCAATTCATTCATTCAAGTAAAGCAT 58.961 29.630 0.00 0.00 0.00 3.79
1446 5796 7.553760 TGAGCTAGCAATTCATTCATTCAAGTA 59.446 33.333 18.83 0.00 0.00 2.24
1464 5814 3.311486 AGTGAACTGAAGTGAGCTAGC 57.689 47.619 6.62 6.62 0.00 3.42
1465 5815 5.866633 CCTTAAGTGAACTGAAGTGAGCTAG 59.133 44.000 6.78 0.00 33.42 3.42
1466 5816 5.538813 TCCTTAAGTGAACTGAAGTGAGCTA 59.461 40.000 6.78 0.00 33.42 3.32
1496 5846 2.095969 TGAAACGTTTTGGAGCGCTATG 60.096 45.455 11.50 1.48 32.23 2.23
1506 5856 4.919677 AAACTTTGCCTGAAACGTTTTG 57.080 36.364 15.89 11.02 28.66 2.44
1537 5887 4.643334 AGTTGTTTTTACACAGGGAACTCC 59.357 41.667 0.00 0.00 40.21 3.85
1538 5888 5.830000 AGTTGTTTTTACACAGGGAACTC 57.170 39.130 0.00 0.00 40.21 3.01
1539 5889 5.826208 CCTAGTTGTTTTTACACAGGGAACT 59.174 40.000 0.00 0.00 46.44 3.01
1540 5890 5.824097 TCCTAGTTGTTTTTACACAGGGAAC 59.176 40.000 0.00 0.00 0.00 3.62
1541 5891 5.824097 GTCCTAGTTGTTTTTACACAGGGAA 59.176 40.000 0.00 0.00 0.00 3.97
1542 5892 5.131475 AGTCCTAGTTGTTTTTACACAGGGA 59.869 40.000 0.00 0.00 0.00 4.20
1543 5893 5.374071 AGTCCTAGTTGTTTTTACACAGGG 58.626 41.667 0.00 0.00 0.00 4.45
1544 5894 6.053005 TGAGTCCTAGTTGTTTTTACACAGG 58.947 40.000 0.00 0.00 0.00 4.00
1545 5895 7.548196 TTGAGTCCTAGTTGTTTTTACACAG 57.452 36.000 0.00 0.00 0.00 3.66
1546 5896 8.514330 AATTGAGTCCTAGTTGTTTTTACACA 57.486 30.769 0.00 0.00 0.00 3.72
1547 5897 9.797556 AAAATTGAGTCCTAGTTGTTTTTACAC 57.202 29.630 0.00 0.00 0.00 2.90
1548 5898 9.796120 CAAAATTGAGTCCTAGTTGTTTTTACA 57.204 29.630 0.00 0.00 0.00 2.41
1549 5899 8.752254 GCAAAATTGAGTCCTAGTTGTTTTTAC 58.248 33.333 0.00 0.00 0.00 2.01
1550 5900 8.691797 AGCAAAATTGAGTCCTAGTTGTTTTTA 58.308 29.630 0.00 0.00 0.00 1.52
1551 5901 7.555965 AGCAAAATTGAGTCCTAGTTGTTTTT 58.444 30.769 0.00 0.00 0.00 1.94
1552 5902 7.112452 AGCAAAATTGAGTCCTAGTTGTTTT 57.888 32.000 0.00 0.00 0.00 2.43
1553 5903 6.715347 AGCAAAATTGAGTCCTAGTTGTTT 57.285 33.333 0.00 0.00 0.00 2.83
1554 5904 6.321181 TGAAGCAAAATTGAGTCCTAGTTGTT 59.679 34.615 0.00 0.00 0.00 2.83
1555 5905 5.827797 TGAAGCAAAATTGAGTCCTAGTTGT 59.172 36.000 0.00 0.00 0.00 3.32
1556 5906 6.205464 TCTGAAGCAAAATTGAGTCCTAGTTG 59.795 38.462 0.00 0.00 0.00 3.16
1557 5907 6.299141 TCTGAAGCAAAATTGAGTCCTAGTT 58.701 36.000 0.00 0.00 0.00 2.24
1558 5908 5.869579 TCTGAAGCAAAATTGAGTCCTAGT 58.130 37.500 0.00 0.00 0.00 2.57
1559 5909 6.373774 ACATCTGAAGCAAAATTGAGTCCTAG 59.626 38.462 0.00 0.00 0.00 3.02
1560 5910 6.240894 ACATCTGAAGCAAAATTGAGTCCTA 58.759 36.000 0.00 0.00 0.00 2.94
1561 5911 5.075493 ACATCTGAAGCAAAATTGAGTCCT 58.925 37.500 0.00 0.00 0.00 3.85
1562 5912 5.382618 ACATCTGAAGCAAAATTGAGTCC 57.617 39.130 0.00 0.00 0.00 3.85
1563 5913 6.471519 GCATACATCTGAAGCAAAATTGAGTC 59.528 38.462 0.00 0.00 0.00 3.36
