Multiple sequence alignment - TraesCS4B01G033100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G033100 chr4B 100.000 2873 0 0 1 2873 24691639 24688767 0.000000e+00 5306.0
1 TraesCS4B01G033100 chr4B 83.750 1440 175 44 738 2158 24759056 24760455 0.000000e+00 1308.0
2 TraesCS4B01G033100 chr4B 83.198 1476 197 39 698 2159 24745366 24746804 0.000000e+00 1304.0
3 TraesCS4B01G033100 chr4B 82.203 1489 180 50 697 2159 24732844 24734273 0.000000e+00 1203.0
4 TraesCS4B01G033100 chr4B 84.091 352 25 15 675 1021 24703067 24702742 7.730000e-81 311.0
5 TraesCS4B01G033100 chr4B 92.958 71 4 1 2664 2734 24688846 24688777 5.060000e-18 102.0
6 TraesCS4B01G033100 chr4B 92.958 71 4 1 2794 2863 24688976 24688906 5.060000e-18 102.0
7 TraesCS4B01G033100 chr3B 93.263 1603 85 11 572 2159 452724734 452726328 0.000000e+00 2340.0
8 TraesCS4B01G033100 chr3B 87.466 1468 143 27 489 1932 452720906 452722356 0.000000e+00 1653.0
9 TraesCS4B01G033100 chr3B 79.336 542 54 30 2171 2695 452726295 452726795 7.680000e-86 327.0
10 TraesCS4B01G033100 chr3B 85.864 191 20 5 384 573 452724471 452724655 2.260000e-46 196.0
11 TraesCS4B01G033100 chr3B 93.407 91 5 1 2688 2777 452727071 452727161 1.800000e-27 134.0
12 TraesCS4B01G033100 chr4D 92.456 1193 78 9 970 2159 14843679 14842496 0.000000e+00 1694.0
13 TraesCS4B01G033100 chr4D 83.918 1710 198 46 482 2159 14848482 14846818 0.000000e+00 1563.0
14 TraesCS4B01G033100 chr4D 84.455 1486 163 45 704 2159 14914207 14915654 0.000000e+00 1402.0
15 TraesCS4B01G033100 chr4D 84.259 1423 174 36 699 2102 14908960 14910351 0.000000e+00 1341.0
16 TraesCS4B01G033100 chr4D 86.667 375 16 10 2171 2536 14515660 14516009 4.490000e-103 385.0
17 TraesCS4B01G033100 chr4D 85.526 380 15 11 2171 2539 14842524 14842174 7.570000e-96 361.0
18 TraesCS4B01G033100 chr4D 92.157 204 8 6 760 958 14514034 14514234 6.060000e-72 281.0
19 TraesCS4B01G033100 chr4D 92.157 204 9 5 760 958 14843858 14843657 6.060000e-72 281.0
20 TraesCS4B01G033100 chr4D 84.000 225 15 9 570 774 14844112 14843889 2.260000e-46 196.0
21 TraesCS4B01G033100 chr4D 89.474 133 10 3 2563 2694 14516005 14516134 6.370000e-37 165.0
22 TraesCS4B01G033100 chr4D 89.474 133 10 3 2563 2694 14842181 14842052 6.370000e-37 165.0
23 TraesCS4B01G033100 chr4D 92.222 90 7 0 2688 2777 14516384 14516473 8.360000e-26 128.0
24 TraesCS4B01G033100 chr4D 93.103 87 6 0 2694 2780 14841796 14841710 8.360000e-26 128.0
25 TraesCS4B01G033100 chr4A 84.938 1693 198 26 485 2159 456459040 456460693 0.000000e+00 1661.0
26 TraesCS4B01G033100 chr4A 84.711 1694 201 27 485 2159 586708098 586709752 0.000000e+00 1640.0
27 TraesCS4B01G033100 chr4A 93.496 246 10 1 1 240 628198511 628198756 7.570000e-96 361.0
28 TraesCS4B01G033100 chr3D 93.902 246 9 1 1 240 547312793 547313038 1.630000e-97 366.0
29 TraesCS4B01G033100 chr3D 93.496 246 9 2 1 240 114933040 114932796 2.720000e-95 359.0
30 TraesCS4B01G033100 chr3D 100.000 28 0 0 2116 2143 611018406 611018379 5.000000e-03 52.8
31 TraesCS4B01G033100 chr7D 93.878 245 9 1 2 240 495419842 495420086 5.850000e-97 364.0
32 TraesCS4B01G033100 chr6B 93.496 246 10 1 1 240 431793139 431793384 7.570000e-96 361.0
33 TraesCS4B01G033100 chr5D 92.520 254 11 3 1 247 228760141 228759889 9.790000e-95 357.0
34 TraesCS4B01G033100 chr5D 93.443 244 10 1 3 240 474745342 474745099 9.790000e-95 357.0
35 TraesCS4B01G033100 chr5D 93.089 246 11 1 1 240 451141598 451141353 3.520000e-94 355.0
36 TraesCS4B01G033100 chr5D 93.089 246 11 1 1 240 474738280 474738035 3.520000e-94 355.0
37 TraesCS4B01G033100 chr2D 100.000 31 0 0 2656 2686 558248884 558248854 1.110000e-04 58.4
38 TraesCS4B01G033100 chr7A 94.444 36 0 2 2116 2151 98094864 98094831 1.000000e-03 54.7
39 TraesCS4B01G033100 chr7B 100.000 28 0 0 2116 2143 86176004 86175977 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G033100 chr4B 24688767 24691639 2872 True 1836.666667 5306 95.305333 1 2873 3 chr4B.!!$R2 2872
1 TraesCS4B01G033100 chr4B 24759056 24760455 1399 False 1308.000000 1308 83.750000 738 2158 1 chr4B.!!$F3 1420
2 TraesCS4B01G033100 chr4B 24745366 24746804 1438 False 1304.000000 1304 83.198000 698 2159 1 chr4B.!!$F2 1461
3 TraesCS4B01G033100 chr4B 24732844 24734273 1429 False 1203.000000 1203 82.203000 697 2159 1 chr4B.!!$F1 1462
4 TraesCS4B01G033100 chr3B 452720906 452727161 6255 False 930.000000 2340 87.867200 384 2777 5 chr3B.!!$F1 2393
5 TraesCS4B01G033100 chr4D 14908960 14915654 6694 False 1371.500000 1402 84.357000 699 2159 2 chr4D.!!$F2 1460
6 TraesCS4B01G033100 chr4D 14841710 14848482 6772 True 626.857143 1694 88.662000 482 2780 7 chr4D.!!$R1 2298
7 TraesCS4B01G033100 chr4D 14514034 14516473 2439 False 239.750000 385 90.130000 760 2777 4 chr4D.!!$F1 2017
8 TraesCS4B01G033100 chr4A 456459040 456460693 1653 False 1661.000000 1661 84.938000 485 2159 1 chr4A.!!$F1 1674
9 TraesCS4B01G033100 chr4A 586708098 586709752 1654 False 1640.000000 1640 84.711000 485 2159 1 chr4A.!!$F2 1674

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
247 248 0.180406 ATGGTGGTTACCCGATGCTC 59.82 55.0 0.0 0.0 46.96 4.26 F
262 263 0.260230 TGCTCCCCAGAACAAACCAA 59.74 50.0 0.0 0.0 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1202 6827 0.828343 GAAGAGGATCGGGGTCGGAT 60.828 60.000 0.0 0.0 42.67 4.18 R
2091 12810 1.205064 CCGTGCAAACTTGAGAGCG 59.795 57.895 0.0 0.0 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.595762 GGGCAAGTAACATACCGATAGA 57.404 45.455 0.00 0.00 39.76 1.98
22 23 4.304939 GGGCAAGTAACATACCGATAGAC 58.695 47.826 0.00 0.00 39.76 2.59
23 24 4.202182 GGGCAAGTAACATACCGATAGACA 60.202 45.833 0.00 0.00 39.76 3.41
24 25 5.353938 GGCAAGTAACATACCGATAGACAA 58.646 41.667 0.00 0.00 39.76 3.18
25 26 5.813672 GGCAAGTAACATACCGATAGACAAA 59.186 40.000 0.00 0.00 39.76 2.83
26 27 6.018994 GGCAAGTAACATACCGATAGACAAAG 60.019 42.308 0.00 0.00 39.76 2.77
27 28 6.018994 GCAAGTAACATACCGATAGACAAAGG 60.019 42.308 0.00 0.00 39.76 3.11
28 29 6.158023 AGTAACATACCGATAGACAAAGGG 57.842 41.667 0.00 0.00 39.76 3.95
29 30 5.895534 AGTAACATACCGATAGACAAAGGGA 59.104 40.000 0.00 0.00 39.76 4.20
30 31 5.687166 AACATACCGATAGACAAAGGGAA 57.313 39.130 0.00 0.00 39.76 3.97
31 32 5.019785 ACATACCGATAGACAAAGGGAAC 57.980 43.478 0.00 0.00 39.76 3.62
32 33 4.715297 ACATACCGATAGACAAAGGGAACT 59.285 41.667 0.00 0.00 41.32 3.01
33 34 5.895534 ACATACCGATAGACAAAGGGAACTA 59.104 40.000 0.00 0.00 38.17 2.24
34 35 4.732672 ACCGATAGACAAAGGGAACTAC 57.267 45.455 0.00 0.00 38.17 2.73
35 36 4.091549 ACCGATAGACAAAGGGAACTACA 58.908 43.478 0.00 0.00 38.17 2.74
36 37 4.715297 ACCGATAGACAAAGGGAACTACAT 59.285 41.667 0.00 0.00 38.17 2.29
37 38 5.895534 ACCGATAGACAAAGGGAACTACATA 59.104 40.000 0.00 0.00 38.17 2.29
38 39 6.183360 ACCGATAGACAAAGGGAACTACATAC 60.183 42.308 0.00 0.00 38.17 2.39
39 40 5.913514 CGATAGACAAAGGGAACTACATACG 59.086 44.000 0.00 0.00 38.17 3.06
40 41 4.467198 AGACAAAGGGAACTACATACGG 57.533 45.455 0.00 0.00 42.68 4.02
41 42 3.197116 AGACAAAGGGAACTACATACGGG 59.803 47.826 0.00 0.00 42.68 5.28
42 43 3.175594 ACAAAGGGAACTACATACGGGA 58.824 45.455 0.00 0.00 42.68 5.14
43 44 3.778629 ACAAAGGGAACTACATACGGGAT 59.221 43.478 0.00 0.00 42.68 3.85
44 45 4.226620 ACAAAGGGAACTACATACGGGATT 59.773 41.667 0.00 0.00 42.68 3.01
45 46 5.426185 ACAAAGGGAACTACATACGGGATTA 59.574 40.000 0.00 0.00 42.68 1.75
46 47 5.803237 AAGGGAACTACATACGGGATTAG 57.197 43.478 0.00 0.00 42.68 1.73
47 48 3.577415 AGGGAACTACATACGGGATTAGC 59.423 47.826 0.00 0.00 40.61 3.09
48 49 3.577415 GGGAACTACATACGGGATTAGCT 59.423 47.826 0.00 0.00 0.00 3.32
49 50 4.557205 GGAACTACATACGGGATTAGCTG 58.443 47.826 0.00 0.00 0.00 4.24
50 51 4.280174 GGAACTACATACGGGATTAGCTGA 59.720 45.833 0.00 0.00 0.00 4.26
51 52 5.221382 GGAACTACATACGGGATTAGCTGAA 60.221 44.000 0.00 0.00 0.00 3.02
52 53 6.420913 AACTACATACGGGATTAGCTGAAT 57.579 37.500 0.00 0.00 0.00 2.57
53 54 6.026947 ACTACATACGGGATTAGCTGAATC 57.973 41.667 0.00 1.99 42.97 2.52
65 66 7.344910 GATTAGCTGAATCCTTAACATCGAG 57.655 40.000 0.00 0.00 38.45 4.04
