Multiple sequence alignment - TraesCS4B01G033200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G033200 chr4B 100.000 2675 0 0 1 2675 24697716 24695042 0.000000e+00 4940.0
1 TraesCS4B01G033200 chr4B 88.813 1019 108 6 956 1970 24741599 24742615 0.000000e+00 1245.0
2 TraesCS4B01G033200 chr4B 85.702 1182 146 20 888 2056 24759319 24760490 0.000000e+00 1225.0
3 TraesCS4B01G033200 chr4B 92.308 65 4 1 2061 2125 168185146 168185083 1.020000e-14 91.6
4 TraesCS4B01G033200 chr4B 89.706 68 5 1 2062 2129 498537617 498537552 4.740000e-13 86.1
5 TraesCS4B01G033200 chr4A 89.582 1171 115 6 899 2066 586708629 586709795 0.000000e+00 1480.0
6 TraesCS4B01G033200 chr4A 89.332 1153 117 5 899 2049 456459571 456460719 0.000000e+00 1443.0
7 TraesCS4B01G033200 chr4A 90.536 317 22 4 2140 2454 586709821 586710131 1.920000e-111 412.0
8 TraesCS4B01G033200 chr4A 90.221 317 22 5 2140 2454 456460749 456461058 3.210000e-109 405.0
9 TraesCS4B01G033200 chr4A 96.721 183 5 1 703 885 465004370 465004189 1.200000e-78 303.0
10 TraesCS4B01G033200 chr4D 87.383 1173 134 12 899 2066 14847939 14846776 0.000000e+00 1334.0
11 TraesCS4B01G033200 chr4D 86.421 1193 141 17 886 2066 14843636 14842453 0.000000e+00 1286.0
12 TraesCS4B01G033200 chr4D 85.959 1168 149 10 900 2056 14914525 14915688 0.000000e+00 1234.0
13 TraesCS4B01G033200 chr4D 85.751 1172 150 11 900 2057 14862706 14863874 0.000000e+00 1223.0
14 TraesCS4B01G033200 chr4D 90.603 564 49 3 2108 2670 14474293 14474853 0.000000e+00 745.0
15 TraesCS4B01G033200 chr4D 81.967 549 72 11 2108 2653 14846766 14846242 8.790000e-120 440.0
16 TraesCS4B01G033200 chr3B 85.678 1187 160 9 886 2066 452725189 452726371 0.000000e+00 1242.0
17 TraesCS4B01G033200 chr3B 94.634 205 11 0 500 704 657894146 657893942 4.300000e-83 318.0
18 TraesCS4B01G033200 chr6B 97.624 505 12 0 1 505 165303069 165303573 0.000000e+00 867.0
19 TraesCS4B01G033200 chr6B 95.122 205 10 0 501 705 490734835 490734631 9.240000e-85 324.0
20 TraesCS4B01G033200 chr6B 94.686 207 11 0 500 706 664898624 664898830 3.320000e-84 322.0
21 TraesCS4B01G033200 chr6B 95.522 201 9 0 505 705 712380606 712380406 3.320000e-84 322.0
22 TraesCS4B01G033200 chr6B 96.216 185 5 2 703 885 692251900 692251716 4.330000e-78 302.0
23 TraesCS4B01G033200 chr3D 97.426 505 13 0 1 505 591170847 591170343 0.000000e+00 861.0
24 TraesCS4B01G033200 chr3D 97.036 506 14 1 1 505 157743075 157742570 0.000000e+00 850.0
25 TraesCS4B01G033200 chr3D 96.175 183 6 1 703 885 591152643 591152462 5.600000e-77 298.0
26 TraesCS4B01G033200 chr3D 93.750 64 3 1 2061 2124 535746906 535746844 7.880000e-16 95.3
27 TraesCS4B01G033200 chr1D 97.233 506 13 1 1 505 470897398 470896893 0.000000e+00 856.0
28 TraesCS4B01G033200 chr5D 97.030 505 15 0 1 505 51071873 51072377 0.000000e+00 850.0
29 TraesCS4B01G033200 chr5D 97.030 505 15 0 1 505 496923720 496923216 0.000000e+00 850.0
30 TraesCS4B01G033200 chr5D 96.175 183 7 0 703 885 496923220 496923038 1.560000e-77 300.0
31 TraesCS4B01G033200 chr7D 96.838 506 15 1 1 505 410065947 410066452 0.000000e+00 845.0
32 TraesCS4B01G033200 chr7D 96.838 506 15 1 1 505 606995150 606995655 0.000000e+00 845.0
33 TraesCS4B01G033200 chr6D 96.838 506 14 2 1 505 446734382 446734886 0.000000e+00 845.0
34 TraesCS4B01G033200 chr6D 97.268 183 5 0 703 885 409758020 409757838 7.190000e-81 311.0
35 TraesCS4B01G033200 chr7B 95.098 204 10 0 502 705 255065251 255065454 3.320000e-84 322.0
36 TraesCS4B01G033200 chr7A 94.686 207 10 1 500 705 123243008 123242802 1.190000e-83 320.0
37 TraesCS4B01G033200 chr7A 93.750 64 4 0 2061 2124 608875147 608875210 2.190000e-16 97.1
38 TraesCS4B01G033200 chr7A 93.548 62 4 0 2061 2122 11385077 11385138 2.840000e-15 93.5
39 TraesCS4B01G033200 chr5B 94.231 208 12 0 499 706 457971718 457971511 4.300000e-83 318.0
40 TraesCS4B01G033200 chr6A 94.608 204 11 0 502 705 428667824 428668027 1.550000e-82 316.0
41 TraesCS4B01G033200 chr6A 92.188 64 3 2 2061 2124 20747056 20746995 3.670000e-14 89.8
42 TraesCS4B01G033200 chr1B 95.025 201 10 0 505 705 95048171 95047971 1.550000e-82 316.0
43 TraesCS4B01G033200 chr2B 96.721 183 6 0 703 885 106744213 106744395 3.350000e-79 305.0
44 TraesCS4B01G033200 chr2B 96.175 183 7 0 703 885 106730655 106730837 1.560000e-77 300.0
45 TraesCS4B01G033200 chr5A 96.175 183 7 0 703 885 619771404 619771222 1.560000e-77 300.0
46 TraesCS4B01G033200 chr5A 95.000 60 1 2 2061 2119 113799713 113799655 2.840000e-15 93.5
47 TraesCS4B01G033200 chr1A 96.175 183 7 0 703 885 107465568 107465386 1.560000e-77 300.0
48 TraesCS4B01G033200 chr3A 96.610 59 2 0 2061 2119 520438027 520438085 6.090000e-17 99.0
49 TraesCS4B01G033200 chr3A 93.548 62 1 3 2061 2122 154188073 154188015 3.670000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G033200 chr4B 24695042 24697716 2674 True 4940 4940 100.0000 1 2675 1 chr4B.!!$R1 2674
1 TraesCS4B01G033200 chr4B 24741599 24742615 1016 False 1245 1245 88.8130 956 1970 1 chr4B.!!$F1 1014
2 TraesCS4B01G033200 chr4B 24759319 24760490 1171 False 1225 1225 85.7020 888 2056 1 chr4B.!!$F2 1168
3 TraesCS4B01G033200 chr4A 586708629 586710131 1502 False 946 1480 90.0590 899 2454 2 chr4A.!!$F2 1555
4 TraesCS4B01G033200 chr4A 456459571 456461058 1487 False 924 1443 89.7765 899 2454 2 chr4A.!!$F1 1555
5 TraesCS4B01G033200 chr4D 14914525 14915688 1163 False 1234 1234 85.9590 900 2056 1 chr4D.!!$F3 1156
6 TraesCS4B01G033200 chr4D 14862706 14863874 1168 False 1223 1223 85.7510 900 2057 1 chr4D.!!$F2 1157
7 TraesCS4B01G033200 chr4D 14842453 14847939 5486 True 1020 1334 85.2570 886 2653 3 chr4D.!!$R1 1767