1564 5914 6.152323 AGCATACATCTGAAGCAAAATTGAGT 59.848 34.615 0.00 0.00 0.00 3.41
1565 5915 6.561614 AGCATACATCTGAAGCAAAATTGAG 58.438 36.000 0.00 0.00 0.00 3.02
1594 5944 5.188434 CACCCAAATCTGCTATCTTTCAGA 58.812 41.667 0.00 0.00 42.72 3.27
1716 6067 1.210478 CAAGTATACTGTGCCAGCCCT 59.790 52.381 6.06 0.00 34.37 5.19
1717 6068 1.065418 ACAAGTATACTGTGCCAGCCC 60.065 52.381 6.06 0.00 34.37 5.19
1728 6079 7.596995 GCACTCCTCAATGATCTACAAGTATAC 59.403 40.741 0.00 0.00 0.00 1.47
1761 6115 5.107298 GCAGAGTTCAGAATTGTGACAGTAC 60.107 44.000 4.50 0.99 0.00 2.73
1762 6116 4.991056 GCAGAGTTCAGAATTGTGACAGTA 59.009 41.667 4.50 0.00 0.00 2.74
1763 6117 3.812053 GCAGAGTTCAGAATTGTGACAGT 59.188 43.478 4.50 0.41 0.00 3.55
1764 6118 3.811497 TGCAGAGTTCAGAATTGTGACAG 59.189 43.478 4.50 0.00 0.00 3.51
1796 6151 2.551721 CCTCTTCTGCCTTCTTCTGCAA 60.552 50.000 0.00 0.00 36.98 4.08
1797 6152 1.002888 CCTCTTCTGCCTTCTTCTGCA 59.997 52.381 0.00 0.00 35.86 4.41
1798 6153 1.678425 CCCTCTTCTGCCTTCTTCTGC 60.678 57.143 0.00 0.00 0.00 4.26
1799 6154 1.905215 TCCCTCTTCTGCCTTCTTCTG 59.095 52.381 0.00 0.00 0.00 3.02
1800 6155 1.905894 GTCCCTCTTCTGCCTTCTTCT 59.094 52.381 0.00 0.00 0.00 2.85
1801 6156 1.905894 AGTCCCTCTTCTGCCTTCTTC 59.094 52.381 0.00 0.00 0.00 2.87
1802 6157 1.905894 GAGTCCCTCTTCTGCCTTCTT 59.094 52.381 0.00 0.00 0.00 2.52
1803 6158 1.567357 GAGTCCCTCTTCTGCCTTCT 58.433 55.000 0.00 0.00 0.00 2.85
1805 6160 0.251832 TCGAGTCCCTCTTCTGCCTT 60.252 55.000 0.00 0.00 0.00 4.35
1806 6161 0.032615 ATCGAGTCCCTCTTCTGCCT 60.033 55.000 0.00 0.00 0.00 4.75
1807 6162 0.827368 AATCGAGTCCCTCTTCTGCC 59.173 55.000 0.00 0.00 0.00 4.85
1808 6163 3.802948 TTAATCGAGTCCCTCTTCTGC 57.197 47.619 0.00 0.00 0.00 4.26
1809 6164 5.782893 AGATTAATCGAGTCCCTCTTCTG 57.217 43.478 9.78 0.00 0.00 3.02
1810 6165 5.303333 GGAAGATTAATCGAGTCCCTCTTCT 59.697 44.000 21.11 3.85 38.02 2.85
1811 6166 5.303333 AGGAAGATTAATCGAGTCCCTCTTC 59.697 44.000 22.24 17.00 37.48 2.87
1814 6169 5.303333 AGAAGGAAGATTAATCGAGTCCCTC 59.697 44.000 22.24 20.03 31.55 4.30
1815 6170 5.212745 AGAAGGAAGATTAATCGAGTCCCT 58.787 41.667 22.24 15.02 31.55 4.20
1816 6171 5.534407 GAGAAGGAAGATTAATCGAGTCCC 58.466 45.833 22.24 14.75 31.55 4.46
1817 6172 5.216648 CGAGAAGGAAGATTAATCGAGTCC 58.783 45.833 20.02 20.02 0.00 3.85
1818 6173 5.683743 CACGAGAAGGAAGATTAATCGAGTC 59.316 44.000 9.78 8.63 33.23 3.36
1819 6174 5.357314 TCACGAGAAGGAAGATTAATCGAGT 59.643 40.000 9.78 0.00 33.23 4.18
1820 6175 5.822278 TCACGAGAAGGAAGATTAATCGAG 58.178 41.667 9.78 0.00 33.23 4.04
1821 6176 5.830000 TCACGAGAAGGAAGATTAATCGA 57.170 39.130 9.78 0.00 33.23 3.59