66 67 4.065321 AGCTGAATCCTTAACATCGAGG 57.935 45.455 0.00 0.00 0.00 4.63
67 68 3.452627 AGCTGAATCCTTAACATCGAGGT 59.547 43.478 0.00 0.00 34.57 3.85
68 69 4.080863 AGCTGAATCCTTAACATCGAGGTT 60.081 41.667 20.23 20.23 34.57 3.50
69 70 4.271291 GCTGAATCCTTAACATCGAGGTTC 59.729 45.833 19.96 3.71 34.57 3.62
70 71 4.430007 TGAATCCTTAACATCGAGGTTCG 58.570 43.478 19.96 11.51 42.10 3.95
80 81 2.028420 TCGAGGTTCGACCGATAAGA 57.972 50.000 0.00 0.00 44.82 2.10
81 82 2.569059 TCGAGGTTCGACCGATAAGAT 58.431 47.619 0.00 0.00 44.82 2.40
82 83 2.547211 TCGAGGTTCGACCGATAAGATC 59.453 50.000 0.00 0.00 44.82 2.75
83 84 2.548904 CGAGGTTCGACCGATAAGATCT 59.451 50.000 0.00 0.00 44.90 2.75
84 85 3.003482 CGAGGTTCGACCGATAAGATCTT 59.997 47.826 13.56 13.56 44.90 2.40
85 86 4.538917 GAGGTTCGACCGATAAGATCTTC 58.461 47.826 12.24 0.00 44.90 2.87
86 87 3.003482 AGGTTCGACCGATAAGATCTTCG 59.997 47.826 12.24 10.60 44.90 3.79
87 88 3.243002 GGTTCGACCGATAAGATCTTCGT 60.243 47.826 12.24 1.75 35.34 3.85
88 89 4.024556 GGTTCGACCGATAAGATCTTCGTA 60.025 45.833 12.24 0.00 35.34 3.43
89 90 4.986875 TCGACCGATAAGATCTTCGTAG 57.013 45.455 12.24 5.17 35.34 3.51
90 91 4.625028 TCGACCGATAAGATCTTCGTAGA 58.375 43.478 12.24 7.31 35.34 2.59
91 92 5.052481 TCGACCGATAAGATCTTCGTAGAA 58.948 41.667 12.24 0.00 45.90 2.10
92 93 5.699915 TCGACCGATAAGATCTTCGTAGAAT 59.300 40.000 12.24 0.00 45.90 2.40
93 94 6.870439 TCGACCGATAAGATCTTCGTAGAATA 59.130 38.462 12.24 0.00 45.90 1.75
94 95 7.548427 TCGACCGATAAGATCTTCGTAGAATAT 59.452 37.037 12.24 0.00 45.90 1.28
95 96 7.636745 CGACCGATAAGATCTTCGTAGAATATG 59.363 40.741 12.24 0.00 45.90 1.78
96 97 8.338072 ACCGATAAGATCTTCGTAGAATATGT 57.662 34.615 12.24 0.00 45.90 2.29
97 98 8.237949 ACCGATAAGATCTTCGTAGAATATGTG 58.762 37.037 12.24 0.00 45.90 3.21
98 99 8.451748 CCGATAAGATCTTCGTAGAATATGTGA 58.548 37.037 12.24 0.00 45.90 3.58
99 100 9.484326 CGATAAGATCTTCGTAGAATATGTGAG 57.516 37.037 12.24 0.00 45.90 3.51
103 104 7.653647 AGATCTTCGTAGAATATGTGAGAACC 58.346 38.462 0.00 0.00 45.90 3.62
104 105 6.769134 TCTTCGTAGAATATGTGAGAACCA 57.231 37.500 0.00 0.00 45.90 3.67
105 106 7.165460 TCTTCGTAGAATATGTGAGAACCAA 57.835 36.000 0.00 0.00 45.90 3.67
106 107 7.782049 TCTTCGTAGAATATGTGAGAACCAAT 58.218 34.615 0.00 0.00 45.90 3.16
107 108 8.909923 TCTTCGTAGAATATGTGAGAACCAATA 58.090 33.333 0.00 0.00 45.90 1.90
108 109 9.698309 CTTCGTAGAATATGTGAGAACCAATAT 57.302 33.333 0.00 0.00 45.90 1.28
109 110 9.476202 TTCGTAGAATATGTGAGAACCAATATG 57.524 33.333 0.00 0.00 45.90 1.78
110 111 8.088365 TCGTAGAATATGTGAGAACCAATATGG 58.912 37.037 0.00 0.00 45.02 2.74
111 112 8.088365 CGTAGAATATGTGAGAACCAATATGGA 58.912 37.037 2.85 0.00 40.96 3.41
112 113 9.209175 GTAGAATATGTGAGAACCAATATGGAC 57.791 37.037 2.85 0.00 40.96 4.02
113 114 6.931281 AGAATATGTGAGAACCAATATGGACG 59.069 38.462 2.85 0.00 40.96 4.79
114 115 3.973206 TGTGAGAACCAATATGGACGT 57.027 42.857 2.85 0.00 40.96 4.34
115 116 3.857052 TGTGAGAACCAATATGGACGTC 58.143 45.455 7.13 7.13 40.96 4.34
116 117 3.195661 GTGAGAACCAATATGGACGTCC 58.804 50.000 28.17 28.17 40.96 4.79
125 126 3.458163 TGGACGTCCAGATCCCGC 61.458 66.667 33.23 4.36 42.01 6.13
126 127 3.148279 GGACGTCCAGATCCCGCT 61.148 66.667 29.75 0.00 35.64 5.52
127 128 1.826921 GGACGTCCAGATCCCGCTA 60.827 63.158 29.75 0.00 35.64 4.26
128 129 1.179814 GGACGTCCAGATCCCGCTAT 61.180 60.000 29.75 0.00 35.64 2.97
129 130 0.674534 GACGTCCAGATCCCGCTATT 59.325 55.000 3.51 0.00 0.00 1.73
130 131 0.389391 ACGTCCAGATCCCGCTATTG 59.611 55.000 0.00 0.00 0.00 1.90
131 132 0.319900 CGTCCAGATCCCGCTATTGG 60.320 60.000 0.00 0.00 0.00 3.16
132 133 0.759346 GTCCAGATCCCGCTATTGGT 59.241 55.000 0.00 0.00 0.00 3.67
133 134 1.141053 GTCCAGATCCCGCTATTGGTT 59.859 52.381 0.00 0.00 0.00 3.67
134 135 2.367567 GTCCAGATCCCGCTATTGGTTA 59.632 50.000 0.00 0.00 0.00 2.85
135 136 3.008049 GTCCAGATCCCGCTATTGGTTAT 59.992 47.826 0.00 0.00 0.00 1.89
136 137 3.650942 TCCAGATCCCGCTATTGGTTATT 59.349 43.478 0.00 0.00 0.00 1.40
137 138 3.753272 CCAGATCCCGCTATTGGTTATTG 59.247 47.826 0.00 0.00 0.00 1.90
138 139 4.504864 CCAGATCCCGCTATTGGTTATTGA 60.505 45.833 0.00 0.00 0.00 2.57
139 140 4.452455 CAGATCCCGCTATTGGTTATTGAC 59.548 45.833 0.00 0.00 0.00 3.18
157 158 3.413522 CCGTAGAGGTGTTTCGGTC 57.586 57.895 0.00 0.00 36.99 4.79
158 159 0.599558 CCGTAGAGGTGTTTCGGTCA 59.400 55.000 0.00 0.00 36.99 4.02
159 160 1.203994 CCGTAGAGGTGTTTCGGTCAT 59.796 52.381 0.00 0.00 36.99 3.06
160 161 2.259618 CGTAGAGGTGTTTCGGTCATG 58.740 52.381 0.00 0.00 0.00 3.07
161 162 2.352421 CGTAGAGGTGTTTCGGTCATGT 60.352 50.000 0.00 0.00 0.00 3.21
162 163 2.457366 AGAGGTGTTTCGGTCATGTC 57.543 50.000 0.00 0.00 0.00 3.06
163 164 1.971357 AGAGGTGTTTCGGTCATGTCT 59.029 47.619 0.00 0.00 0.00 3.41
164 165 2.069273 GAGGTGTTTCGGTCATGTCTG 58.931 52.381 0.00 0.00 0.00 3.51
165 166 0.517316 GGTGTTTCGGTCATGTCTGC 59.483 55.000 0.00 0.00 0.00 4.26
166 167 1.225855 GTGTTTCGGTCATGTCTGCA 58.774 50.000 0.00 0.00 0.00 4.41
167 168 1.806542 GTGTTTCGGTCATGTCTGCAT 59.193 47.619 0.00 0.00 35.32 3.96
168 169 3.000041 GTGTTTCGGTCATGTCTGCATA 59.000 45.455 0.00 0.00 33.30 3.14
169 170 3.062639 GTGTTTCGGTCATGTCTGCATAG 59.937 47.826 0.00 0.00 33.30 2.23
170 171 3.262420 GTTTCGGTCATGTCTGCATAGT 58.738 45.455 0.00 0.00 33.30 2.12
171 172 3.610040 TTCGGTCATGTCTGCATAGTT 57.390 42.857 0.00 0.00 33.30 2.24
172 173 3.165058 TCGGTCATGTCTGCATAGTTC 57.835 47.619 0.00 0.00 33.30 3.01
173 174 2.760650 TCGGTCATGTCTGCATAGTTCT 59.239 45.455 0.00 0.00 33.30 3.01
174 175 3.119291 CGGTCATGTCTGCATAGTTCTC 58.881 50.000 0.00 0.00 33.30 2.87
175 176 3.119291 GGTCATGTCTGCATAGTTCTCG 58.881 50.000 0.00 0.00 33.30 4.04
176 177 3.181486 GGTCATGTCTGCATAGTTCTCGA 60.181 47.826 0.00 0.00 33.30 4.04
177 178 4.424626 GTCATGTCTGCATAGTTCTCGAA 58.575 43.478 0.00 0.00 33.30 3.71
178 179 4.266502 GTCATGTCTGCATAGTTCTCGAAC 59.733 45.833 1.62 1.62 35.98 3.95
179 180 3.232213 TGTCTGCATAGTTCTCGAACC 57.768 47.619 6.20 0.00 42.06 3.62
180 181 2.094182 TGTCTGCATAGTTCTCGAACCC 60.094 50.000 6.20 0.00 42.06 4.11
181 182 1.134367 TCTGCATAGTTCTCGAACCCG 59.866 52.381 6.20 0.00 42.06 5.28
182 183 0.459585 TGCATAGTTCTCGAACCCGC 60.460 55.000 6.20 7.29 42.06 6.13
183 184 0.459585 GCATAGTTCTCGAACCCGCA 60.460 55.000 6.20 0.00 42.06 5.69
184 185 1.560923 CATAGTTCTCGAACCCGCAG 58.439 55.000 6.20 0.00 42.06 5.18
199 200 2.736144 CGCAGGGTCTACACACTTAA 57.264 50.000 0.00 0.00 31.90 1.85
200 201 2.607187 CGCAGGGTCTACACACTTAAG 58.393 52.381 0.00 0.00 31.90 1.85
201 202 2.029290 CGCAGGGTCTACACACTTAAGT 60.029 50.000 1.12 1.12 31.90 2.24
225 226 9.557061 AGTGACGATATAACTATAGTTGAGTCA 57.443 33.333 25.27 24.21 38.90 3.41
235 236 7.676683 ACTATAGTTGAGTCATTATGGTGGT 57.323 36.000 0.00 3.32 0.00 4.16
236 237 8.090788 ACTATAGTTGAGTCATTATGGTGGTT 57.909 34.615 0.00 0.00 0.00 3.67
237 238 9.209048 ACTATAGTTGAGTCATTATGGTGGTTA 57.791 33.333 0.00 0.00 0.00 2.85
238 239 9.477484 CTATAGTTGAGTCATTATGGTGGTTAC 57.523 37.037 0.00 0.00 0.00 2.50
240 241 4.497291 TGAGTCATTATGGTGGTTACCC 57.503 45.455 0.00 0.00 46.96 3.69
241 242 3.118555 TGAGTCATTATGGTGGTTACCCG 60.119 47.826 0.00 0.00 46.96 5.28
242 243 3.109151 AGTCATTATGGTGGTTACCCGA 58.891 45.455 0.00 0.00 46.96 5.14
243 244 3.714798 AGTCATTATGGTGGTTACCCGAT 59.285 43.478 0.00 0.00 46.96 4.18
244 245 3.813166 GTCATTATGGTGGTTACCCGATG 59.187 47.826 0.00 0.00 46.96 3.84
245 246 2.335316 TTATGGTGGTTACCCGATGC 57.665 50.000 0.00 0.00 46.96 3.91
246 247 1.502690 TATGGTGGTTACCCGATGCT 58.497 50.000 0.00 0.00 46.96 3.79
247 248 0.180406 ATGGTGGTTACCCGATGCTC 59.820 55.000 0.00 0.00 46.96 4.26
248 249 1.153229 GGTGGTTACCCGATGCTCC 60.153 63.158 0.00 0.00 41.36 4.70
249 250 1.153229 GTGGTTACCCGATGCTCCC 60.153 63.158 0.00 0.00 0.00 4.30
250 251 2.372074 TGGTTACCCGATGCTCCCC 61.372 63.158 0.00 0.00 0.00 4.81
251 252 2.372074 GGTTACCCGATGCTCCCCA 61.372 63.158 0.00 0.00 0.00 4.96
252 253 1.146263 GTTACCCGATGCTCCCCAG 59.854 63.158 0.00 0.00 0.00 4.45
253 254 1.002403 TTACCCGATGCTCCCCAGA 59.998 57.895 0.00 0.00 0.00 3.86