8 TraesCS4B01G033200 chr4D 14474293 14474853 560 False 745 745 90.6030 2108 2670 1 chr4D.!!$F1 562
9 TraesCS4B01G033200 chr3B 452725189 452726371 1182 False 1242 1242 85.6780 886 2066 1 chr3B.!!$F1 1180
10 TraesCS4B01G033200 chr6B 165303069 165303573 504 False 867 867 97.6240 1 505 1 chr6B.!!$F1 504
11 TraesCS4B01G033200 chr3D 591170343 591170847 504 True 861 861 97.4260 1 505 1 chr3D.!!$R4 504
12 TraesCS4B01G033200 chr3D 157742570 157743075 505 True 850 850 97.0360 1 505 1 chr3D.!!$R1 504
13 TraesCS4B01G033200 chr1D 470896893 470897398 505 True 856 856 97.2330 1 505 1 chr1D.!!$R1 504
14 TraesCS4B01G033200 chr5D 51071873 51072377 504 False 850 850 97.0300 1 505 1 chr5D.!!$F1 504
15 TraesCS4B01G033200 chr5D 496923038 496923720 682 True 575 850 96.6025 1 885 2 chr5D.!!$R1 884
16 TraesCS4B01G033200 chr7D 410065947 410066452 505 False 845 845 96.8380 1 505 1 chr7D.!!$F1 504
17 TraesCS4B01G033200 chr7D 606995150 606995655 505 False 845 845 96.8380 1 505 1 chr7D.!!$F2 504
18 TraesCS4B01G033200 chr6D 446734382 446734886 504 False 845 845 96.8380 1 505 1 chr6D.!!$F1 504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
510 512 0.03601 CACAAGACACTAGGGGCCAG 60.036 60.0 4.39 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2093 6445 0.54341 TGCTACTCCCTCCGTTCCAA 60.543 55.0 0.0 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
204 205 5.221925 GGTTGTGATGGTCCATATCCACTAT 60.222 44.000 18.24 0.00 37.81 2.12
242 243 7.445034 AACTTCGGTTCCACCATCTTTGGTA 62.445 44.000 0.00 0.00 43.81 3.25
505 507 2.761208 CTCCTACCACAAGACACTAGGG 59.239 54.545 0.00 0.00 0.00 3.53
506 508 1.831736 CCTACCACAAGACACTAGGGG 59.168 57.143 0.00 0.00 0.00 4.79
507 509 1.207329 CTACCACAAGACACTAGGGGC 59.793 57.143 0.00 0.00 0.00 5.80
508 510 1.299976 CCACAAGACACTAGGGGCC 59.700 63.158 0.00 0.00 0.00 5.80
509 511 1.488705 CCACAAGACACTAGGGGCCA 61.489 60.000 4.39 0.00 0.00 5.36
510 512 0.036010 CACAAGACACTAGGGGCCAG 60.036 60.000 4.39 0.00 0.00 4.85
511 513 0.473886 ACAAGACACTAGGGGCCAGT 60.474 55.000 4.39 0.00 0.00 4.00
512 514 0.693049 CAAGACACTAGGGGCCAGTT 59.307 55.000 4.39 0.00 0.00 3.16
513 515 0.984995 AAGACACTAGGGGCCAGTTC 59.015 55.000 4.39 2.39 0.00 3.01
514 516 0.117340 AGACACTAGGGGCCAGTTCT 59.883 55.000 4.39 4.61 0.00 3.01
515 517 0.984995 GACACTAGGGGCCAGTTCTT 59.015 55.000 4.39 0.00 0.00 2.52
516 518 1.351350 GACACTAGGGGCCAGTTCTTT 59.649 52.381 4.39 0.00 0.00 2.52
517 519 1.780919 ACACTAGGGGCCAGTTCTTTT 59.219 47.619 4.39 0.00 0.00 2.27
518 520 2.162681 CACTAGGGGCCAGTTCTTTTG 58.837 52.381 4.39 0.00 0.00 2.44
519 521 1.075536 ACTAGGGGCCAGTTCTTTTGG 59.924 52.381 4.39 0.00 38.78 3.28
520 522 0.407918 TAGGGGCCAGTTCTTTTGGG 59.592 55.000 4.39 0.00 36.19 4.12
521 523 1.155155 GGGGCCAGTTCTTTTGGGA 59.845 57.895 4.39 0.00 36.19 4.37
522 524 0.471022 GGGGCCAGTTCTTTTGGGAA 60.471 55.000 4.39 0.00 36.19 3.97
523 525 1.419381 GGGCCAGTTCTTTTGGGAAA 58.581 50.000 4.39 0.00 36.19 3.13
524 526 1.977854 GGGCCAGTTCTTTTGGGAAAT 59.022 47.619 4.39 0.00 36.19 2.17
525 527 2.371841 GGGCCAGTTCTTTTGGGAAATT 59.628 45.455 4.39 0.00 36.19 1.82
526 528 3.557054 GGGCCAGTTCTTTTGGGAAATTC 60.557 47.826 4.39 0.00 36.19 2.17
527 529 3.324846 GGCCAGTTCTTTTGGGAAATTCT 59.675 43.478 0.00 0.00 36.19 2.40
528 530 4.560128 GCCAGTTCTTTTGGGAAATTCTC 58.440 43.478 0.00 0.00 36.19 2.87
529 531 4.561530 GCCAGTTCTTTTGGGAAATTCTCC 60.562 45.833 0.00 0.00 44.54 3.71
543 545 3.941704 ATTCTCCCAGAATTGACCCTC 57.058 47.619 0.00 0.00 41.90 4.30
544 546 2.649742 TCTCCCAGAATTGACCCTCT 57.350 50.000 0.00 0.00 0.00 3.69
545 547 2.472029 TCTCCCAGAATTGACCCTCTC 58.528 52.381 0.00 0.00 0.00 3.20
546 548 1.488393 CTCCCAGAATTGACCCTCTCC 59.512 57.143 0.00 0.00 0.00 3.71
547 549 0.548510 CCCAGAATTGACCCTCTCCC 59.451 60.000 0.00 0.00 0.00 4.30
548 550 0.548510 CCAGAATTGACCCTCTCCCC 59.451 60.000 0.00 0.00 0.00 4.81
549 551 1.289160 CAGAATTGACCCTCTCCCCA 58.711 55.000 0.00 0.00 0.00 4.96
550 552 1.211457 CAGAATTGACCCTCTCCCCAG 59.789 57.143 0.00 0.00 0.00 4.45
551 553 0.106967 GAATTGACCCTCTCCCCAGC 60.107 60.000 0.00 0.00 0.00 4.85
552 554 0.551131 AATTGACCCTCTCCCCAGCT 60.551 55.000 0.00 0.00 0.00 4.24
553 555 0.551131 ATTGACCCTCTCCCCAGCTT 60.551 55.000 0.00 0.00 0.00 3.74
554 556 1.201429 TTGACCCTCTCCCCAGCTTC 61.201 60.000 0.00 0.00 0.00 3.86
555 557 1.306568 GACCCTCTCCCCAGCTTCT 60.307 63.158 0.00 0.00 0.00 2.85
556 558 1.306568 ACCCTCTCCCCAGCTTCTC 60.307 63.158 0.00 0.00 0.00 2.87
557 559 2.069430 CCCTCTCCCCAGCTTCTCC 61.069 68.421 0.00 0.00 0.00 3.71
558 560 2.069430 CCTCTCCCCAGCTTCTCCC 61.069 68.421 0.00 0.00 0.00 4.30
559 561 1.306482 CTCTCCCCAGCTTCTCCCA 60.306 63.158 0.00 0.00 0.00 4.37
560 562 1.306482 TCTCCCCAGCTTCTCCCAG 60.306 63.158 0.00 0.00 0.00 4.45
561 563 1.306482 CTCCCCAGCTTCTCCCAGA 60.306 63.158 0.00 0.00 0.00 3.86
562 564 0.911525 CTCCCCAGCTTCTCCCAGAA 60.912 60.000 0.00 0.00 32.50 3.02
563 565 0.253347 TCCCCAGCTTCTCCCAGAAT 60.253 55.000 0.00 0.00 33.13 2.40
564 566 0.627986 CCCCAGCTTCTCCCAGAATT 59.372 55.000 0.00 0.00 33.13 2.17
565 567 1.684248 CCCCAGCTTCTCCCAGAATTG 60.684 57.143 0.00 0.00 33.13 2.32
566 568 1.005215 CCCAGCTTCTCCCAGAATTGT 59.995 52.381 0.00 0.00 33.13 2.71
567 569 2.363683 CCAGCTTCTCCCAGAATTGTC 58.636 52.381 0.00 0.00 33.13 3.18
568 570 2.290514 CCAGCTTCTCCCAGAATTGTCA 60.291 50.000 0.00 0.00 33.13 3.58
569 571 2.746362 CAGCTTCTCCCAGAATTGTCAC 59.254 50.000 0.00 0.00 33.13 3.67
570 572 2.641815 AGCTTCTCCCAGAATTGTCACT 59.358 45.455 0.00 0.00 33.13 3.41