1822 6177 8.575565 TTAATCACGAGAAGGAAGATTAATCG 57.424 34.615 9.78 0.00 36.68 3.34
1847 6202 7.595819 TCATCGCCCCAAGATTATTATTTTT 57.404 32.000 0.00 0.00 0.00 1.94
1848 6203 7.781324 ATCATCGCCCCAAGATTATTATTTT 57.219 32.000 0.00 0.00 0.00 1.82
1849 6204 7.888021 TGTATCATCGCCCCAAGATTATTATTT 59.112 33.333 0.00 0.00 0.00 1.40
1850 6205 7.402054 TGTATCATCGCCCCAAGATTATTATT 58.598 34.615 0.00 0.00 0.00 1.40
1851 6206 6.957631 TGTATCATCGCCCCAAGATTATTAT 58.042 36.000 0.00 0.00 0.00 1.28
1852 6207 6.367374 TGTATCATCGCCCCAAGATTATTA 57.633 37.500 0.00 0.00 0.00 0.98
1853 6208 5.241403 TGTATCATCGCCCCAAGATTATT 57.759 39.130 0.00 0.00 0.00 1.40
1854 6209 4.908601 TGTATCATCGCCCCAAGATTAT 57.091 40.909 0.00 0.00 0.00 1.28
1855 6210 4.504864 CCTTGTATCATCGCCCCAAGATTA 60.505 45.833 0.00 0.00 35.64 1.75
1856 6211 3.480470 CTTGTATCATCGCCCCAAGATT 58.520 45.455 0.00 0.00 35.64 2.40
1857 6212 2.224621 CCTTGTATCATCGCCCCAAGAT 60.225 50.000 0.00 0.00 35.64 2.40
1858 6213 1.140852 CCTTGTATCATCGCCCCAAGA 59.859 52.381 0.00 0.00 35.64 3.02
1859 6214 1.597742 CCTTGTATCATCGCCCCAAG 58.402 55.000 0.00 0.00 33.88 3.61
1860 6215 0.182537 CCCTTGTATCATCGCCCCAA 59.817 55.000 0.00 0.00 0.00 4.12
1861 6216 1.705002 CCCCTTGTATCATCGCCCCA 61.705 60.000 0.00 0.00 0.00 4.96
1862 6217 1.073199 CCCCTTGTATCATCGCCCC 59.927 63.158 0.00 0.00 0.00 5.80
1863 6218 0.182775 AACCCCTTGTATCATCGCCC 59.817 55.000 0.00 0.00 0.00 6.13
1864 6219 2.922740 TAACCCCTTGTATCATCGCC 57.077 50.000 0.00 0.00 0.00 5.54
1865 6220 4.134563 ACATTAACCCCTTGTATCATCGC 58.865 43.478 0.00 0.00 0.00 4.58
1866 6221 7.795482 TTAACATTAACCCCTTGTATCATCG 57.205 36.000 0.00 0.00 0.00 3.84
1873 6228 8.098286 GCCTTTTTATTAACATTAACCCCTTGT 58.902 33.333 0.00 0.00 0.00 3.16
1874 6229 8.318412 AGCCTTTTTATTAACATTAACCCCTTG 58.682 33.333 0.00 0.00 0.00 3.61
1875 6230 8.444010 AGCCTTTTTATTAACATTAACCCCTT 57.556 30.769 0.00 0.00 0.00 3.95
1876 6231 8.974238 GTAGCCTTTTTATTAACATTAACCCCT 58.026 33.333 0.00 0.00 0.00 4.79
1877 6232 8.974238 AGTAGCCTTTTTATTAACATTAACCCC 58.026 33.333 0.00 0.00 0.00 4.95
1878 6233 9.797556 CAGTAGCCTTTTTATTAACATTAACCC 57.202 33.333 0.00 0.00 0.00 4.11
1879 6234 9.797556 CCAGTAGCCTTTTTATTAACATTAACC 57.202 33.333 0.00 0.00 0.00 2.85
1882 6237 9.969001 AGTCCAGTAGCCTTTTTATTAACATTA 57.031 29.630 0.00 0.00 0.00 1.90
1883 6238 8.879427 AGTCCAGTAGCCTTTTTATTAACATT 57.121 30.769 0.00 0.00 0.00 2.71
1884 6239 8.879427 AAGTCCAGTAGCCTTTTTATTAACAT 57.121 30.769 0.00 0.00 0.00 2.71
1885 6240 8.573035 CAAAGTCCAGTAGCCTTTTTATTAACA 58.427 33.333 0.00 0.00 0.00 2.41
1886 6241 8.573885 ACAAAGTCCAGTAGCCTTTTTATTAAC 58.426 33.333 0.00 0.00 0.00 2.01
1887 6242 8.700439 ACAAAGTCCAGTAGCCTTTTTATTAA 57.300 30.769 0.00 0.00 0.00 1.40