254 255 0.619255 TTACCCGATGCTCCCCAGAA 60.619 55.000 0.00 0.00 0.00 3.02
255 256 1.335132 TACCCGATGCTCCCCAGAAC 61.335 60.000 0.00 0.00 0.00 3.01
256 257 2.669133 CCCGATGCTCCCCAGAACA 61.669 63.158 0.00 0.00 0.00 3.18
257 258 1.299648 CCGATGCTCCCCAGAACAA 59.700 57.895 0.00 0.00 0.00 2.83
258 259 0.322456 CCGATGCTCCCCAGAACAAA 60.322 55.000 0.00 0.00 0.00 2.83
259 260 0.804989 CGATGCTCCCCAGAACAAAC 59.195 55.000 0.00 0.00 0.00 2.93
260 261 1.177401 GATGCTCCCCAGAACAAACC 58.823 55.000 0.00 0.00 0.00 3.27
261 262 0.482446 ATGCTCCCCAGAACAAACCA 59.518 50.000 0.00 0.00 0.00 3.67
262 263 0.260230 TGCTCCCCAGAACAAACCAA 59.740 50.000 0.00 0.00 0.00 3.67
263 264 1.342474 TGCTCCCCAGAACAAACCAAA 60.342 47.619 0.00 0.00 0.00 3.28
264 265 1.970640 GCTCCCCAGAACAAACCAAAT 59.029 47.619 0.00 0.00 0.00 2.32
265 266 3.161866 GCTCCCCAGAACAAACCAAATA 58.838 45.455 0.00 0.00 0.00 1.40
266 267 3.769300 GCTCCCCAGAACAAACCAAATAT 59.231 43.478 0.00 0.00 0.00 1.28
267 268 4.222810 GCTCCCCAGAACAAACCAAATATT 59.777 41.667 0.00 0.00 0.00 1.28
268 269 5.279960 GCTCCCCAGAACAAACCAAATATTT 60.280 40.000 0.00 0.00 0.00 1.40
269 270 6.744056 GCTCCCCAGAACAAACCAAATATTTT 60.744 38.462 0.00 0.00 0.00 1.82
270 271 7.142995 TCCCCAGAACAAACCAAATATTTTT 57.857 32.000 0.00 0.00 0.00 1.94
271 272 6.995091 TCCCCAGAACAAACCAAATATTTTTG 59.005 34.615 0.00 3.93 41.59 2.44
272 273 6.293900 CCCCAGAACAAACCAAATATTTTTGC 60.294 38.462 9.87 0.00 40.77 3.68
273 274 6.261826 CCCAGAACAAACCAAATATTTTTGCA 59.738 34.615 9.87 0.00 40.77 4.08
274 275 7.040548 CCCAGAACAAACCAAATATTTTTGCAT 60.041 33.333 9.87 2.03 40.77 3.96
275 276 7.804129 CCAGAACAAACCAAATATTTTTGCATG 59.196 33.333 9.87 7.13 40.77 4.06
276 277 8.557864 CAGAACAAACCAAATATTTTTGCATGA 58.442 29.630 9.87 0.00 40.77 3.07
277 278 8.776470 AGAACAAACCAAATATTTTTGCATGAG 58.224 29.630 9.87 0.00 40.77 2.90
278 279 8.449251 AACAAACCAAATATTTTTGCATGAGT 57.551 26.923 9.87 0.00 40.77 3.41
279 280 8.086851 ACAAACCAAATATTTTTGCATGAGTC 57.913 30.769 9.87 0.00 40.77 3.36
280 281 7.173047 ACAAACCAAATATTTTTGCATGAGTCC 59.827 33.333 9.87 0.00 40.77 3.85
281 282 5.733676 ACCAAATATTTTTGCATGAGTCCC 58.266 37.500 0.00 0.00 40.77 4.46
282 283 5.484998 ACCAAATATTTTTGCATGAGTCCCT 59.515 36.000 0.00 0.00 40.77 4.20
283 284 6.044682 CCAAATATTTTTGCATGAGTCCCTC 58.955 40.000 0.00 0.00 40.77 4.30
284 285 5.859205 AATATTTTTGCATGAGTCCCTCC 57.141 39.130 0.00 0.00 0.00 4.30
285 286 1.533625 TTTTTGCATGAGTCCCTCCG 58.466 50.000 0.00 0.00 0.00 4.63
286 287 0.400213 TTTTGCATGAGTCCCTCCGT 59.600 50.000 0.00 0.00 0.00 4.69
287 288 0.400213 TTTGCATGAGTCCCTCCGTT 59.600 50.000 0.00 0.00 0.00 4.44
288 289 0.400213 TTGCATGAGTCCCTCCGTTT 59.600 50.000 0.00 0.00 0.00 3.60
289 290 0.400213 TGCATGAGTCCCTCCGTTTT 59.600 50.000 0.00 0.00 0.00 2.43
290 291 1.626321 TGCATGAGTCCCTCCGTTTTA 59.374 47.619 0.00 0.00 0.00 1.52
291 292 2.039216 TGCATGAGTCCCTCCGTTTTAA 59.961 45.455 0.00 0.00 0.00 1.52
292 293 3.078837 GCATGAGTCCCTCCGTTTTAAA 58.921 45.455 0.00 0.00 0.00 1.52
293 294 3.504520 GCATGAGTCCCTCCGTTTTAAAA 59.495 43.478 0.00 0.00 0.00 1.52
294 295 4.379499 GCATGAGTCCCTCCGTTTTAAAAG 60.379 45.833 0.00 0.00 0.00 2.27
295 296 4.426736 TGAGTCCCTCCGTTTTAAAAGT 57.573 40.909 0.00 0.00 0.00 2.66
296 297 5.549742 TGAGTCCCTCCGTTTTAAAAGTA 57.450 39.130 0.00 0.00 0.00 2.24
297 298 5.299949 TGAGTCCCTCCGTTTTAAAAGTAC 58.700 41.667 0.00 0.00 0.00 2.73
298 299 5.163322 TGAGTCCCTCCGTTTTAAAAGTACA 60.163 40.000 0.00 0.00 0.00 2.90
299 300 5.683681 AGTCCCTCCGTTTTAAAAGTACAA 58.316 37.500 0.00 0.00 0.00 2.41
300 301 5.761726 AGTCCCTCCGTTTTAAAAGTACAAG 59.238 40.000 0.00 0.00 0.00 3.16
301 302 5.528690 GTCCCTCCGTTTTAAAAGTACAAGT 59.471 40.000 0.00 0.00 0.00 3.16
302 303 5.528320 TCCCTCCGTTTTAAAAGTACAAGTG 59.472 40.000 0.00 0.00 0.00 3.16
303 304 5.297527 CCCTCCGTTTTAAAAGTACAAGTGT 59.702 40.000 0.00 0.00 0.00 3.55
304 305 6.482973 CCCTCCGTTTTAAAAGTACAAGTGTA 59.517 38.462 0.00 0.00 0.00 2.90
305 306 7.173735 CCCTCCGTTTTAAAAGTACAAGTGTAT 59.826 37.037 0.00 0.00 32.54 2.29
306 307 8.562052 CCTCCGTTTTAAAAGTACAAGTGTATT 58.438 33.333 0.00 0.00 32.54 1.89
309 310 9.815936 CCGTTTTAAAAGTACAAGTGTATTAGG 57.184 33.333 0.00 0.00 32.54 2.69
310 311 9.321590 CGTTTTAAAAGTACAAGTGTATTAGGC 57.678 33.333 0.00 0.00 32.54 3.93
322 323 9.953565 ACAAGTGTATTAGGCTTTATACTTTCA 57.046 29.630 15.88 0.00 30.32 2.69
342 343 8.966868 ACTTTCAAACTTCTTAATCTTTGACCA 58.033 29.630 0.00 0.00 33.43 4.02
343 344 9.801873 CTTTCAAACTTCTTAATCTTTGACCAA 57.198 29.630 0.00 0.00 33.43 3.67
344 345 9.801873 TTTCAAACTTCTTAATCTTTGACCAAG 57.198 29.630 0.00 0.00 33.43 3.61
345 346 8.746052 TCAAACTTCTTAATCTTTGACCAAGA 57.254 30.769 0.00 0.00 46.01 3.02
517 518 6.861065 AATACACTTCACATTTTGAGACGT 57.139 33.333 0.00 0.00 34.94 4.34
531 532 5.769484 TTGAGACGTAGGGAGTATGAATC 57.231 43.478 0.00 0.00 0.00 2.52
535 540 6.430308 TGAGACGTAGGGAGTATGAATCATAC 59.570 42.308 22.14 22.14 44.81 2.39
547 552 6.973843 GTATGAATCATACGTGTGGGTACTA 58.026 40.000 16.48 0.00 37.54 1.82
551 556 4.659111 TCATACGTGTGGGTACTAATGG 57.341 45.455 12.66 0.00 0.00 3.16
554 559 2.474112 ACGTGTGGGTACTAATGGGAT 58.526 47.619 0.00 0.00 0.00 3.85
601 621 8.259049 TGTTATTTTTGCGCTAGTACTTATGT 57.741 30.769 9.73 0.00 0.00 2.29
602 622 8.172484 TGTTATTTTTGCGCTAGTACTTATGTG 58.828 33.333 9.73 0.02 0.00 3.21
603 623 6.978343 ATTTTTGCGCTAGTACTTATGTGA 57.022 33.333 9.73 0.00 0.00 3.58
605 625 5.773239 TTTGCGCTAGTACTTATGTGAAC 57.227 39.130 9.73 0.00 0.00 3.18
607 627 3.193903 TGCGCTAGTACTTATGTGAACCA 59.806 43.478 9.73 0.00 0.00 3.67
608 628 4.178540 GCGCTAGTACTTATGTGAACCAA 58.821 43.478 0.00 0.00 0.00 3.67
609 629 4.809426 GCGCTAGTACTTATGTGAACCAAT 59.191 41.667 0.00 0.00 0.00 3.16
610 630 5.981315 GCGCTAGTACTTATGTGAACCAATA 59.019 40.000 0.00 0.00 0.00 1.90
611 631 6.144080 GCGCTAGTACTTATGTGAACCAATAG 59.856 42.308 0.00 0.00 0.00 1.73
612 632 7.201145 CGCTAGTACTTATGTGAACCAATAGT 58.799 38.462 0.00 0.00 0.00 2.12
613 633 7.705325 CGCTAGTACTTATGTGAACCAATAGTT 59.295 37.037 0.00 0.00 43.07 2.24
614 634 8.818057 GCTAGTACTTATGTGAACCAATAGTTG 58.182 37.037 0.00 0.00 39.40 3.16
615 635 9.871238 CTAGTACTTATGTGAACCAATAGTTGT 57.129 33.333 0.00 0.00 39.40 3.32
616 636 8.547967 AGTACTTATGTGAACCAATAGTTGTG 57.452 34.615 0.00 0.00 39.40 3.33
617 637 6.817765 ACTTATGTGAACCAATAGTTGTGG 57.182 37.500 0.00 0.00 39.40 4.17
618 638 6.539173 ACTTATGTGAACCAATAGTTGTGGA 58.461 36.000 0.00 0.00 39.40 4.02
619 639 6.430000 ACTTATGTGAACCAATAGTTGTGGAC 59.570 38.462 0.00 0.00 39.40 4.02
620 640 3.135225 TGTGAACCAATAGTTGTGGACG 58.865 45.455 0.00 0.00 39.40 4.79
621 641 2.482721 GTGAACCAATAGTTGTGGACGG 59.517 50.000 0.00 0.00 39.40 4.79
622 642 2.081462 GAACCAATAGTTGTGGACGGG 58.919 52.381 0.00 0.00 39.40 5.28
623 643 1.061546 ACCAATAGTTGTGGACGGGT 58.938 50.000 0.00 0.00 39.62 5.28
624 644 2.259012 ACCAATAGTTGTGGACGGGTA 58.741 47.619 0.00 0.00 39.62 3.69
632 652 2.014010 TGTGGACGGGTAGGTTACTT 57.986 50.000 0.00 0.00 0.00 2.24
655 675 8.978472 ACTTATAGTTGTGCTTATCCTTCTACA 58.022 33.333 0.00 0.00 0.00 2.74
689 721 6.727824 TTTCCTGAAGACGAAATCAAGATC 57.272 37.500 0.00 0.00 0.00 2.75
690 722 5.667539 TCCTGAAGACGAAATCAAGATCT 57.332 39.130 0.00 0.00 0.00 2.75
747 779 3.146066 TCTGTTTCCAAGCGCAATACTT 58.854 40.909 11.47 0.00 0.00 2.24
1101 6447 5.928839 TCTTGATCAACAAACTCTAGCTGAC 59.071 40.000 3.38 0.00 38.08 3.51
1640 12335 2.865551 GTTCAACGTTGGTAAGACGGAA 59.134 45.455 27.02 8.66 44.34 4.30
1700 12395 2.594962 CGTTTTCGTGCCGCTCACT 61.595 57.895 4.79 0.00 43.46 3.41
1755 12450 1.596934 CTCACCAAGGCGCTAAGGA 59.403 57.895 17.09 3.75 0.00 3.36
1757 12452 1.412710 CTCACCAAGGCGCTAAGGATA 59.587 52.381 17.09 5.78 0.00 2.59
2010 12712 9.691362 AATCGAAATGTACTGCTTTTTATTGTT 57.309 25.926 0.00 0.00 0.00 2.83
2068 12787 9.607285 AATTATCATTTTCGTATATTTGTCCGC 57.393 29.630 0.00 0.00 0.00 5.54
2091 12810 8.276325 CCGCTTATGATTTTATAAGTCAGACAC 58.724 37.037 2.66 0.45 40.89 3.67
2107 12826 0.657840 ACACGCTCTCAAGTTTGCAC 59.342 50.000 0.00 0.00 0.00 4.57
