Multiple sequence alignment - TraesCS4B01G032600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G032600 chr4B 100.000 6592 0 0 1 6592 24397449 24404040 0.000000e+00 12174.0
1 TraesCS4B01G032600 chr4B 98.386 5265 33 11 836 6074 24538485 24543723 0.000000e+00 9204.0
2 TraesCS4B01G032600 chr4B 93.077 390 19 6 387 773 24538082 24538466 1.240000e-156 564.0
3 TraesCS4B01G032600 chr4B 95.484 310 10 1 6036 6341 24543719 24544028 5.940000e-135 492.0
4 TraesCS4B01G032600 chr4B 97.183 284 7 1 2827 3109 24544628 24544911 4.620000e-131 479.0
5 TraesCS4B01G032600 chr4B 93.023 86 2 2 6259 6340 24403618 24403703 8.980000e-24 122.0
6 TraesCS4B01G032600 chr4D 97.412 6259 90 28 387 6592 13743668 13749907 0.000000e+00 10595.0
7 TraesCS4B01G032600 chr4D 97.312 5766 79 21 387 6094 13927895 13933642 0.000000e+00 9720.0
8 TraesCS4B01G032600 chr4D 97.191 3809 51 21 387 4148 13838420 13842219 0.000000e+00 6390.0
9 TraesCS4B01G032600 chr4D 95.964 892 14 12 5707 6592 13842296 13843171 0.000000e+00 1428.0
10 TraesCS4B01G032600 chr4D 93.023 86 2 2 6259 6340 13842748 13842833 8.980000e-24 122.0
11 TraesCS4B01G032600 chr4D 92.683 41 2 1 1 40 13605770 13605810 2.570000e-04 58.4
12 TraesCS4B01G032600 chr4A 96.283 5219 106 26 836 6006 588615150 588620328 0.000000e+00 8482.0
13 TraesCS4B01G032600 chr4A 86.096 3028 280 54 835 3782 457235455 457238421 0.000000e+00 3129.0
14 TraesCS4B01G032600 chr4A 86.769 2857 264 48 982 3782 574159473 574156675 0.000000e+00 3077.0
15 TraesCS4B01G032600 chr4A 92.125 2146 86 28 4154 6259 574157216 574155114 0.000000e+00 2950.0
16 TraesCS4B01G032600 chr4A 92.579 1954 81 21 4151 6074 457237877 457239796 0.000000e+00 2747.0
17 TraesCS4B01G032600 chr4A 92.949 1787 69 19 4151 5917 586858590 586860339 0.000000e+00 2549.0
18 TraesCS4B01G032600 chr4A 92.825 1784 72 18 4154 5917 586919277 586917530 0.000000e+00 2534.0
19 TraesCS4B01G032600 chr4A 91.981 424 25 6 381 803 457234967 457235382 2.650000e-163 586.0
20 TraesCS4B01G032600 chr4A 89.316 468 20 12 381 838 586853565 586854012 1.610000e-155 560.0
21 TraesCS4B01G032600 chr4A 89.293 467 20 12 381 838 586892059 586892504 5.770000e-155 558.0
22 TraesCS4B01G032600 chr4A 90.137 365 18 9 6236 6589 588620431 588620788 6.020000e-125 459.0
23 TraesCS4B01G032600 chr4A 89.702 369 20 9 6236 6592 457239908 457240270 7.790000e-124 455.0
24 TraesCS4B01G032600 chr4A 86.992 369 23 9 5911 6259 586860496 586860859 6.200000e-105 392.0
25 TraesCS4B01G032600 chr4A 86.992 369 23 9 5911 6259 586917373 586917010 6.200000e-105 392.0
26 TraesCS4B01G032600 chr4A 93.304 224 15 0 6036 6259 457239792 457240015 1.370000e-86 331.0
27 TraesCS4B01G032600 chr4A 94.762 210 11 0 6050 6259 588620329 588620538 1.770000e-85 327.0
28 TraesCS4B01G032600 chr4A 91.189 227 11 3 6375 6592 574154950 574154724 3.860000e-77 300.0