1888 6243 8.700439 AACAAAGTCCAGTAGCCTTTTTATTA 57.300 30.769 0.00 0.00 0.00 0.98
1889 6244 7.597288 AACAAAGTCCAGTAGCCTTTTTATT 57.403 32.000 0.00 0.00 0.00 1.40
1890 6245 8.700439 TTAACAAAGTCCAGTAGCCTTTTTAT 57.300 30.769 0.00 0.00 0.00 1.40
1891 6246 7.255346 GCTTAACAAAGTCCAGTAGCCTTTTTA 60.255 37.037 0.00 0.00 0.00 1.52
1892 6247 6.461092 GCTTAACAAAGTCCAGTAGCCTTTTT 60.461 38.462 0.00 0.00 0.00 1.94
1893 6248 5.009710 GCTTAACAAAGTCCAGTAGCCTTTT 59.990 40.000 0.00 0.00 0.00 2.27
1894 6249 4.519350 GCTTAACAAAGTCCAGTAGCCTTT 59.481 41.667 0.00 0.00 0.00 3.11
1895 6250 4.072839 GCTTAACAAAGTCCAGTAGCCTT 58.927 43.478 0.00 0.00 0.00 4.35
1896 6251 3.072476 TGCTTAACAAAGTCCAGTAGCCT 59.928 43.478 0.00 0.00 0.00 4.58
1897 6252 3.408634 TGCTTAACAAAGTCCAGTAGCC 58.591 45.455 0.00 0.00 0.00 3.93
1898 6253 4.320275 GGTTGCTTAACAAAGTCCAGTAGC 60.320 45.833 0.00 0.00 40.82 3.58
1899 6254 4.819630 TGGTTGCTTAACAAAGTCCAGTAG 59.180 41.667 0.00 0.00 40.82 2.57
1900 6255 4.783055 TGGTTGCTTAACAAAGTCCAGTA 58.217 39.130 0.00 0.00 40.82 2.74
1901 6256 3.626930 TGGTTGCTTAACAAAGTCCAGT 58.373 40.909 0.00 0.00 40.82 4.00
1902 6257 4.549458 CATGGTTGCTTAACAAAGTCCAG 58.451 43.478 0.00 0.00 40.82 3.86
1903 6258 3.243704 GCATGGTTGCTTAACAAAGTCCA 60.244 43.478 0.00 0.00 45.77 4.02
1904 6259 3.317150 GCATGGTTGCTTAACAAAGTCC 58.683 45.455 0.00 0.00 45.77 3.85
1917 6272 6.632909 TGGATAAATCAAGAAAGCATGGTTG 58.367 36.000 11.56 0.00 0.00 3.77
1918 6273 6.855763 TGGATAAATCAAGAAAGCATGGTT 57.144 33.333 3.82 3.82 0.00 3.67
1919 6274 6.438425 ACTTGGATAAATCAAGAAAGCATGGT 59.562 34.615 10.30 0.00 42.94 3.55
1920 6275 6.870769 ACTTGGATAAATCAAGAAAGCATGG 58.129 36.000 10.30 0.00 42.94 3.66
1921 6276 8.461222 TGTACTTGGATAAATCAAGAAAGCATG 58.539 33.333 10.30 0.00 42.94 4.06
1922 6277 8.579850 TGTACTTGGATAAATCAAGAAAGCAT 57.420 30.769 10.30 0.00 42.94 3.79
1923 6278 7.994425 TGTACTTGGATAAATCAAGAAAGCA 57.006 32.000 10.30 2.15 42.94 3.91
1930 6285 9.913310 TGACCATAATGTACTTGGATAAATCAA 57.087 29.630 10.39 0.00 34.52 2.57
1931 6286 9.913310 TTGACCATAATGTACTTGGATAAATCA 57.087 29.630 10.39 2.94 34.52 2.57
1933 6288 9.920946 ACTTGACCATAATGTACTTGGATAAAT 57.079 29.630 10.39 0.00 34.52 1.40
1934 6289 9.747898 AACTTGACCATAATGTACTTGGATAAA 57.252 29.630 10.39 3.36 34.52 1.40
1935 6290 9.747898 AAACTTGACCATAATGTACTTGGATAA 57.252 29.630 10.39 5.58 34.52 1.75
1936 6291 9.747898 AAAACTTGACCATAATGTACTTGGATA 57.252 29.630 10.39 0.00 34.52 2.59
1937 6292 8.650143 AAAACTTGACCATAATGTACTTGGAT 57.350 30.769 10.39 0.00 34.52 3.41
1938 6293 9.747898 ATAAAACTTGACCATAATGTACTTGGA 57.252 29.630 10.39 0.00 34.52 3.53
1951 6306 9.378551 CAGCTATACACTTATAAAACTTGACCA 57.621 33.333 0.00 0.00 0.00 4.02
