Multiple sequence alignment - TraesCS4B01G032900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G032900 chr4B 100.000 4043 0 0 1 4043 24571345 24567303 0.000000e+00 7467.0
1 TraesCS4B01G032900 chr4B 100.000 31 0 0 3945 3975 24567368 24567338 1.570000e-04 58.4
2 TraesCS4B01G032900 chr4B 100.000 31 0 0 3978 4008 24567401 24567371 1.570000e-04 58.4
3 TraesCS4B01G032900 chr4D 92.220 2622 127 20 728 3317 14604699 14607275 0.000000e+00 3640.0
4 TraesCS4B01G032900 chr4D 90.937 2626 149 40 826 3383 14669677 14667073 0.000000e+00 3448.0
5 TraesCS4B01G032900 chr4D 84.286 490 45 12 236 722 14604109 14604569 2.220000e-122 449.0
6 TraesCS4B01G032900 chr4D 82.386 352 41 10 3481 3816 14607355 14607701 1.840000e-73 287.0
7 TraesCS4B01G032900 chr4D 87.008 254 28 3 2054 2303 14605604 14605856 8.560000e-72 281.0
8 TraesCS4B01G032900 chr4D 80.627 351 43 12 3482 3816 14667045 14666704 8.680000e-62 248.0
9 TraesCS4B01G032900 chr3B 96.278 1854 50 12 2003 3852 452860250 452862088 0.000000e+00 3024.0
10 TraesCS4B01G032900 chr3B 91.066 1276 43 21 728 1972 452859015 452860250 0.000000e+00 1659.0
11 TraesCS4B01G032900 chr3B 88.934 488 41 6 236 722 452858411 452858886 1.250000e-164 590.0
12 TraesCS4B01G032900 chr3B 91.416 233 20 0 1 233 452858497 452858729 1.810000e-83 320.0
13 TraesCS4B01G032900 chr4A 88.251 1864 112 48 807 2612 586730904 586732718 0.000000e+00 2130.0
14 TraesCS4B01G032900 chr4A 91.824 1272 94 6 2112 3383 586733305 586734566 0.000000e+00 1764.0
15 TraesCS4B01G032900 chr4A 90.252 1272 94 11 2112 3383 574193618 574194859 0.000000e+00 1635.0
16 TraesCS4B01G032900 chr4A 90.404 1188 51 24 807 1943 456479648 456480823 0.000000e+00 1504.0
17 TraesCS4B01G032900 chr4A 86.497 1333 125 32 2082 3383 456481431 456482739 0.000000e+00 1413.0
18 TraesCS4B01G032900 chr4A 86.657 682 52 24 1941 2612 456480764 456481416 0.000000e+00 719.0
19 TraesCS4B01G032900 chr4A 81.020 353 45 14 3482 3816 456482767 456483115 1.110000e-65 261.0
20 TraesCS4B01G032900 chr1B 81.276 486 77 8 3059 3537 17528993 17529471 8.200000e-102 381.0
21 TraesCS4B01G032900 chr1B 100.000 30 0 0 1364 1393 322421574 322421603 5.650000e-04 56.5
22 TraesCS4B01G032900 chr3D 81.132 424 75 5 3059 3481 141491100 141491519 6.470000e-88 335.0
23 TraesCS4B01G032900 chr3D 81.030 427 75 5 3059 3484 351932570 351932149 6.470000e-88 335.0
24 TraesCS4B01G032900 chr3D 95.238 42 2 0 3924 3965 449538925 449538884 2.610000e-07 67.6
25 TraesCS4B01G032900 chr2D 81.030 427 74 6 3059 3484 431520891 431520471 2.330000e-87 333.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G032900 chr4B 24567303 24571345 4042 True 7467.00 7467 100.0000 1 4043 1 chr4B.!!$R1 4042
1 TraesCS4B01G032900 chr4D 14666704 14669677 2973 True 1848.00 3448 85.7820 826 3816 2 chr4D.!!$R1 2990
2 TraesCS4B01G032900 chr4D 14604109 14607701 3592 False 1164.25 3640 86.4750 236 3816 4 chr4D.!!$F1 3580
3 TraesCS4B01G032900 chr3B 452858411 452862088 3677 False 1398.25 3024 91.9235 1 3852 4 chr3B.!!$F1 3851
4 TraesCS4B01G032900 chr4A 586730904 586734566 3662 False 1947.00 2130 90.0375 807 3383 2 chr4A.!!$F3 2576
5 TraesCS4B01G032900 chr4A 574193618 574194859 1241 False 1635.00 1635 90.2520 2112 3383 1 chr4A.!!$F1 1271
6 TraesCS4B01G032900 chr4A 456479648 456483115 3467 False 974.25 1504 86.1445 807 3816 4 chr4A.!!$F2 3009

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
120 121 0.039911 AGCGGTGGAGTAGTCTTCCT 59.960 55.0 0.0 0.0 0.00 3.36 F
452 453 0.108281 GTGGAGGAGTCGGCCTAAAC 60.108 60.0 0.0 0.0 38.73 2.01 F
723 724 0.179200 GGCAAACGCAACATAGTCGG 60.179 55.0 0.0 0.0 0.00 4.79 F
1806 2005 0.608640 GTCACCTCCTGTGTTCGGAT 59.391 55.0 0.0 0.0 45.61 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1025 1186 2.197324 CGAGGAGGAGGAGGAGGG 59.803 72.222 0.00 0.00 0.00 4.30 R
2404 2644 2.290093 GCACTTCATTGGCATCTCTAGC 59.710 50.000 0.00 0.00 0.00 3.42 R
2630 4468 0.036010 ACAAAGATCGTCCAGCTGGG 60.036 55.000 32.23 17.56 35.41 4.45 R
3337 5213 0.183971 TCCAAAAGGAAACGGAGCCA 59.816 50.000 0.00 0.00 0.00 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.888579 AGGTATACAAATAGTAGATTGTGTGC 57.111 34.615 5.01 9.68 39.89 4.57
26 27 7.931948 AGGTATACAAATAGTAGATTGTGTGCC 59.068 37.037 18.65 18.65 46.30 5.01
27 28 7.931948 GGTATACAAATAGTAGATTGTGTGCCT 59.068 37.037 18.84 0.00 44.26 4.75
28 29 9.976511 GTATACAAATAGTAGATTGTGTGCCTA 57.023 33.333 12.18 0.00 39.89 3.93
32 33 9.899661 ACAAATAGTAGATTGTGTGCCTATTAA 57.100 29.630 3.92 0.00 38.29 1.40
37 38 8.943909 AGTAGATTGTGTGCCTATTAACTAAC 57.056 34.615 0.00 0.00 0.00 2.34
38 39 7.985752 AGTAGATTGTGTGCCTATTAACTAACC 59.014 37.037 0.00 0.00 0.00 2.85
39 40 6.120220 AGATTGTGTGCCTATTAACTAACCC 58.880 40.000 0.00 0.00 0.00 4.11
40 41 5.508280 TTGTGTGCCTATTAACTAACCCT 57.492 39.130 0.00 0.00 0.00 4.34
41 42 4.839121 TGTGTGCCTATTAACTAACCCTG 58.161 43.478 0.00 0.00 0.00 4.45
42 43 3.626217 GTGTGCCTATTAACTAACCCTGC 59.374 47.826 0.00 0.00 0.00 4.85
43 44 3.211865 GTGCCTATTAACTAACCCTGCC 58.788 50.000 0.00 0.00 0.00 4.85
44 45 3.118000 GTGCCTATTAACTAACCCTGCCT 60.118 47.826 0.00 0.00 0.00 4.75
45 46 3.135895 TGCCTATTAACTAACCCTGCCTC 59.864 47.826 0.00 0.00 0.00 4.70
46 47 3.802675 GCCTATTAACTAACCCTGCCTCG 60.803 52.174 0.00 0.00 0.00 4.63
47 48 3.244112 CCTATTAACTAACCCTGCCTCGG 60.244 52.174 0.00 0.00 0.00 4.63
48 49 0.251073 TTAACTAACCCTGCCTCGGC 59.749 55.000 0.00 0.00 42.35 5.54
49 50 0.616679 TAACTAACCCTGCCTCGGCT 60.617 55.000 9.65 0.00 42.51 5.52
50 51 1.900545 AACTAACCCTGCCTCGGCTC 61.901 60.000 9.65 0.00 42.51 4.70
51 52 2.284331 TAACCCTGCCTCGGCTCA 60.284 61.111 9.65 0.00 42.51 4.26
52 53 1.689233 TAACCCTGCCTCGGCTCAT 60.689 57.895 9.65 0.00 42.51 2.90
53 54 0.397957 TAACCCTGCCTCGGCTCATA 60.398 55.000 9.65 0.00 42.51 2.15
54 55 1.271840 AACCCTGCCTCGGCTCATAA 61.272 55.000 9.65 0.00 42.51 1.90
55 56 1.271840 ACCCTGCCTCGGCTCATAAA 61.272 55.000 9.65 0.00 42.51 1.40
56 57 0.533755 CCCTGCCTCGGCTCATAAAG 60.534 60.000 9.65 0.00 42.51 1.85
57 58 0.533755 CCTGCCTCGGCTCATAAAGG 60.534 60.000 9.65 2.54 42.51 3.11
58 59 0.465705 CTGCCTCGGCTCATAAAGGA 59.534 55.000 9.65 0.00 42.51 3.36
59 60 1.071385 CTGCCTCGGCTCATAAAGGAT 59.929 52.381 9.65 0.00 42.51 3.24
60 61 1.202687 TGCCTCGGCTCATAAAGGATG 60.203 52.381 9.65 0.00 42.51 3.51
61 62 1.517242 CCTCGGCTCATAAAGGATGC 58.483 55.000 0.00 0.00 35.29 3.91
62 63 1.071385 CCTCGGCTCATAAAGGATGCT 59.929 52.381 0.00 0.00 35.29 3.79
63 64 2.411904 CTCGGCTCATAAAGGATGCTC 58.588 52.381 0.00 0.00 35.29 4.26
64 65 1.143305 CGGCTCATAAAGGATGCTCG 58.857 55.000 0.00 0.00 35.29 5.03
65 66 1.269778 CGGCTCATAAAGGATGCTCGA 60.270 52.381 0.00 0.00 35.29 4.04
66 67 2.411904 GGCTCATAAAGGATGCTCGAG 58.588 52.381 8.45 8.45 35.29 4.04
67 68 2.411904 GCTCATAAAGGATGCTCGAGG 58.588 52.381 15.58 0.00 35.29 4.63