29 TraesCS4B01G032600 chr4A 90.749 227 10 6 6375 6592 586861024 586861248 6.470000e-75 292.0
30 TraesCS4B01G032600 chr4A 94.681 188 9 1 200 387 714826029 714826215 2.330000e-74 291.0
31 TraesCS4B01G032600 chr4A 90.503 179 17 0 5985 6163 457239926 457240104 3.070000e-58 237.0
32 TraesCS4B01G032600 chr4A 89.944 179 18 0 5985 6163 588620449 588620627 1.430000e-56 231.0
33 TraesCS4B01G032600 chr4A 87.582 153 18 1 49 200 457234706 457234858 6.790000e-40 176.0
34 TraesCS4B01G032600 chr4A 94.681 94 5 0 6375 6468 586916844 586916751 5.330000e-31 147.0
35 TraesCS4B01G032600 chr3B 95.483 4339 131 16 1784 6097 454190563 454186265 0.000000e+00 6866.0
36 TraesCS4B01G032600 chr3B 98.370 3312 40 6 2755 6064 454486799 454483500 0.000000e+00 5805.0
37 TraesCS4B01G032600 chr3B 93.462 3273 126 28 381 3580 454374824 454371567 0.000000e+00 4778.0
38 TraesCS4B01G032600 chr3B 96.960 2730 48 4 2787 5515 453994707 453992012 0.000000e+00 4549.0
39 TraesCS4B01G032600 chr3B 95.417 2531 70 11 3580 6097 454367385 454364888 0.000000e+00 3989.0
40 TraesCS4B01G032600 chr3B 92.202 2629 121 32 381 2935 453997308 453994690 0.000000e+00 3642.0
41 TraesCS4B01G032600 chr3B 96.186 2124 48 14 584 2678 454488943 454486824 0.000000e+00 3443.0
42 TraesCS4B01G032600 chr3B 90.853 1465 64 24 381 1783 454204224 454202768 0.000000e+00 1899.0
43 TraesCS4B01G032600 chr3B 96.216 555 12 3 6046 6592 454482959 454482406 0.000000e+00 900.0
44 TraesCS4B01G032600 chr3B 94.505 455 18 6 387 839 454375506 454375057 0.000000e+00 695.0
45 TraesCS4B01G032600 chr3B 95.302 149 7 0 52 200 454489419 454489271 3.070000e-58 237.0
46 TraesCS4B01G032600 chr3B 92.958 142 10 0 59 200 453997561 453997420 2.410000e-49 207.0
47 TraesCS4B01G032600 chr3B 92.254 142 11 0 59 200 454204477 454204336 1.120000e-47 202.0
48 TraesCS4B01G032600 chr3B 93.023 86 2 1 6259 6340 454482836 454482751 8.980000e-24 122.0
49 TraesCS4B01G032600 chr3B 86.275 102 14 0 6422 6523 454482955 454482854 1.940000e-20 111.0
50 TraesCS4B01G032600 chr3B 97.500 40 1 0 1 40 454610532 454610493 1.190000e-07 69.4
51 TraesCS4B01G032600 chrUn 99.524 1682 8 0 2262 3943 379573553 379575234 0.000000e+00 3062.0
52 TraesCS4B01G032600 chrUn 94.149 188 10 1 200 387 318162542 318162728 1.080000e-72 285.0
53 TraesCS4B01G032600 chrUn 94.149 188 10 1 200 387 318169510 318169696 1.080000e-72 285.0
54 TraesCS4B01G032600 chrUn 94.149 188 10 1 200 387 330513564 330513750 1.080000e-72 285.0
55 TraesCS4B01G032600 chr6D 86.889 1861 149 41 1976 3777 458140652 458142476 0.000000e+00 1997.0
56 TraesCS4B01G032600 chr6D 94.180 189 10 1 200 388 373052151 373051964 3.010000e-73 287.0
57 TraesCS4B01G032600 chr5D 94.681 188 9 1 200 387 67572181 67572367 2.330000e-74 291.0
58 TraesCS4B01G032600 chr5D 94.149 188 10 1 200 387 420996210 420996396 1.080000e-72 285.0
59 TraesCS4B01G032600 chr5D 94.149 188 10 1 200 387 446038171 446037985 1.080000e-72 285.0