1952 6307 8.336080 GCAGCTATACACTTATAAAACTTGACC 58.664 37.037 0.00 0.00 0.00 4.02
1953 6308 8.056571 CGCAGCTATACACTTATAAAACTTGAC 58.943 37.037 0.00 0.00 0.00 3.18
1954 6309 7.977293 TCGCAGCTATACACTTATAAAACTTGA 59.023 33.333 0.00 0.00 0.00 3.02
1955 6310 8.056571 GTCGCAGCTATACACTTATAAAACTTG 58.943 37.037 0.00 0.00 0.00 3.16
1956 6311 7.762615 TGTCGCAGCTATACACTTATAAAACTT 59.237 33.333 0.00 0.00 0.00 2.66
1957 6312 7.262772 TGTCGCAGCTATACACTTATAAAACT 58.737 34.615 0.00 0.00 0.00 2.66
1958 6313 7.459394 TGTCGCAGCTATACACTTATAAAAC 57.541 36.000 0.00 0.00 0.00 2.43
1959 6314 8.481974 TTTGTCGCAGCTATACACTTATAAAA 57.518 30.769 0.00 0.00 0.00 1.52
1960 6315 8.481974 TTTTGTCGCAGCTATACACTTATAAA 57.518 30.769 0.00 0.00 0.00 1.40
1961 6316 8.547894 CATTTTGTCGCAGCTATACACTTATAA 58.452 33.333 0.00 0.00 0.00 0.98
1962 6317 7.709182 ACATTTTGTCGCAGCTATACACTTATA 59.291 33.333 0.00 0.00 0.00 0.98
1963 6318 6.538742 ACATTTTGTCGCAGCTATACACTTAT 59.461 34.615 0.00 0.00 0.00 1.73
1964 6319 5.872617 ACATTTTGTCGCAGCTATACACTTA 59.127 36.000 0.00 0.00 0.00 2.24
1965 6320 4.695455 ACATTTTGTCGCAGCTATACACTT 59.305 37.500 0.00 0.00 0.00 3.16
1966 6321 4.253685 ACATTTTGTCGCAGCTATACACT 58.746 39.130 0.00 0.00 0.00 3.55
1967 6322 4.600012 ACATTTTGTCGCAGCTATACAC 57.400 40.909 0.00 0.00 0.00 2.90
1968 6323 5.049060 ACAAACATTTTGTCGCAGCTATACA 60.049 36.000 0.00 0.00 0.00 2.29
1969 6324 5.390613 ACAAACATTTTGTCGCAGCTATAC 58.609 37.500 0.00 0.00 0.00 1.47
1970 6325 5.621197 ACAAACATTTTGTCGCAGCTATA 57.379 34.783 0.00 0.00 0.00 1.31
1971 6326 4.503741 ACAAACATTTTGTCGCAGCTAT 57.496 36.364 0.00 0.00 0.00 2.97
1972 6327 3.980646 ACAAACATTTTGTCGCAGCTA 57.019 38.095 0.00 0.00 0.00 3.32
1973 6328 2.869233 ACAAACATTTTGTCGCAGCT 57.131 40.000 0.00 0.00 0.00 4.24
1974 6329 4.225984 TCATACAAACATTTTGTCGCAGC 58.774 39.130 7.54 0.00 34.11 5.25
1975 6330 5.858049 ACATCATACAAACATTTTGTCGCAG 59.142 36.000 7.54 0.17 34.11 5.18
1976 6331 5.767269 ACATCATACAAACATTTTGTCGCA 58.233 33.333 7.54 0.00 34.11 5.10
1977 6332 7.044117 CCATACATCATACAAACATTTTGTCGC 60.044 37.037 7.54 0.00 34.11 5.19
1978 6333 7.967854 ACCATACATCATACAAACATTTTGTCG 59.032 33.333 7.54 1.99 34.11 4.35
1979 6334 9.289303 GACCATACATCATACAAACATTTTGTC 57.711 33.333 7.54 0.00 34.11 3.18
1980 6335 9.023962 AGACCATACATCATACAAACATTTTGT 57.976 29.630 9.15 9.15 36.49 2.83
2010 6365 9.672086 CGTTGAACAAAGTGGATTAATTAGAAA 57.328 29.630 0.00 0.00 0.00 2.52
2011 6366 8.293867 CCGTTGAACAAAGTGGATTAATTAGAA 58.706 33.333 0.00 0.00 0.00 2.10
2012 6367 7.094549 CCCGTTGAACAAAGTGGATTAATTAGA 60.095 37.037 0.00 0.00 0.00 2.10
2013 6368 7.027161 CCCGTTGAACAAAGTGGATTAATTAG 58.973 38.462 0.00 0.00 0.00 1.73