68 69 2.411904 CTCATAAAGGATGCTCGAGGC 58.588 52.381 15.58 7.24 42.22 4.70
69 70 2.036992 CTCATAAAGGATGCTCGAGGCT 59.963 50.000 15.58 0.00 42.39 4.58
70 71 3.230976 TCATAAAGGATGCTCGAGGCTA 58.769 45.455 15.58 0.00 42.39 3.93
71 72 3.256879 TCATAAAGGATGCTCGAGGCTAG 59.743 47.826 15.58 0.00 42.39 3.42
72 73 0.755686 AAAGGATGCTCGAGGCTAGG 59.244 55.000 15.58 0.00 42.39 3.02
73 74 1.118356 AAGGATGCTCGAGGCTAGGG 61.118 60.000 15.58 0.00 42.39 3.53
74 75 1.834822 GGATGCTCGAGGCTAGGGT 60.835 63.158 15.58 0.00 42.39 4.34
75 76 1.403687 GGATGCTCGAGGCTAGGGTT 61.404 60.000 15.58 0.00 42.39 4.11
76 77 0.466124 GATGCTCGAGGCTAGGGTTT 59.534 55.000 15.58 0.00 42.39 3.27
77 78 1.687123 GATGCTCGAGGCTAGGGTTTA 59.313 52.381 15.58 0.00 42.39 2.01
78 79 0.822164 TGCTCGAGGCTAGGGTTTAC 59.178 55.000 15.58 0.00 42.39 2.01
79 80 0.822164 GCTCGAGGCTAGGGTTTACA 59.178 55.000 15.58 0.00 38.06 2.41
80 81 1.413077 GCTCGAGGCTAGGGTTTACAT 59.587 52.381 15.58 0.00 38.06 2.29
81 82 2.158943 GCTCGAGGCTAGGGTTTACATT 60.159 50.000 15.58 0.00 38.06 2.71
82 83 3.069158 GCTCGAGGCTAGGGTTTACATTA 59.931 47.826 15.58 0.00 38.06 1.90
83 84 4.442472 GCTCGAGGCTAGGGTTTACATTAA 60.442 45.833 15.58 0.00 38.06 1.40
84 85 5.742255 GCTCGAGGCTAGGGTTTACATTAAT 60.742 44.000 15.58 0.00 38.06 1.40
85 86 5.850614 TCGAGGCTAGGGTTTACATTAATC 58.149 41.667 0.00 0.00 0.00 1.75
86 87 5.601313 TCGAGGCTAGGGTTTACATTAATCT 59.399 40.000 0.00 0.00 0.00 2.40
87 88 6.099269 TCGAGGCTAGGGTTTACATTAATCTT 59.901 38.462 0.00 0.00 0.00 2.40
88 89 7.288389 TCGAGGCTAGGGTTTACATTAATCTTA 59.712 37.037 0.00 0.00 0.00 2.10
89 90 7.599245 CGAGGCTAGGGTTTACATTAATCTTAG 59.401 40.741 0.00 0.00 0.00 2.18
90 91 8.562949 AGGCTAGGGTTTACATTAATCTTAGA 57.437 34.615 0.00 0.00 0.00 2.10
91 92 9.172060 AGGCTAGGGTTTACATTAATCTTAGAT 57.828 33.333 0.00 0.00 0.00 1.98
92 93 9.220767 GGCTAGGGTTTACATTAATCTTAGATG 57.779 37.037 0.00 0.00 0.00 2.90
93 94 9.220767 GCTAGGGTTTACATTAATCTTAGATGG 57.779 37.037 0.00 0.00 0.00 3.51
108 109 3.753294 AGATGGTATCTAAAGCGGTGG 57.247 47.619 0.00 0.00 38.00 4.61
109 110 3.305720 AGATGGTATCTAAAGCGGTGGA 58.694 45.455 0.00 0.00 38.00 4.02
110 111 3.322254 AGATGGTATCTAAAGCGGTGGAG 59.678 47.826 0.00 0.00 38.00 3.86
111 112 2.463752 TGGTATCTAAAGCGGTGGAGT 58.536 47.619 0.00 0.00 0.00 3.85
112 113 3.634504 TGGTATCTAAAGCGGTGGAGTA 58.365 45.455 0.00 0.00 0.00 2.59
113 114 3.635373 TGGTATCTAAAGCGGTGGAGTAG 59.365 47.826 0.00 0.00 0.00 2.57
114 115 3.635836 GGTATCTAAAGCGGTGGAGTAGT 59.364 47.826 0.00 0.00 0.00 2.73
115 116 4.261530 GGTATCTAAAGCGGTGGAGTAGTC 60.262 50.000 0.00 0.00 0.00 2.59
116 117 3.083122 TCTAAAGCGGTGGAGTAGTCT 57.917 47.619 0.00 0.00 0.00 3.24
117 118 3.428532 TCTAAAGCGGTGGAGTAGTCTT 58.571 45.455 0.00 0.00 0.00 3.01
118 119 2.745515 AAAGCGGTGGAGTAGTCTTC 57.254 50.000 0.00 0.00 0.00 2.87
119 120 0.896226 AAGCGGTGGAGTAGTCTTCC 59.104 55.000 0.00 0.15 0.00 3.46
120 121 0.039911 AGCGGTGGAGTAGTCTTCCT 59.960 55.000 0.00 0.00 0.00 3.36
121 122 0.173708 GCGGTGGAGTAGTCTTCCTG 59.826 60.000 0.00 0.11 0.00 3.86
122 123 0.818296 CGGTGGAGTAGTCTTCCTGG 59.182 60.000 0.00 0.00 0.00 4.45
123 124 1.616187 CGGTGGAGTAGTCTTCCTGGA 60.616 57.143 0.00 0.00 0.00 3.86
124 125 2.537143 GGTGGAGTAGTCTTCCTGGAA 58.463 52.381 9.14 9.14 0.00 3.53
125 126 2.498078 GGTGGAGTAGTCTTCCTGGAAG 59.502 54.545 27.01 27.01 40.65 3.46
126 127 2.093921 GTGGAGTAGTCTTCCTGGAAGC 60.094 54.545 27.88 22.19 39.29 3.86
127 128 1.483004 GGAGTAGTCTTCCTGGAAGCC 59.517 57.143 27.88 19.43 39.29 4.35
128 129 1.135333 GAGTAGTCTTCCTGGAAGCCG 59.865 57.143 27.88 9.45 39.29 5.52
129 130 1.183549 GTAGTCTTCCTGGAAGCCGA 58.816 55.000 27.88 13.43 39.29 5.54
130 131 1.135053 GTAGTCTTCCTGGAAGCCGAC 60.135 57.143 27.88 20.58 39.29 4.79
131 132 1.079057 GTCTTCCTGGAAGCCGACC 60.079 63.158 27.88 11.47 39.29 4.79
132 133 1.229209 TCTTCCTGGAAGCCGACCT 60.229 57.895 27.88 0.00 39.29 3.85
133 134 1.219393 CTTCCTGGAAGCCGACCTC 59.781 63.158 22.55 0.00 32.78 3.85
134 135 2.245438 CTTCCTGGAAGCCGACCTCC 62.245 65.000 22.55 0.00 32.78 4.30
135 136 2.685380 CCTGGAAGCCGACCTCCT 60.685 66.667 0.00 0.00 0.00 3.69
136 137 2.294078 CCTGGAAGCCGACCTCCTT 61.294 63.158 0.00 0.00 0.00 3.36
137 138 1.078848 CTGGAAGCCGACCTCCTTG 60.079 63.158 0.00 0.00 0.00 3.61
138 139 1.831652 CTGGAAGCCGACCTCCTTGT 61.832 60.000 0.00 0.00 0.00 3.16
139 140 1.375326 GGAAGCCGACCTCCTTGTT 59.625 57.895 0.00 0.00 0.00 2.83
140 141 0.250770 GGAAGCCGACCTCCTTGTTT 60.251 55.000 0.00 0.00 0.00 2.83
141 142 1.605753 GAAGCCGACCTCCTTGTTTT 58.394 50.000 0.00 0.00 0.00 2.43
142 143 1.266989 GAAGCCGACCTCCTTGTTTTG 59.733 52.381 0.00 0.00 0.00 2.44
143 144 0.182775 AGCCGACCTCCTTGTTTTGT 59.817 50.000 0.00 0.00 0.00 2.83
144 145 0.310854 GCCGACCTCCTTGTTTTGTG 59.689 55.000 0.00 0.00 0.00 3.33
145 146 0.310854 CCGACCTCCTTGTTTTGTGC 59.689 55.000 0.00 0.00 0.00 4.57
146 147 1.308998 CGACCTCCTTGTTTTGTGCT 58.691 50.000 0.00 0.00 0.00 4.40
147 148 1.676006 CGACCTCCTTGTTTTGTGCTT 59.324 47.619 0.00 0.00 0.00 3.91
148 149 2.287009 CGACCTCCTTGTTTTGTGCTTC 60.287 50.000 0.00 0.00 0.00 3.86
149 150 2.687935 GACCTCCTTGTTTTGTGCTTCA 59.312 45.455 0.00 0.00 0.00 3.02
150 151 3.096092 ACCTCCTTGTTTTGTGCTTCAA 58.904 40.909 0.00 0.00 0.00 2.69
151 152 3.131046 ACCTCCTTGTTTTGTGCTTCAAG 59.869 43.478 0.00 0.00 37.35 3.02
152 153 3.131046 CCTCCTTGTTTTGTGCTTCAAGT 59.869 43.478 0.00 0.00 37.35 3.16
153 154 4.381932 CCTCCTTGTTTTGTGCTTCAAGTT 60.382 41.667 0.00 0.00 37.35 2.66
154 155 4.743493 TCCTTGTTTTGTGCTTCAAGTTC 58.257 39.130 0.00 0.00 37.35 3.01
155 156 3.865164 CCTTGTTTTGTGCTTCAAGTTCC 59.135 43.478 0.00 0.00 37.35 3.62
156 157 3.518634 TGTTTTGTGCTTCAAGTTCCC 57.481 42.857 0.00 0.00 37.35 3.97
157 158 2.167487 TGTTTTGTGCTTCAAGTTCCCC 59.833 45.455 0.00 0.00 37.35 4.81
158 159 1.028905 TTTGTGCTTCAAGTTCCCCG 58.971 50.000 0.00 0.00 37.35 5.73
159 160 0.821711 TTGTGCTTCAAGTTCCCCGG 60.822 55.000 0.00 0.00 0.00 5.73
160 161 1.971695 GTGCTTCAAGTTCCCCGGG 60.972 63.158 15.80 15.80 0.00 5.73
161 162 3.062466 GCTTCAAGTTCCCCGGGC 61.062 66.667 17.73 0.39 0.00 6.13
162 163 2.361230 CTTCAAGTTCCCCGGGCC 60.361 66.667 17.73 4.72 0.00 5.80
163 164 2.856988 TTCAAGTTCCCCGGGCCT 60.857 61.111 17.73 7.44 0.00 5.19
164 165 2.426305 CTTCAAGTTCCCCGGGCCTT 62.426 60.000 17.73 13.75 0.00 4.35
165 166 2.361230 CAAGTTCCCCGGGCCTTC 60.361 66.667 17.73 4.94 0.00 3.46
166 167 3.658422 AAGTTCCCCGGGCCTTCC 61.658 66.667 17.73 0.00 0.00 3.46
183 184 2.525592 CCTTCCAAAGGGCCCACA 59.474 61.111 27.56 0.00 45.27 4.17
184 185 1.079073 CCTTCCAAAGGGCCCACAT 59.921 57.895 27.56 6.76 45.27 3.21
185 186 1.259840 CCTTCCAAAGGGCCCACATG 61.260 60.000 27.56 19.07 45.27 3.21
186 187 0.542702 CTTCCAAAGGGCCCACATGT 60.543 55.000 27.56 0.00 0.00 3.21
187 188 0.831288 TTCCAAAGGGCCCACATGTG 60.831 55.000 27.56 19.31 0.00 3.21