2159 12878 6.829229 TCATTCAGAAAACATGCTCTCAAT 57.171 33.333 0.00 0.00 0.00 2.57
2160 12879 6.617879 TCATTCAGAAAACATGCTCTCAATG 58.382 36.000 9.18 9.18 0.00 2.82
2161 12880 4.430137 TCAGAAAACATGCTCTCAATGC 57.570 40.909 0.00 0.00 0.00 3.56
2162 12881 3.822167 TCAGAAAACATGCTCTCAATGCA 59.178 39.130 0.00 0.00 44.95 3.96
2170 12889 3.062122 TGCTCTCAATGCATTGTCAGA 57.938 42.857 32.67 27.16 38.84 3.27
2171 12890 3.414269 TGCTCTCAATGCATTGTCAGAA 58.586 40.909 32.67 22.69 38.84 3.02
2172 12891 4.014406 TGCTCTCAATGCATTGTCAGAAT 58.986 39.130 32.67 0.00 38.84 2.40
2173 12892 4.095932 TGCTCTCAATGCATTGTCAGAATC 59.904 41.667 32.67 22.60 38.84 2.52
2174 12893 4.335874 GCTCTCAATGCATTGTCAGAATCT 59.664 41.667 32.67 0.00 38.84 2.40
2175 12894 5.163642 GCTCTCAATGCATTGTCAGAATCTT 60.164 40.000 32.67 0.00 38.84 2.40
2176 12895 6.432607 TCTCAATGCATTGTCAGAATCTTC 57.567 37.500 32.67 0.00 38.84 2.87
2177 12896 5.941647 TCTCAATGCATTGTCAGAATCTTCA 59.058 36.000 32.67 12.78 38.84 3.02
2178 12897 6.431852 TCTCAATGCATTGTCAGAATCTTCAA 59.568 34.615 32.67 12.60 38.84 2.69
2182 12901 5.957798 TGCATTGTCAGAATCTTCAAATCC 58.042 37.500 2.68 0.00 0.00 3.01
2287 13006 7.492020 TCCAAAATGAACAAGAAAACATGAGTG 59.508 33.333 0.00 0.00 0.00 3.51
2288 13007 7.254522 CCAAAATGAACAAGAAAACATGAGTGG 60.255 37.037 0.00 0.00 0.00 4.00
2290 13009 5.913137 TGAACAAGAAAACATGAGTGGTT 57.087 34.783 0.00 0.00 36.65 3.67
2292 13011 6.696411 TGAACAAGAAAACATGAGTGGTTTT 58.304 32.000 0.00 3.19 44.98 2.43
2293 13012 7.158021 TGAACAAGAAAACATGAGTGGTTTTT 58.842 30.769 0.00 0.00 44.98 1.94
2294 13013 7.330700 TGAACAAGAAAACATGAGTGGTTTTTC 59.669 33.333 0.00 4.29 44.98 2.29
2295 13014 6.935167 ACAAGAAAACATGAGTGGTTTTTCT 58.065 32.000 11.61 11.61 44.98 2.52
2296 13015 8.062065 ACAAGAAAACATGAGTGGTTTTTCTA 57.938 30.769 15.71 0.00 44.98 2.10
2297 13016 8.695456 ACAAGAAAACATGAGTGGTTTTTCTAT 58.305 29.630 15.71 8.09 44.98 1.98
2300 13019 9.574516 AGAAAACATGAGTGGTTTTTCTATAGT 57.425 29.630 14.44 0.00 44.98 2.12
2301 13020 9.612620 GAAAACATGAGTGGTTTTTCTATAGTG 57.387 33.333 0.00 0.00 44.98 2.74
2302 13021 6.743575 ACATGAGTGGTTTTTCTATAGTGC 57.256 37.500 0.00 0.00 0.00 4.40
2303 13022 6.237901 ACATGAGTGGTTTTTCTATAGTGCA 58.762 36.000 0.00 0.00 0.00 4.57
2304 13023 6.149474 ACATGAGTGGTTTTTCTATAGTGCAC 59.851 38.462 9.40 9.40 0.00 4.57
2305 13024 4.688879 TGAGTGGTTTTTCTATAGTGCACG 59.311 41.667 12.01 0.00 0.00 5.34
2306 13025 4.000988 AGTGGTTTTTCTATAGTGCACGG 58.999 43.478 12.01 3.58 0.00 4.94
2307 13026 3.126343 GTGGTTTTTCTATAGTGCACGGG 59.874 47.826 12.01 3.22 0.00 5.28
2308 13027 3.008157 TGGTTTTTCTATAGTGCACGGGA 59.992 43.478 12.01 5.64 0.00 5.14
2309 13028 4.196971 GGTTTTTCTATAGTGCACGGGAT 58.803 43.478 12.01 9.05 0.00 3.85
2310 13029 4.035208 GGTTTTTCTATAGTGCACGGGATG 59.965 45.833 12.01 2.47 0.00 3.51
2311 13030 3.469008 TTTCTATAGTGCACGGGATGG 57.531 47.619 12.01 8.65 0.00 3.51
2312 13031 2.375014 TCTATAGTGCACGGGATGGA 57.625 50.000 12.01 10.83 0.00 3.41
2313 13032 2.239400 TCTATAGTGCACGGGATGGAG 58.761 52.381 12.01 3.62 0.00 3.86
2368 13087 2.450160 GTTGTTGCTTTGAGTTCGTGG 58.550 47.619 0.00 0.00 0.00 4.94
2447 13186 6.841119 TGGTTCAAAGTGTATCATCAATTCG 58.159 36.000 0.00 0.00 0.00 3.34
2469 13234 9.778741 ATTCGTCATATTCATTATGTACCAACT 57.221 29.630 0.00 0.00 39.06 3.16
2499 13264 3.319122 GCACTTGTTTCAGGTTGGATCTT 59.681 43.478 0.00 0.00 0.00 2.40
2508 13273 4.645535 TCAGGTTGGATCTTCTGACAAAG 58.354 43.478 0.00 0.00 32.10 2.77
2540 13305 7.874940 ACACAATGAACCATTATGATATTCCG 58.125 34.615 5.13 0.00 32.69 4.30
2541 13306 7.719193 ACACAATGAACCATTATGATATTCCGA 59.281 33.333 5.13 0.00 32.69 4.55
2542 13307 8.232513 CACAATGAACCATTATGATATTCCGAG 58.767 37.037 0.00 0.00 30.75 4.63
2543 13308 7.391554 ACAATGAACCATTATGATATTCCGAGG 59.608 37.037 0.00 0.00 32.35 4.63
2544 13309 6.680148 TGAACCATTATGATATTCCGAGGA 57.320 37.500 0.00 0.00 0.00 3.71
2545 13310 7.073457 TGAACCATTATGATATTCCGAGGAA 57.927 36.000 7.06 7.06 38.59 3.36
2546 13311 6.934645 TGAACCATTATGATATTCCGAGGAAC 59.065 38.462 6.73 0.00 36.91 3.62
2547 13312 5.805728 ACCATTATGATATTCCGAGGAACC 58.194 41.667 6.73 0.85 36.91 3.62
2548 13313 5.309543 ACCATTATGATATTCCGAGGAACCA 59.690 40.000 6.73 6.35 36.91 3.67
2549 13314 6.012508 ACCATTATGATATTCCGAGGAACCAT 60.013 38.462 6.73 12.42 36.91 3.55
2550 13315 6.886459 CCATTATGATATTCCGAGGAACCATT 59.114 38.462 6.73 0.00 36.91 3.16
2551 13316 8.046708 CCATTATGATATTCCGAGGAACCATTA 58.953 37.037 6.73 5.96 36.91 1.90
2552 13317 9.618890 CATTATGATATTCCGAGGAACCATTAT 57.381 33.333 6.73 8.30 36.91 1.28
2553 13318 9.618890 ATTATGATATTCCGAGGAACCATTATG 57.381 33.333 6.73 0.00 36.91 1.90
2554 13319 6.680148 TGATATTCCGAGGAACCATTATGA 57.320 37.500 6.73 0.00 36.91 2.15
2555 13320 7.257790 TGATATTCCGAGGAACCATTATGAT 57.742 36.000 6.73 0.00 36.91 2.45
2556 13321 8.374184 TGATATTCCGAGGAACCATTATGATA 57.626 34.615 6.73 0.00 36.91 2.15
2557 13322 8.258007 TGATATTCCGAGGAACCATTATGATAC 58.742 37.037 6.73 0.00 36.91 2.24
2558 13323 5.880164 TTCCGAGGAACCATTATGATACA 57.120 39.130 0.00 0.00 0.00 2.29
2559 13324 5.209818 TCCGAGGAACCATTATGATACAC 57.790 43.478 0.00 0.00 0.00 2.90
2560 13325 4.651962 TCCGAGGAACCATTATGATACACA 59.348 41.667 0.00 0.00 0.00 3.72
2561 13326 5.306937 TCCGAGGAACCATTATGATACACAT 59.693 40.000 0.00 0.00 42.39 3.21
2562 13327 5.997746 CCGAGGAACCATTATGATACACATT 59.002 40.000 0.00 0.00 40.07 2.71
2563 13328 6.073058 CCGAGGAACCATTATGATACACATTG 60.073 42.308 0.00 0.00 40.07 2.82
2564 13329 6.705825 CGAGGAACCATTATGATACACATTGA 59.294 38.462 0.00 0.00 40.07 2.57
2565 13330 7.095481 CGAGGAACCATTATGATACACATTGAG 60.095 40.741 0.00 0.00 40.07 3.02
2566 13331 7.577303 AGGAACCATTATGATACACATTGAGT 58.423 34.615 0.00 0.00 40.07 3.41
2567 13332 8.713971 AGGAACCATTATGATACACATTGAGTA 58.286 33.333 0.00 0.00 40.07 2.59
2588 13353 7.827236 TGAGTAGTCTTTTGAACAAGAGGAAAA 59.173 33.333 0.00 0.00 33.29 2.29
2646 13411 4.461198 TCCCACAAGGAAAGAAAGAAGAC 58.539 43.478 0.00 0.00 43.78 3.01
2653 13419 9.154847 CACAAGGAAAGAAAGAAGACAAATTTT 57.845 29.630 0.00 0.00 0.00 1.82
2777 13830 5.781210 TTGAACAACAGATAAATGCCACA 57.219 34.783 0.00 0.00 0.00 4.17
2780 13833 6.757237 TGAACAACAGATAAATGCCACAAAT 58.243 32.000 0.00 0.00 0.00 2.32
2781 13834 6.867816 TGAACAACAGATAAATGCCACAAATC 59.132 34.615 0.00 0.00 0.00 2.17
2782 13835 6.343716 ACAACAGATAAATGCCACAAATCA 57.656 33.333 0.00 0.00 0.00 2.57
2783 13836 6.392354 ACAACAGATAAATGCCACAAATCAG 58.608 36.000 0.00 0.00 0.00 2.90
2784 13837 5.587388 ACAGATAAATGCCACAAATCAGG 57.413 39.130 0.00 0.00 0.00 3.86
2789 13842 2.973082 GCCACAAATCAGGCCACC 59.027 61.111 5.01 0.00 45.18 4.61
2790 13843 1.907807 GCCACAAATCAGGCCACCA 60.908 57.895 5.01 0.00 45.18 4.17
2791 13844 1.259840 GCCACAAATCAGGCCACCAT 61.260 55.000 5.01 0.00 45.18 3.55
2792 13845 1.959508 GCCACAAATCAGGCCACCATA 60.960 52.381 5.01 0.00 45.18 2.74
2793 13846 1.750778 CCACAAATCAGGCCACCATAC 59.249 52.381 5.01 0.00 0.00 2.39
2794 13847 2.445427 CACAAATCAGGCCACCATACA 58.555 47.619 5.01 0.00 0.00 2.29
2795 13848 2.824936 CACAAATCAGGCCACCATACAA 59.175 45.455 5.01 0.00 0.00 2.41
2796 13849 3.257873 CACAAATCAGGCCACCATACAAA 59.742 43.478 5.01 0.00 0.00 2.83
2797 13850 3.900601 ACAAATCAGGCCACCATACAAAA 59.099 39.130 5.01 0.00 0.00 2.44
2798 13851 4.346418 ACAAATCAGGCCACCATACAAAAA 59.654 37.500 5.01 0.00 0.00 1.94
2818 13871 5.772825 AAAAGTAGCACAAATCTCAAGCA 57.227 34.783 0.00 0.00 0.00 3.91
2819 13872 5.772825 AAAGTAGCACAAATCTCAAGCAA 57.227 34.783 0.00 0.00 0.00 3.91
2820 13873 5.972107 AAGTAGCACAAATCTCAAGCAAT 57.028 34.783 0.00 0.00 0.00 3.56
2821 13874 5.557891 AGTAGCACAAATCTCAAGCAATC 57.442 39.130 0.00 0.00 0.00 2.67
2822 13875 5.005740 AGTAGCACAAATCTCAAGCAATCA 58.994 37.500 0.00 0.00 0.00 2.57
2823 13876 4.170292 AGCACAAATCTCAAGCAATCAC 57.830 40.909 0.00 0.00 0.00 3.06
2824 13877 3.825014 AGCACAAATCTCAAGCAATCACT 59.175 39.130 0.00 0.00 0.00 3.41
2825 13878 4.082895 AGCACAAATCTCAAGCAATCACTC 60.083 41.667 0.00 0.00 0.00 3.51