571 573 3.006247 GCTTCTCCCAGAATTGTCACTC 58.994 50.000 0.00 0.00 33.13 3.51
572 574 3.604582 CTTCTCCCAGAATTGTCACTCC 58.395 50.000 0.00 0.00 33.13 3.85
573 575 2.619931 TCTCCCAGAATTGTCACTCCA 58.380 47.619 0.00 0.00 0.00 3.86
574 576 3.184628 TCTCCCAGAATTGTCACTCCAT 58.815 45.455 0.00 0.00 0.00 3.41
575 577 3.588842 TCTCCCAGAATTGTCACTCCATT 59.411 43.478 0.00 0.00 0.00 3.16
576 578 4.043310 TCTCCCAGAATTGTCACTCCATTT 59.957 41.667 0.00 0.00 0.00 2.32
577 579 4.739793 TCCCAGAATTGTCACTCCATTTT 58.260 39.130 0.00 0.00 0.00 1.82
578 580 5.147032 TCCCAGAATTGTCACTCCATTTTT 58.853 37.500 0.00 0.00 0.00 1.94
579 581 5.243730 TCCCAGAATTGTCACTCCATTTTTC 59.756 40.000 0.00 0.00 0.00 2.29
580 582 5.244626 CCCAGAATTGTCACTCCATTTTTCT 59.755 40.000 0.00 0.00 0.00 2.52
581 583 6.239402 CCCAGAATTGTCACTCCATTTTTCTT 60.239 38.462 0.00 0.00 0.00 2.52
582 584 7.212274 CCAGAATTGTCACTCCATTTTTCTTT 58.788 34.615 0.00 0.00 0.00 2.52
583 585 8.359642 CCAGAATTGTCACTCCATTTTTCTTTA 58.640 33.333 0.00 0.00 0.00 1.85
584 586 9.185192 CAGAATTGTCACTCCATTTTTCTTTAC 57.815 33.333 0.00 0.00 0.00 2.01
585 587 8.912988 AGAATTGTCACTCCATTTTTCTTTACA 58.087 29.630 0.00 0.00 0.00 2.41
586 588 9.528018 GAATTGTCACTCCATTTTTCTTTACAA 57.472 29.630 0.00 0.00 0.00 2.41
589 591 9.528018 TTGTCACTCCATTTTTCTTTACAATTC 57.472 29.630 0.00 0.00 0.00 2.17
590 592 8.141268 TGTCACTCCATTTTTCTTTACAATTCC 58.859 33.333 0.00 0.00 0.00 3.01
591 593 8.360390 GTCACTCCATTTTTCTTTACAATTCCT 58.640 33.333 0.00 0.00 0.00 3.36
592 594 9.581289 TCACTCCATTTTTCTTTACAATTCCTA 57.419 29.630 0.00 0.00 0.00 2.94
593 595 9.846248 CACTCCATTTTTCTTTACAATTCCTAG 57.154 33.333 0.00 0.00 0.00 3.02
594 596 8.523658 ACTCCATTTTTCTTTACAATTCCTAGC 58.476 33.333 0.00 0.00 0.00 3.42
595 597 8.650143 TCCATTTTTCTTTACAATTCCTAGCT 57.350 30.769 0.00 0.00 0.00 3.32
596 598 9.747898 TCCATTTTTCTTTACAATTCCTAGCTA 57.252 29.630 0.00 0.00 0.00 3.32
603 605 9.886132 TTCTTTACAATTCCTAGCTAGTTAAGG 57.114 33.333 19.31 6.57 0.00 2.69
604 606 9.043548 TCTTTACAATTCCTAGCTAGTTAAGGT 57.956 33.333 19.31 15.47 39.81 3.50
605 607 9.315525 CTTTACAATTCCTAGCTAGTTAAGGTC 57.684 37.037 19.31 0.00 37.13 3.85
606 608 8.605325 TTACAATTCCTAGCTAGTTAAGGTCT 57.395 34.615 19.31 0.00 37.13 3.85
607 609 9.705103 TTACAATTCCTAGCTAGTTAAGGTCTA 57.295 33.333 19.31 5.95 37.13 2.59
608 610 8.605325 ACAATTCCTAGCTAGTTAAGGTCTAA 57.395 34.615 19.31 0.00 37.13 2.10
609 611 9.214962 ACAATTCCTAGCTAGTTAAGGTCTAAT 57.785 33.333 19.31 0.19 37.13 1.73
613 615 9.933240 TTCCTAGCTAGTTAAGGTCTAATTAGT 57.067 33.333 19.31 0.00 37.13 2.24
614 616 9.933240 TCCTAGCTAGTTAAGGTCTAATTAGTT 57.067 33.333 19.31 2.61 37.13 2.24
618 620 9.933240 AGCTAGTTAAGGTCTAATTAGTTAGGA 57.067 33.333 12.19 0.00 38.27 2.94
650 652 5.603170 AAATATCAAGTGGCAATTCTGGG 57.397 39.130 0.00 0.00 0.00 4.45
651 653 2.905415 ATCAAGTGGCAATTCTGGGA 57.095 45.000 0.00 0.00 0.00 4.37
652 654 2.205022 TCAAGTGGCAATTCTGGGAG 57.795 50.000 0.00 0.00 0.00 4.30
653 655 1.704628 TCAAGTGGCAATTCTGGGAGA 59.295 47.619 0.00 0.00 0.00 3.71
654 656 2.108075 TCAAGTGGCAATTCTGGGAGAA 59.892 45.455 0.00 0.00 38.78 2.87
655 657 2.490903 CAAGTGGCAATTCTGGGAGAAG 59.509 50.000 0.00 0.00 37.69 2.85
656 658 0.813821 GTGGCAATTCTGGGAGAAGC 59.186 55.000 0.00 0.00 37.69 3.86
657 659 0.700564 TGGCAATTCTGGGAGAAGCT 59.299 50.000 0.00 0.00 37.69 3.74
658 660 1.101331 GGCAATTCTGGGAGAAGCTG 58.899 55.000 0.00 0.00 37.69 4.24
659 661 1.101331 GCAATTCTGGGAGAAGCTGG 58.899 55.000 0.00 0.00 37.69 4.85
660 662 1.760192 CAATTCTGGGAGAAGCTGGG 58.240 55.000 0.00 0.00 37.69 4.45
661 663 0.627986 AATTCTGGGAGAAGCTGGGG 59.372 55.000 0.00 0.00 37.69 4.96
662 664 0.253347 ATTCTGGGAGAAGCTGGGGA 60.253 55.000 0.00 0.00 37.69 4.81
663 665 0.911525 TTCTGGGAGAAGCTGGGGAG 60.912 60.000 0.00 0.00 29.50 4.30
664 666 2.285668 TGGGAGAAGCTGGGGAGG 60.286 66.667 0.00 0.00 0.00 4.30
665 667 3.093172 GGGAGAAGCTGGGGAGGG 61.093 72.222 0.00 0.00 0.00 4.30
666 668 3.093172 GGAGAAGCTGGGGAGGGG 61.093 72.222 0.00 0.00 0.00 4.79
667 669 3.093172 GAGAAGCTGGGGAGGGGG 61.093 72.222 0.00 0.00 0.00 5.40
668 670 3.952799 GAGAAGCTGGGGAGGGGGT 62.953 68.421 0.00 0.00 0.00 4.95
669 671 3.412408 GAAGCTGGGGAGGGGGTC 61.412 72.222 0.00 0.00 0.00 4.46
670 672 4.285790 AAGCTGGGGAGGGGGTCA 62.286 66.667 0.00 0.00 0.00 4.02
671 673 3.829311 AAGCTGGGGAGGGGGTCAA 62.829 63.158 0.00 0.00 0.00 3.18
672 674 3.023735 GCTGGGGAGGGGGTCAAT 61.024 66.667 0.00 0.00 0.00 2.57
673 675 2.626467 GCTGGGGAGGGGGTCAATT 61.626 63.158 0.00 0.00 0.00 2.32
674 676 1.615262 CTGGGGAGGGGGTCAATTC 59.385 63.158 0.00 0.00 0.00 2.17
675 677 0.921256 CTGGGGAGGGGGTCAATTCT 60.921 60.000 0.00 0.00 0.00 2.40
676 678 1.214305 TGGGGAGGGGGTCAATTCTG 61.214 60.000 0.00 0.00 0.00 3.02
677 679 1.615262 GGGAGGGGGTCAATTCTGG 59.385 63.158 0.00 0.00 0.00 3.86
678 680 0.919289 GGGAGGGGGTCAATTCTGGA 60.919 60.000 0.00 0.00 0.00 3.86
679 681 0.999712 GGAGGGGGTCAATTCTGGAA 59.000 55.000 0.00 0.00 0.00 3.53
680 682 1.064389 GGAGGGGGTCAATTCTGGAAG 60.064 57.143 0.00 0.00 0.00 3.46
681 683 1.916181 GAGGGGGTCAATTCTGGAAGA 59.084 52.381 0.00 0.00 44.68 2.87
694 696 3.843422 TCTGGAAGAATTGCCCAAAAGA 58.157 40.909 0.00 0.00 42.31 2.52
695 697 4.222336 TCTGGAAGAATTGCCCAAAAGAA 58.778 39.130 0.00 0.00 42.31 2.52
696 698 4.039124 TCTGGAAGAATTGCCCAAAAGAAC 59.961 41.667 0.00 0.00 42.31 3.01
697 699 3.966665 TGGAAGAATTGCCCAAAAGAACT 59.033 39.130 0.00 0.00 34.47 3.01
698 700 4.202243 TGGAAGAATTGCCCAAAAGAACTG 60.202 41.667 0.00 0.00 34.47 3.16
699 701 4.309933 GAAGAATTGCCCAAAAGAACTGG 58.690 43.478 0.00 0.00 0.00 4.00