197 198 2.422303 CCACATGTGGGATCATGGC 58.578 57.895 33.56 0.00 46.39 4.40
198 199 0.396001 CCACATGTGGGATCATGGCA 60.396 55.000 33.56 0.00 46.39 4.92
199 200 0.742505 CACATGTGGGATCATGGCAC 59.257 55.000 18.51 0.00 46.39 5.01
200 201 0.749091 ACATGTGGGATCATGGCACG 60.749 55.000 0.00 0.00 46.39 5.34
201 202 1.152902 ATGTGGGATCATGGCACGG 60.153 57.895 0.00 0.00 0.00 4.94
202 203 2.516930 GTGGGATCATGGCACGGG 60.517 66.667 0.00 0.00 0.00 5.28
203 204 3.014538 TGGGATCATGGCACGGGT 61.015 61.111 0.00 0.00 0.00 5.28
204 205 2.516930 GGGATCATGGCACGGGTG 60.517 66.667 0.00 0.00 0.00 4.61
228 229 3.327404 GACCTTGGGGGCCTCGAA 61.327 66.667 0.84 0.00 39.10 3.71
229 230 3.623703 GACCTTGGGGGCCTCGAAC 62.624 68.421 0.84 0.00 39.10 3.95
230 231 4.426313 CCTTGGGGGCCTCGAACC 62.426 72.222 0.84 0.00 0.00 3.62
231 232 4.778143 CTTGGGGGCCTCGAACCG 62.778 72.222 0.84 0.00 0.00 4.44
257 258 2.358984 GCGGCGGAGGTAAAACCA 60.359 61.111 9.78 0.00 41.95 3.67
274 275 4.851639 AACCATACTCCAGCTCTGATTT 57.148 40.909 0.00 0.00 0.00 2.17
275 276 5.957771 AACCATACTCCAGCTCTGATTTA 57.042 39.130 0.00 0.00 0.00 1.40
276 277 6.506538 AACCATACTCCAGCTCTGATTTAT 57.493 37.500 0.00 0.00 0.00 1.40
277 278 5.862845 ACCATACTCCAGCTCTGATTTATG 58.137 41.667 0.00 2.58 0.00 1.90
303 304 6.716284 TGATTGGATGTGGTACAATGAGTAA 58.284 36.000 0.00 0.00 41.56 2.24
304 305 6.823182 TGATTGGATGTGGTACAATGAGTAAG 59.177 38.462 0.00 0.00 41.56 2.34
305 306 5.097742 TGGATGTGGTACAATGAGTAAGG 57.902 43.478 0.00 0.00 44.16 2.69
332 333 4.398319 GGGGGTCATAATGATTGTAGGTG 58.602 47.826 0.00 0.00 0.00 4.00
337 338 6.706270 GGGTCATAATGATTGTAGGTGTACAG 59.294 42.308 0.00 0.00 40.33 2.74
444 445 3.887621 TCTAAATTGGTGGAGGAGTCG 57.112 47.619 0.00 0.00 0.00 4.18
445 446 2.500098 TCTAAATTGGTGGAGGAGTCGG 59.500 50.000 0.00 0.00 0.00 4.79
449 450 2.043248 GGTGGAGGAGTCGGCCTA 60.043 66.667 0.00 0.00 38.73 3.93
450 451 1.684734 GGTGGAGGAGTCGGCCTAA 60.685 63.158 0.00 0.00 38.73 2.69
452 453 0.108281 GTGGAGGAGTCGGCCTAAAC 60.108 60.000 0.00 0.00 38.73 2.01
453 454 0.543410 TGGAGGAGTCGGCCTAAACA 60.543 55.000 0.00 0.00 38.73 2.83
477 478 1.064017 ACCTCCTTGTTTTGTGCTCCA 60.064 47.619 0.00 0.00 0.00 3.86
478 479 2.031120 CCTCCTTGTTTTGTGCTCCAA 58.969 47.619 0.00 0.00 0.00 3.53
479 480 2.035066 CCTCCTTGTTTTGTGCTCCAAG 59.965 50.000 0.00 0.00 33.75 3.61
487 488 2.727123 TTGTGCTCCAAGAAGTTCCA 57.273 45.000 0.00 0.00 0.00 3.53
514 515 4.101448 CCTTCCAGAGGGCCCACG 62.101 72.222 27.56 14.07 42.26 4.94
531 532 2.556189 CCACGTGTGGGATCATGAAAAA 59.444 45.455 15.65 0.00 46.81 1.94
559 560 3.787001 GACCTTGGGGGCCTCGAG 61.787 72.222 14.35 14.35 39.10 4.04
624 625 2.447047 ACCCATCACCTTCAAGACCTTT 59.553 45.455 0.00 0.00 0.00 3.11
654 655 0.834612 CTCCCGGCTAACCCATTGTA 59.165 55.000 0.00 0.00 0.00 2.41
663 664 2.203209 CCCATTGTAGGCGAGCCC 60.203 66.667 10.95 0.00 36.58 5.19
677 678 1.608283 CGAGCCCGGATAATTTCCTCC 60.608 57.143 0.73 0.00 42.99 4.30
678 679 0.771755 AGCCCGGATAATTTCCTCCC 59.228 55.000 0.73 0.00 42.99 4.30
679 680 0.605589 GCCCGGATAATTTCCTCCCG 60.606 60.000 0.73 0.00 42.99 5.14
680 681 0.763035 CCCGGATAATTTCCTCCCGT 59.237 55.000 0.73 0.00 42.99 5.28
682 683 1.270678 CCGGATAATTTCCTCCCGTCC 60.271 57.143 0.00 0.00 42.99 4.79
686 687 2.257391 TAATTTCCTCCCGTCCTCCA 57.743 50.000 0.00 0.00 0.00 3.86
688 689 0.252742 ATTTCCTCCCGTCCTCCACT 60.253 55.000 0.00 0.00 0.00 4.00
689 690 0.410663 TTTCCTCCCGTCCTCCACTA 59.589 55.000 0.00 0.00 0.00 2.74
722 723 0.518355 CGGCAAACGCAACATAGTCG 60.518 55.000 0.00 0.00 34.82 4.18
723 724 0.179200 GGCAAACGCAACATAGTCGG 60.179 55.000 0.00 0.00 0.00 4.79
724 725 0.793861 GCAAACGCAACATAGTCGGA 59.206 50.000 0.00 0.00 0.00 4.55
725 726 1.396996 GCAAACGCAACATAGTCGGAT 59.603 47.619 0.00 0.00 0.00 4.18
730 855 1.593006 CGCAACATAGTCGGATCCAAC 59.407 52.381 13.41 2.88 0.00 3.77
735 860 4.553330 ACATAGTCGGATCCAACAAAGT 57.447 40.909 13.41 0.25 0.00 2.66
794 919 7.014134 TCCAAAGCATCTTTACACAGATTTGAA 59.986 33.333 0.00 0.00 30.50 2.69
800 925 5.376625 TCTTTACACAGATTTGAAGCACCT 58.623 37.500 0.00 0.00 0.00 4.00
830 956 2.750948 CAGAAACGGTATATCCACCCG 58.249 52.381 0.00 0.00 46.93 5.28
886 1017 1.981256 TTTCACAGCTTGGAGAACCC 58.019 50.000 0.00 0.00 34.81 4.11
1111 1287 1.002502 CCGGGGAAGAACAAGACCC 60.003 63.158 0.00 0.00 41.41 4.46
1590 1768 3.150767 CCCACGGGTTACTGAATTTTGA 58.849 45.455 0.00 0.00 0.00 2.69
1683 1879 3.555956 CGATTCATCTTAGTTTCGTGGGG 59.444 47.826 0.00 0.00 0.00 4.96
1806 2005 0.608640 GTCACCTCCTGTGTTCGGAT 59.391 55.000 0.00 0.00 45.61 4.18
1907 2112 4.082136 GGAGTGGTAGTTGGTTCTGAGTAG 60.082 50.000 0.00 0.00 0.00 2.57
1999 2206 5.118990 TGAGGTACTGCTTAATGCTGATTC 58.881 41.667 9.55 0.00 41.55 2.52
2062 2300 6.757237 AGCACATGTGTTTGGATAAATTGAA 58.243 32.000 26.01 0.00 0.00 2.69
2063 2301 6.869913 AGCACATGTGTTTGGATAAATTGAAG 59.130 34.615 26.01 0.00 0.00 3.02
2150 2390 4.819630 CAGTGGTAGTTGGCTTTGACTAAA 59.180 41.667 0.00 0.00 30.75 1.85
2340 2580 6.296365 TCCTATAACGAGAGACATGTTACG 57.704 41.667 0.00 6.59 31.50 3.18
2630 4468 4.351192 GGATACATGGCATTGAAACGTTC 58.649 43.478 0.00 0.00 0.00 3.95
2634 4472 0.958091 TGGCATTGAAACGTTCCCAG 59.042 50.000 0.00 0.00 0.00 4.45
2637 4475 1.666888 GCATTGAAACGTTCCCAGCTG 60.667 52.381 6.78 6.78 0.00 4.24
2730 4571 5.313280 TCTTTACTTACCCTCTGGCAAAA 57.687 39.130 0.00 0.00 33.59 2.44
2736 4578 6.340962 ACTTACCCTCTGGCAAAATTAAAC 57.659 37.500 0.00 0.00 33.59 2.01
2847 4716 3.988379 TCCTGAATTTGACTTGTGTGC 57.012 42.857 0.00 0.00 0.00 4.57
3222 5095 2.521708 GGGGGTATGCATGTGGCC 60.522 66.667 10.16 0.00 43.89 5.36
3240 5113 3.285484 GGCCATGGATCTATTGCTATGG 58.715 50.000 18.40 2.84 38.42 2.74
3404 5280 3.079578 ACTGACAAACATGGATCTGCAG 58.920 45.455 7.63 7.63 0.00 4.41
3411 5287 3.540314 ACATGGATCTGCAGACTTCTC 57.460 47.619 20.97 12.67 0.00 2.87
3419 5295 4.937201 TCTGCAGACTTCTCTGTTTACA 57.063 40.909 13.74 0.00 45.30 2.41
3420 5296 5.276461 TCTGCAGACTTCTCTGTTTACAA 57.724 39.130 13.74 0.00 45.30 2.41
3427 5303 7.517575 GCAGACTTCTCTGTTTACAAACTCTTC 60.518 40.741 6.41 0.00 45.30 2.87
3816 5715 6.648725 GCTTTTTACACCCTCATTTTAATGCA 59.351 34.615 0.00 0.00 36.36 3.96
3833 5732 4.942761 ATGCAAAGTGTGTCCTGATTTT 57.057 36.364 0.00 0.00 0.00 1.82
3855 5754 2.239681 TTTTCCTGTTGGTGGTTGGT 57.760 45.000 0.00 0.00 34.23 3.67
3856 5755 2.239681 TTTCCTGTTGGTGGTTGGTT 57.760 45.000 0.00 0.00 34.23 3.67
3857 5756 2.239681 TTCCTGTTGGTGGTTGGTTT 57.760 45.000 0.00 0.00 34.23 3.27
3858 5757 2.239681 TCCTGTTGGTGGTTGGTTTT 57.760 45.000 0.00 0.00 34.23 2.43
3859 5758 2.541466 TCCTGTTGGTGGTTGGTTTTT 58.459 42.857 0.00 0.00 34.23 1.94
3881 5780 3.131326 CACCCTCGTGTTAATGCGA 57.869 52.632 0.00 4.67 35.10 5.10
3882 5781 1.434555 CACCCTCGTGTTAATGCGAA 58.565 50.000 5.96 0.00 36.65 4.70
3883 5782 1.393539 CACCCTCGTGTTAATGCGAAG 59.606 52.381 5.96 1.09 36.65 3.79