2826 13879 4.320714 GCACAAATCTCAAGCAATCACTCA 60.321 41.667 0.00 0.00 0.00 3.41
2827 13880 5.765176 CACAAATCTCAAGCAATCACTCAA 58.235 37.500 0.00 0.00 0.00 3.02
2828 13881 6.387465 CACAAATCTCAAGCAATCACTCAAT 58.613 36.000 0.00 0.00 0.00 2.57
2829 13882 6.527023 CACAAATCTCAAGCAATCACTCAATC 59.473 38.462 0.00 0.00 0.00 2.67
2830 13883 6.208007 ACAAATCTCAAGCAATCACTCAATCA 59.792 34.615 0.00 0.00 0.00 2.57
2831 13884 6.438259 AATCTCAAGCAATCACTCAATCAG 57.562 37.500 0.00 0.00 0.00 2.90
2832 13885 4.259356 TCTCAAGCAATCACTCAATCAGG 58.741 43.478 0.00 0.00 0.00 3.86
2833 13886 2.751259 TCAAGCAATCACTCAATCAGGC 59.249 45.455 0.00 0.00 0.00 4.85
2834 13887 1.760192 AGCAATCACTCAATCAGGCC 58.240 50.000 0.00 0.00 0.00 5.19
2835 13888 1.005097 AGCAATCACTCAATCAGGCCA 59.995 47.619 5.01 0.00 0.00 5.36
2836 13889 1.133790 GCAATCACTCAATCAGGCCAC 59.866 52.381 5.01 0.00 0.00 5.01
2837 13890 1.747355 CAATCACTCAATCAGGCCACC 59.253 52.381 5.01 0.00 0.00 4.61
2838 13891 0.994247 ATCACTCAATCAGGCCACCA 59.006 50.000 5.01 0.00 0.00 4.17
2839 13892 0.994247 TCACTCAATCAGGCCACCAT 59.006 50.000 5.01 0.00 0.00 3.55
2840 13893 2.195727 TCACTCAATCAGGCCACCATA 58.804 47.619 5.01 0.00 0.00 2.74
2841 13894 2.092968 TCACTCAATCAGGCCACCATAC 60.093 50.000 5.01 0.00 0.00 2.39
2842 13895 1.915489 ACTCAATCAGGCCACCATACA 59.085 47.619 5.01 0.00 0.00 2.29
2843 13896 2.308570 ACTCAATCAGGCCACCATACAA 59.691 45.455 5.01 0.00 0.00 2.41
2844 13897 3.245229 ACTCAATCAGGCCACCATACAAA 60.245 43.478 5.01 0.00 0.00 2.83
2845 13898 3.355378 TCAATCAGGCCACCATACAAAG 58.645 45.455 5.01 0.00 0.00 2.77
2846 13899 3.091545 CAATCAGGCCACCATACAAAGT 58.908 45.455 5.01 0.00 0.00 2.66
2847 13900 2.969821 TCAGGCCACCATACAAAGTT 57.030 45.000 5.01 0.00 0.00 2.66
2848 13901 3.237268 TCAGGCCACCATACAAAGTTT 57.763 42.857 5.01 0.00 0.00 2.66
2849 13902 2.890311 TCAGGCCACCATACAAAGTTTG 59.110 45.455 14.13 14.13 0.00 2.93
2865 13918 6.478673 ACAAAGTTTGTATTTTGCCAACTAGC 59.521 34.615 19.59 0.00 43.27 3.42
2866 13919 6.405278 AAGTTTGTATTTTGCCAACTAGCT 57.595 33.333 0.00 0.00 0.00 3.32
2867 13920 5.772521 AGTTTGTATTTTGCCAACTAGCTG 58.227 37.500 0.00 0.00 0.00 4.24
2868 13921 5.301805 AGTTTGTATTTTGCCAACTAGCTGT 59.698 36.000 0.00 0.00 0.00 4.40
2869 13922 5.782893 TTGTATTTTGCCAACTAGCTGTT 57.217 34.783 0.00 0.00 39.92 3.16
2870 13923 5.782893 TGTATTTTGCCAACTAGCTGTTT 57.217 34.783 0.00 0.00 36.63 2.83
2871 13924 6.155475 TGTATTTTGCCAACTAGCTGTTTT 57.845 33.333 0.00 0.00 36.63 2.43
2872 13925 6.212955 TGTATTTTGCCAACTAGCTGTTTTC 58.787 36.000 0.00 0.00 36.63 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.202182 TGTCTATCGGTATGTTACTTGCCC 60.202 45.833 0.30 0.00 0.00 5.36
1 2 4.940463 TGTCTATCGGTATGTTACTTGCC 58.060 43.478 0.00 0.00 0.00 4.52
2 3 6.018994 CCTTTGTCTATCGGTATGTTACTTGC 60.019 42.308 0.00 0.00 0.00 4.01
3 4 6.479001 CCCTTTGTCTATCGGTATGTTACTTG 59.521 42.308 0.00 0.00 0.00 3.16
5 6 5.895534 TCCCTTTGTCTATCGGTATGTTACT 59.104 40.000 0.00 0.00 0.00 2.24
6 7 6.152932 TCCCTTTGTCTATCGGTATGTTAC 57.847 41.667 0.00 0.00 0.00 2.50
7 8 6.381994 AGTTCCCTTTGTCTATCGGTATGTTA 59.618 38.462 0.00 0.00 0.00 2.41
9 10 4.715297 AGTTCCCTTTGTCTATCGGTATGT 59.285 41.667 0.00 0.00 0.00 2.29
10 11 5.277857 AGTTCCCTTTGTCTATCGGTATG 57.722 43.478 0.00 0.00 0.00 2.39
11 12 5.895534 TGTAGTTCCCTTTGTCTATCGGTAT 59.104 40.000 0.00 0.00 0.00 2.73
12 13 5.263599 TGTAGTTCCCTTTGTCTATCGGTA 58.736 41.667 0.00 0.00 0.00 4.02
13 14 4.091549 TGTAGTTCCCTTTGTCTATCGGT 58.908 43.478 0.00 0.00 0.00 4.69
14 15 4.730949 TGTAGTTCCCTTTGTCTATCGG 57.269 45.455 0.00 0.00 0.00 4.18
15 16 5.913514 CGTATGTAGTTCCCTTTGTCTATCG 59.086 44.000 0.00 0.00 0.00 2.92
16 17 6.214399 CCGTATGTAGTTCCCTTTGTCTATC 58.786 44.000 0.00 0.00 0.00 2.08
17 18 5.070047 CCCGTATGTAGTTCCCTTTGTCTAT 59.930 44.000 0.00 0.00 0.00 1.98
18 19 4.403432 CCCGTATGTAGTTCCCTTTGTCTA 59.597 45.833 0.00 0.00 0.00 2.59
19 20 3.197116 CCCGTATGTAGTTCCCTTTGTCT 59.803 47.826 0.00 0.00 0.00 3.41
20 21 3.196254 TCCCGTATGTAGTTCCCTTTGTC 59.804 47.826 0.00 0.00 0.00 3.18
21 22 3.175594 TCCCGTATGTAGTTCCCTTTGT 58.824 45.455 0.00 0.00 0.00 2.83
22 23 3.899052 TCCCGTATGTAGTTCCCTTTG 57.101 47.619 0.00 0.00 0.00 2.77
23 24 5.454329 GCTAATCCCGTATGTAGTTCCCTTT 60.454 44.000 0.00 0.00 0.00 3.11
24 25 4.040095 GCTAATCCCGTATGTAGTTCCCTT 59.960 45.833 0.00 0.00 0.00 3.95
25 26 3.577415 GCTAATCCCGTATGTAGTTCCCT 59.423 47.826 0.00 0.00 0.00 4.20
26 27 3.577415 AGCTAATCCCGTATGTAGTTCCC 59.423 47.826 0.00 0.00 0.00 3.97
27 28 4.280174 TCAGCTAATCCCGTATGTAGTTCC 59.720 45.833 0.00 0.00 0.00 3.62
28 29 5.449107 TCAGCTAATCCCGTATGTAGTTC 57.551 43.478 0.00 0.00 0.00 3.01
29 30 5.864418 TTCAGCTAATCCCGTATGTAGTT 57.136 39.130 0.00 0.00 0.00 2.24
30 31 6.026947 GATTCAGCTAATCCCGTATGTAGT 57.973 41.667 0.00 0.00 38.47 2.73
41 42 6.367422 CCTCGATGTTAAGGATTCAGCTAATC 59.633 42.308 0.00 0.00 42.90 1.75
42 43 6.183361 ACCTCGATGTTAAGGATTCAGCTAAT 60.183 38.462 0.00 0.00 36.46 1.73
43 44 5.128827 ACCTCGATGTTAAGGATTCAGCTAA 59.871 40.000 0.00 0.00 36.46 3.09
44 45 4.649674 ACCTCGATGTTAAGGATTCAGCTA 59.350 41.667 0.00 0.00 36.46 3.32
45 46 3.452627 ACCTCGATGTTAAGGATTCAGCT 59.547 43.478 0.00 0.00 36.46 4.24
46 47 3.798202 ACCTCGATGTTAAGGATTCAGC 58.202 45.455 0.00 0.00 36.46 4.26
47 48 4.504461 CGAACCTCGATGTTAAGGATTCAG 59.496 45.833 6.04 0.00 43.74 3.02
48 49 4.158949 TCGAACCTCGATGTTAAGGATTCA 59.841 41.667 6.04 0.00 44.82 2.57
49 50 4.679662 TCGAACCTCGATGTTAAGGATTC 58.320 43.478 6.04 0.18 44.82 2.52
50 51 4.730949 TCGAACCTCGATGTTAAGGATT 57.269 40.909 6.04 0.00 44.82 3.01
62 63 2.548904 AGATCTTATCGGTCGAACCTCG 59.451 50.000 0.00 0.00 42.10 4.63
63 64 4.538917 GAAGATCTTATCGGTCGAACCTC 58.461 47.826 8.25 0.00 35.66 3.85
64 65 3.003482 CGAAGATCTTATCGGTCGAACCT 59.997 47.826 8.25 0.00 41.27 3.50
65 66 3.243002 ACGAAGATCTTATCGGTCGAACC 60.243 47.826 18.44 0.00 43.11 3.62
66 67 3.950078 ACGAAGATCTTATCGGTCGAAC 58.050 45.455 18.44 0.00 43.11 3.95
67 68 5.052481 TCTACGAAGATCTTATCGGTCGAA 58.948 41.667 18.44 3.28 43.11 3.71
68 69 4.625028 TCTACGAAGATCTTATCGGTCGA 58.375 43.478 18.44 10.01 43.11 4.20
69 70 4.986875 TCTACGAAGATCTTATCGGTCG 57.013 45.455 18.44 14.35 43.11 4.79
70 71 8.452534 ACATATTCTACGAAGATCTTATCGGTC 58.547 37.037 18.44 1.31 43.11 4.79
71 72 8.237949 CACATATTCTACGAAGATCTTATCGGT 58.762 37.037 18.44 12.09 43.11 4.69
72 73 8.451748 TCACATATTCTACGAAGATCTTATCGG 58.548 37.037 18.44 7.52 43.11 4.18
73 74 9.484326 CTCACATATTCTACGAAGATCTTATCG 57.516 37.037 8.25 11.59 44.33 2.92
77 78 8.138712 GGTTCTCACATATTCTACGAAGATCTT 58.861 37.037 7.95 7.95 0.00 2.40
78 79 7.285629 TGGTTCTCACATATTCTACGAAGATCT 59.714 37.037 0.00 0.00 0.00 2.75
79 80 7.426410 TGGTTCTCACATATTCTACGAAGATC 58.574 38.462 0.00 0.00 0.00 2.75
80 81 7.348080 TGGTTCTCACATATTCTACGAAGAT 57.652 36.000 0.00 0.00 0.00 2.40
81 82 6.769134 TGGTTCTCACATATTCTACGAAGA 57.231 37.500 0.00 0.00 0.00 2.87
82 83 9.698309 ATATTGGTTCTCACATATTCTACGAAG 57.302 33.333 0.00 0.00 0.00 3.79
83 84 9.476202 CATATTGGTTCTCACATATTCTACGAA 57.524 33.333 0.00 0.00 0.00 3.85
84 85 8.088365 CCATATTGGTTCTCACATATTCTACGA 58.912 37.037 0.00 0.00 31.35 3.43
85 86 8.088365 TCCATATTGGTTCTCACATATTCTACG 58.912 37.037 0.00 0.00 39.03 3.51
86 87 9.209175 GTCCATATTGGTTCTCACATATTCTAC 57.791 37.037 0.00 0.00 39.03 2.59
87 88 8.088365 CGTCCATATTGGTTCTCACATATTCTA 58.912 37.037 0.00 0.00 39.03 2.10
88 89 6.931281 CGTCCATATTGGTTCTCACATATTCT 59.069 38.462 0.00 0.00 39.03 2.40
89 90 6.706270 ACGTCCATATTGGTTCTCACATATTC 59.294 38.462 0.00 0.00 39.03 1.75
90 91 6.591935 ACGTCCATATTGGTTCTCACATATT 58.408 36.000 0.00 0.00 39.03 1.28
91 92 6.174720 ACGTCCATATTGGTTCTCACATAT 57.825 37.500 0.00 0.00 39.03 1.78
92 93 5.452776 GGACGTCCATATTGGTTCTCACATA 60.453 44.000 29.75 0.00 39.03 2.29
93 94 4.442706 GACGTCCATATTGGTTCTCACAT 58.557 43.478 3.51 0.00 39.03 3.21
94 95 3.369052 GGACGTCCATATTGGTTCTCACA 60.369 47.826 29.75 0.00 39.03 3.58
95 96 3.195661 GGACGTCCATATTGGTTCTCAC 58.804 50.000 29.75 0.00 39.03 3.51
96 97 2.835156 TGGACGTCCATATTGGTTCTCA 59.165 45.455 33.23 5.69 42.01 3.27