2014 6369 6.071840 CCCCGTTGAACAAAGTGGATTAATTA 60.072 38.462 0.00 0.00 0.00 1.40
2015 6370 5.279256 CCCCGTTGAACAAAGTGGATTAATT 60.279 40.000 0.00 0.00 0.00 1.40
2016 6371 4.219725 CCCCGTTGAACAAAGTGGATTAAT 59.780 41.667 0.00 0.00 0.00 1.40
2017 6372 3.570550 CCCCGTTGAACAAAGTGGATTAA 59.429 43.478 0.00 0.00 0.00 1.40
2018 6373 3.150767 CCCCGTTGAACAAAGTGGATTA 58.849 45.455 0.00 0.00 0.00 1.75
2019 6374 1.960689 CCCCGTTGAACAAAGTGGATT 59.039 47.619 0.00 0.00 0.00 3.01
2020 6375 1.133606 ACCCCGTTGAACAAAGTGGAT 60.134 47.619 8.55 0.00 0.00 3.41
2021 6376 0.256464 ACCCCGTTGAACAAAGTGGA 59.744 50.000 8.55 0.00 0.00 4.02
2022 6377 1.877443 CTACCCCGTTGAACAAAGTGG 59.123 52.381 0.00 1.46 0.00 4.00
2036 6391 3.132467 AGTCGACTAAGCAATTCTACCCC 59.868 47.826 18.46 0.00 0.00 4.95
2038 6393 4.745649 ACAGTCGACTAAGCAATTCTACC 58.254 43.478 19.57 0.00 0.00 3.18
2102 6457 7.979537 GGCGTCCCTTTAAATAAATGAAAAGAT 59.020 33.333 0.00 0.00 31.96 2.40
2111 6467 6.040616 TCTGTTTTGGCGTCCCTTTAAATAAA 59.959 34.615 0.00 0.00 0.00 1.40
2133 6489 3.070018 CCAGAAGGCACAAACTACTCTG 58.930 50.000 0.00 0.00 0.00 3.35
2134 6490 2.706190 ACCAGAAGGCACAAACTACTCT 59.294 45.455 0.00 0.00 39.06 3.24
2135 6491 3.067833 GACCAGAAGGCACAAACTACTC 58.932 50.000 0.00 0.00 39.06 2.59
2136 6492 2.438021 TGACCAGAAGGCACAAACTACT 59.562 45.455 0.00 0.00 39.06 2.57
2137 6493 2.846193 TGACCAGAAGGCACAAACTAC 58.154 47.619 0.00 0.00 39.06 2.73
2138 6494 3.788227 ATGACCAGAAGGCACAAACTA 57.212 42.857 0.00 0.00 39.06 2.24
2139 6495 2.624838 CAATGACCAGAAGGCACAAACT 59.375 45.455 0.00 0.00 39.06 2.66
2140 6496 2.863704 GCAATGACCAGAAGGCACAAAC 60.864 50.000 0.00 0.00 39.06 2.93
2141 6497 1.340889 GCAATGACCAGAAGGCACAAA 59.659 47.619 0.00 0.00 39.06 2.83
2142 6498 0.961019 GCAATGACCAGAAGGCACAA 59.039 50.000 0.00 0.00 39.06 3.33
2321 6837 5.710099 TCAATGGGGAGTGAAATAACTGAAC 59.290 40.000 0.00 0.00 0.00 3.18
2337 6853 3.161067 TGTGTGGTGTTTATCAATGGGG 58.839 45.455 0.00 0.00 0.00 4.96
2468 7243 8.515414 AGATAACTGCTTCTACAAATTTTGTCC 58.485 33.333 17.64 4.49 44.12 4.02
2599 7376 3.295093 TGTTCAAAGTGGCAATGAAGGA 58.705 40.909 10.72 1.07 34.02 3.36
2608 7385 5.701290 ACTAGTAAGTGATGTTCAAAGTGGC 59.299 40.000 0.00 0.00 33.57 5.01
2783 7567 1.079057 GTTGGAGGAGCCGAGGAAC 60.079 63.158 0.00 0.00 40.66 3.62
2792 7576 2.027625 GGCGAACGTGTTGGAGGAG 61.028 63.158 0.00 0.00 0.00 3.69
2793 7577 2.029964 GGCGAACGTGTTGGAGGA 59.970 61.111 0.00 0.00 0.00 3.71
2794 7578 3.411351 CGGCGAACGTGTTGGAGG 61.411 66.667 0.00 0.00 37.93 4.30
2858 7645 1.204312 GCTTGAGAACGTTGTCGGC 59.796 57.895 19.20 20.03 41.85 5.54
2921 7708 0.034198 TCGCAATGAAGTCCAACGGA 59.966 50.000 0.00 0.00 0.00 4.69