60 TraesCS4B01G032600 chr5D 83.846 130 21 0 58 187 209625237 209625108 2.500000e-24 124.0
61 TraesCS4B01G032600 chr1B 93.264 193 11 2 200 391 544791336 544791527 3.890000e-72 283.0
62 TraesCS4B01G032600 chr1B 86.029 136 19 0 52 187 416912409 416912274 5.330000e-31 147.0
63 TraesCS4B01G032600 chr6B 84.252 127 20 0 70 196 704687385 704687511 2.500000e-24 124.0
64 TraesCS4B01G032600 chr6B 85.470 117 12 4 298 412 590562668 590562555 4.180000e-22 117.0
65 TraesCS4B01G032600 chr2A 84.553 123 19 0 67 189 196361802 196361680 8.980000e-24 122.0
66 TraesCS4B01G032600 chr7D 82.836 134 23 0 64 197 137992722 137992589 3.230000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G032600 chr4B 24397449 24404040 6591 False 6148.000000 12174 96.511500 1 6592 2 chr4B.!!$F1 6591
1 TraesCS4B01G032600 chr4B 24538082 24544911 6829 False 2684.750000 9204 96.032500 387 6341 4 chr4B.!!$F2 5954
2 TraesCS4B01G032600 chr4D 13743668 13749907 6239 False 10595.000000 10595 97.412000 387 6592 1 chr4D.!!$F2 6205
3 TraesCS4B01G032600 chr4D 13927895 13933642 5747 False 9720.000000 9720 97.312000 387 6094 1 chr4D.!!$F3 5707
4 TraesCS4B01G032600 chr4D 13838420 13843171 4751 False 2646.666667 6390 95.392667 387 6592 3 chr4D.!!$F4 6205
5 TraesCS4B01G032600 chr4A 588615150 588620788 5638 False 2374.750000 8482 92.781500 836 6589 4 chr4A.!!$F6 5753
6 TraesCS4B01G032600 chr4A 574154724 574159473 4749 True 2109.000000 3077 90.027667 982 6592 3 chr4A.!!$R1 5610
7 TraesCS4B01G032600 chr4A 457234706 457240270 5564 False 1094.428571 3129 90.249571 49 6592 7 chr4A.!!$F4 6543
8 TraesCS4B01G032600 chr4A 586858590 586861248 2658 False 1077.666667 2549 90.230000 4151 6592 3 chr4A.!!$F5 2441
9 TraesCS4B01G032600 chr4A 586916751 586919277 2526 True 1024.333333 2534 91.499333 4154 6468 3 chr4A.!!$R2 2314
10 TraesCS4B01G032600 chr3B 454186265 454190563 4298 True 6866.000000 6866 95.483000 1784 6097 1 chr3B.!!$R1 4313
11 TraesCS4B01G032600 chr3B 454364888 454367385 2497 True 3989.000000 3989 95.417000 3580 6097 1 chr3B.!!$R2 2517
12 TraesCS4B01G032600 chr3B 453992012 453997561 5549 True 2799.333333 4549 94.040000 59 5515 3 chr3B.!!$R4 5456
13 TraesCS4B01G032600 chr3B 454371567 454375506 3939 True 2736.500000 4778 93.983500 381 3580 2 chr3B.!!$R6 3199
14 TraesCS4B01G032600 chr3B 454482406 454489419 7013 True 1769.666667 5805 94.228667 52 6592 6 chr3B.!!$R7 6540
15 TraesCS4B01G032600 chr3B 454202768 454204477 1709 True 1050.500000 1899 91.553500 59 1783 2 chr3B.!!$R5 1724
16 TraesCS4B01G032600 chrUn 379573553 379575234 1681 False 3062.000000 3062 99.524000 2262 3943 1 chrUn.!!$F4 1681
17 TraesCS4B01G032600 chr6D 458140652 458142476 1824 False 1997.000000 1997 86.889000 1976 3777 1 chr6D.!!$F1 1801

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
352 353 0.033503 CCTGGTGGGTTGGGAATACC 60.034 60.000 0.00 0.0 40.81 2.73 F