700 702 2.037641 AGAATTGCCCAAAAGAACTGGC 59.962 45.455 0.00 0.00 44.27 4.85
701 703 0.686789 ATTGCCCAAAAGAACTGGCC 59.313 50.000 0.00 0.00 43.35 5.36
702 704 1.406860 TTGCCCAAAAGAACTGGCCC 61.407 55.000 0.00 0.00 43.35 5.80
703 705 1.533994 GCCCAAAAGAACTGGCCCT 60.534 57.895 0.00 0.00 37.94 5.19
704 706 0.251608 GCCCAAAAGAACTGGCCCTA 60.252 55.000 0.00 0.00 37.94 3.53
705 707 1.839424 CCCAAAAGAACTGGCCCTAG 58.161 55.000 0.00 0.00 32.10 3.02
706 708 1.616994 CCCAAAAGAACTGGCCCTAGG 60.617 57.143 0.06 0.06 32.10 3.02
729 731 2.331132 GGAGTGTCTTGCCTGCTGC 61.331 63.158 0.00 0.00 41.77 5.25
730 732 1.302351 GAGTGTCTTGCCTGCTGCT 60.302 57.895 0.00 0.00 42.00 4.24
755 757 8.995027 TTAACATTTTCTGCCTCCATATATGT 57.005 30.769 11.73 0.00 0.00 2.29
758 760 6.835488 ACATTTTCTGCCTCCATATATGTTGT 59.165 34.615 11.73 0.00 0.00 3.32
825 827 4.194640 ACATGATGTGGTGCTGAGATTAC 58.805 43.478 0.00 0.00 0.00 1.89
844 846 5.487153 TTACTTTGTTTTCGCTGCAGTTA 57.513 34.783 16.64 0.15 0.00 2.24
868 870 3.490526 CAGTTAACCACAAGTGCATTTGC 59.509 43.478 20.63 3.91 42.50 3.68
885 887 1.610363 TGCGTGCTAATTCCCAACAA 58.390 45.000 0.00 0.00 0.00 2.83
886 888 2.166829 TGCGTGCTAATTCCCAACAAT 58.833 42.857 0.00 0.00 0.00 2.71
887 889 3.348119 TGCGTGCTAATTCCCAACAATA 58.652 40.909 0.00 0.00 0.00 1.90
888 890 3.951037 TGCGTGCTAATTCCCAACAATAT 59.049 39.130 0.00 0.00 0.00 1.28
889 891 4.202000 TGCGTGCTAATTCCCAACAATATG 60.202 41.667 0.00 0.00 0.00 1.78
890 892 4.290155 CGTGCTAATTCCCAACAATATGC 58.710 43.478 0.00 0.00 0.00 3.14
891 893 4.620982 GTGCTAATTCCCAACAATATGCC 58.379 43.478 0.00 0.00 0.00 4.40
892 894 4.099266 GTGCTAATTCCCAACAATATGCCA 59.901 41.667 0.00 0.00 0.00 4.92
893 895 4.099266 TGCTAATTCCCAACAATATGCCAC 59.901 41.667 0.00 0.00 0.00 5.01
894 896 4.501400 GCTAATTCCCAACAATATGCCACC 60.501 45.833 0.00 0.00 0.00 4.61
895 897 1.859302 TTCCCAACAATATGCCACCC 58.141 50.000 0.00 0.00 0.00 4.61
896 898 0.395036 TCCCAACAATATGCCACCCG 60.395 55.000 0.00 0.00 0.00 5.28
897 899 1.437160 CCAACAATATGCCACCCGC 59.563 57.895 0.00 0.00 38.31 6.13
911 913 1.077501 CCCGCAACTCATCCACCAT 60.078 57.895 0.00 0.00 0.00 3.55
916 918 2.216898 GCAACTCATCCACCATAGCTC 58.783 52.381 0.00 0.00 0.00 4.09
931 936 2.195567 GCTCAGCAGCAACCACCAA 61.196 57.895 0.00 0.00 46.06 3.67
949 954 2.477825 CAATGCCATAGACACTCTCGG 58.522 52.381 0.00 0.00 0.00 4.63
951 956 2.430248 TGCCATAGACACTCTCGGTA 57.570 50.000 0.00 0.00 0.00 4.02
957 962 4.863131 CCATAGACACTCTCGGTAAACAAC 59.137 45.833 0.00 0.00 0.00 3.32
983 989 4.497473 AGCTTATCAGTCTAGCTAAGCG 57.503 45.455 7.70 0.00 46.68 4.68
1024 1033 4.223477 TGGGGTACTCTAAAAACATAGCGT 59.777 41.667 0.00 0.00 0.00 5.07
1026 1035 4.807834 GGGTACTCTAAAAACATAGCGTCC 59.192 45.833 0.00 0.00 0.00 4.79
1054 1063 2.348888 GCCATGCTGCTCCTTGCTT 61.349 57.895 0.00 0.00 43.37 3.91
1066 1075 1.302033 CTTGCTTCAGCCGTCCTGT 60.302 57.895 0.00 0.00 42.38 4.00
1072 1081 2.997315 CAGCCGTCCTGTCCTCCA 60.997 66.667 0.00 0.00 36.79 3.86
1078 1087 1.889530 CGTCCTGTCCTCCAACCCTC 61.890 65.000 0.00 0.00 0.00 4.30
1113 1122 3.052620 CTGTGTCGCCGACCTCGAT 62.053 63.158 15.60 0.00 43.02 3.59
1142 1151 2.047274 CTCGGTGAACGGGCACAT 60.047 61.111 11.25 0.00 44.45 3.21
1194 5525 3.650461 ACTTCCTCTTCTCTTCCAAGCTT 59.350 43.478 0.00 0.00 0.00 3.74
1523 5854 2.990479 GGCCTCCATGGTCGTCTT 59.010 61.111 12.58 0.00 38.35 3.01
1538 5869 2.064762 CGTCTTCTTCAACAGCCAGAG 58.935 52.381 0.00 0.00 0.00 3.35
1543 5874 2.416107 CTTCAACAGCCAGAGCCCCA 62.416 60.000 0.00 0.00 41.25 4.96
1595 5926 4.374584 CAACCCGCCCATCCCCAA 62.375 66.667 0.00 0.00 0.00 4.12
1596 5927 3.595758 AACCCGCCCATCCCCAAA 61.596 61.111 0.00 0.00 0.00 3.28
1650 5981 1.202722 GGGGTCGTGGAACTTCTCAAA 60.203 52.381 0.00 0.00 31.75 2.69
1833 6180 2.097038 CCTCGCAGTTCAGCCTTCG 61.097 63.158 0.00 0.00 0.00 3.79
1846 6193 1.485066 AGCCTTCGGAACCAATACGAT 59.515 47.619 0.00 0.00 36.43 3.73
1938 6286 3.540314 TGCAAGTTTTTCATGTTGCCT 57.460 38.095 12.34 0.00 43.81 4.75
1944 6292 6.686679 GCAAGTTTTTCATGTTGCCTTTTTAC 59.313 34.615 5.41 0.00 39.52 2.01
1971 6319 3.813529 AACATGCTCTCAAGTTTACGC 57.186 42.857 0.00 0.00 30.82 4.42
2008 6359 3.119495 GCGCAATCTCCAAACCATTTAGT 60.119 43.478 0.30 0.00 0.00 2.24
2066 6418 7.759886 TCAAAATGTAAAATGTGTCGGTTCAAA 59.240 29.630 0.00 0.00 0.00 2.69
2067 6419 8.547069 CAAAATGTAAAATGTGTCGGTTCAAAT 58.453 29.630 0.00 0.00 0.00 2.32
2068 6420 8.655651 AAATGTAAAATGTGTCGGTTCAAATT 57.344 26.923 0.00 0.00 0.00 1.82
2069 6421 8.655651 AATGTAAAATGTGTCGGTTCAAATTT 57.344 26.923 0.00 0.00 36.98 1.82
2070 6422 7.456684 TGTAAAATGTGTCGGTTCAAATTTG 57.543 32.000 12.15 12.15 35.99 2.32
2071 6423 7.258441 TGTAAAATGTGTCGGTTCAAATTTGA 58.742 30.769 16.91 16.91 35.99 2.69
2072 6424 7.759886 TGTAAAATGTGTCGGTTCAAATTTGAA 59.240 29.630 26.01 26.01 44.31 2.69
2085 6437 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
2086 6438 5.966503 TCAAATTTGAACTAAAACCACGACG 59.033 36.000 18.45 0.00 33.55 5.12
2087 6439 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
2088 6440 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
2089 6441 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
2090 6442 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
2091 6443 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
2092 6444 5.347342 TGAACTAAAACCACGACGAGTAAA 58.653 37.500 0.00 0.00 0.00 2.01
2093 6445 5.984926 TGAACTAAAACCACGACGAGTAAAT 59.015 36.000 0.00 0.00 0.00 1.40
2094 6446 6.479660 TGAACTAAAACCACGACGAGTAAATT 59.520 34.615 0.00 0.00 0.00 1.82
2095 6447 6.219302 ACTAAAACCACGACGAGTAAATTG 57.781 37.500 0.00 0.00 0.00 2.32