3884 5783 1.001633 ACCCTCGTGTTAATGCGAAGT 59.998 47.619 5.96 4.38 36.65 3.01
3885 5784 1.393539 CCCTCGTGTTAATGCGAAGTG 59.606 52.381 5.96 0.00 36.65 3.16
3886 5785 2.066262 CCTCGTGTTAATGCGAAGTGT 58.934 47.619 5.96 0.00 36.65 3.55
3887 5786 3.247442 CCTCGTGTTAATGCGAAGTGTA 58.753 45.455 5.96 0.00 36.65 2.90
3888 5787 3.863424 CCTCGTGTTAATGCGAAGTGTAT 59.137 43.478 5.96 0.00 36.65 2.29
3889 5788 4.026804 CCTCGTGTTAATGCGAAGTGTATC 60.027 45.833 5.96 0.00 36.65 2.24
3890 5789 3.861113 TCGTGTTAATGCGAAGTGTATCC 59.139 43.478 2.53 0.00 33.96 2.59
3891 5790 3.863424 CGTGTTAATGCGAAGTGTATCCT 59.137 43.478 0.00 0.00 0.00 3.24
3892 5791 4.259810 CGTGTTAATGCGAAGTGTATCCTG 60.260 45.833 0.00 0.00 0.00 3.86
3893 5792 3.621268 TGTTAATGCGAAGTGTATCCTGC 59.379 43.478 0.00 0.00 0.00 4.85
3894 5793 2.698855 AATGCGAAGTGTATCCTGCT 57.301 45.000 0.00 0.00 0.00 4.24
3895 5794 3.819564 AATGCGAAGTGTATCCTGCTA 57.180 42.857 0.00 0.00 0.00 3.49
3896 5795 3.819564 ATGCGAAGTGTATCCTGCTAA 57.180 42.857 0.00 0.00 0.00 3.09
3897 5796 3.819564 TGCGAAGTGTATCCTGCTAAT 57.180 42.857 0.00 0.00 0.00 1.73
3898 5797 4.929819 TGCGAAGTGTATCCTGCTAATA 57.070 40.909 0.00 0.00 0.00 0.98
3899 5798 5.270893 TGCGAAGTGTATCCTGCTAATAA 57.729 39.130 0.00 0.00 0.00 1.40
3900 5799 5.853936 TGCGAAGTGTATCCTGCTAATAAT 58.146 37.500 0.00 0.00 0.00 1.28
3901 5800 6.288294 TGCGAAGTGTATCCTGCTAATAATT 58.712 36.000 0.00 0.00 0.00 1.40
3902 5801 6.765989 TGCGAAGTGTATCCTGCTAATAATTT 59.234 34.615 0.00 0.00 0.00 1.82
3903 5802 7.282224 TGCGAAGTGTATCCTGCTAATAATTTT 59.718 33.333 0.00 0.00 0.00 1.82
3904 5803 8.129211 GCGAAGTGTATCCTGCTAATAATTTTT 58.871 33.333 0.00 0.00 0.00 1.94
3926 5825 7.647907 TTTTCGGAGAAACATAGTTACACTC 57.352 36.000 0.00 0.00 45.90 3.51
3927 5826 5.970317 TCGGAGAAACATAGTTACACTCA 57.030 39.130 0.00 0.00 0.00 3.41
3928 5827 5.706916 TCGGAGAAACATAGTTACACTCAC 58.293 41.667 0.00 0.00 0.00 3.51
3929 5828 4.863131 CGGAGAAACATAGTTACACTCACC 59.137 45.833 0.00 0.00 0.00 4.02
3930 5829 4.863131 GGAGAAACATAGTTACACTCACCG 59.137 45.833 0.00 0.00 0.00 4.94
3931 5830 4.243270 AGAAACATAGTTACACTCACCGC 58.757 43.478 0.00 0.00 0.00 5.68
3932 5831 3.955650 AACATAGTTACACTCACCGCT 57.044 42.857 0.00 0.00 0.00 5.52
3933 5832 5.184479 AGAAACATAGTTACACTCACCGCTA 59.816 40.000 0.00 0.00 0.00 4.26
3934 5833 5.593679 AACATAGTTACACTCACCGCTAT 57.406 39.130 0.00 0.00 0.00 2.97
3935 5834 4.933330 ACATAGTTACACTCACCGCTATG 58.067 43.478 0.00 0.00 40.64 2.23
3936 5835 4.643334 ACATAGTTACACTCACCGCTATGA 59.357 41.667 13.98 0.00 38.49 2.15
3937 5836 5.126545 ACATAGTTACACTCACCGCTATGAA 59.873 40.000 13.98 0.00 38.49 2.57
3938 5837 3.846360 AGTTACACTCACCGCTATGAAC 58.154 45.455 0.00 0.00 0.00 3.18
3939 5838 2.554806 TACACTCACCGCTATGAACG 57.445 50.000 0.00 0.00 0.00 3.95
3940 5839 0.736325 ACACTCACCGCTATGAACGC 60.736 55.000 0.00 0.00 0.00 4.84
3941 5840 0.735978 CACTCACCGCTATGAACGCA 60.736 55.000 0.00 0.00 0.00 5.24
3942 5841 0.736325 ACTCACCGCTATGAACGCAC 60.736 55.000 0.00 0.00 0.00 5.34
3943 5842 1.742900 CTCACCGCTATGAACGCACG 61.743 60.000 0.00 0.00 0.00 5.34
3944 5843 3.186047 ACCGCTATGAACGCACGC 61.186 61.111 0.00 0.00 0.00 5.34
3945 5844 3.185365 CCGCTATGAACGCACGCA 61.185 61.111 0.00 0.00 0.00 5.24
3946 5845 2.020016 CGCTATGAACGCACGCAC 59.980 61.111 0.00 0.00 0.00 5.34
3947 5846 2.725699 CGCTATGAACGCACGCACA 61.726 57.895 0.00 0.00 0.00 4.57
3948 5847 1.225745 GCTATGAACGCACGCACAC 60.226 57.895 0.00 0.00 0.00 3.82
3949 5848 1.896339 GCTATGAACGCACGCACACA 61.896 55.000 0.00 0.00 0.00 3.72
3950 5849 0.179250 CTATGAACGCACGCACACAC 60.179 55.000 0.00 0.00 0.00 3.82
3951 5850 1.561717 TATGAACGCACGCACACACC 61.562 55.000 0.00 0.00 0.00 4.16
3952 5851 4.307908 GAACGCACGCACACACCC 62.308 66.667 0.00 0.00 0.00 4.61
3953 5852 4.849310 AACGCACGCACACACCCT 62.849 61.111 0.00 0.00 0.00 4.34
3954 5853 3.448533 AACGCACGCACACACCCTA 62.449 57.895 0.00 0.00 0.00 3.53
3955 5854 2.434185 CGCACGCACACACCCTAT 60.434 61.111 0.00 0.00 0.00 2.57
3956 5855 2.452813 CGCACGCACACACCCTATC 61.453 63.158 0.00 0.00 0.00 2.08
3957 5856 2.106683 GCACGCACACACCCTATCC 61.107 63.158 0.00 0.00 0.00 2.59
3958 5857 1.449601 CACGCACACACCCTATCCC 60.450 63.158 0.00 0.00 0.00 3.85
3959 5858 1.612442 ACGCACACACCCTATCCCT 60.612 57.895 0.00 0.00 0.00 4.20
3960 5859 0.324923 ACGCACACACCCTATCCCTA 60.325 55.000 0.00 0.00 0.00 3.53
3961 5860 1.048601 CGCACACACCCTATCCCTAT 58.951 55.000 0.00 0.00 0.00 2.57
3962 5861 1.270305 CGCACACACCCTATCCCTATG 60.270 57.143 0.00 0.00 0.00 2.23
3963 5862 2.047061 GCACACACCCTATCCCTATGA 58.953 52.381 0.00 0.00 0.00 2.15
3964 5863 2.037772 GCACACACCCTATCCCTATGAG 59.962 54.545 0.00 0.00 0.00 2.90
3965 5864 3.576861 CACACACCCTATCCCTATGAGA 58.423 50.000 0.00 0.00 0.00 3.27
3966 5865 3.576118 CACACACCCTATCCCTATGAGAG 59.424 52.174 0.00 0.00 31.87 3.20
3967 5866 2.564947 CACACCCTATCCCTATGAGAGC 59.435 54.545 0.00 0.00 30.65 4.09
3968 5867 2.180086 ACACCCTATCCCTATGAGAGCA 59.820 50.000 0.00 0.00 30.65 4.26
3969 5868 3.181402 ACACCCTATCCCTATGAGAGCAT 60.181 47.826 0.00 0.00 38.54 3.79
3970 5869 3.450457 CACCCTATCCCTATGAGAGCATC 59.550 52.174 0.00 0.00 35.94 3.91
3981 5880 3.479370 GAGCATCTCCGCACACAC 58.521 61.111 0.00 0.00 0.00 3.82
3982 5881 1.374631 GAGCATCTCCGCACACACA 60.375 57.895 0.00 0.00 0.00 3.72
3983 5882 1.630244 GAGCATCTCCGCACACACAC 61.630 60.000 0.00 0.00 0.00 3.82
3984 5883 2.680913 GCATCTCCGCACACACACC 61.681 63.158 0.00 0.00 0.00 4.16
3985 5884 2.034879 CATCTCCGCACACACACCC 61.035 63.158 0.00 0.00 0.00 4.61
3986 5885 2.217038 ATCTCCGCACACACACCCT 61.217 57.895 0.00 0.00 0.00 4.34
3987 5886 0.902984 ATCTCCGCACACACACCCTA 60.903 55.000 0.00 0.00 0.00 3.53
3988 5887 0.902984 TCTCCGCACACACACCCTAT 60.903 55.000 0.00 0.00 0.00 2.57
3989 5888 0.460284 CTCCGCACACACACCCTATC 60.460 60.000 0.00 0.00 0.00 2.08
3990 5889 1.449601 CCGCACACACACCCTATCC 60.450 63.158 0.00 0.00 0.00 2.59
3991 5890 1.449601 CGCACACACACCCTATCCC 60.450 63.158 0.00 0.00 0.00 3.85
3992 5891 1.899437 CGCACACACACCCTATCCCT 61.899 60.000 0.00 0.00 0.00 4.20
3993 5892 1.200519 GCACACACACCCTATCCCTA 58.799 55.000 0.00 0.00 0.00 3.53
3994 5893 1.768870 GCACACACACCCTATCCCTAT 59.231 52.381 0.00 0.00 0.00 2.57
3995 5894 2.485479 GCACACACACCCTATCCCTATG 60.485 54.545 0.00 0.00 0.00 2.23
3996 5895 3.038280 CACACACACCCTATCCCTATGA 58.962 50.000 0.00 0.00 0.00 2.15
3997 5896 3.070159 CACACACACCCTATCCCTATGAG 59.930 52.174 0.00 0.00 0.00 2.90
3998 5897 3.052109 ACACACACCCTATCCCTATGAGA 60.052 47.826 0.00 0.00 0.00 3.27
3999 5898 3.576118 CACACACCCTATCCCTATGAGAG 59.424 52.174 0.00 0.00 31.87 3.20
4000 5899 2.564947 CACACCCTATCCCTATGAGAGC 59.435 54.545 0.00 0.00 30.65 4.09
4001 5900 2.180086 ACACCCTATCCCTATGAGAGCA 59.820 50.000 0.00 0.00 30.65 4.26
4002 5901 3.181402 ACACCCTATCCCTATGAGAGCAT 60.181 47.826 0.00 0.00 38.54 3.79