1974 2497 1.008938 AGTAGCAACTGGGAGGAGGAT 59.991 52.381 0.00 0.0 33.57 3.24 F
2292 2830 0.182061 TCTCCAAGCATCTGGGCATC 59.818 55.000 0.22 0.0 37.06 3.91 F
2678 3226 8.462016 GTTTCTGTCCATAAATTCAGCACTTAT 58.538 33.333 0.00 0.0 0.00 1.73 F
4033 4728 1.598130 GGACTTCTGTGCTGCCGTT 60.598 57.895 0.00 0.0 0.00 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2198 2736 4.857509 AAATTAGCCACGCCTTTTACAA 57.142 36.364 0.00 0.0 0.00 2.41 R
3645 4340 2.225066 ACGAGGACCTGAGAAGGTAGTT 60.225 50.000 0.00 0.0 43.24 2.24 R
3729 4424 3.244044 GCTAGCTAGCTCTGGCATTTAGT 60.244 47.826 33.71 0.0 45.62 2.24 R
5085 7596 6.402550 CCATAGTCTAACATTTGTGACAGCAC 60.403 42.308 4.59 0.0 45.35 4.40 R
5957 8661 1.271054 GCGACCATGGAGCCAGATAAT 60.271 52.381 21.47 0.0 0.00 1.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.544726 GAAACCCTCGAAGCTGGTG 58.455 57.895 0.00 0.00 31.72 4.17
30 31 0.250338 GAAACCCTCGAAGCTGGTGT 60.250 55.000 0.00 0.00 31.72 4.16
32 33 0.250338 AACCCTCGAAGCTGGTGTTC 60.250 55.000 0.00 0.00 31.72 3.18
34 35 1.738099 CCTCGAAGCTGGTGTTCGG 60.738 63.158 5.01 0.00 45.48 4.30
35 36 2.357034 TCGAAGCTGGTGTTCGGC 60.357 61.111 5.01 0.00 45.48 5.54
42 43 1.418373 GCTGGTGTTCGGCAAAATTC 58.582 50.000 0.00 0.00 46.73 2.17
44 45 2.922335 GCTGGTGTTCGGCAAAATTCTC 60.922 50.000 0.00 0.00 46.73 2.87
45 46 1.611491 TGGTGTTCGGCAAAATTCTCC 59.389 47.619 0.00 0.00 0.00 3.71
46 47 1.401018 GGTGTTCGGCAAAATTCTCCG 60.401 52.381 6.64 6.64 44.16 4.63
47 48 1.265905 GTGTTCGGCAAAATTCTCCGT 59.734 47.619 11.18 0.00 43.35 4.69
49 50 1.135774 GTTCGGCAAAATTCTCCGTCC 60.136 52.381 11.18 2.64 43.35 4.79
50 51 1.017177 TCGGCAAAATTCTCCGTCCG 61.017 55.000 11.18 0.00 43.35 4.79
54 55 1.128692 GCAAAATTCTCCGTCCGTGAG 59.871 52.381 0.00 0.00 0.00 3.51
146 147 9.855021 CACACTTTAAAATTAGGGGTAAATCTG 57.145 33.333 0.00 0.00 0.00 2.90
157 158 4.794067 AGGGGTAAATCTGAATAGTGGGTT 59.206 41.667 0.00 0.00 0.00 4.11
158 159 5.104067 AGGGGTAAATCTGAATAGTGGGTTC 60.104 44.000 0.00 0.00 0.00 3.62
160 161 5.395990 GGGTAAATCTGAATAGTGGGTTCGA 60.396 44.000 0.00 0.00 0.00 3.71
161 162 5.753921 GGTAAATCTGAATAGTGGGTTCGAG 59.246 44.000 0.00 0.00 0.00 4.04
164 165 6.540438 AATCTGAATAGTGGGTTCGAGTTA 57.460 37.500 0.00 0.00 0.00 2.24
165 166 5.578005 TCTGAATAGTGGGTTCGAGTTAG 57.422 43.478 0.00 0.00 0.00 2.34
166 167 4.401519 TCTGAATAGTGGGTTCGAGTTAGG 59.598 45.833 0.00 0.00 0.00 2.69
167 168 3.449737 TGAATAGTGGGTTCGAGTTAGGG 59.550 47.826 0.00 0.00 0.00 3.53
168 169 1.856629 TAGTGGGTTCGAGTTAGGGG 58.143 55.000 0.00 0.00 0.00 4.79
169 170 1.078637 GTGGGTTCGAGTTAGGGGC 60.079 63.158 0.00 0.00 0.00 5.80
171 172 1.221021 GGGTTCGAGTTAGGGGCTG 59.779 63.158 0.00 0.00 0.00 4.85
173 174 0.611714 GGTTCGAGTTAGGGGCTGAA 59.388 55.000 0.00 0.00 0.00 3.02
174 175 1.002773 GGTTCGAGTTAGGGGCTGAAA 59.997 52.381 0.00 0.00 0.00 2.69
177 178 1.906574 TCGAGTTAGGGGCTGAAATGT 59.093 47.619 0.00 0.00 0.00 2.71