2096 6448 4.477302 AAAACCACGACGAGTAAATTGG 57.523 40.909 0.00 0.00 0.00 3.16
2097 6449 3.389925 AACCACGACGAGTAAATTGGA 57.610 42.857 0.00 0.00 0.00 3.53
2098 6450 3.389925 ACCACGACGAGTAAATTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
2099 6451 3.062042 ACCACGACGAGTAAATTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
2100 6452 2.091588 CCACGACGAGTAAATTGGAACG 59.908 50.000 0.00 0.00 0.00 3.95
2101 6453 2.091588 CACGACGAGTAAATTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
2102 6454 2.030007 ACGACGAGTAAATTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
2103 6455 2.597305 CGACGAGTAAATTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
2104 6456 2.928116 GACGAGTAAATTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2105 6457 2.277084 CGAGTAAATTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2106 6458 2.093869 CGAGTAAATTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
2129 6481 7.201145 GGAGTAGCAATCTAGAAAATGTACGA 58.799 38.462 0.00 0.00 0.00 3.43
2145 6497 5.018539 TGTACGAAAATATGAGAGTGGGG 57.981 43.478 0.00 0.00 0.00 4.96
2169 6522 0.756294 CTACCATGCACGGGGTATCA 59.244 55.000 2.80 0.00 38.87 2.15
2171 6524 1.887242 CCATGCACGGGGTATCACG 60.887 63.158 0.00 0.00 0.00 4.35
2179 6532 4.463539 TGCACGGGGTATCACGTATATATT 59.536 41.667 1.24 0.00 42.04 1.28
2181 6534 5.345702 CACGGGGTATCACGTATATATTGG 58.654 45.833 1.24 0.00 42.04 3.16
2246 6599 9.442047 TTTGGTTGTTGTCAAATTAATCTTGTT 57.558 25.926 0.00 0.00 35.20 2.83
2284 6637 9.765795 TGTTTAGGTTTCTTTTTCTTGTTTCAA 57.234 25.926 0.00 0.00 0.00 2.69
2294 6647 9.567848 TCTTTTTCTTGTTTCAAAGTGTATCAC 57.432 29.630 0.00 0.00 34.10 3.06
2299 6652 6.708949 TCTTGTTTCAAAGTGTATCACCCTAC 59.291 38.462 0.00 0.00 34.49 3.18
2332 6685 9.801873 ATGTACCAATAATAAAATGCACTTGTC 57.198 29.630 0.00 0.00 0.00 3.18
2347 6700 7.076842 TGCACTTGTCTTAGATTAGATTTGC 57.923 36.000 1.53 0.00 0.00 3.68
2380 6733 5.034152 GCGATACACAACAAACCATTATGG 58.966 41.667 10.08 10.08 45.02 2.74
2399 6752 4.336889 TGGTACACTTCTGAACAAGAGG 57.663 45.455 0.00 0.00 37.99 3.69
2472 6825 5.573337 AAAGGTAGCATGAATCTCAAAGC 57.427 39.130 0.00 0.00 33.46 3.51
2473 6826 4.226427 AGGTAGCATGAATCTCAAAGCA 57.774 40.909 0.00 0.00 35.02 3.91
2478 6831 5.854010 AGCATGAATCTCAAAGCAATCAT 57.146 34.783 0.00 0.00 35.02 2.45
2482 6835 6.701841 GCATGAATCTCAAAGCAATCATTGAT 59.298 34.615 0.00 0.00 35.20 2.57
2513 6866 5.526115 CCATGCATGGTAGAACATCATTTC 58.474 41.667 33.68 0.00 43.05 2.17
2515 6868 6.183360 CCATGCATGGTAGAACATCATTTCTT 60.183 38.462 33.68 0.00 43.05 2.52
2517 6870 5.945191 TGCATGGTAGAACATCATTTCTTGA 59.055 36.000 0.00 0.00 37.09 3.02
2534 6887 4.863491 TCTTGAAAAAGCATGCTCTCAAC 58.137 39.130 22.93 12.14 0.00 3.18
2541 6894 6.579666 AAAAGCATGCTCTCAACTTATTGA 57.420 33.333 22.93 0.00 42.73 2.57
2542 6895 6.579666 AAAGCATGCTCTCAACTTATTGAA 57.420 33.333 22.93 0.00 44.28 2.69
2550 6903 6.654582 TGCTCTCAACTTATTGAAATGCACTA 59.345 34.615 0.00 0.00 44.28 2.74
2574 6927 9.322776 CTACAAATATATCGATTCAAGCTTTGC 57.677 33.333 1.71 0.00 0.00 3.68
2576 6929 2.737467 TATCGATTCAAGCTTTGCGC 57.263 45.000 1.71 0.00 39.57 6.09
2584 6937 4.898829 TTCAAGCTTTGCGCATATATGT 57.101 36.364 12.75 0.00 42.61 2.29
2602 6955 9.017509 CATATATGTAAATGCATCCACCTCTTT 57.982 33.333 0.00 0.00 0.00 2.52
2607 6960 5.397142 AAATGCATCCACCTCTTTCTTTC 57.603 39.130 0.00 0.00 0.00 2.62
2618 6971 7.723616 TCCACCTCTTTCTTTCATTGTTTCATA 59.276 33.333 0.00 0.00 0.00 2.15
2648 7001 1.506262 CAATTTCCCGGACAAGGCG 59.494 57.895 0.73 0.00 0.00 5.52
2653 7006 3.771160 CCCGGACAAGGCGCTAGT 61.771 66.667 7.64 3.06 0.00 2.57
2655 7008 2.509336 CGGACAAGGCGCTAGTGG 60.509 66.667 7.64 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
204 205 3.134081 ACCGAAGTTTGAAGGAGACAAGA 59.866 43.478 0.00 0.00 0.00 3.02
242 243 8.826765 TCAAGAACTAGGGATTAGAACAATCTT 58.173 33.333 0.00 0.00 37.10 2.40
505 507 3.324846 AGAATTTCCCAAAAGAACTGGCC 59.675 43.478 0.00 0.00 32.10 5.36
506 508 4.560128 GAGAATTTCCCAAAAGAACTGGC 58.440 43.478 0.00 0.00 32.10 4.85
507 509 5.139435 GGAGAATTTCCCAAAAGAACTGG 57.861 43.478 0.00 0.00 40.37 4.00
523 525 3.457749 GAGAGGGTCAATTCTGGGAGAAT 59.542 47.826 0.00 0.00 46.22 2.40
524 526 2.840651 GAGAGGGTCAATTCTGGGAGAA 59.159 50.000 0.00 0.00 38.78 2.87
525 527 2.472029 GAGAGGGTCAATTCTGGGAGA 58.528 52.381 0.00 0.00 0.00 3.71
526 528 1.488393 GGAGAGGGTCAATTCTGGGAG 59.512 57.143 0.00 0.00 0.00 4.30
527 529 1.584724 GGAGAGGGTCAATTCTGGGA 58.415 55.000 0.00 0.00 0.00 4.37
528 530 0.548510 GGGAGAGGGTCAATTCTGGG 59.451 60.000 0.00 0.00 0.00 4.45
529 531 0.548510 GGGGAGAGGGTCAATTCTGG 59.451 60.000 0.00 0.00 0.00 3.86
530 532 1.211457 CTGGGGAGAGGGTCAATTCTG 59.789 57.143 0.00 0.00 0.00 3.02
531 533 1.589414 CTGGGGAGAGGGTCAATTCT 58.411 55.000 0.00 0.00 0.00 2.40
532 534 0.106967 GCTGGGGAGAGGGTCAATTC 60.107 60.000 0.00 0.00 0.00 2.17
533 535 0.551131 AGCTGGGGAGAGGGTCAATT 60.551 55.000 0.00 0.00 0.00 2.32
534 536 0.551131 AAGCTGGGGAGAGGGTCAAT 60.551 55.000 0.00 0.00 0.00 2.57
535 537 1.151810 AAGCTGGGGAGAGGGTCAA 60.152 57.895 0.00 0.00 0.00 3.18
536 538 1.613630 GAAGCTGGGGAGAGGGTCA 60.614 63.158 0.00 0.00 0.00 4.02
537 539 1.306568 AGAAGCTGGGGAGAGGGTC 60.307 63.158 0.00 0.00 0.00 4.46
538 540 1.306568 GAGAAGCTGGGGAGAGGGT 60.307 63.158 0.00 0.00 0.00 4.34
539 541 2.069430 GGAGAAGCTGGGGAGAGGG 61.069 68.421 0.00 0.00 0.00 4.30
540 542 2.069430 GGGAGAAGCTGGGGAGAGG 61.069 68.421 0.00 0.00 0.00 3.69
541 543 1.306482 TGGGAGAAGCTGGGGAGAG 60.306 63.158 0.00 0.00 0.00 3.20
542 544 1.306482 CTGGGAGAAGCTGGGGAGA 60.306 63.158 0.00 0.00 0.00 3.71