4003 5902 3.450457 CACCCTATCCCTATGAGAGCATC 59.550 52.174 0.00 0.00 35.94 3.91
4017 5916 3.896648 GAGCATCTCCGAGAGACTTAG 57.103 52.381 4.07 0.08 41.76 2.18
4018 5917 1.953686 AGCATCTCCGAGAGACTTAGC 59.046 52.381 4.07 7.99 41.76 3.09
4019 5918 1.334599 GCATCTCCGAGAGACTTAGCG 60.335 57.143 4.07 0.00 41.76 4.26
4020 5919 1.265635 CATCTCCGAGAGACTTAGCGG 59.734 57.143 4.07 0.00 41.76 5.52
4022 5921 0.658897 CTCCGAGAGACTTAGCGGAC 59.341 60.000 9.38 0.00 46.80 4.79
4023 5922 0.035725 TCCGAGAGACTTAGCGGACA 60.036 55.000 9.38 0.00 46.80 4.02
4024 5923 0.099082 CCGAGAGACTTAGCGGACAC 59.901 60.000 0.00 0.00 46.29 3.67
4025 5924 0.803117 CGAGAGACTTAGCGGACACA 59.197 55.000 0.00 0.00 0.00 3.72
4026 5925 1.466024 CGAGAGACTTAGCGGACACAC 60.466 57.143 0.00 0.00 0.00 3.82
4027 5926 1.813786 GAGAGACTTAGCGGACACACT 59.186 52.381 0.00 0.00 0.00 3.55
4028 5927 2.229302 GAGAGACTTAGCGGACACACTT 59.771 50.000 0.00 0.00 0.00 3.16
4029 5928 2.029828 AGAGACTTAGCGGACACACTTG 60.030 50.000 0.00 0.00 0.00 3.16
4030 5929 1.961394 AGACTTAGCGGACACACTTGA 59.039 47.619 0.00 0.00 0.00 3.02
4031 5930 2.029828 AGACTTAGCGGACACACTTGAG 60.030 50.000 0.00 0.00 0.00 3.02
4032 5931 1.961394 ACTTAGCGGACACACTTGAGA 59.039 47.619 0.00 0.00 0.00 3.27
4033 5932 2.029828 ACTTAGCGGACACACTTGAGAG 60.030 50.000 0.00 0.00 0.00 3.20
4034 5933 0.243907 TAGCGGACACACTTGAGAGC 59.756 55.000 0.00 0.00 0.00 4.09
4035 5934 2.029844 GCGGACACACTTGAGAGCC 61.030 63.158 0.00 0.00 0.00 4.70
4036 5935 1.367471 CGGACACACTTGAGAGCCA 59.633 57.895 0.00 0.00 0.00 4.75
4037 5936 0.946221 CGGACACACTTGAGAGCCAC 60.946 60.000 0.00 0.00 0.00 5.01
4038 5937 0.106708 GGACACACTTGAGAGCCACA 59.893 55.000 0.00 0.00 0.00 4.17
4039 5938 1.271054 GGACACACTTGAGAGCCACAT 60.271 52.381 0.00 0.00 0.00 3.21
4040 5939 2.498167 GACACACTTGAGAGCCACATT 58.502 47.619 0.00 0.00 0.00 2.71
4041 5940 2.880890 GACACACTTGAGAGCCACATTT 59.119 45.455 0.00 0.00 0.00 2.32
4042 5941 3.290710 ACACACTTGAGAGCCACATTTT 58.709 40.909 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.931948 GGCACACAATCTACTATTTGTATACCT 59.068 37.037 0.00 0.00 34.42 3.08
1 2 7.931948 AGGCACACAATCTACTATTTGTATACC 59.068 37.037 0.00 0.00 34.42 2.73
2 3 8.888579 AGGCACACAATCTACTATTTGTATAC 57.111 34.615 0.00 0.00 34.42 1.47
6 7 9.899661 TTAATAGGCACACAATCTACTATTTGT 57.100 29.630 0.00 0.00 36.53 2.83
12 13 7.985752 GGTTAGTTAATAGGCACACAATCTACT 59.014 37.037 0.00 0.00 0.00 2.57
13 14 7.226128 GGGTTAGTTAATAGGCACACAATCTAC 59.774 40.741 0.00 0.00 0.00 2.59
14 15 7.126726 AGGGTTAGTTAATAGGCACACAATCTA 59.873 37.037 0.00 0.00 0.00 1.98
15 16 6.069615 AGGGTTAGTTAATAGGCACACAATCT 60.070 38.462 0.00 0.00 0.00 2.40
16 17 6.038271 CAGGGTTAGTTAATAGGCACACAATC 59.962 42.308 0.00 0.00 0.00 2.67
17 18 5.885912 CAGGGTTAGTTAATAGGCACACAAT 59.114 40.000 0.00 0.00 0.00 2.71
18 19 5.250200 CAGGGTTAGTTAATAGGCACACAA 58.750 41.667 0.00 0.00 0.00 3.33
19 20 4.839121 CAGGGTTAGTTAATAGGCACACA 58.161 43.478 0.00 0.00 0.00 3.72
20 21 3.626217 GCAGGGTTAGTTAATAGGCACAC 59.374 47.826 0.00 0.00 0.00 3.82
21 22 3.371166 GGCAGGGTTAGTTAATAGGCACA 60.371 47.826 0.00 0.00 0.00 4.57
22 23 3.118000 AGGCAGGGTTAGTTAATAGGCAC 60.118 47.826 0.00 0.00 0.00 5.01
23 24 3.120108 AGGCAGGGTTAGTTAATAGGCA 58.880 45.455 0.00 0.00 0.00 4.75
24 25 3.741249 GAGGCAGGGTTAGTTAATAGGC 58.259 50.000 0.00 0.00 0.00 3.93
25 26 3.244112 CCGAGGCAGGGTTAGTTAATAGG 60.244 52.174 0.00 0.00 0.00 2.57
26 27 3.802675 GCCGAGGCAGGGTTAGTTAATAG 60.803 52.174 9.58 0.00 41.49 1.73
27 28 2.103601 GCCGAGGCAGGGTTAGTTAATA 59.896 50.000 9.58 0.00 41.49 0.98
28 29 1.134189 GCCGAGGCAGGGTTAGTTAAT 60.134 52.381 9.58 0.00 41.49 1.40
29 30 0.251073 GCCGAGGCAGGGTTAGTTAA 59.749 55.000 9.58 0.00 41.49 2.01
30 31 0.616679 AGCCGAGGCAGGGTTAGTTA 60.617 55.000 17.18 0.00 44.88 2.24
31 32 1.900545 GAGCCGAGGCAGGGTTAGTT 61.901 60.000 17.18 0.00 42.85 2.24
32 33 2.284699 AGCCGAGGCAGGGTTAGT 60.285 61.111 17.18 0.00 44.88 2.24
33 34 1.690219 ATGAGCCGAGGCAGGGTTAG 61.690 60.000 17.18 0.00 42.85 2.34
34 35 0.397957 TATGAGCCGAGGCAGGGTTA 60.398 55.000 17.18 2.03 42.85 2.85
35 36 1.271840 TTATGAGCCGAGGCAGGGTT 61.272 55.000 17.18 0.00 42.85 4.11
36 37 1.271840 TTTATGAGCCGAGGCAGGGT 61.272 55.000 17.18 3.39 45.90 4.34
37 38 0.533755 CTTTATGAGCCGAGGCAGGG 60.534 60.000 17.18 0.00 44.88 4.45
38 39 0.533755 CCTTTATGAGCCGAGGCAGG 60.534 60.000 17.18 9.06 44.88 4.85
39 40 0.465705 TCCTTTATGAGCCGAGGCAG 59.534 55.000 17.18 3.48 44.88 4.85
40 41 1.131638 ATCCTTTATGAGCCGAGGCA 58.868 50.000 17.18 0.00 44.88 4.75
41 42 1.517242 CATCCTTTATGAGCCGAGGC 58.483 55.000 5.89 5.89 37.86 4.70
42 43 1.071385 AGCATCCTTTATGAGCCGAGG 59.929 52.381 0.00 0.00 37.86 4.63
43 44 2.411904 GAGCATCCTTTATGAGCCGAG 58.588 52.381 0.00 0.00 37.86 4.63
44 45 1.269778 CGAGCATCCTTTATGAGCCGA 60.270 52.381 0.00 0.00 37.86 5.54
45 46 1.143305 CGAGCATCCTTTATGAGCCG 58.857 55.000 0.00 0.00 37.86 5.52
46 47 2.411904 CTCGAGCATCCTTTATGAGCC 58.588 52.381 0.00 0.00 37.86 4.70
47 48 2.411904 CCTCGAGCATCCTTTATGAGC 58.588 52.381 6.99 0.00 37.86 4.26
48 49 2.411904 GCCTCGAGCATCCTTTATGAG 58.588 52.381 6.99 0.00 42.97 2.90
49 50 2.533266 GCCTCGAGCATCCTTTATGA 57.467 50.000 6.99 0.00 42.97 2.15
60 61 0.822164 TGTAAACCCTAGCCTCGAGC 59.178 55.000 6.99 2.54 44.25 5.03
61 62 3.821421 AATGTAAACCCTAGCCTCGAG 57.179 47.619 5.13 5.13 0.00 4.04
62 63 5.601313 AGATTAATGTAAACCCTAGCCTCGA 59.399 40.000 0.00 0.00 0.00 4.04
63 64 5.855045 AGATTAATGTAAACCCTAGCCTCG 58.145 41.667 0.00 0.00 0.00 4.63
64 65 8.648693 TCTAAGATTAATGTAAACCCTAGCCTC 58.351 37.037 0.00 0.00 0.00 4.70
65 66 8.562949 TCTAAGATTAATGTAAACCCTAGCCT 57.437 34.615 0.00 0.00 0.00 4.58
66 67 9.220767 CATCTAAGATTAATGTAAACCCTAGCC 57.779 37.037 0.00 0.00 0.00 3.93
67 68 9.220767 CCATCTAAGATTAATGTAAACCCTAGC 57.779 37.037 0.00 0.00 0.00 3.42
86 87 4.897076 TCCACCGCTTTAGATACCATCTAA 59.103 41.667 4.82 4.82 46.93 2.10
87 88 4.476297 TCCACCGCTTTAGATACCATCTA 58.524 43.478 0.00 0.00 40.76 1.98
88 89 3.305720 TCCACCGCTTTAGATACCATCT 58.694 45.455 0.00 0.00 43.33 2.90
89 90 3.069729 ACTCCACCGCTTTAGATACCATC 59.930 47.826 0.00 0.00 0.00 3.51
90 91 3.039011 ACTCCACCGCTTTAGATACCAT 58.961 45.455 0.00 0.00 0.00 3.55
91 92 2.463752 ACTCCACCGCTTTAGATACCA 58.536 47.619 0.00 0.00 0.00 3.25
92 93 3.635836 ACTACTCCACCGCTTTAGATACC 59.364 47.826 0.00 0.00 0.00 2.73
93 94 4.579753 AGACTACTCCACCGCTTTAGATAC 59.420 45.833 0.00 0.00 0.00 2.24
94 95 4.789807 AGACTACTCCACCGCTTTAGATA 58.210 43.478 0.00 0.00 0.00 1.98
95 96 3.633418 AGACTACTCCACCGCTTTAGAT 58.367 45.455 0.00 0.00 0.00 1.98
96 97 3.083122 AGACTACTCCACCGCTTTAGA 57.917 47.619 0.00 0.00 0.00 2.10
97 98 3.429135 GGAAGACTACTCCACCGCTTTAG 60.429 52.174 0.00 0.00 0.00 1.85
98 99 2.494870 GGAAGACTACTCCACCGCTTTA 59.505 50.000 0.00 0.00 0.00 1.85
99 100 1.275573 GGAAGACTACTCCACCGCTTT 59.724 52.381 0.00 0.00 0.00 3.51