2999 7786 0.738975 TCCATAGTCCGCTGAAGTCG 59.261 55.000 0.00 0.00 0.00 4.18
3055 7842 4.539083 TCGCTGGCACAACACCGT 62.539 61.111 0.00 0.00 38.70 4.83
3074 7861 2.189676 AGACCTCTGAGTCGGACTAGA 58.810 52.381 11.27 12.51 41.83 2.43
3095 7882 2.037251 GTCCCTTAGTGTGACAGAAGCA 59.963 50.000 2.43 0.00 0.00 3.91
3096 7883 2.037251 TGTCCCTTAGTGTGACAGAAGC 59.963 50.000 2.43 0.00 34.28 3.86
3149 7936 1.276138 ACATCAGTCTGCACCGATTCA 59.724 47.619 0.00 0.00 0.00 2.57
3151 7938 2.079158 CAACATCAGTCTGCACCGATT 58.921 47.619 0.00 0.00 0.00 3.34
3203 7990 2.753043 CATGACCTGGGCTGTGGC 60.753 66.667 0.00 0.00 37.82 5.01
3226 8019 0.526662 GATGAAGGACTCGACACGGT 59.473 55.000 0.00 0.00 0.00 4.83
3327 8307 1.446792 CGCTCTTGTCGCAGTGGAT 60.447 57.895 0.00 0.00 0.00 3.41
3490 8471 1.807742 CGTCGAGAACCTTGAGAGACT 59.192 52.381 0.00 0.00 0.00 3.24
3516 8497 1.239347 GTGCCCTCCAAAGAGTTGTC 58.761 55.000 0.00 0.00 38.58 3.18
3543 8524 1.134580 CATCGTGGTGCTCTGGAATCT 60.135 52.381 0.00 0.00 0.00 2.40
3680 8661 4.091424 CAAGTACTTAAGCATCGCAAAGC 58.909 43.478 8.04 0.00 30.48 3.51
3761 8771 2.636830 CCCTGGCTGAGACATAACTTG 58.363 52.381 0.00 0.00 0.00 3.16
3766 8776 3.647367 GGCCCTGGCTGAGACATA 58.353 61.111 8.29 0.00 41.60 2.29
3774 8784 3.710722 CTTCTCACGGCCCTGGCT 61.711 66.667 8.29 0.00 41.60 4.75
3802 8812 9.537192 CATAGATGTGAAATATTGGCAAACATT 57.463 29.630 12.68 8.91 0.00 2.71
3803 8813 8.698210 ACATAGATGTGAAATATTGGCAAACAT 58.302 29.630 11.59 11.59 40.03 2.71
3804 8814 8.065473 ACATAGATGTGAAATATTGGCAAACA 57.935 30.769 3.01 2.98 40.03 2.83
3805 8815 8.931385 AACATAGATGTGAAATATTGGCAAAC 57.069 30.769 3.01 0.00 41.61 2.93
3945 8956 2.452505 ACCTGAGCCTGACTAGTTCTC 58.547 52.381 0.00 2.92 0.00 2.87
3974 8985 6.543465 TCTGCTGGATAATCGATGTTCAAAAT 59.457 34.615 0.00 0.00 0.00 1.82
3987 8998 5.679601 GAGTTTCTCCTTCTGCTGGATAAT 58.320 41.667 0.00 0.00 32.56 1.28
3988 8999 4.382040 CGAGTTTCTCCTTCTGCTGGATAA 60.382 45.833 0.00 0.00 32.56 1.75
4027 9297 4.097589 AGCTGCTCTTTTATCCAATGAAGC 59.902 41.667 0.00 0.00 0.00 3.86
4033 9303 6.594788 AAATGAAGCTGCTCTTTTATCCAA 57.405 33.333 1.00 0.00 34.56 3.53
4071 9341 2.029828 AGAGTGTAACAGGCGAGTCTTG 60.030 50.000 0.00 0.00 41.43 3.02
4073 9343 1.912417 AGAGTGTAACAGGCGAGTCT 58.088 50.000 0.00 0.00 41.43 3.24
4174 9444 3.077359 CCCAAGAAACTGAGTCCATCAC 58.923 50.000 0.00 0.00 33.22 3.06
4195 9465 1.008079 GAGCACACCTGCAACTTGC 60.008 57.895 6.82 6.82 46.97 4.01
4196 9466 0.956633 ATGAGCACACCTGCAACTTG 59.043 50.000 0.00 0.00 46.97 3.16
4197 9467 1.696063 AATGAGCACACCTGCAACTT 58.304 45.000 0.00 0.00 46.97 2.66
4198 9468 1.338973 CAAATGAGCACACCTGCAACT 59.661 47.619 0.00 0.00 46.97 3.16
4199 9469 1.337703 TCAAATGAGCACACCTGCAAC 59.662 47.619 0.00 0.00 46.97 4.17