97 98 3.132289 TCTGGACGTCCATATTGGTTCTC 59.868 47.826 36.21 5.19 46.46 2.87
98 99 3.104512 TCTGGACGTCCATATTGGTTCT 58.895 45.455 36.21 0.00 46.46 3.01
99 100 3.536956 TCTGGACGTCCATATTGGTTC 57.463 47.619 36.21 5.95 46.46 3.62
100 101 3.181454 GGATCTGGACGTCCATATTGGTT 60.181 47.826 36.21 19.21 46.46 3.67
101 102 2.368875 GGATCTGGACGTCCATATTGGT 59.631 50.000 36.21 21.74 46.46 3.67
102 103 2.289694 GGGATCTGGACGTCCATATTGG 60.290 54.545 36.21 24.02 46.46 3.16
103 104 2.610479 CGGGATCTGGACGTCCATATTG 60.610 54.545 36.21 24.39 46.46 1.90
104 105 1.618837 CGGGATCTGGACGTCCATATT 59.381 52.381 36.21 23.30 46.46 1.28
105 106 1.257743 CGGGATCTGGACGTCCATAT 58.742 55.000 36.21 32.63 46.46 1.78
106 107 1.461091 GCGGGATCTGGACGTCCATA 61.461 60.000 36.21 29.53 46.46 2.74
107 108 2.797278 GCGGGATCTGGACGTCCAT 61.797 63.158 36.21 23.80 46.46 3.41
108 109 2.561467 TAGCGGGATCTGGACGTCCA 62.561 60.000 34.13 34.13 45.30 4.02
109 110 1.179814 ATAGCGGGATCTGGACGTCC 61.180 60.000 28.17 28.17 0.00 4.79
110 111 0.674534 AATAGCGGGATCTGGACGTC 59.325 55.000 7.13 7.13 0.00 4.34
111 112 0.389391 CAATAGCGGGATCTGGACGT 59.611 55.000 0.00 0.00 0.00 4.34
112 113 0.319900 CCAATAGCGGGATCTGGACG 60.320 60.000 0.00 0.00 0.00 4.79
113 114 0.759346 ACCAATAGCGGGATCTGGAC 59.241 55.000 2.17 0.00 0.00 4.02
114 115 1.507140 AACCAATAGCGGGATCTGGA 58.493 50.000 2.17 0.00 0.00 3.86
115 116 3.703001 ATAACCAATAGCGGGATCTGG 57.297 47.619 0.00 0.00 0.00 3.86
116 117 4.452455 GTCAATAACCAATAGCGGGATCTG 59.548 45.833 0.00 0.00 0.00 2.90
117 118 4.642429 GTCAATAACCAATAGCGGGATCT 58.358 43.478 0.00 0.00 0.00 2.75
130 131 3.881937 ACACCTCTACGGTCAATAACC 57.118 47.619 0.00 0.00 44.93 2.85
131 132 4.325472 CGAAACACCTCTACGGTCAATAAC 59.675 45.833 0.00 0.00 44.93 1.89
132 133 4.487948 CGAAACACCTCTACGGTCAATAA 58.512 43.478 0.00 0.00 44.93 1.40
133 134 3.119388 CCGAAACACCTCTACGGTCAATA 60.119 47.826 0.00 0.00 44.93 1.90
134 135 2.353406 CCGAAACACCTCTACGGTCAAT 60.353 50.000 0.00 0.00 44.93 2.57
135 136 1.000060 CCGAAACACCTCTACGGTCAA 60.000 52.381 0.00 0.00 44.93 3.18
136 137 0.599558 CCGAAACACCTCTACGGTCA 59.400 55.000 0.00 0.00 44.93 4.02
137 138 3.413522 CCGAAACACCTCTACGGTC 57.586 57.895 0.00 0.00 44.93 4.79
140 141 2.259618 CATGACCGAAACACCTCTACG 58.740 52.381 0.00 0.00 0.00 3.51
141 142 3.056749 AGACATGACCGAAACACCTCTAC 60.057 47.826 0.00 0.00 0.00 2.59
142 143 3.056821 CAGACATGACCGAAACACCTCTA 60.057 47.826 0.00 0.00 0.00 2.43
143 144 1.971357 AGACATGACCGAAACACCTCT 59.029 47.619 0.00 0.00 0.00 3.69
144 145 2.069273 CAGACATGACCGAAACACCTC 58.931 52.381 0.00 0.00 0.00 3.85
145 146 1.878102 GCAGACATGACCGAAACACCT 60.878 52.381 0.00 0.00 0.00 4.00
146 147 0.517316 GCAGACATGACCGAAACACC 59.483 55.000 0.00 0.00 0.00 4.16
147 148 1.225855 TGCAGACATGACCGAAACAC 58.774 50.000 0.00 0.00 0.00 3.32
148 149 2.183478 ATGCAGACATGACCGAAACA 57.817 45.000 0.00 0.00 34.35 2.83
149 150 3.262420 ACTATGCAGACATGACCGAAAC 58.738 45.455 0.00 0.00 37.04 2.78
150 151 3.610040 ACTATGCAGACATGACCGAAA 57.390 42.857 0.00 0.00 37.04 3.46
151 152 3.195610 AGAACTATGCAGACATGACCGAA 59.804 43.478 0.00 0.00 37.04 4.30
152 153 2.760650 AGAACTATGCAGACATGACCGA 59.239 45.455 0.00 0.00 37.04 4.69
153 154 3.119291 GAGAACTATGCAGACATGACCG 58.881 50.000 0.00 0.00 37.04 4.79
154 155 3.119291 CGAGAACTATGCAGACATGACC 58.881 50.000 0.00 0.00 37.04 4.02
155 156 4.033990 TCGAGAACTATGCAGACATGAC 57.966 45.455 0.00 0.00 37.04 3.06
156 157 4.424626 GTTCGAGAACTATGCAGACATGA 58.575 43.478 0.00 0.00 37.04 3.07
157 158 3.553511 GGTTCGAGAACTATGCAGACATG 59.446 47.826 14.62 0.00 40.94 3.21
158 159 3.430929 GGGTTCGAGAACTATGCAGACAT 60.431 47.826 14.62 0.00 40.94 3.06
159 160 2.094182 GGGTTCGAGAACTATGCAGACA 60.094 50.000 14.62 0.00 40.94 3.41
160 161 2.541556 GGGTTCGAGAACTATGCAGAC 58.458 52.381 14.62 0.00 40.94 3.51
161 162 1.134367 CGGGTTCGAGAACTATGCAGA 59.866 52.381 14.62 0.00 40.94 4.26
162 163 1.560923 CGGGTTCGAGAACTATGCAG 58.439 55.000 14.62 0.00 40.94 4.41
163 164 0.459585 GCGGGTTCGAGAACTATGCA 60.460 55.000 14.62 0.00 40.94 3.96
164 165 0.459585 TGCGGGTTCGAGAACTATGC 60.460 55.000 14.62 14.98 40.94 3.14
165 166 1.560923 CTGCGGGTTCGAGAACTATG 58.439 55.000 14.62 6.99 40.94 2.23
166 167 0.460311 CCTGCGGGTTCGAGAACTAT 59.540 55.000 14.62 0.00 40.94 2.12
167 168 1.601419 CCCTGCGGGTTCGAGAACTA 61.601 60.000 11.58 0.84 40.94 2.24
168 169 2.657237 CCTGCGGGTTCGAGAACT 59.343 61.111 14.62 0.00 40.94 3.01
169 170 2.434359 CCCTGCGGGTTCGAGAAC 60.434 66.667 11.58 7.40 38.25 3.01
179 180 0.892755 TAAGTGTGTAGACCCTGCGG 59.107 55.000 0.00 0.00 0.00 5.69
180 181 2.029290 ACTTAAGTGTGTAGACCCTGCG 60.029 50.000 7.48 0.00 0.00 5.18
181 182 3.006537 TCACTTAAGTGTGTAGACCCTGC 59.993 47.826 29.83 0.00 45.76 4.85
182 183 4.557205 GTCACTTAAGTGTGTAGACCCTG 58.443 47.826 29.83 5.39 45.76 4.45
183 184 3.255149 CGTCACTTAAGTGTGTAGACCCT 59.745 47.826 29.83 0.00 45.76 4.34
184 185 3.254166 TCGTCACTTAAGTGTGTAGACCC 59.746 47.826 29.83 11.38 45.76 4.46
185 186 4.494350 TCGTCACTTAAGTGTGTAGACC 57.506 45.455 29.83 12.48 45.76 3.85
186 187 9.219497 GTTATATCGTCACTTAAGTGTGTAGAC 57.781 37.037 29.83 20.58 45.76 2.59
187 188 9.170734 AGTTATATCGTCACTTAAGTGTGTAGA 57.829 33.333 29.83 23.56 45.76 2.59
199 200 9.557061 TGACTCAACTATAGTTATATCGTCACT 57.443 33.333 17.62 0.00 36.32 3.41
209 210 9.209048 ACCACCATAATGACTCAACTATAGTTA 57.791 33.333 17.62 2.70 36.32 2.24
210 211 8.090788 ACCACCATAATGACTCAACTATAGTT 57.909 34.615 12.50 12.50 39.12 2.24
211 212 7.676683 ACCACCATAATGACTCAACTATAGT 57.323 36.000 0.00 0.00 0.00 2.12
212 213 9.477484 GTAACCACCATAATGACTCAACTATAG 57.523 37.037 0.00 0.00 0.00 1.31
213 214 8.426489 GGTAACCACCATAATGACTCAACTATA 58.574 37.037 0.00 0.00 45.04 1.31
214 215 7.280356 GGTAACCACCATAATGACTCAACTAT 58.720 38.462 0.00 0.00 45.04 2.12
215 216 6.646267 GGTAACCACCATAATGACTCAACTA 58.354 40.000 0.00 0.00 45.04 2.24
216 217 5.497474 GGTAACCACCATAATGACTCAACT 58.503 41.667 0.00 0.00 45.04 3.16
217 218 5.813080 GGTAACCACCATAATGACTCAAC 57.187 43.478 0.00 0.00 45.04 3.18
234 235 1.146263 CTGGGGAGCATCGGGTAAC 59.854 63.158 0.00 0.00 34.37 2.50
235 236 0.619255 TTCTGGGGAGCATCGGGTAA 60.619 55.000 0.00 0.00 34.37 2.85
236 237 1.002403 TTCTGGGGAGCATCGGGTA 59.998 57.895 0.00 0.00 34.37 3.69
237 238 2.285368 TTCTGGGGAGCATCGGGT 60.285 61.111 0.00 0.00 34.37 5.28
238 239 2.190578 GTTCTGGGGAGCATCGGG 59.809 66.667 0.00 0.00 34.37 5.14
239 240 0.322456 TTTGTTCTGGGGAGCATCGG 60.322 55.000 0.00 0.00 32.96 4.18
240 241 0.804989 GTTTGTTCTGGGGAGCATCG 59.195 55.000 0.00 0.00 32.96 3.84
241 242 1.177401 GGTTTGTTCTGGGGAGCATC 58.823 55.000 0.00 0.00 32.96 3.91
242 243 0.482446 TGGTTTGTTCTGGGGAGCAT 59.518 50.000 0.00 0.00 32.96 3.79
243 244 0.260230 TTGGTTTGTTCTGGGGAGCA 59.740 50.000 0.00 0.00 0.00 4.26
244 245 1.408969 TTTGGTTTGTTCTGGGGAGC 58.591 50.000 0.00 0.00 0.00 4.70
245 246 6.358974 AAATATTTGGTTTGTTCTGGGGAG 57.641 37.500 0.00 0.00 0.00 4.30
246 247 6.755542 AAAATATTTGGTTTGTTCTGGGGA 57.244 33.333 0.39 0.00 0.00 4.81
247 248 6.293900 GCAAAAATATTTGGTTTGTTCTGGGG 60.294 38.462 0.39 0.00 44.93 4.96
248 249 6.261826 TGCAAAAATATTTGGTTTGTTCTGGG 59.738 34.615 0.39 0.00 44.93 4.45
249 250 7.256756 TGCAAAAATATTTGGTTTGTTCTGG 57.743 32.000 0.39 0.00 44.93 3.86
250 251 8.557864 TCATGCAAAAATATTTGGTTTGTTCTG 58.442 29.630 0.39 3.41 44.93 3.02
251 252 8.674263 TCATGCAAAAATATTTGGTTTGTTCT 57.326 26.923 0.39 0.00 44.93 3.01
252 253 8.558700 ACTCATGCAAAAATATTTGGTTTGTTC 58.441 29.630 0.39 0.00 44.93 3.18
253 254 8.449251 ACTCATGCAAAAATATTTGGTTTGTT 57.551 26.923 0.39 0.00 44.93 2.83
254 255 7.173047 GGACTCATGCAAAAATATTTGGTTTGT 59.827 33.333 0.39 0.00 44.93 2.83
255 256 7.361116 GGGACTCATGCAAAAATATTTGGTTTG 60.361 37.037 0.39 4.27 44.93 2.93
256 257 6.654582 GGGACTCATGCAAAAATATTTGGTTT 59.345 34.615 0.39 0.00 44.93 3.27
257 258 6.013466 AGGGACTCATGCAAAAATATTTGGTT 60.013 34.615 0.39 0.00 44.93 3.67
258 259 5.484998 AGGGACTCATGCAAAAATATTTGGT 59.515 36.000 0.39 0.00 44.93 3.67