179 180 3.709653 TCGAGTTAGGGGCTGAAATGTAT 59.290 43.478 0.00 0.00 0.00 2.29
180 181 4.897076 TCGAGTTAGGGGCTGAAATGTATA 59.103 41.667 0.00 0.00 0.00 1.47
182 183 5.639506 CGAGTTAGGGGCTGAAATGTATATG 59.360 44.000 0.00 0.00 0.00 1.78
185 186 4.373156 AGGGGCTGAAATGTATATGACC 57.627 45.455 0.00 0.00 0.00 4.02
186 187 3.074538 AGGGGCTGAAATGTATATGACCC 59.925 47.826 0.00 0.00 34.66 4.46
187 188 3.074538 GGGGCTGAAATGTATATGACCCT 59.925 47.826 0.00 0.00 35.09 4.34
188 189 4.447762 GGGGCTGAAATGTATATGACCCTT 60.448 45.833 0.00 0.00 35.09 3.95
189 190 4.520492 GGGCTGAAATGTATATGACCCTTG 59.480 45.833 0.00 0.00 31.84 3.61
190 191 5.133221 GGCTGAAATGTATATGACCCTTGT 58.867 41.667 0.00 0.00 0.00 3.16
191 192 5.594317 GGCTGAAATGTATATGACCCTTGTT 59.406 40.000 0.00 0.00 0.00 2.83
192 193 6.096846 GGCTGAAATGTATATGACCCTTGTTT 59.903 38.462 0.00 0.00 0.00 2.83
193 194 7.363793 GGCTGAAATGTATATGACCCTTGTTTT 60.364 37.037 0.00 0.00 0.00 2.43
194 195 8.034804 GCTGAAATGTATATGACCCTTGTTTTT 58.965 33.333 0.00 0.00 0.00 1.94
201 202 9.688091 TGTATATGACCCTTGTTTTTATAAGCA 57.312 29.630 0.00 0.00 0.00 3.91
206 207 8.815565 TGACCCTTGTTTTTATAAGCATATCA 57.184 30.769 0.00 0.00 0.00 2.15
207 208 9.249053 TGACCCTTGTTTTTATAAGCATATCAA 57.751 29.630 0.00 0.00 0.00 2.57
208 209 9.516314 GACCCTTGTTTTTATAAGCATATCAAC 57.484 33.333 0.00 0.00 0.00 3.18
222 223 8.492673 AAGCATATCAACTTGAGATTTACGAA 57.507 30.769 0.00 0.00 0.00 3.85
223 224 8.136057 AGCATATCAACTTGAGATTTACGAAG 57.864 34.615 0.00 0.00 0.00 3.79
225 226 8.058915 GCATATCAACTTGAGATTTACGAAGTC 58.941 37.037 0.00 0.00 43.93 3.01
226 227 9.087424 CATATCAACTTGAGATTTACGAAGTCA 57.913 33.333 0.00 0.00 43.93 3.41
227 228 6.764877 TCAACTTGAGATTTACGAAGTCAC 57.235 37.500 0.00 0.00 43.93 3.67
228 229 5.694910 TCAACTTGAGATTTACGAAGTCACC 59.305 40.000 0.00 0.00 43.93 4.02
229 230 4.235360 ACTTGAGATTTACGAAGTCACCG 58.765 43.478 0.00 0.00 43.93 4.94
230 231 3.928727 TGAGATTTACGAAGTCACCGT 57.071 42.857 0.00 0.00 43.93 4.83
232 233 4.978186 TGAGATTTACGAAGTCACCGTAG 58.022 43.478 0.00 0.00 43.93 3.51
244 245 2.737180 CCGTAGGCGCCTCATCAT 59.263 61.111 36.73 11.27 46.14 2.45
245 246 1.373497 CCGTAGGCGCCTCATCATC 60.373 63.158 36.73 15.88 46.14 2.92
248 249 0.664767 GTAGGCGCCTCATCATCGAC 60.665 60.000 36.73 19.71 0.00 4.20
249 250 2.130073 TAGGCGCCTCATCATCGACG 62.130 60.000 36.73 0.00 36.17 5.12
250 251 3.032609 GCGCCTCATCATCGACGG 61.033 66.667 0.00 0.00 0.00 4.79
251 252 2.355126 CGCCTCATCATCGACGGG 60.355 66.667 0.00 0.00 0.00 5.28
253 254 1.441729 GCCTCATCATCGACGGGAA 59.558 57.895 0.00 0.00 0.00 3.97
254 255 0.876342 GCCTCATCATCGACGGGAAC 60.876 60.000 0.00 0.00 0.00 3.62
267 268 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
268 269 3.277962 GGAACGTCTCCTCCCACTA 57.722 57.895 8.87 0.00 41.61 2.74
271 272 2.500504 GGAACGTCTCCTCCCACTAAAT 59.499 50.000 8.87 0.00 41.61 1.40