543 545 0.911525 TTCTGGGAGAAGCTGGGGAG 60.912 60.000 0.00 0.00 29.50 4.30
544 546 0.253347 ATTCTGGGAGAAGCTGGGGA 60.253 55.000 0.00 0.00 37.69 4.81
545 547 0.627986 AATTCTGGGAGAAGCTGGGG 59.372 55.000 0.00 0.00 37.69 4.96
546 548 1.005215 ACAATTCTGGGAGAAGCTGGG 59.995 52.381 0.00 0.00 37.69 4.45
547 549 2.290514 TGACAATTCTGGGAGAAGCTGG 60.291 50.000 0.00 0.00 37.69 4.85
548 550 2.746362 GTGACAATTCTGGGAGAAGCTG 59.254 50.000 0.00 0.00 37.69 4.24
549 551 2.641815 AGTGACAATTCTGGGAGAAGCT 59.358 45.455 0.00 0.00 37.69 3.74
550 552 3.006247 GAGTGACAATTCTGGGAGAAGC 58.994 50.000 0.00 0.00 37.69 3.86
551 553 3.008375 TGGAGTGACAATTCTGGGAGAAG 59.992 47.826 0.00 0.00 37.69 2.85
552 554 2.978978 TGGAGTGACAATTCTGGGAGAA 59.021 45.455 0.00 0.00 38.78 2.87
553 555 2.619931 TGGAGTGACAATTCTGGGAGA 58.380 47.619 0.00 0.00 0.00 3.71
554 556 3.641434 ATGGAGTGACAATTCTGGGAG 57.359 47.619 0.00 0.00 0.00 4.30
555 557 4.387026 AAATGGAGTGACAATTCTGGGA 57.613 40.909 0.00 0.00 0.00 4.37
556 558 5.244626 AGAAAAATGGAGTGACAATTCTGGG 59.755 40.000 0.00 0.00 0.00 4.45
557 559 6.336842 AGAAAAATGGAGTGACAATTCTGG 57.663 37.500 0.00 0.00 0.00 3.86
558 560 9.185192 GTAAAGAAAAATGGAGTGACAATTCTG 57.815 33.333 0.00 0.00 0.00 3.02
559 561 8.912988 TGTAAAGAAAAATGGAGTGACAATTCT 58.087 29.630 0.00 0.00 0.00 2.40
560 562 9.528018 TTGTAAAGAAAAATGGAGTGACAATTC 57.472 29.630 0.00 0.00 0.00 2.17
563 565 9.528018 GAATTGTAAAGAAAAATGGAGTGACAA 57.472 29.630 0.00 0.00 0.00 3.18
564 566 8.141268 GGAATTGTAAAGAAAAATGGAGTGACA 58.859 33.333 0.00 0.00 0.00 3.58
565 567 8.360390 AGGAATTGTAAAGAAAAATGGAGTGAC 58.640 33.333 0.00 0.00 0.00 3.67
566 568 8.477419 AGGAATTGTAAAGAAAAATGGAGTGA 57.523 30.769 0.00 0.00 0.00 3.41
567 569 9.846248 CTAGGAATTGTAAAGAAAAATGGAGTG 57.154 33.333 0.00 0.00 0.00 3.51
568 570 8.523658 GCTAGGAATTGTAAAGAAAAATGGAGT 58.476 33.333 0.00 0.00 0.00 3.85
569 571 8.743714 AGCTAGGAATTGTAAAGAAAAATGGAG 58.256 33.333 0.00 0.00 0.00 3.86
570 572 8.650143 AGCTAGGAATTGTAAAGAAAAATGGA 57.350 30.769 0.00 0.00 0.00 3.41
577 579 9.886132 CCTTAACTAGCTAGGAATTGTAAAGAA 57.114 33.333 24.35 0.50 0.00 2.52
578 580 9.043548 ACCTTAACTAGCTAGGAATTGTAAAGA 57.956 33.333 24.35 0.00 33.21 2.52
579 581 9.315525 GACCTTAACTAGCTAGGAATTGTAAAG 57.684 37.037 24.35 13.62 33.21 1.85
580 582 9.043548 AGACCTTAACTAGCTAGGAATTGTAAA 57.956 33.333 24.35 6.07 33.21 2.01
581 583 8.605325 AGACCTTAACTAGCTAGGAATTGTAA 57.395 34.615 24.35 10.98 33.21 2.41
582 584 9.705103 TTAGACCTTAACTAGCTAGGAATTGTA 57.295 33.333 24.35 8.34 33.21 2.41
583 585 8.605325 TTAGACCTTAACTAGCTAGGAATTGT 57.395 34.615 24.35 14.92 33.21 2.71
587 589 9.933240 ACTAATTAGACCTTAACTAGCTAGGAA 57.067 33.333 24.35 16.07 33.21 3.36
588 590 9.933240 AACTAATTAGACCTTAACTAGCTAGGA 57.067 33.333 24.35 9.48 33.21 2.94
592 594 9.933240 TCCTAACTAATTAGACCTTAACTAGCT 57.067 33.333 19.38 0.00 40.38 3.32
626 628 6.213195 TCCCAGAATTGCCACTTGATATTTTT 59.787 34.615 0.00 0.00 0.00 1.94
627 629 5.721000 TCCCAGAATTGCCACTTGATATTTT 59.279 36.000 0.00 0.00 0.00 1.82
628 630 5.271598 TCCCAGAATTGCCACTTGATATTT 58.728 37.500 0.00 0.00 0.00 1.40
629 631 4.870636 TCCCAGAATTGCCACTTGATATT 58.129 39.130 0.00 0.00 0.00 1.28
630 632 4.166725 TCTCCCAGAATTGCCACTTGATAT 59.833 41.667 0.00 0.00 0.00 1.63
631 633 3.523157 TCTCCCAGAATTGCCACTTGATA 59.477 43.478 0.00 0.00 0.00 2.15
632 634 2.309755 TCTCCCAGAATTGCCACTTGAT 59.690 45.455 0.00 0.00 0.00 2.57
633 635 1.704628 TCTCCCAGAATTGCCACTTGA 59.295 47.619 0.00 0.00 0.00 3.02
634 636 2.205022 TCTCCCAGAATTGCCACTTG 57.795 50.000 0.00 0.00 0.00 3.16
635 637 2.800250 CTTCTCCCAGAATTGCCACTT 58.200 47.619 0.00 0.00 33.13 3.16
636 638 1.615384 GCTTCTCCCAGAATTGCCACT 60.615 52.381 0.00 0.00 33.13 4.00
637 639 0.813821 GCTTCTCCCAGAATTGCCAC 59.186 55.000 0.00 0.00 33.13 5.01
638 640 0.700564 AGCTTCTCCCAGAATTGCCA 59.299 50.000 0.00 0.00 33.13 4.92
639 641 1.101331 CAGCTTCTCCCAGAATTGCC 58.899 55.000 0.00 0.00 33.13 4.52
640 642 1.101331 CCAGCTTCTCCCAGAATTGC 58.899 55.000 0.00 0.00 33.13 3.56
641 643 1.684248 CCCCAGCTTCTCCCAGAATTG 60.684 57.143 0.00 0.00 33.13 2.32
642 644 0.627986 CCCCAGCTTCTCCCAGAATT 59.372 55.000 0.00 0.00 33.13 2.17
643 645 0.253347 TCCCCAGCTTCTCCCAGAAT 60.253 55.000 0.00 0.00 33.13 2.40
644 646 0.911525 CTCCCCAGCTTCTCCCAGAA 60.912 60.000 0.00 0.00 32.50 3.02
645 647 1.306482 CTCCCCAGCTTCTCCCAGA 60.306 63.158 0.00 0.00 0.00 3.86
646 648 2.373707 CCTCCCCAGCTTCTCCCAG 61.374 68.421 0.00 0.00 0.00 4.45
647 649 2.285668 CCTCCCCAGCTTCTCCCA 60.286 66.667 0.00 0.00 0.00 4.37
648 650 3.093172 CCCTCCCCAGCTTCTCCC 61.093 72.222 0.00 0.00 0.00 4.30
649 651 3.093172 CCCCTCCCCAGCTTCTCC 61.093 72.222 0.00 0.00 0.00 3.71
650 652 3.093172 CCCCCTCCCCAGCTTCTC 61.093 72.222 0.00 0.00 0.00 2.87
651 653 3.952799 GACCCCCTCCCCAGCTTCT 62.953 68.421 0.00 0.00 0.00 2.85
652 654 3.412408 GACCCCCTCCCCAGCTTC 61.412 72.222 0.00 0.00 0.00 3.86
653 655 3.829311 TTGACCCCCTCCCCAGCTT 62.829 63.158 0.00 0.00 0.00 3.74
654 656 3.603330 ATTGACCCCCTCCCCAGCT 62.603 63.158 0.00 0.00 0.00 4.24
655 657 2.573893 GAATTGACCCCCTCCCCAGC 62.574 65.000 0.00 0.00 0.00 4.85
656 658 0.921256 AGAATTGACCCCCTCCCCAG 60.921 60.000 0.00 0.00 0.00 4.45
657 659 1.165782 AGAATTGACCCCCTCCCCA 59.834 57.895 0.00 0.00 0.00 4.96
658 660 1.615262 CAGAATTGACCCCCTCCCC 59.385 63.158 0.00 0.00 0.00 4.81
659 661 0.919289 TCCAGAATTGACCCCCTCCC 60.919 60.000 0.00 0.00 0.00 4.30
660 662 0.999712 TTCCAGAATTGACCCCCTCC 59.000 55.000 0.00 0.00 0.00 4.30
661 663 1.916181 TCTTCCAGAATTGACCCCCTC 59.084 52.381 0.00 0.00 0.00 4.30