259 260 5.981174 AGGGACTCATGCAAAAATATTTGG 58.019 37.500 0.39 0.00 44.93 3.28
277 278 5.528690 ACTTGTACTTTTAAAACGGAGGGAC 59.471 40.000 0.00 0.00 0.00 4.46
278 279 5.528320 CACTTGTACTTTTAAAACGGAGGGA 59.472 40.000 0.00 0.00 0.00 4.20
279 280 5.297527 ACACTTGTACTTTTAAAACGGAGGG 59.702 40.000 0.00 0.00 0.00 4.30
280 281 6.367686 ACACTTGTACTTTTAAAACGGAGG 57.632 37.500 0.00 0.00 0.00 4.30
283 284 9.815936 CCTAATACACTTGTACTTTTAAAACGG 57.184 33.333 0.00 0.00 32.72 4.44
284 285 9.321590 GCCTAATACACTTGTACTTTTAAAACG 57.678 33.333 0.00 0.00 32.72 3.60
296 297 9.953565 TGAAAGTATAAAGCCTAATACACTTGT 57.046 29.630 3.60 0.00 32.14 3.16
316 317 8.966868 TGGTCAAAGATTAAGAAGTTTGAAAGT 58.033 29.630 0.00 0.00 39.84 2.66
317 318 9.801873 TTGGTCAAAGATTAAGAAGTTTGAAAG 57.198 29.630 0.00 0.00 39.84 2.62
318 319 9.801873 CTTGGTCAAAGATTAAGAAGTTTGAAA 57.198 29.630 0.00 0.00 39.84 2.69
319 320 9.184523 TCTTGGTCAAAGATTAAGAAGTTTGAA 57.815 29.630 0.00 0.00 40.09 2.69
320 321 8.746052 TCTTGGTCAAAGATTAAGAAGTTTGA 57.254 30.769 0.00 0.00 40.09 2.69
491 492 8.188139 ACGTCTCAAAATGTGAAGTGTATTTTT 58.812 29.630 0.00 0.00 35.22 1.94
495 496 6.590292 CCTACGTCTCAAAATGTGAAGTGTAT 59.410 38.462 0.00 0.00 34.52 2.29
498 499 4.152402 CCCTACGTCTCAAAATGTGAAGTG 59.848 45.833 0.00 2.99 34.52 3.16
499 500 4.039973 TCCCTACGTCTCAAAATGTGAAGT 59.960 41.667 0.00 6.33 36.74 3.01
500 501 4.566004 TCCCTACGTCTCAAAATGTGAAG 58.434 43.478 0.00 0.00 35.22 3.02
502 503 3.576982 ACTCCCTACGTCTCAAAATGTGA 59.423 43.478 0.00 0.00 34.17 3.58
503 504 3.926616 ACTCCCTACGTCTCAAAATGTG 58.073 45.455 0.00 0.00 0.00 3.21
505 506 5.902681 TCATACTCCCTACGTCTCAAAATG 58.097 41.667 0.00 0.00 0.00 2.32
513 514 5.180868 ACGTATGATTCATACTCCCTACGTC 59.819 44.000 26.34 4.93 42.99 4.34
517 518 5.243060 CCACACGTATGATTCATACTCCCTA 59.757 44.000 26.34 0.00 42.99 3.53
531 532 3.385433 TCCCATTAGTACCCACACGTATG 59.615 47.826 0.00 0.00 0.00 2.39
535 540 4.884668 ATATCCCATTAGTACCCACACG 57.115 45.455 0.00 0.00 0.00 4.49
536 541 7.340999 ACAAAAATATCCCATTAGTACCCACAC 59.659 37.037 0.00 0.00 0.00 3.82
578 583 8.481974 TCACATAAGTACTAGCGCAAAAATAA 57.518 30.769 11.47 0.00 0.00 1.40
590 595 9.647797 CACAACTATTGGTTCACATAAGTACTA 57.352 33.333 0.00 0.00 35.74 1.82
598 603 3.751175 CGTCCACAACTATTGGTTCACAT 59.249 43.478 0.00 0.00 35.74 3.21
601 621 2.551287 CCCGTCCACAACTATTGGTTCA 60.551 50.000 0.00 0.00 35.74 3.18
602 622 2.081462 CCCGTCCACAACTATTGGTTC 58.919 52.381 0.00 0.00 35.74 3.62
603 623 1.422402 ACCCGTCCACAACTATTGGTT 59.578 47.619 0.00 0.00 38.93 3.67
605 625 2.419574 CCTACCCGTCCACAACTATTGG 60.420 54.545 0.00 0.00 35.18 3.16
607 627 2.543635 ACCTACCCGTCCACAACTATT 58.456 47.619 0.00 0.00 0.00 1.73
608 628 2.242882 ACCTACCCGTCCACAACTAT 57.757 50.000 0.00 0.00 0.00 2.12
609 629 2.014010 AACCTACCCGTCCACAACTA 57.986 50.000 0.00 0.00 0.00 2.24
610 630 1.620323 GTAACCTACCCGTCCACAACT 59.380 52.381 0.00 0.00 0.00 3.16
611 631 1.620323 AGTAACCTACCCGTCCACAAC 59.380 52.381 0.00 0.00 0.00 3.32
612 632 2.014010 AGTAACCTACCCGTCCACAA 57.986 50.000 0.00 0.00 0.00 3.33
613 633 2.014010 AAGTAACCTACCCGTCCACA 57.986 50.000 0.00 0.00 0.00 4.17
614 634 4.889995 ACTATAAGTAACCTACCCGTCCAC 59.110 45.833 0.00 0.00 0.00 4.02
615 635 5.129368 ACTATAAGTAACCTACCCGTCCA 57.871 43.478 0.00 0.00 0.00 4.02
616 636 5.360999 ACAACTATAAGTAACCTACCCGTCC 59.639 44.000 0.00 0.00 0.00 4.79
617 637 6.268566 CACAACTATAAGTAACCTACCCGTC 58.731 44.000 0.00 0.00 0.00 4.79
618 638 5.394553 GCACAACTATAAGTAACCTACCCGT 60.395 44.000 0.00 0.00 0.00 5.28
619 639 5.045872 GCACAACTATAAGTAACCTACCCG 58.954 45.833 0.00 0.00 0.00 5.28
620 640 6.231258 AGCACAACTATAAGTAACCTACCC 57.769 41.667 0.00 0.00 0.00 3.69
621 641 9.473640 GATAAGCACAACTATAAGTAACCTACC 57.526 37.037 0.00 0.00 0.00 3.18
622 642 9.473640 GGATAAGCACAACTATAAGTAACCTAC 57.526 37.037 0.00 0.00 0.00 3.18
623 643 9.430399 AGGATAAGCACAACTATAAGTAACCTA 57.570 33.333 0.00 0.00 0.00 3.08
624 644 8.320338 AGGATAAGCACAACTATAAGTAACCT 57.680 34.615 0.00 0.00 0.00 3.50
667 687 6.042638 AGATCTTGATTTCGTCTTCAGGAA 57.957 37.500 0.00 0.00 32.59 3.36
668 688 5.667539 AGATCTTGATTTCGTCTTCAGGA 57.332 39.130 0.00 0.00 33.25 3.86
670 690 6.018737 CGAAGATCTTGATTTCGTCTTCAG 57.981 41.667 14.00 3.71 42.94 3.02
689 721 2.288213 TGCACACCTCTACTCAACGAAG 60.288 50.000 0.00 0.00 0.00 3.79
690 722 1.684450 TGCACACCTCTACTCAACGAA 59.316 47.619 0.00 0.00 0.00 3.85
694 726 1.324383 TCGTGCACACCTCTACTCAA 58.676 50.000 18.64 0.00 0.00 3.02
747 779 5.426509 ACAATGAGGAGGTGTATCTCAATGA 59.573 40.000 12.67 0.00 39.48 2.57
949 6248 2.335369 GCTGGCTATGCATGCTGC 59.665 61.111 20.33 18.90 45.29 5.25
951 6250 1.826921 GGTGCTGGCTATGCATGCT 60.827 57.895 20.33 7.07 42.69 3.79
952 6257 1.461091 ATGGTGCTGGCTATGCATGC 61.461 55.000 11.82 11.82 42.69 4.06
963 6277 1.227234 CATGCATGCCATGGTGCTG 60.227 57.895 23.49 16.33 46.09 4.41
1202 6827 0.828343 GAAGAGGATCGGGGTCGGAT 60.828 60.000 0.00 0.00 42.67 4.18
1252 11947 2.432628 CGTTCACCGAGACTGCCC 60.433 66.667 0.00 0.00 39.56 5.36
1640 12335 1.958288 AGGAGACAACCATGTAGGCT 58.042 50.000 0.00 0.00 40.74 4.58
1755 12450 2.521224 GACGACCCCGGCCTCTAT 60.521 66.667 0.00 0.00 38.01 1.98
1859 12557 9.423061 GCTGAACAATTATTAAATTTCACTGGT 57.577 29.630 0.00 0.00 32.87 4.00
1887 12585 6.034591 GCTAGAAGCTTGAATACGTGTCTTA 58.965 40.000 2.10 0.00 38.45 2.10
2010 12712 5.574830 CCGTTCAATGAAAAGAACAAACACA 59.425 36.000 0.00 0.00 43.20 3.72
2068 12787 9.035607 AGCGTGTCTGACTTATAAAATCATAAG 57.964 33.333 9.51 2.16 42.03 1.73
2091 12810 1.205064 CCGTGCAAACTTGAGAGCG 59.795 57.895 0.00 0.00 0.00 5.03
2107 12826 2.880879 CTCACCACGCGATCACCG 60.881 66.667 15.93 0.00 42.21 4.94
2159 12878 5.713389 AGGATTTGAAGATTCTGACAATGCA 59.287 36.000 0.00 0.00 0.00 3.96
2160 12879 6.205101 AGGATTTGAAGATTCTGACAATGC 57.795 37.500 7.17 2.84 0.00 3.56
2161 12880 7.823665 TGAAGGATTTGAAGATTCTGACAATG 58.176 34.615 7.17 0.00 0.00 2.82
2162 12881 7.886970 TCTGAAGGATTTGAAGATTCTGACAAT 59.113 33.333 7.17 0.00 0.00 2.71
2163 12882 7.226441 TCTGAAGGATTTGAAGATTCTGACAA 58.774 34.615 0.00 0.00 0.00 3.18
2164 12883 6.772605 TCTGAAGGATTTGAAGATTCTGACA 58.227 36.000 0.00 0.00 0.00 3.58
2165 12884 7.678947 TTCTGAAGGATTTGAAGATTCTGAC 57.321 36.000 0.00 0.00 30.65 3.51
2166 12885 8.571336 GTTTTCTGAAGGATTTGAAGATTCTGA 58.429 33.333 0.00 0.00 0.00 3.27
2167 12886 8.355169 TGTTTTCTGAAGGATTTGAAGATTCTG 58.645 33.333 0.00 0.00 0.00 3.02
2168 12887 8.469309 TGTTTTCTGAAGGATTTGAAGATTCT 57.531 30.769 0.00 0.00 0.00 2.40
2169 12888 9.136952 CATGTTTTCTGAAGGATTTGAAGATTC 57.863 33.333 0.00 0.00 0.00 2.52
2170 12889 7.601508 GCATGTTTTCTGAAGGATTTGAAGATT 59.398 33.333 0.00 0.00 0.00 2.40
2171 12890 7.039223 AGCATGTTTTCTGAAGGATTTGAAGAT 60.039 33.333 0.00 0.00 0.00 2.40
2172 12891 6.266103 AGCATGTTTTCTGAAGGATTTGAAGA 59.734 34.615 0.00 0.00 0.00 2.87
2173 12892 6.453092 AGCATGTTTTCTGAAGGATTTGAAG 58.547 36.000 0.00 0.00 0.00 3.02
2174 12893 6.266103 AGAGCATGTTTTCTGAAGGATTTGAA 59.734 34.615 0.00 0.00 0.00 2.69
2175 12894 5.771666 AGAGCATGTTTTCTGAAGGATTTGA 59.228 36.000 0.00 0.00 0.00 2.69
2176 12895 6.022163 AGAGCATGTTTTCTGAAGGATTTG 57.978 37.500 0.00 0.00 0.00 2.32
2177 12896 5.771666 TGAGAGCATGTTTTCTGAAGGATTT 59.228 36.000 1.87 0.00 0.00 2.17
2178 12897 5.319453 TGAGAGCATGTTTTCTGAAGGATT 58.681 37.500 1.87 0.00 0.00 3.01
2182 12901 5.686159 ACTTGAGAGCATGTTTTCTGAAG 57.314 39.130 15.80 15.80 39.55 3.02
2287 13006 3.602483 TCCCGTGCACTATAGAAAAACC 58.398 45.455 16.19 0.00 0.00 3.27
2288 13007 4.035208 CCATCCCGTGCACTATAGAAAAAC 59.965 45.833 16.19 0.00 0.00 2.43
2290 13009 3.452990 TCCATCCCGTGCACTATAGAAAA 59.547 43.478 16.19 0.00 0.00 2.29
2291 13010 3.035363 TCCATCCCGTGCACTATAGAAA 58.965 45.455 16.19 0.00 0.00 2.52
2292 13011 2.628178 CTCCATCCCGTGCACTATAGAA 59.372 50.000 16.19 0.00 0.00 2.10
2293 13012 2.239400 CTCCATCCCGTGCACTATAGA 58.761 52.381 16.19 6.37 0.00 1.98
2294 13013 1.964223 ACTCCATCCCGTGCACTATAG 59.036 52.381 16.19 0.00 0.00 1.31
2295 13014 2.082140 ACTCCATCCCGTGCACTATA 57.918 50.000 16.19 0.00 0.00 1.31