272 273 3.522553 GAACGTCTCCTCCCACTAAATG 58.477 50.000 0.00 0.00 0.00 2.32
273 274 1.207329 ACGTCTCCTCCCACTAAATGC 59.793 52.381 0.00 0.00 0.00 3.56
274 275 1.802880 CGTCTCCTCCCACTAAATGCG 60.803 57.143 0.00 0.00 0.00 4.73
275 276 0.178068 TCTCCTCCCACTAAATGCGC 59.822 55.000 0.00 0.00 0.00 6.09
276 277 0.107703 CTCCTCCCACTAAATGCGCA 60.108 55.000 14.96 14.96 0.00 6.09
278 279 0.947244 CCTCCCACTAAATGCGCATC 59.053 55.000 25.53 0.00 0.00 3.91
279 280 0.583438 CTCCCACTAAATGCGCATCG 59.417 55.000 25.53 17.09 0.00 3.84
290 291 2.588877 CGCATCGCCGGAAATCCT 60.589 61.111 5.05 0.00 0.00 3.24
291 292 2.885676 CGCATCGCCGGAAATCCTG 61.886 63.158 5.05 0.00 0.00 3.86
292 293 3.025619 CATCGCCGGAAATCCTGC 58.974 61.111 5.05 5.84 42.00 4.85
295 296 0.679640 ATCGCCGGAAATCCTGCAAA 60.680 50.000 5.05 4.04 45.11 3.68
297 298 1.021202 CGCCGGAAATCCTGCAAATA 58.979 50.000 5.05 0.00 45.11 1.40
298 299 1.403679 CGCCGGAAATCCTGCAAATAA 59.596 47.619 5.05 0.00 45.11 1.40
299 300 2.159310 CGCCGGAAATCCTGCAAATAAA 60.159 45.455 5.05 0.00 45.11 1.40
301 302 4.441792 GCCGGAAATCCTGCAAATAAATT 58.558 39.130 5.05 0.00 44.38 1.82
302 303 4.507756 GCCGGAAATCCTGCAAATAAATTC 59.492 41.667 5.05 0.00 44.38 2.17
303 304 5.659463 CCGGAAATCCTGCAAATAAATTCA 58.341 37.500 0.00 0.00 0.00 2.57
304 305 5.750067 CCGGAAATCCTGCAAATAAATTCAG 59.250 40.000 0.00 0.00 0.00 3.02
305 306 6.405731 CCGGAAATCCTGCAAATAAATTCAGA 60.406 38.462 0.00 0.00 0.00 3.27
306 307 7.035004 CGGAAATCCTGCAAATAAATTCAGAA 58.965 34.615 0.00 0.00 0.00 3.02
307 308 7.545265 CGGAAATCCTGCAAATAAATTCAGAAA 59.455 33.333 0.00 0.00 0.00 2.52
314 315 9.925268 CCTGCAAATAAATTCAGAAATAAATGC 57.075 29.630 0.00 0.99 0.00 3.56
321 322 6.973229 AATTCAGAAATAAATGCAAGCACC 57.027 33.333 0.00 0.00 0.00 5.01
322 323 5.465532 TTCAGAAATAAATGCAAGCACCA 57.534 34.783 0.00 0.00 0.00 4.17
323 324 5.063180 TCAGAAATAAATGCAAGCACCAG 57.937 39.130 0.00 0.00 0.00 4.00
324 325 4.082081 TCAGAAATAAATGCAAGCACCAGG 60.082 41.667 0.00 0.00 0.00 4.45
325 326 4.082081 CAGAAATAAATGCAAGCACCAGGA 60.082 41.667 0.00 0.00 0.00 3.86
327 328 5.188359 AGAAATAAATGCAAGCACCAGGATT 59.812 36.000 0.00 0.00 0.00 3.01
328 329 5.425196 AATAAATGCAAGCACCAGGATTT 57.575 34.783 0.00 0.00 38.88 2.17
329 330 2.754946 AATGCAAGCACCAGGATTTG 57.245 45.000 0.00 0.00 0.00 2.32
331 332 1.702182 TGCAAGCACCAGGATTTGAA 58.298 45.000 0.00 0.00 0.00 2.69
332 333 1.340889 TGCAAGCACCAGGATTTGAAC 59.659 47.619 0.00 0.00 0.00 3.18
333 334 1.337167 GCAAGCACCAGGATTTGAACC 60.337 52.381 0.00 0.00 0.00 3.62
334 335 1.273327 CAAGCACCAGGATTTGAACCC 59.727 52.381 0.00 0.00 0.00 4.11
335 336 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
340 341 1.549203 CAGGATTTGAACCCTGGTGG 58.451 55.000 0.00 0.00 44.68 4.61
351 352 3.588742 CCTGGTGGGTTGGGAATAC 57.411 57.895 0.00 0.00 0.00 1.89
352 353 0.033503 CCTGGTGGGTTGGGAATACC 60.034 60.000 0.00 0.00 40.81 2.73