662 664 2.059756 TCTTCCAGAATTGACCCCCT 57.940 50.000 0.00 0.00 0.00 4.79
663 665 2.899303 TTCTTCCAGAATTGACCCCC 57.101 50.000 0.00 0.00 0.00 5.40
671 673 4.840115 TCTTTTGGGCAATTCTTCCAGAAT 59.160 37.500 0.00 0.00 46.22 2.40
672 674 4.222336 TCTTTTGGGCAATTCTTCCAGAA 58.778 39.130 0.00 0.00 38.78 3.02
673 675 3.843422 TCTTTTGGGCAATTCTTCCAGA 58.157 40.909 0.00 0.00 31.59 3.86
674 676 4.039609 AGTTCTTTTGGGCAATTCTTCCAG 59.960 41.667 0.00 0.00 31.59 3.86
675 677 3.966665 AGTTCTTTTGGGCAATTCTTCCA 59.033 39.130 0.00 0.00 0.00 3.53
676 678 4.309933 CAGTTCTTTTGGGCAATTCTTCC 58.690 43.478 0.00 0.00 0.00 3.46
677 679 4.309933 CCAGTTCTTTTGGGCAATTCTTC 58.690 43.478 0.00 0.00 31.87 2.87
678 680 3.494924 GCCAGTTCTTTTGGGCAATTCTT 60.495 43.478 0.00 0.00 45.70 2.52
679 681 2.037641 GCCAGTTCTTTTGGGCAATTCT 59.962 45.455 0.00 0.00 45.70 2.40
680 682 2.416747 GCCAGTTCTTTTGGGCAATTC 58.583 47.619 0.00 0.00 45.70 2.17
681 683 2.549064 GCCAGTTCTTTTGGGCAATT 57.451 45.000 0.00 0.00 45.70 2.32
686 688 1.616994 CCTAGGGCCAGTTCTTTTGGG 60.617 57.143 6.18 0.00 36.19 4.12
687 689 1.839424 CCTAGGGCCAGTTCTTTTGG 58.161 55.000 6.18 0.00 38.78 3.28
688 690 1.177401 GCCTAGGGCCAGTTCTTTTG 58.823 55.000 11.72 0.00 44.06 2.44
689 691 3.672066 GCCTAGGGCCAGTTCTTTT 57.328 52.632 11.72 0.00 44.06 2.27
700 702 0.032615 AGACACTCCTCAGCCTAGGG 60.033 60.000 11.72 0.00 37.24 3.53
701 703 1.480137 CAAGACACTCCTCAGCCTAGG 59.520 57.143 3.67 3.67 38.06 3.02
702 704 1.134848 GCAAGACACTCCTCAGCCTAG 60.135 57.143 0.00 0.00 0.00 3.02
703 705 0.898320 GCAAGACACTCCTCAGCCTA 59.102 55.000 0.00 0.00 0.00 3.93
704 706 1.676384 GCAAGACACTCCTCAGCCT 59.324 57.895 0.00 0.00 0.00 4.58
705 707 1.376553 GGCAAGACACTCCTCAGCC 60.377 63.158 0.00 0.00 32.63 4.85
706 708 0.673022 CAGGCAAGACACTCCTCAGC 60.673 60.000 0.00 0.00 0.00 4.26
729 731 9.071276 ACATATATGGAGGCAGAAAATGTTAAG 57.929 33.333 16.96 0.00 0.00 1.85
730 732 8.995027 ACATATATGGAGGCAGAAAATGTTAA 57.005 30.769 16.96 0.00 0.00 2.01
755 757 3.823873 ACGGAAGGAAACATATGCAACAA 59.176 39.130 1.58 0.00 0.00 2.83
758 760 2.163412 GCACGGAAGGAAACATATGCAA 59.837 45.455 1.58 0.00 0.00 4.08
825 827 4.536065 TGATAACTGCAGCGAAAACAAAG 58.464 39.130 15.27 0.00 0.00 2.77
844 846 5.531634 CAAATGCACTTGTGGTTAACTGAT 58.468 37.500 5.42 0.00 0.00 2.90
868 870 4.290155 GCATATTGTTGGGAATTAGCACG 58.710 43.478 0.00 0.00 0.00 5.34
889 891 3.134127 GGATGAGTTGCGGGTGGC 61.134 66.667 0.00 0.00 43.96 5.01
890 892 2.040544 GTGGATGAGTTGCGGGTGG 61.041 63.158 0.00 0.00 0.00 4.61
891 893 2.040544 GGTGGATGAGTTGCGGGTG 61.041 63.158 0.00 0.00 0.00 4.61
892 894 1.852157 ATGGTGGATGAGTTGCGGGT 61.852 55.000 0.00 0.00 0.00 5.28
893 895 0.180171 TATGGTGGATGAGTTGCGGG 59.820 55.000 0.00 0.00 0.00 6.13
894 896 1.586422 CTATGGTGGATGAGTTGCGG 58.414 55.000 0.00 0.00 0.00 5.69
895 897 0.940126 GCTATGGTGGATGAGTTGCG 59.060 55.000 0.00 0.00 0.00 4.85
896 898 2.216898 GAGCTATGGTGGATGAGTTGC 58.783 52.381 0.00 0.00 0.00 4.17
897 899 3.464907 CTGAGCTATGGTGGATGAGTTG 58.535 50.000 0.00 0.00 0.00 3.16
911 913 1.003355 GGTGGTTGCTGCTGAGCTA 60.003 57.895 5.83 0.00 46.39 3.32
916 918 1.373748 GCATTGGTGGTTGCTGCTG 60.374 57.895 0.00 0.00 35.95 4.41
931 936 1.781786 ACCGAGAGTGTCTATGGCAT 58.218 50.000 4.88 4.88 0.00 4.40
949 954 7.097834 AGACTGATAAGCTACAGGTTGTTTAC 58.902 38.462 16.13 0.00 38.30 2.01
951 956 6.115448 AGACTGATAAGCTACAGGTTGTTT 57.885 37.500 16.13 0.00 38.30 2.83
957 962 6.885952 TTAGCTAGACTGATAAGCTACAGG 57.114 41.667 16.13 3.94 45.83 4.00
966 971 3.003793 CAGCACGCTTAGCTAGACTGATA 59.996 47.826 1.76 0.00 41.14 2.15
1054 1063 2.680352 GGAGGACAGGACGGCTGA 60.680 66.667 0.00 0.00 0.00 4.26
1066 1075 1.229529 GAGGGTGAGGGTTGGAGGA 60.230 63.158 0.00 0.00 0.00 3.71
1072 1081 1.229658 CCTGGAGAGGGTGAGGGTT 60.230 63.158 0.00 0.00 35.40 4.11
1078 1087 0.901124 CAGAAGTCCTGGAGAGGGTG 59.099 60.000 0.00 0.00 40.25 4.61
1142 1151 2.672651 CCGACATGGGCTTGCACA 60.673 61.111 0.00 0.00 0.00 4.57
1242 5573 2.338620 CACTCGGCCACGTTGAGA 59.661 61.111 11.11 0.00 41.85 3.27
1350 5681 1.032014 TCATCACGATGCCGATCTCA 58.968 50.000 1.99 0.00 38.65 3.27
1523 5854 1.376466 GGGCTCTGGCTGTTGAAGA 59.624 57.895 0.00 0.00 38.73 2.87
1543 5874 3.973516 TGGCACGAAGACGACGCT 61.974 61.111 0.00 0.00 42.66 5.07
1546 5877 1.007734 TGAGTGGCACGAAGACGAC 60.008 57.895 12.71 0.00 42.66 4.34
1629 5960 0.761323 TGAGAAGTTCCACGACCCCA 60.761 55.000 0.00 0.00 0.00 4.96
1650 5981 1.002134 CCCACCAGCGAACTTGGAT 60.002 57.895 0.00 0.00 39.08 3.41
1735 6069 8.051535 ACATGTCTTCTGTGGAGAATCATTAAT 58.948 33.333 0.00 0.00 37.58 1.40
1741 6076 7.044181 TGAATACATGTCTTCTGTGGAGAATC 58.956 38.462 20.69 0.00 37.58 2.52
1814 6157 1.004440 GAAGGCTGAACTGCGAGGT 60.004 57.895 0.00 0.00 0.00 3.85
1833 6180 7.257722 ACATTTCAATTCATCGTATTGGTTCC 58.742 34.615 0.00 0.00 34.51 3.62
1872 6219 8.812329 CCGTTCAATGAAAATAACAAAGACAAA 58.188 29.630 0.00 0.00 0.00 2.83
1874 6221 7.708051 TCCGTTCAATGAAAATAACAAAGACA 58.292 30.769 0.00 0.00 0.00 3.41
1923 6271 7.747888 ACTTGTAAAAAGGCAACATGAAAAAC 58.252 30.769 0.00 0.00 41.41 2.43
1927 6275 6.214191 TGACTTGTAAAAAGGCAACATGAA 57.786 33.333 0.00 0.00 41.41 2.57
1938 6286 7.094508 TGAGAGCATGTTTGACTTGTAAAAA 57.905 32.000 0.00 0.00 0.00 1.94
1944 6292 4.825546 ACTTGAGAGCATGTTTGACTTG 57.174 40.909 0.00 0.00 0.00 3.16
2066 6418 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
2067 6419 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
2068 6420 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
2069 6421 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