100 101 0.896226 GGAAGACTACTCCACCGCTT 59.104 55.000 0.00 0.00 0.00 4.68
101 102 0.039911 AGGAAGACTACTCCACCGCT 59.960 55.000 0.00 0.00 0.00 5.52
102 103 0.173708 CAGGAAGACTACTCCACCGC 59.826 60.000 0.00 0.00 0.00 5.68
103 104 0.818296 CCAGGAAGACTACTCCACCG 59.182 60.000 0.00 0.00 0.00 4.94
104 105 2.233305 TCCAGGAAGACTACTCCACC 57.767 55.000 0.00 0.00 0.00 4.61
105 106 2.093921 GCTTCCAGGAAGACTACTCCAC 60.094 54.545 30.67 7.56 41.71 4.02
106 107 2.180276 GCTTCCAGGAAGACTACTCCA 58.820 52.381 30.67 0.00 41.71 3.86
107 108 1.483004 GGCTTCCAGGAAGACTACTCC 59.517 57.143 30.67 17.55 43.75 3.85
108 109 1.135333 CGGCTTCCAGGAAGACTACTC 59.865 57.143 30.67 12.73 44.83 2.59
109 110 1.187087 CGGCTTCCAGGAAGACTACT 58.813 55.000 30.67 0.00 44.83 2.57
110 111 1.135053 GTCGGCTTCCAGGAAGACTAC 60.135 57.143 30.67 25.73 44.83 2.73
111 112 1.183549 GTCGGCTTCCAGGAAGACTA 58.816 55.000 30.67 18.95 44.83 2.59
112 113 1.545706 GGTCGGCTTCCAGGAAGACT 61.546 60.000 30.67 0.00 44.83 3.24
113 114 1.079057 GGTCGGCTTCCAGGAAGAC 60.079 63.158 30.67 27.49 43.67 3.01
114 115 1.229209 AGGTCGGCTTCCAGGAAGA 60.229 57.895 30.67 9.38 41.71 2.87
115 116 1.219393 GAGGTCGGCTTCCAGGAAG 59.781 63.158 23.49 23.49 42.03 3.46
116 117 2.291043 GGAGGTCGGCTTCCAGGAA 61.291 63.158 14.12 0.71 40.28 3.36
117 118 2.683933 GGAGGTCGGCTTCCAGGA 60.684 66.667 14.12 0.00 40.28 3.86
118 119 2.294078 AAGGAGGTCGGCTTCCAGG 61.294 63.158 21.31 0.00 42.72 4.45
119 120 1.078848 CAAGGAGGTCGGCTTCCAG 60.079 63.158 21.31 8.59 42.72 3.86
120 121 1.415672 AACAAGGAGGTCGGCTTCCA 61.416 55.000 21.31 0.00 42.72 3.53
121 122 0.250770 AAACAAGGAGGTCGGCTTCC 60.251 55.000 10.75 10.75 40.80 3.46
122 123 1.266989 CAAAACAAGGAGGTCGGCTTC 59.733 52.381 0.00 0.00 0.00 3.86
123 124 1.318576 CAAAACAAGGAGGTCGGCTT 58.681 50.000 0.00 0.00 0.00 4.35
124 125 0.182775 ACAAAACAAGGAGGTCGGCT 59.817 50.000 0.00 0.00 0.00 5.52
125 126 0.310854 CACAAAACAAGGAGGTCGGC 59.689 55.000 0.00 0.00 0.00 5.54
126 127 0.310854 GCACAAAACAAGGAGGTCGG 59.689 55.000 0.00 0.00 0.00 4.79
127 128 1.308998 AGCACAAAACAAGGAGGTCG 58.691 50.000 0.00 0.00 0.00 4.79
128 129 2.687935 TGAAGCACAAAACAAGGAGGTC 59.312 45.455 0.00 0.00 0.00 3.85
129 130 2.733956 TGAAGCACAAAACAAGGAGGT 58.266 42.857 0.00 0.00 0.00 3.85
130 131 3.131046 ACTTGAAGCACAAAACAAGGAGG 59.869 43.478 0.00 0.00 42.39 4.30
131 132 4.376340 ACTTGAAGCACAAAACAAGGAG 57.624 40.909 0.00 0.00 42.39 3.69
132 133 4.381505 GGAACTTGAAGCACAAAACAAGGA 60.382 41.667 0.00 0.00 42.39 3.36
133 134 3.865164 GGAACTTGAAGCACAAAACAAGG 59.135 43.478 0.00 0.00 42.39 3.61
134 135 3.865164 GGGAACTTGAAGCACAAAACAAG 59.135 43.478 0.00 0.00 43.30 3.16
135 136 3.368948 GGGGAACTTGAAGCACAAAACAA 60.369 43.478 0.00 0.00 38.08 2.83
136 137 2.167487 GGGGAACTTGAAGCACAAAACA 59.833 45.455 0.00 0.00 38.08 2.83
137 138 2.798145 CGGGGAACTTGAAGCACAAAAC 60.798 50.000 0.00 0.00 38.08 2.43
138 139 1.407258 CGGGGAACTTGAAGCACAAAA 59.593 47.619 0.00 0.00 38.08 2.44
139 140 1.028905 CGGGGAACTTGAAGCACAAA 58.971 50.000 0.00 0.00 38.08 2.83
140 141 0.821711 CCGGGGAACTTGAAGCACAA 60.822 55.000 0.00 0.00 36.97 3.33
141 142 1.228124 CCGGGGAACTTGAAGCACA 60.228 57.895 0.00 0.00 0.00 4.57
142 143 1.971695 CCCGGGGAACTTGAAGCAC 60.972 63.158 14.71 0.00 0.00 4.40
143 144 2.434331 CCCGGGGAACTTGAAGCA 59.566 61.111 14.71 0.00 0.00 3.91
144 145 3.062466 GCCCGGGGAACTTGAAGC 61.062 66.667 25.28 0.00 0.00 3.86
145 146 2.361230 GGCCCGGGGAACTTGAAG 60.361 66.667 25.28 0.00 0.00 3.02
146 147 2.420466 GAAGGCCCGGGGAACTTGAA 62.420 60.000 25.28 0.00 0.00 2.69
147 148 2.856988 AAGGCCCGGGGAACTTGA 60.857 61.111 25.28 0.00 0.00 3.02
148 149 2.361230 GAAGGCCCGGGGAACTTG 60.361 66.667 25.28 0.00 0.00 3.16
149 150 3.658422 GGAAGGCCCGGGGAACTT 61.658 66.667 25.28 19.60 0.00 2.66
159 160 4.442038 CCTTTGGAAGGGAAGGCC 57.558 61.111 0.00 0.00 45.27 5.19
167 168 0.542702 ACATGTGGGCCCTTTGGAAG 60.543 55.000 25.70 8.89 0.00 3.46
168 169 0.831288 CACATGTGGGCCCTTTGGAA 60.831 55.000 25.70 0.00 0.00 3.53
169 170 1.228831 CACATGTGGGCCCTTTGGA 60.229 57.895 25.70 0.00 0.00 3.53
170 171 2.285024 CCACATGTGGGCCCTTTGG 61.285 63.158 33.56 17.29 46.81 3.28
171 172 3.379880 CCACATGTGGGCCCTTTG 58.620 61.111 33.56 19.39 46.81 2.77
180 181 0.742505 GTGCCATGATCCCACATGTG 59.257 55.000 19.31 19.31 44.00 3.21
181 182 0.749091 CGTGCCATGATCCCACATGT 60.749 55.000 0.00 0.00 44.00 3.21
182 183 1.449726 CCGTGCCATGATCCCACATG 61.450 60.000 0.00 0.00 44.78 3.21
183 184 1.152902 CCGTGCCATGATCCCACAT 60.153 57.895 0.00 0.00 0.00 3.21
184 185 2.271821 CCGTGCCATGATCCCACA 59.728 61.111 0.00 0.00 0.00 4.17
185 186 2.516930 CCCGTGCCATGATCCCAC 60.517 66.667 0.00 0.00 0.00 4.61
186 187 3.014538 ACCCGTGCCATGATCCCA 61.015 61.111 0.00 0.00 0.00 4.37
187 188 2.516930 CACCCGTGCCATGATCCC 60.517 66.667 0.00 0.00 0.00 3.85
211 212 3.327404 TTCGAGGCCCCCAAGGTC 61.327 66.667 0.00 0.00 42.50 3.85
212 213 3.647771 GTTCGAGGCCCCCAAGGT 61.648 66.667 0.00 0.00 38.26 3.50
213 214 4.426313 GGTTCGAGGCCCCCAAGG 62.426 72.222 0.00 0.00 39.47 3.61
214 215 4.778143 CGGTTCGAGGCCCCCAAG 62.778 72.222 0.00 0.00 0.00 3.61
219 220 4.772687 GAACCCGGTTCGAGGCCC 62.773 72.222 14.56 0.00 32.81 5.80
220 221 4.772687 GGAACCCGGTTCGAGGCC 62.773 72.222 21.55 6.71 42.78 5.19
221 222 3.660732 GAGGAACCCGGTTCGAGGC 62.661 68.421 21.55 9.66 42.78 4.70
222 223 2.577593 GAGGAACCCGGTTCGAGG 59.422 66.667 21.55 0.00 42.78 4.63
223 224 2.181021 CGAGGAACCCGGTTCGAG 59.819 66.667 21.55 12.54 42.78 4.04
224 225 4.060038 GCGAGGAACCCGGTTCGA 62.060 66.667 21.55 0.00 42.78 3.71
257 258 7.129457 TCAACATAAATCAGAGCTGGAGTAT 57.871 36.000 0.00 0.00 0.00 2.12
274 275 7.115414 TCATTGTACCACATCCAATCAACATA 58.885 34.615 0.00 0.00 0.00 2.29
275 276 5.951148 TCATTGTACCACATCCAATCAACAT 59.049 36.000 0.00 0.00 0.00 2.71
276 277 5.320277 TCATTGTACCACATCCAATCAACA 58.680 37.500 0.00 0.00 0.00 3.33
277 278 5.415701 ACTCATTGTACCACATCCAATCAAC 59.584 40.000 0.00 0.00 0.00 3.18
332 333 6.503589 AGACACACAATCTACTCTCTGTAC 57.496 41.667 0.00 0.00 0.00 2.90
337 338 7.979115 GTCAATAGACACACAATCTACTCTC 57.021 40.000 0.00 0.00 44.34 3.20
431 432 2.449967 TTAGGCCGACTCCTCCACCA 62.450 60.000 0.00 0.00 37.66 4.17
444 445 1.078637 GGAGGTCGGTGTTTAGGCC 60.079 63.158 0.00 0.00 0.00 5.19
445 446 0.323957 AAGGAGGTCGGTGTTTAGGC 59.676 55.000 0.00 0.00 0.00 3.93
449 450 2.425668 CAAAACAAGGAGGTCGGTGTTT 59.574 45.455 0.00 0.00 44.01 2.83
450 451 2.021457 CAAAACAAGGAGGTCGGTGTT 58.979 47.619 0.00 0.00 35.77 3.32
452 453 1.333619 CACAAAACAAGGAGGTCGGTG 59.666 52.381 0.00 0.00 0.00 4.94
453 454 1.675552 CACAAAACAAGGAGGTCGGT 58.324 50.000 0.00 0.00 0.00 4.69
477 478 2.486727 GGAAAGACCCGTGGAACTTCTT 60.487 50.000 0.00 0.00 31.85 2.52
478 479 1.071857 GGAAAGACCCGTGGAACTTCT 59.928 52.381 0.00 0.00 31.75 2.85