366 367 4.403585 GGAATACCACAGTCCCTCTAAC 57.596 50.000 0.00 0.00 35.23 2.34
367 368 3.134262 GGAATACCACAGTCCCTCTAACC 59.866 52.174 0.00 0.00 35.23 2.85
368 369 3.484953 ATACCACAGTCCCTCTAACCA 57.515 47.619 0.00 0.00 0.00 3.67
371 372 1.486726 CCACAGTCCCTCTAACCATCC 59.513 57.143 0.00 0.00 0.00 3.51
374 375 2.572104 ACAGTCCCTCTAACCATCCAAC 59.428 50.000 0.00 0.00 0.00 3.77
375 376 2.092914 CAGTCCCTCTAACCATCCAACC 60.093 54.545 0.00 0.00 0.00 3.77
376 377 1.913419 GTCCCTCTAACCATCCAACCA 59.087 52.381 0.00 0.00 0.00 3.67
377 378 1.913419 TCCCTCTAACCATCCAACCAC 59.087 52.381 0.00 0.00 0.00 4.16
378 379 1.633432 CCCTCTAACCATCCAACCACA 59.367 52.381 0.00 0.00 0.00 4.17
379 380 2.356125 CCCTCTAACCATCCAACCACAG 60.356 54.545 0.00 0.00 0.00 3.66
381 382 2.305927 CTCTAACCATCCAACCACAGGT 59.694 50.000 0.00 0.00 37.65 4.00
397 721 4.383552 CCACAGGTTGGTTTCCAATTTTGA 60.384 41.667 4.51 0.00 45.80 2.69
847 1337 1.464608 GCAACAATGAGCGCTACAGAA 59.535 47.619 11.50 0.00 0.00 3.02
874 1364 2.046892 CCCAGTCGTTGCCTCCTG 60.047 66.667 0.00 0.00 0.00 3.86
882 1373 1.723608 CGTTGCCTCCTGTTTGTGCA 61.724 55.000 0.00 0.00 0.00 4.57
917 1408 6.086502 CCGAGATAAAATATCGACTCGTTCAC 59.913 42.308 14.22 0.00 46.06 3.18
1974 2497 1.008938 AGTAGCAACTGGGAGGAGGAT 59.991 52.381 0.00 0.00 33.57 3.24
2198 2736 4.225942 TGCTCTTGATATGAGGAACAAGGT 59.774 41.667 0.00 0.00 39.74 3.50
2292 2830 0.182061 TCTCCAAGCATCTGGGCATC 59.818 55.000 0.22 0.00 37.06 3.91
2678 3226 8.462016 GTTTCTGTCCATAAATTCAGCACTTAT 58.538 33.333 0.00 0.00 0.00 1.73
3645 4340 9.676861 CCATATCAGAAGCATATTTAATCTCCA 57.323 33.333 0.00 0.00 0.00 3.86
3729 4424 2.161855 CCATTTGCTAGCCAGACACAA 58.838 47.619 13.29 0.00 0.00 3.33
4033 4728 1.598130 GGACTTCTGTGCTGCCGTT 60.598 57.895 0.00 0.00 0.00 4.44
5238 7749 9.674824 GAATTGATGGCTAAAGATAGAAATGTG 57.325 33.333 0.00 0.00 0.00 3.21
5791 8313 5.302360 TGTATCGACTATATTTGTTGGCCC 58.698 41.667 0.00 0.00 0.00 5.80
6357 9848 4.082026 GCATACATTTGGACCTTTGAAGCT 60.082 41.667 0.00 0.00 0.00 3.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.792006 CGAGGGTTTCGCTTAGTGTT 58.208 50.000 0.00 0.00 43.22 3.32
2 3 3.509388 CGAGGGTTTCGCTTAGTGT 57.491 52.632 0.00 0.00 43.22 3.55
17 18 2.383527 GCCGAACACCAGCTTCGAG 61.384 63.158 6.33 0.00 42.57 4.04
20 21 0.383949 TTTTGCCGAACACCAGCTTC 59.616 50.000 0.00 0.00 0.00 3.86
22 23 1.000274 GAATTTTGCCGAACACCAGCT 60.000 47.619 0.00 0.00 0.00 4.24
23 24 1.000274 AGAATTTTGCCGAACACCAGC 60.000 47.619 0.00 0.00 0.00 4.85
24 25 2.351738 GGAGAATTTTGCCGAACACCAG 60.352 50.000 0.00 0.00 0.00 4.00
25 26 1.611491 GGAGAATTTTGCCGAACACCA 59.389 47.619 0.00 0.00 0.00 4.17
34 35 1.128692 CTCACGGACGGAGAATTTTGC 59.871 52.381 0.00 0.00 34.24 3.68
35 36 1.128692 GCTCACGGACGGAGAATTTTG 59.871 52.381 12.27 0.00 34.24 2.44
36 37 1.270625 TGCTCACGGACGGAGAATTTT 60.271 47.619 12.27 0.00 34.24 1.82
37 38 0.320374 TGCTCACGGACGGAGAATTT 59.680 50.000 12.27 0.00 34.24 1.82