2296 13015 1.204146 AACTCCATCCCGTGCACTAT 58.796 50.000 16.19 2.76 0.00 2.12
2297 13016 0.981183 AAACTCCATCCCGTGCACTA 59.019 50.000 16.19 0.09 0.00 2.74
2298 13017 0.110486 AAAACTCCATCCCGTGCACT 59.890 50.000 16.19 0.00 0.00 4.40
2299 13018 0.958822 AAAAACTCCATCCCGTGCAC 59.041 50.000 6.82 6.82 0.00 4.57
2300 13019 1.202879 AGAAAAACTCCATCCCGTGCA 60.203 47.619 0.00 0.00 0.00 4.57
2301 13020 1.534729 AGAAAAACTCCATCCCGTGC 58.465 50.000 0.00 0.00 0.00 5.34
2302 13021 5.523916 CACTATAGAAAAACTCCATCCCGTG 59.476 44.000 6.78 0.00 0.00 4.94
2303 13022 5.671493 CACTATAGAAAAACTCCATCCCGT 58.329 41.667 6.78 0.00 0.00 5.28
2304 13023 4.511826 GCACTATAGAAAAACTCCATCCCG 59.488 45.833 6.78 0.00 0.00 5.14
2305 13024 5.297029 GTGCACTATAGAAAAACTCCATCCC 59.703 44.000 10.32 0.00 0.00 3.85
2306 13025 5.006746 CGTGCACTATAGAAAAACTCCATCC 59.993 44.000 16.19 0.00 0.00 3.51
2307 13026 5.006746 CCGTGCACTATAGAAAAACTCCATC 59.993 44.000 16.19 0.00 0.00 3.51
2308 13027 4.876107 CCGTGCACTATAGAAAAACTCCAT 59.124 41.667 16.19 0.00 0.00 3.41
2309 13028 4.250464 CCGTGCACTATAGAAAAACTCCA 58.750 43.478 16.19 0.00 0.00 3.86
2310 13029 3.621715 CCCGTGCACTATAGAAAAACTCC 59.378 47.826 16.19 0.00 0.00 3.85
2311 13030 4.501071 TCCCGTGCACTATAGAAAAACTC 58.499 43.478 16.19 0.00 0.00 3.01
2312 13031 4.546829 TCCCGTGCACTATAGAAAAACT 57.453 40.909 16.19 0.00 0.00 2.66
2313 13032 4.035208 CCATCCCGTGCACTATAGAAAAAC 59.965 45.833 16.19 0.00 0.00 2.43
2469 13234 6.272318 CAACCTGAAACAAGTGCATTTTCTA 58.728 36.000 11.80 2.36 31.68 2.10
2499 13264 6.710278 TCATTGTGTATCATCCTTTGTCAGA 58.290 36.000 0.00 0.00 0.00 3.27
2508 13273 8.394971 TCATAATGGTTCATTGTGTATCATCC 57.605 34.615 14.03 0.00 41.48 3.51
2536 13301 5.129650 TGTGTATCATAATGGTTCCTCGGAA 59.870 40.000 0.00 0.00 0.00 4.30
2537 13302 4.651962 TGTGTATCATAATGGTTCCTCGGA 59.348 41.667 0.00 0.00 0.00 4.55
2538 13303 4.956085 TGTGTATCATAATGGTTCCTCGG 58.044 43.478 0.00 0.00 0.00 4.63
2539 13304 6.705825 TCAATGTGTATCATAATGGTTCCTCG 59.294 38.462 0.00 0.00 35.48 4.63
2540 13305 7.716998 ACTCAATGTGTATCATAATGGTTCCTC 59.283 37.037 0.00 0.00 35.48 3.71
2541 13306 7.577303 ACTCAATGTGTATCATAATGGTTCCT 58.423 34.615 0.00 0.00 35.48 3.36
2542 13307 7.807977 ACTCAATGTGTATCATAATGGTTCC 57.192 36.000 0.00 0.00 35.48 3.62
2543 13308 9.547753 ACTACTCAATGTGTATCATAATGGTTC 57.452 33.333 0.00 0.00 35.48 3.62
2544 13309 9.547753 GACTACTCAATGTGTATCATAATGGTT 57.452 33.333 0.00 0.00 35.48 3.67
2545 13310 8.928448 AGACTACTCAATGTGTATCATAATGGT 58.072 33.333 0.00 0.00 35.48 3.55
2546 13311 9.770097 AAGACTACTCAATGTGTATCATAATGG 57.230 33.333 0.00 0.00 35.48 3.16
2551 13316 9.725019 TTCAAAAGACTACTCAATGTGTATCAT 57.275 29.630 0.00 0.00 38.57 2.45
2552 13317 8.988934 GTTCAAAAGACTACTCAATGTGTATCA 58.011 33.333 0.00 0.00 0.00 2.15
2553 13318 8.988934 TGTTCAAAAGACTACTCAATGTGTATC 58.011 33.333 0.00 0.00 0.00 2.24
2554 13319 8.902540 TGTTCAAAAGACTACTCAATGTGTAT 57.097 30.769 0.00 0.00 0.00 2.29
2555 13320 8.725405 TTGTTCAAAAGACTACTCAATGTGTA 57.275 30.769 0.00 0.00 0.00 2.90
2556 13321 7.552687 TCTTGTTCAAAAGACTACTCAATGTGT 59.447 33.333 0.00 0.00 31.19 3.72
2557 13322 7.919690 TCTTGTTCAAAAGACTACTCAATGTG 58.080 34.615 0.00 0.00 31.19 3.21
2558 13323 7.227512 CCTCTTGTTCAAAAGACTACTCAATGT 59.772 37.037 0.00 0.00 32.75 2.71
2559 13324 7.442364 TCCTCTTGTTCAAAAGACTACTCAATG 59.558 37.037 0.00 0.00 32.75 2.82
2560 13325 7.509546 TCCTCTTGTTCAAAAGACTACTCAAT 58.490 34.615 0.00 0.00 32.75 2.57
2561 13326 6.884832 TCCTCTTGTTCAAAAGACTACTCAA 58.115 36.000 0.00 0.00 32.75 3.02
2562 13327 6.479972 TCCTCTTGTTCAAAAGACTACTCA 57.520 37.500 0.00 0.00 32.75 3.41
2563 13328 7.787725 TTTCCTCTTGTTCAAAAGACTACTC 57.212 36.000 0.00 0.00 32.75 2.59
2564 13329 8.459635 GTTTTTCCTCTTGTTCAAAAGACTACT 58.540 33.333 0.00 0.00 32.75 2.57
2565 13330 7.701078 GGTTTTTCCTCTTGTTCAAAAGACTAC 59.299 37.037 0.00 0.00 32.75 2.73
2566 13331 7.614192 AGGTTTTTCCTCTTGTTCAAAAGACTA 59.386 33.333 0.00 0.00 44.42 2.59
2567 13332 6.437477 AGGTTTTTCCTCTTGTTCAAAAGACT 59.563 34.615 0.00 0.00 44.42 3.24
2623 13388 5.073428 GTCTTCTTTCTTTCCTTGTGGGAT 58.927 41.667 0.00 0.00 44.66 3.85
2624 13389 4.080015 TGTCTTCTTTCTTTCCTTGTGGGA 60.080 41.667 0.00 0.00 43.41 4.37
2795 13848 6.147864 TGCTTGAGATTTGTGCTACTTTTT 57.852 33.333 0.00 0.00 0.00 1.94
2796 13849 5.772825 TGCTTGAGATTTGTGCTACTTTT 57.227 34.783 0.00 0.00 0.00 2.27
2797 13850 5.772825 TTGCTTGAGATTTGTGCTACTTT 57.227 34.783 0.00 0.00 0.00 2.66
2798 13851 5.474532 TGATTGCTTGAGATTTGTGCTACTT 59.525 36.000 0.00 0.00 0.00 2.24
2799 13852 5.005740 TGATTGCTTGAGATTTGTGCTACT 58.994 37.500 0.00 0.00 0.00 2.57
2800 13853 5.091431 GTGATTGCTTGAGATTTGTGCTAC 58.909 41.667 0.00 0.00 0.00 3.58
2801 13854 5.005740 AGTGATTGCTTGAGATTTGTGCTA 58.994 37.500 0.00 0.00 0.00 3.49
2802 13855 3.825014 AGTGATTGCTTGAGATTTGTGCT 59.175 39.130 0.00 0.00 0.00 4.40
2803 13856 4.164294 GAGTGATTGCTTGAGATTTGTGC 58.836 43.478 0.00 0.00 0.00 4.57
2804 13857 5.366829 TGAGTGATTGCTTGAGATTTGTG 57.633 39.130 0.00 0.00 0.00 3.33
2805 13858 6.208007 TGATTGAGTGATTGCTTGAGATTTGT 59.792 34.615 0.00 0.00 0.00 2.83
2806 13859 6.617879 TGATTGAGTGATTGCTTGAGATTTG 58.382 36.000 0.00 0.00 0.00 2.32
2807 13860 6.127703 CCTGATTGAGTGATTGCTTGAGATTT 60.128 38.462 0.00 0.00 0.00 2.17
2808 13861 5.357314 CCTGATTGAGTGATTGCTTGAGATT 59.643 40.000 0.00 0.00 0.00 2.40
2809 13862 4.882427 CCTGATTGAGTGATTGCTTGAGAT 59.118 41.667 0.00 0.00 0.00 2.75
2810 13863 4.259356 CCTGATTGAGTGATTGCTTGAGA 58.741 43.478 0.00 0.00 0.00 3.27
2811 13864 3.181499 GCCTGATTGAGTGATTGCTTGAG 60.181 47.826 0.00 0.00 0.00 3.02
2812 13865 2.751259 GCCTGATTGAGTGATTGCTTGA 59.249 45.455 0.00 0.00 0.00 3.02
2813 13866 2.159282 GGCCTGATTGAGTGATTGCTTG 60.159 50.000 0.00 0.00 0.00 4.01
2814 13867 2.097825 GGCCTGATTGAGTGATTGCTT 58.902 47.619 0.00 0.00 0.00 3.91
2815 13868 1.005097 TGGCCTGATTGAGTGATTGCT 59.995 47.619 3.32 0.00 0.00 3.91
2816 13869 1.133790 GTGGCCTGATTGAGTGATTGC 59.866 52.381 3.32 0.00 0.00 3.56
2817 13870 1.747355 GGTGGCCTGATTGAGTGATTG 59.253 52.381 3.32 0.00 0.00 2.67
2818 13871 1.355381 TGGTGGCCTGATTGAGTGATT 59.645 47.619 3.32 0.00 0.00 2.57
2819 13872 0.994247 TGGTGGCCTGATTGAGTGAT 59.006 50.000 3.32 0.00 0.00 3.06
2820 13873 0.994247 ATGGTGGCCTGATTGAGTGA 59.006 50.000 3.32 0.00 0.00 3.41
2821 13874 2.292267 GTATGGTGGCCTGATTGAGTG 58.708 52.381 3.32 0.00 0.00 3.51
2822 13875 1.915489 TGTATGGTGGCCTGATTGAGT 59.085 47.619 3.32 0.00 0.00 3.41
2823 13876 2.715749 TGTATGGTGGCCTGATTGAG 57.284 50.000 3.32 0.00 0.00 3.02
2824 13877 3.245229 ACTTTGTATGGTGGCCTGATTGA 60.245 43.478 3.32 0.00 0.00 2.57
2825 13878 3.091545 ACTTTGTATGGTGGCCTGATTG 58.908 45.455 3.32 0.00 0.00 2.67
2826 13879 3.456380 ACTTTGTATGGTGGCCTGATT 57.544 42.857 3.32 0.00 0.00 2.57
2827 13880 3.456380 AACTTTGTATGGTGGCCTGAT 57.544 42.857 3.32 0.00 0.00 2.90
2828 13881 2.890311 CAAACTTTGTATGGTGGCCTGA 59.110 45.455 3.32 0.00 0.00 3.86
2829 13882 2.627699 ACAAACTTTGTATGGTGGCCTG 59.372 45.455 3.32 0.00 43.27 4.85
2830 13883 2.957474 ACAAACTTTGTATGGTGGCCT 58.043 42.857 3.32 0.00 43.27 5.19
2840 13893 7.632680 AGCTAGTTGGCAAAATACAAACTTTGT 60.633 33.333 11.82 11.82 40.04 2.83
2841 13894 6.701400 AGCTAGTTGGCAAAATACAAACTTTG 59.299 34.615 0.00 0.00 35.95 2.77
2842 13895 6.701400 CAGCTAGTTGGCAAAATACAAACTTT 59.299 34.615 0.00 0.00 34.17 2.66
2843 13896 6.183360 ACAGCTAGTTGGCAAAATACAAACTT 60.183 34.615 11.56 0.00 34.17 2.66
2844 13897 5.301805 ACAGCTAGTTGGCAAAATACAAACT 59.698 36.000 11.56 0.00 34.17 2.66
2845 13898 5.528870 ACAGCTAGTTGGCAAAATACAAAC 58.471 37.500 11.56 0.00 34.17 2.93
2846 13899 5.782893 ACAGCTAGTTGGCAAAATACAAA 57.217 34.783 11.56 0.00 34.17 2.83
2847 13900 5.782893 AACAGCTAGTTGGCAAAATACAA 57.217 34.783 11.56 0.00 39.49 2.41
2848 13901 5.782893 AAACAGCTAGTTGGCAAAATACA 57.217 34.783 11.56 0.00 41.19 2.29
2849 13902 6.690704 GAAAACAGCTAGTTGGCAAAATAC 57.309 37.500 11.56 0.00 41.19 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.