2070 6422 5.888412 TTTACTCGTCGTGGTTTTAGTTC 57.112 39.130 0.00 0.00 0.00 3.01
2071 6423 6.293027 CCAATTTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
2072 6424 5.178067 CCAATTTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
2073 6425 5.406175 TCCAATTTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
2074 6426 5.295950 TCCAATTTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
2075 6427 4.128643 TCCAATTTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
2076 6428 3.731089 TCCAATTTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
2077 6429 3.389925 TCCAATTTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
2078 6430 3.062042 GTTCCAATTTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
2079 6431 2.091588 CGTTCCAATTTACTCGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
2080 6432 2.091588 CCGTTCCAATTTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
2081 6433 2.030007 TCCGTTCCAATTTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
2082 6434 2.597305 CTCCGTTCCAATTTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
2083 6435 2.928116 CCTCCGTTCCAATTTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
2084 6436 2.354403 CCCTCCGTTCCAATTTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
2085 6437 2.093869 TCCCTCCGTTCCAATTTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
2086 6438 3.055312 ACTCCCTCCGTTCCAATTTACTC 60.055 47.826 0.00 0.00 0.00 2.59
2087 6439 2.910977 ACTCCCTCCGTTCCAATTTACT 59.089 45.455 0.00 0.00 0.00 2.24
2088 6440 3.345508 ACTCCCTCCGTTCCAATTTAC 57.654 47.619 0.00 0.00 0.00 2.01
2089 6441 3.118519 GCTACTCCCTCCGTTCCAATTTA 60.119 47.826 0.00 0.00 0.00 1.40
2090 6442 2.355818 GCTACTCCCTCCGTTCCAATTT 60.356 50.000 0.00 0.00 0.00 1.82
2091 6443 1.209747 GCTACTCCCTCCGTTCCAATT 59.790 52.381 0.00 0.00 0.00 2.32
2092 6444 0.831307 GCTACTCCCTCCGTTCCAAT 59.169 55.000 0.00 0.00 0.00 3.16
2093 6445 0.543410 TGCTACTCCCTCCGTTCCAA 60.543 55.000 0.00 0.00 0.00 3.53
2094 6446 0.543410 TTGCTACTCCCTCCGTTCCA 60.543 55.000 0.00 0.00 0.00 3.53
2095 6447 0.831307 ATTGCTACTCCCTCCGTTCC 59.169 55.000 0.00 0.00 0.00 3.62
2096 6448 1.757699 AGATTGCTACTCCCTCCGTTC 59.242 52.381 0.00 0.00 0.00 3.95
2097 6449 1.867363 AGATTGCTACTCCCTCCGTT 58.133 50.000 0.00 0.00 0.00 4.44
2098 6450 2.175069 TCTAGATTGCTACTCCCTCCGT 59.825 50.000 0.00 0.00 0.00 4.69
2099 6451 2.865079 TCTAGATTGCTACTCCCTCCG 58.135 52.381 0.00 0.00 0.00 4.63
2100 6452 5.615925 TTTTCTAGATTGCTACTCCCTCC 57.384 43.478 0.00 0.00 0.00 4.30
2101 6453 6.587273 ACATTTTCTAGATTGCTACTCCCTC 58.413 40.000 0.00 0.00 0.00 4.30
2102 6454 6.567602 ACATTTTCTAGATTGCTACTCCCT 57.432 37.500 0.00 0.00 0.00 4.20
2103 6455 6.421202 CGTACATTTTCTAGATTGCTACTCCC 59.579 42.308 0.00 0.00 0.00 4.30
2104 6456 7.201145 TCGTACATTTTCTAGATTGCTACTCC 58.799 38.462 0.00 0.00 0.00 3.85
2105 6457 8.630278 TTCGTACATTTTCTAGATTGCTACTC 57.370 34.615 0.00 0.00 0.00 2.59
2106 6458 8.997621 TTTCGTACATTTTCTAGATTGCTACT 57.002 30.769 0.00 0.00 0.00 2.57
2129 6481 6.890268 GGTAGAAAACCCCACTCTCATATTTT 59.110 38.462 0.00 0.00 43.16 1.82
2145 6497 0.808755 CCCCGTGCATGGTAGAAAAC 59.191 55.000 23.39 0.00 0.00 2.43
2161 6514 5.422970 TGGACCAATATATACGTGATACCCC 59.577 44.000 0.00 0.00 0.00 4.95
2169 6522 5.421056 ACGGATGATGGACCAATATATACGT 59.579 40.000 12.42 12.42 0.00 3.57
2171 6524 7.103641 ACAACGGATGATGGACCAATATATAC 58.896 38.462 0.00 0.00 0.00 1.47
2179 6532 1.819928 CAACAACGGATGATGGACCA 58.180 50.000 0.00 0.00 0.00 4.02
2181 6534 1.453155 AGCAACAACGGATGATGGAC 58.547 50.000 0.00 0.00 32.75 4.02
2258 6611 9.765795 TTGAAACAAGAAAAAGAAACCTAAACA 57.234 25.926 0.00 0.00 0.00 2.83
2263 6616 7.931407 ACACTTTGAAACAAGAAAAAGAAACCT 59.069 29.630 0.00 0.00 34.47 3.50
2284 6637 4.062490 ACTGAGGTAGGGTGATACACTT 57.938 45.455 0.00 0.00 31.80 3.16
2285 6638 3.759815 ACTGAGGTAGGGTGATACACT 57.240 47.619 0.00 0.00 35.11 3.55
2294 6647 6.989155 TTATTGGTACATACTGAGGTAGGG 57.011 41.667 0.00 0.00 39.30 3.53
2324 6677 7.065085 TCAGCAAATCTAATCTAAGACAAGTGC 59.935 37.037 0.00 0.00 0.00 4.40
2332 6685 8.012241 GCCGTTTATCAGCAAATCTAATCTAAG 58.988 37.037 0.00 0.00 0.00 2.18
2347 6700 3.615056 TGTTGTGTATCGCCGTTTATCAG 59.385 43.478 0.00 0.00 0.00 2.90
2380 6733 6.920569 TTTTCCTCTTGTTCAGAAGTGTAC 57.079 37.500 0.00 0.00 0.00 2.90
2394 6747 5.598417 AGTGTTGCATTAGGTTTTTCCTCTT 59.402 36.000 0.00 0.00 44.42 2.85
2399 6752 7.532682 TTCAAAGTGTTGCATTAGGTTTTTC 57.467 32.000 0.00 0.00 34.50 2.29
2448 6801 6.015180 TGCTTTGAGATTCATGCTACCTTTTT 60.015 34.615 0.00 0.00 30.95 1.94
2502 6855 7.013529 GCATGCTTTTTCAAGAAATGATGTTC 58.986 34.615 11.37 0.00 38.03 3.18
2513 6866 4.868067 AGTTGAGAGCATGCTTTTTCAAG 58.132 39.130 28.52 0.00 0.00 3.02
2515 6868 4.924305 AAGTTGAGAGCATGCTTTTTCA 57.076 36.364 23.61 21.40 0.00 2.69
2517 6870 6.985117 TCAATAAGTTGAGAGCATGCTTTTT 58.015 32.000 23.61 10.88 39.36 1.94
2550 6903 6.852853 CGCAAAGCTTGAATCGATATATTTGT 59.147 34.615 0.00 0.00 0.00 2.83
2556 6909 3.259207 GCGCAAAGCTTGAATCGATAT 57.741 42.857 0.30 0.00 44.04 1.63
2576 6929 8.571461 AAGAGGTGGATGCATTTACATATATG 57.429 34.615 11.29 11.29 0.00 1.78
2584 6937 6.009589 TGAAAGAAAGAGGTGGATGCATTTA 58.990 36.000 0.00 0.00 0.00 1.40
2618 6971 6.014156 TGTCCGGGAAATTGGTATTTTTCAAT 60.014 34.615 0.00 0.00 34.16 2.57
2628 6981 0.898326 GCCTTGTCCGGGAAATTGGT 60.898 55.000 0.00 0.00 0.00 3.67
2637 6990 2.509336 CACTAGCGCCTTGTCCGG 60.509 66.667 2.29 0.00 0.00 5.14
2648 7001 0.394899 AAATGCCCTCTGCCACTAGC 60.395 55.000 0.00 0.00 40.16 3.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.