479 480 1.071857 AGGAAAGACCCGTGGAACTTC 59.928 52.381 0.00 0.00 40.05 3.01
487 488 0.977395 CTCTGGAAGGAAAGACCCGT 59.023 55.000 0.00 0.00 40.05 5.28
514 515 3.614870 GCACCTTTTTCATGATCCCACAC 60.615 47.826 0.00 0.00 0.00 3.82
527 528 2.719354 GTCGGCGTGCACCTTTTT 59.281 55.556 12.15 0.00 0.00 1.94
531 532 4.988598 CAAGGTCGGCGTGCACCT 62.989 66.667 12.15 12.49 45.59 4.00
654 655 0.250338 GAAATTATCCGGGCTCGCCT 60.250 55.000 0.00 0.00 36.10 5.52
677 678 1.001597 GCGATAGTTAGTGGAGGACGG 60.002 57.143 0.00 0.00 39.35 4.79
678 679 1.001597 GGCGATAGTTAGTGGAGGACG 60.002 57.143 0.00 0.00 39.35 4.79
679 680 2.029623 TGGCGATAGTTAGTGGAGGAC 58.970 52.381 0.00 0.00 39.35 3.85
680 681 2.029623 GTGGCGATAGTTAGTGGAGGA 58.970 52.381 0.00 0.00 39.35 3.71
682 683 2.799917 GCTGTGGCGATAGTTAGTGGAG 60.800 54.545 0.00 0.00 39.35 3.86
704 705 0.179200 CCGACTATGTTGCGTTTGCC 60.179 55.000 0.00 0.00 41.78 4.52
709 710 0.821517 TGGATCCGACTATGTTGCGT 59.178 50.000 7.39 0.00 0.00 5.24
722 723 5.529581 TTTTTCCTGACTTTGTTGGATCC 57.470 39.130 4.20 4.20 0.00 3.36
723 724 5.928264 CCATTTTTCCTGACTTTGTTGGATC 59.072 40.000 0.00 0.00 0.00 3.36
724 725 5.742838 GCCATTTTTCCTGACTTTGTTGGAT 60.743 40.000 0.00 0.00 0.00 3.41
725 726 4.442753 GCCATTTTTCCTGACTTTGTTGGA 60.443 41.667 0.00 0.00 0.00 3.53
730 855 5.912360 GAAAGCCATTTTTCCTGACTTTG 57.088 39.130 0.00 0.00 32.22 2.77
794 919 1.561643 TCTGCTTACTGCTAGGTGCT 58.438 50.000 0.00 0.00 43.37 4.40
800 925 4.730949 ATACCGTTTCTGCTTACTGCTA 57.269 40.909 0.00 0.00 43.37 3.49
830 956 2.666596 ATTGGAGGCTCGAATCCGCC 62.667 60.000 17.71 16.08 46.65 6.13
886 1017 3.716601 ACTGGTTTGCTTTTCGAATTGG 58.283 40.909 0.00 0.00 0.00 3.16
1025 1186 2.197324 CGAGGAGGAGGAGGAGGG 59.803 72.222 0.00 0.00 0.00 4.30
1590 1768 5.545723 AGCTGCTAGTATCCATCCAGTAAAT 59.454 40.000 0.00 0.00 0.00 1.40
1683 1879 5.351948 AGCCTCTAGAAAGATCAAAGTCC 57.648 43.478 0.00 0.00 0.00 3.85
1712 1909 3.118038 AGTCAAAGCAAACTACCACTGGA 60.118 43.478 0.71 0.00 0.00 3.86
1713 1910 3.214328 AGTCAAAGCAAACTACCACTGG 58.786 45.455 0.00 0.00 0.00 4.00
1714 1911 6.371809 TTTAGTCAAAGCAAACTACCACTG 57.628 37.500 0.00 0.00 0.00 3.66
1806 2005 7.612244 TCCCATCTATCGTTTTCCATGTAAAAA 59.388 33.333 0.00 0.00 30.53 1.94
1847 2046 3.631686 GGATGCAACCACACATGCTAATA 59.368 43.478 8.36 0.00 42.97 0.98
1907 2112 5.908341 AGTAAGCCTCTAGAAATGTACAGC 58.092 41.667 0.33 0.00 0.00 4.40
1999 2206 3.745975 TGTTATCAGTCAGCTTGTTTCCG 59.254 43.478 0.00 0.00 0.00 4.30
2062 2300 4.884744 AGAGTGCTACGATGAACTGATACT 59.115 41.667 0.00 0.00 0.00 2.12
2063 2301 5.176407 AGAGTGCTACGATGAACTGATAC 57.824 43.478 0.00 0.00 0.00 2.24
2150 2390 4.777896 ACACAGTACCTCAGGAATGTACAT 59.222 41.667 1.41 1.41 37.82 2.29
2365 2605 5.121105 GCTTACCGGTTCTGTATTACCATT 58.879 41.667 15.04 0.00 33.94 3.16
2403 2643 3.538591 CACTTCATTGGCATCTCTAGCA 58.461 45.455 0.00 0.00 0.00 3.49
2404 2644 2.290093 GCACTTCATTGGCATCTCTAGC 59.710 50.000 0.00 0.00 0.00 3.42
2478 4302 4.062293 CCGTTGAGGATACACAGTTCAAA 58.938 43.478 0.00 0.00 45.00 2.69
2630 4468 0.036010 ACAAAGATCGTCCAGCTGGG 60.036 55.000 32.23 17.56 35.41 4.45
2634 4472 1.667724 CCATCACAAAGATCGTCCAGC 59.332 52.381 0.00 0.00 33.72 4.85
2637 4475 6.984474 TCTTAATACCATCACAAAGATCGTCC 59.016 38.462 0.00 0.00 33.72 4.79
2730 4571 3.895041 CACTGACCAACCCCAAGTTTAAT 59.105 43.478 0.00 0.00 36.18 1.40
2736 4578 2.436417 CATACACTGACCAACCCCAAG 58.564 52.381 0.00 0.00 0.00 3.61
2771 4613 6.040504 ACGCCGCTTGGATAATGATATATCTA 59.959 38.462 13.79 0.00 33.63 1.98
2791 4651 2.268298 AGTGTAGCTATTTTCACGCCG 58.732 47.619 0.00 0.00 36.16 6.46
3222 5095 4.840271 TCAGCCATAGCAATAGATCCATG 58.160 43.478 0.00 0.00 43.56 3.66
3240 5113 8.550376 TGCTCAATTTAAAAATGTTTCTTCAGC 58.450 29.630 0.00 0.00 0.00 4.26
3337 5213 0.183971 TCCAAAAGGAAACGGAGCCA 59.816 50.000 0.00 0.00 0.00 4.75
3339 5215 3.255888 AGAATTCCAAAAGGAAACGGAGC 59.744 43.478 0.65 0.00 0.00 4.70
3404 5280 8.426881 AAGAAGAGTTTGTAAACAGAGAAGTC 57.573 34.615 9.85 0.00 41.30 3.01
3419 5295 9.424319 GAAAAACCAAGAAGAAAAGAAGAGTTT 57.576 29.630 0.00 0.00 0.00 2.66
3420 5296 8.807118 AGAAAAACCAAGAAGAAAAGAAGAGTT 58.193 29.630 0.00 0.00 0.00 3.01
3427 5303 8.532977 TTCACAAGAAAAACCAAGAAGAAAAG 57.467 30.769 0.00 0.00 0.00 2.27
3456 5332 6.262049 CAGGTCTCTATATAGGGATGTCATCG 59.738 46.154 15.43 0.00 34.86 3.84
3836 5735 2.239681 ACCAACCACCAACAGGAAAA 57.760 45.000 0.00 0.00 0.00 2.29
3864 5763 1.001633 ACTTCGCATTAACACGAGGGT 59.998 47.619 13.36 8.86 39.43 4.34
3865 5764 1.393539 CACTTCGCATTAACACGAGGG 59.606 52.381 13.36 8.39 39.43 4.30
3866 5765 2.066262 ACACTTCGCATTAACACGAGG 58.934 47.619 8.86 8.86 39.81 4.63
3867 5766 4.026804 GGATACACTTCGCATTAACACGAG 60.027 45.833 0.00 0.00 39.81 4.18
3868 5767 3.861113 GGATACACTTCGCATTAACACGA 59.139 43.478 0.00 0.00 36.32 4.35
3869 5768 3.863424 AGGATACACTTCGCATTAACACG 59.137 43.478 0.00 0.00 41.41 4.49
3870 5769 4.494199 GCAGGATACACTTCGCATTAACAC 60.494 45.833 0.00 0.00 41.41 3.32
3871 5770 3.621268 GCAGGATACACTTCGCATTAACA 59.379 43.478 0.00 0.00 41.41 2.41
3872 5771 3.871594 AGCAGGATACACTTCGCATTAAC 59.128 43.478 0.00 0.00 41.41 2.01
3873 5772 4.137116 AGCAGGATACACTTCGCATTAA 57.863 40.909 0.00 0.00 41.41 1.40
3874 5773 3.819564 AGCAGGATACACTTCGCATTA 57.180 42.857 0.00 0.00 41.41 1.90
3875 5774 2.698855 AGCAGGATACACTTCGCATT 57.301 45.000 0.00 0.00 41.41 3.56
3876 5775 3.819564 TTAGCAGGATACACTTCGCAT 57.180 42.857 0.00 0.00 41.41 4.73
3877 5776 3.819564 ATTAGCAGGATACACTTCGCA 57.180 42.857 0.00 0.00 41.41 5.10
3878 5777 6.787085 AATTATTAGCAGGATACACTTCGC 57.213 37.500 0.00 0.00 41.41 4.70
3918 5817 2.597305 CGTTCATAGCGGTGAGTGTAAC 59.403 50.000 0.00 0.85 0.00 2.50
3919 5818 2.871133 CGTTCATAGCGGTGAGTGTAA 58.129 47.619 0.00 0.00 0.00 2.41
3920 5819 1.468565 GCGTTCATAGCGGTGAGTGTA 60.469 52.381 0.00 0.00 0.00 2.90
3921 5820 0.736325 GCGTTCATAGCGGTGAGTGT 60.736 55.000 0.00 0.00 0.00 3.55
3922 5821 0.735978 TGCGTTCATAGCGGTGAGTG 60.736 55.000 0.00 0.00 37.44 3.51
3923 5822 0.736325 GTGCGTTCATAGCGGTGAGT 60.736 55.000 0.00 0.00 37.44 3.41
3924 5823 1.742900 CGTGCGTTCATAGCGGTGAG 61.743 60.000 0.00 0.00 37.44 3.51
3925 5824 1.803922 CGTGCGTTCATAGCGGTGA 60.804 57.895 0.00 0.00 37.44 4.02
3926 5825 2.695055 CGTGCGTTCATAGCGGTG 59.305 61.111 0.00 0.00 37.44 4.94
3927 5826 3.186047 GCGTGCGTTCATAGCGGT 61.186 61.111 0.00 0.00 37.44 5.68
3928 5827 3.185365 TGCGTGCGTTCATAGCGG 61.185 61.111 0.00 0.00 37.44 5.52
3929 5828 2.020016 GTGCGTGCGTTCATAGCG 59.980 61.111 0.00 0.00 37.44 4.26
3930 5829 1.225745 GTGTGCGTGCGTTCATAGC 60.226 57.895 0.00 0.00 0.00 2.97
3931 5830 0.179250 GTGTGTGCGTGCGTTCATAG 60.179 55.000 0.00 0.00 0.00 2.23
3932 5831 1.561717 GGTGTGTGCGTGCGTTCATA 61.562 55.000 0.00 0.00 0.00 2.15
3933 5832 2.631428 GTGTGTGCGTGCGTTCAT 59.369 55.556 0.00 0.00 0.00 2.57
3934 5833 3.568743 GGTGTGTGCGTGCGTTCA 61.569 61.111 0.00 0.00 0.00 3.18