4200 9470 1.337703 GTCAAATGAGCACACCTGCAA 59.662 47.619 0.00 0.00 46.97 4.08
4201 9471 0.953727 GTCAAATGAGCACACCTGCA 59.046 50.000 0.00 0.00 46.97 4.41
4202 9472 0.242017 GGTCAAATGAGCACACCTGC 59.758 55.000 7.68 0.00 44.63 4.85
4203 9473 1.608055 TGGTCAAATGAGCACACCTG 58.392 50.000 11.00 0.00 46.24 4.00
4210 9480 3.233355 ACGGAGTGGTCAAATGAGC 57.767 52.632 5.68 5.68 42.51 4.26
4224 9494 2.248248 AGAAACTGAGTCCATCACGGA 58.752 47.619 0.00 0.00 43.61 4.69
4225 9495 2.738846 CAAGAAACTGAGTCCATCACGG 59.261 50.000 0.00 0.00 33.22 4.94
4226 9496 2.738846 CCAAGAAACTGAGTCCATCACG 59.261 50.000 0.00 0.00 33.22 4.35
4227 9497 3.077359 CCCAAGAAACTGAGTCCATCAC 58.923 50.000 0.00 0.00 33.22 3.06
4228 9498 2.553028 GCCCAAGAAACTGAGTCCATCA 60.553 50.000 0.00 0.00 36.21 3.07
4229 9499 2.087646 GCCCAAGAAACTGAGTCCATC 58.912 52.381 0.00 0.00 0.00 3.51
4230 9500 1.425066 TGCCCAAGAAACTGAGTCCAT 59.575 47.619 0.00 0.00 0.00 3.41
4231 9501 0.843309 TGCCCAAGAAACTGAGTCCA 59.157 50.000 0.00 0.00 0.00 4.02
4232 9502 1.815003 CATGCCCAAGAAACTGAGTCC 59.185 52.381 0.00 0.00 0.00 3.85
4233 9503 2.746362 CTCATGCCCAAGAAACTGAGTC 59.254 50.000 0.00 0.00 0.00 3.36
4234 9504 2.107204 ACTCATGCCCAAGAAACTGAGT 59.893 45.455 0.00 0.00 38.71 3.41
4235 9505 2.486982 CACTCATGCCCAAGAAACTGAG 59.513 50.000 0.00 0.00 36.92 3.35
4236 9506 2.507484 CACTCATGCCCAAGAAACTGA 58.493 47.619 0.00 0.00 0.00 3.41
4237 9507 1.542915 CCACTCATGCCCAAGAAACTG 59.457 52.381 0.00 0.00 0.00 3.16
4238 9508 1.915141 CCACTCATGCCCAAGAAACT 58.085 50.000 0.00 0.00 0.00 2.66
4239 9509 0.244721 GCCACTCATGCCCAAGAAAC 59.755 55.000 0.00 0.00 0.00 2.78
4240 9510 0.899717 GGCCACTCATGCCCAAGAAA 60.900 55.000 0.00 0.00 43.33 2.52
4241 9511 1.304381 GGCCACTCATGCCCAAGAA 60.304 57.895 0.00 0.00 43.33 2.52
4242 9512 2.356278 GGCCACTCATGCCCAAGA 59.644 61.111 0.00 0.00 43.33 3.02
4363 9633 2.691526 CCCTGTAATGATGCATGCAACT 59.308 45.455 26.68 9.43 0.00 3.16
4436 9706 6.016360 CCAAGTGTCATTTCTTCATGTGGTTA 60.016 38.462 0.00 0.00 0.00 2.85
4438 9708 4.279169 CCAAGTGTCATTTCTTCATGTGGT 59.721 41.667 0.00 0.00 0.00 4.16
4452 9722 0.179020 CTGGTTCCTGCCAAGTGTCA 60.179 55.000 0.00 0.00 38.18 3.58
4470 9740 1.640670 TGATAAGCTTTGGAAGGCCCT 59.359 47.619 3.20 0.00 35.38 5.19
4495 9765 5.228945 TCTTTGTTCCTTCTCCCACTTAG 57.771 43.478 0.00 0.00 0.00 2.18
4503 9773 3.632145 TGCCAGTTTCTTTGTTCCTTCTC 59.368 43.478 0.00 0.00 0.00 2.87
4579 9849 1.475403 ACCAGATACTGAGGACACCG 58.525 55.000 0.00 0.00 32.44 4.94
4601 9871 3.525537 ACGTCTGAAGCAGGTATCATTG 58.474 45.455 0.00 0.00 31.51 2.82
4643 9913 2.670414 GTCAGTGATTTCTGAGCTTCGG 59.330 50.000 0.00 0.00 43.76 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.