3935 5834 4.307908 GGGTGTGTGCGTGCGTTC 62.308 66.667 0.00 0.00 0.00 3.95
3936 5835 2.725203 ATAGGGTGTGTGCGTGCGTT 62.725 55.000 0.00 0.00 0.00 4.84
3937 5836 3.234630 ATAGGGTGTGTGCGTGCGT 62.235 57.895 0.00 0.00 0.00 5.24
3938 5837 2.434185 ATAGGGTGTGTGCGTGCG 60.434 61.111 0.00 0.00 0.00 5.34
3939 5838 2.106683 GGATAGGGTGTGTGCGTGC 61.107 63.158 0.00 0.00 0.00 5.34
3940 5839 1.449601 GGGATAGGGTGTGTGCGTG 60.450 63.158 0.00 0.00 0.00 5.34
3941 5840 0.324923 TAGGGATAGGGTGTGTGCGT 60.325 55.000 0.00 0.00 0.00 5.24
3942 5841 1.048601 ATAGGGATAGGGTGTGTGCG 58.951 55.000 0.00 0.00 0.00 5.34
3943 5842 2.037772 CTCATAGGGATAGGGTGTGTGC 59.962 54.545 0.00 0.00 0.00 4.57
3944 5843 3.576118 CTCTCATAGGGATAGGGTGTGTG 59.424 52.174 0.00 0.00 0.00 3.82
3945 5844 3.850752 CTCTCATAGGGATAGGGTGTGT 58.149 50.000 0.00 0.00 0.00 3.72
3946 5845 2.564947 GCTCTCATAGGGATAGGGTGTG 59.435 54.545 0.00 0.00 0.00 3.82
3947 5846 2.180086 TGCTCTCATAGGGATAGGGTGT 59.820 50.000 0.00 0.00 0.00 4.16
3948 5847 2.894731 TGCTCTCATAGGGATAGGGTG 58.105 52.381 0.00 0.00 0.00 4.61
3949 5848 3.339436 AGATGCTCTCATAGGGATAGGGT 59.661 47.826 0.00 0.00 31.96 4.34
3950 5849 3.960102 GAGATGCTCTCATAGGGATAGGG 59.040 52.174 7.93 0.00 42.90 3.53
3951 5850 3.960102 GGAGATGCTCTCATAGGGATAGG 59.040 52.174 13.06 0.00 45.12 2.57
3952 5851 3.631686 CGGAGATGCTCTCATAGGGATAG 59.368 52.174 13.06 0.00 45.12 2.08
3953 5852 3.625853 CGGAGATGCTCTCATAGGGATA 58.374 50.000 13.06 0.00 45.12 2.59
3954 5853 2.455557 CGGAGATGCTCTCATAGGGAT 58.544 52.381 13.06 0.00 45.12 3.85
3955 5854 1.916506 CGGAGATGCTCTCATAGGGA 58.083 55.000 13.06 0.00 45.12 4.20
3956 5855 0.246086 GCGGAGATGCTCTCATAGGG 59.754 60.000 13.06 0.00 45.12 3.53
3957 5856 0.964700 TGCGGAGATGCTCTCATAGG 59.035 55.000 13.06 3.45 45.12 2.57
3958 5857 1.339291 TGTGCGGAGATGCTCTCATAG 59.661 52.381 13.06 6.77 45.12 2.23
3959 5858 1.067669 GTGTGCGGAGATGCTCTCATA 59.932 52.381 13.06 0.00 45.12 2.15
3960 5859 0.179089 GTGTGCGGAGATGCTCTCAT 60.179 55.000 13.06 0.00 45.12 2.90
3961 5860 1.216444 GTGTGCGGAGATGCTCTCA 59.784 57.895 13.06 0.00 45.12 3.27
3962 5861 1.080995 GTGTGTGCGGAGATGCTCTC 61.081 60.000 5.01 5.01 42.66 3.20
3963 5862 1.079543 GTGTGTGCGGAGATGCTCT 60.080 57.895 0.00 0.00 35.36 4.09
3964 5863 1.374631 TGTGTGTGCGGAGATGCTC 60.375 57.895 0.00 0.00 35.36 4.26
3965 5864 1.669115 GTGTGTGTGCGGAGATGCT 60.669 57.895 0.00 0.00 35.36 3.79
3966 5865 2.680913 GGTGTGTGTGCGGAGATGC 61.681 63.158 0.00 0.00 0.00 3.91
3967 5866 2.034879 GGGTGTGTGTGCGGAGATG 61.035 63.158 0.00 0.00 0.00 2.90
3968 5867 0.902984 TAGGGTGTGTGTGCGGAGAT 60.903 55.000 0.00 0.00 0.00 2.75
3969 5868 0.902984 ATAGGGTGTGTGTGCGGAGA 60.903 55.000 0.00 0.00 0.00 3.71
3970 5869 0.460284 GATAGGGTGTGTGTGCGGAG 60.460 60.000 0.00 0.00 0.00 4.63
3971 5870 1.594833 GATAGGGTGTGTGTGCGGA 59.405 57.895 0.00 0.00 0.00 5.54
3972 5871 1.449601 GGATAGGGTGTGTGTGCGG 60.450 63.158 0.00 0.00 0.00 5.69
3973 5872 1.449601 GGGATAGGGTGTGTGTGCG 60.450 63.158 0.00 0.00 0.00 5.34
3974 5873 1.200519 TAGGGATAGGGTGTGTGTGC 58.799 55.000 0.00 0.00 0.00 4.57
3975 5874 3.038280 TCATAGGGATAGGGTGTGTGTG 58.962 50.000 0.00 0.00 0.00 3.82
3976 5875 3.052109 TCTCATAGGGATAGGGTGTGTGT 60.052 47.826 0.00 0.00 0.00 3.72
3977 5876 3.576118 CTCTCATAGGGATAGGGTGTGTG 59.424 52.174 0.00 0.00 0.00 3.82
3978 5877 3.850752 CTCTCATAGGGATAGGGTGTGT 58.149 50.000 0.00 0.00 0.00 3.72
3979 5878 2.564947 GCTCTCATAGGGATAGGGTGTG 59.435 54.545 0.00 0.00 0.00 3.82
3980 5879 2.180086 TGCTCTCATAGGGATAGGGTGT 59.820 50.000 0.00 0.00 0.00 4.16
3981 5880 2.894731 TGCTCTCATAGGGATAGGGTG 58.105 52.381 0.00 0.00 0.00 4.61
3982 5881 3.339436 AGATGCTCTCATAGGGATAGGGT 59.661 47.826 0.00 0.00 31.96 4.34
3983 5882 3.960102 GAGATGCTCTCATAGGGATAGGG 59.040 52.174 7.93 0.00 42.90 3.53
3984 5883 3.960102 GGAGATGCTCTCATAGGGATAGG 59.040 52.174 13.06 0.00 45.12 2.57
3985 5884 3.631686 CGGAGATGCTCTCATAGGGATAG 59.368 52.174 13.06 0.00 45.12 2.08
3986 5885 3.267031 TCGGAGATGCTCTCATAGGGATA 59.733 47.826 13.06 0.00 45.12 2.59
3987 5886 2.042297 TCGGAGATGCTCTCATAGGGAT 59.958 50.000 13.06 0.00 45.12 3.85
3988 5887 1.425448 TCGGAGATGCTCTCATAGGGA 59.575 52.381 13.06 2.69 45.12 4.20
3989 5888 1.818060 CTCGGAGATGCTCTCATAGGG 59.182 57.143 0.00 3.21 45.12 3.53
3990 5889 2.749076 CTCTCGGAGATGCTCTCATAGG 59.251 54.545 8.39 0.00 45.12 2.57
3991 5890 3.436704 GTCTCTCGGAGATGCTCTCATAG 59.563 52.174 8.39 9.89 45.12 2.23
3992 5891 3.072330 AGTCTCTCGGAGATGCTCTCATA 59.928 47.826 8.39 2.64 45.12 2.15
3993 5892 2.158623 AGTCTCTCGGAGATGCTCTCAT 60.159 50.000 8.39 0.00 45.12 2.90
3994 5893 1.211703 AGTCTCTCGGAGATGCTCTCA 59.788 52.381 8.39 0.00 45.12 3.27
3995 5894 1.967319 AGTCTCTCGGAGATGCTCTC 58.033 55.000 8.39 5.01 40.98 3.20
3996 5895 2.435372 AAGTCTCTCGGAGATGCTCT 57.565 50.000 8.39 2.41 40.98 4.09
3997 5896 2.031157 GCTAAGTCTCTCGGAGATGCTC 60.031 54.545 8.39 0.17 40.98 4.26
3998 5897 1.953686 GCTAAGTCTCTCGGAGATGCT 59.046 52.381 8.39 6.89 40.98 3.79
3999 5898 1.334599 CGCTAAGTCTCTCGGAGATGC 60.335 57.143 8.39 4.64 40.98 3.91
4000 5899 1.265635 CCGCTAAGTCTCTCGGAGATG 59.734 57.143 8.39 3.38 44.23 2.90
4001 5900 1.141254 TCCGCTAAGTCTCTCGGAGAT 59.859 52.381 8.39 0.00 44.99 2.75
4002 5901 0.540454 TCCGCTAAGTCTCTCGGAGA 59.460 55.000 7.60 7.60 44.99 3.71
4003 5902 3.082165 TCCGCTAAGTCTCTCGGAG 57.918 57.895 0.00 0.00 44.99 4.63
4005 5904 0.099082 GTGTCCGCTAAGTCTCTCGG 59.901 60.000 0.00 0.00 42.96 4.63
4006 5905 0.803117 TGTGTCCGCTAAGTCTCTCG 59.197 55.000 0.00 0.00 0.00 4.04
4007 5906 1.813786 AGTGTGTCCGCTAAGTCTCTC 59.186 52.381 0.00 0.00 0.00 3.20
4008 5907 1.912417 AGTGTGTCCGCTAAGTCTCT 58.088 50.000 0.00 0.00 0.00 3.10
4009 5908 2.030185 TCAAGTGTGTCCGCTAAGTCTC 60.030 50.000 0.00 0.00 0.00 3.36
4010 5909 1.961394 TCAAGTGTGTCCGCTAAGTCT 59.039 47.619 0.00 0.00 0.00 3.24
4011 5910 2.030185 TCTCAAGTGTGTCCGCTAAGTC 60.030 50.000 0.00 0.00 0.00 3.01
4012 5911 1.961394 TCTCAAGTGTGTCCGCTAAGT 59.039 47.619 0.00 0.00 0.00 2.24
4013 5912 2.600731 CTCTCAAGTGTGTCCGCTAAG 58.399 52.381 0.00 0.00 0.00 2.18
4014 5913 1.336887 GCTCTCAAGTGTGTCCGCTAA 60.337 52.381 0.00 0.00 0.00 3.09
4015 5914 0.243907 GCTCTCAAGTGTGTCCGCTA 59.756 55.000 0.00 0.00 0.00 4.26
4016 5915 1.005630 GCTCTCAAGTGTGTCCGCT 60.006 57.895 0.00 0.00 0.00 5.52
4017 5916 2.029844 GGCTCTCAAGTGTGTCCGC 61.030 63.158 0.00 0.00 0.00 5.54
4018 5917 0.946221 GTGGCTCTCAAGTGTGTCCG 60.946 60.000 0.00 0.00 0.00 4.79
4019 5918 0.106708 TGTGGCTCTCAAGTGTGTCC 59.893 55.000 0.00 0.00 0.00 4.02
4020 5919 2.175878 ATGTGGCTCTCAAGTGTGTC 57.824 50.000 0.00 0.00 0.00 3.67
4021 5920 2.645838 AATGTGGCTCTCAAGTGTGT 57.354 45.000 0.00 0.00 0.00 3.72
4022 5921 3.996150 AAAATGTGGCTCTCAAGTGTG 57.004 42.857 0.00 0.00 0.00 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.