38 39 0.108615 CTGCTCACGGACGGAGAATT 60.109 55.000 12.27 0.00 34.24 2.17
39 40 0.965866 TCTGCTCACGGACGGAGAAT 60.966 55.000 12.27 0.00 34.24 2.40
40 41 1.602605 TCTGCTCACGGACGGAGAA 60.603 57.895 12.27 3.49 34.24 2.87
42 43 2.179517 GTCTGCTCACGGACGGAG 59.820 66.667 0.00 1.61 42.17 4.63
46 47 1.654105 CATTTACGTCTGCTCACGGAC 59.346 52.381 11.84 0.00 46.94 4.79
47 48 1.542472 TCATTTACGTCTGCTCACGGA 59.458 47.619 11.84 1.17 44.41 4.69
49 50 2.090658 GTGTCATTTACGTCTGCTCACG 59.909 50.000 0.00 6.48 45.65 4.35
50 51 3.057019 TGTGTCATTTACGTCTGCTCAC 58.943 45.455 0.00 3.13 0.00 3.51
54 55 3.123621 CCTTCTGTGTCATTTACGTCTGC 59.876 47.826 0.00 0.00 0.00 4.26
146 147 3.181468 CCCCTAACTCGAACCCACTATTC 60.181 52.174 0.00 0.00 0.00 1.75
148 149 2.395619 CCCCTAACTCGAACCCACTAT 58.604 52.381 0.00 0.00 0.00 2.12
150 151 1.551019 GCCCCTAACTCGAACCCACT 61.551 60.000 0.00 0.00 0.00 4.00
151 152 1.078637 GCCCCTAACTCGAACCCAC 60.079 63.158 0.00 0.00 0.00 4.61
157 158 1.906574 ACATTTCAGCCCCTAACTCGA 59.093 47.619 0.00 0.00 0.00 4.04
158 159 2.403252 ACATTTCAGCCCCTAACTCG 57.597 50.000 0.00 0.00 0.00 4.18
160 161 6.465894 GGTCATATACATTTCAGCCCCTAACT 60.466 42.308 0.00 0.00 0.00 2.24
161 162 5.705905 GGTCATATACATTTCAGCCCCTAAC 59.294 44.000 0.00 0.00 0.00 2.34
164 165 3.074538 GGGTCATATACATTTCAGCCCCT 59.925 47.826 0.00 0.00 0.00 4.79
165 166 3.074538 AGGGTCATATACATTTCAGCCCC 59.925 47.826 0.00 0.00 34.34 5.80
166 167 4.373156 AGGGTCATATACATTTCAGCCC 57.627 45.455 0.00 0.00 0.00 5.19
167 168 5.133221 ACAAGGGTCATATACATTTCAGCC 58.867 41.667 0.00 0.00 0.00 4.85
168 169 6.699575 AACAAGGGTCATATACATTTCAGC 57.300 37.500 0.00 0.00 0.00 4.26
180 181 9.420118 TGATATGCTTATAAAAACAAGGGTCAT 57.580 29.630 0.00 0.00 0.00 3.06
182 183 9.516314 GTTGATATGCTTATAAAAACAAGGGTC 57.484 33.333 0.00 0.00 0.00 4.46
195 196 9.764363 TCGTAAATCTCAAGTTGATATGCTTAT 57.236 29.630 5.91 0.00 0.00 1.73
197 198 8.492673 TTCGTAAATCTCAAGTTGATATGCTT 57.507 30.769 5.91 0.31 0.00 3.91
198 199 7.766278 ACTTCGTAAATCTCAAGTTGATATGCT 59.234 33.333 5.91 0.00 0.00 3.79
199 200 7.910304 ACTTCGTAAATCTCAAGTTGATATGC 58.090 34.615 5.91 0.00 0.00 3.14
200 201 9.087424 TGACTTCGTAAATCTCAAGTTGATATG 57.913 33.333 5.91 1.84 0.00 1.78
201 202 9.088512 GTGACTTCGTAAATCTCAAGTTGATAT 57.911 33.333 5.91 1.62 0.00 1.63
202 203 7.544566 GGTGACTTCGTAAATCTCAAGTTGATA 59.455 37.037 5.91 0.00 0.00 2.15
205 206 5.388475 CGGTGACTTCGTAAATCTCAAGTTG 60.388 44.000 0.00 0.00 0.00 3.16
206 207 4.684703 CGGTGACTTCGTAAATCTCAAGTT 59.315 41.667 0.00 0.00 0.00 2.66
207 208 4.235360 CGGTGACTTCGTAAATCTCAAGT 58.765 43.478 0.00 0.00 0.00 3.16
208 209 4.235360 ACGGTGACTTCGTAAATCTCAAG 58.765 43.478 0.00 0.00 39.22 3.02
210 211 3.928727 ACGGTGACTTCGTAAATCTCA 57.071 42.857 0.00 0.00 39.22 3.27
211 212 4.349501 CCTACGGTGACTTCGTAAATCTC 58.650 47.826 0.00 0.00 41.62 2.75
212 213 3.428589 GCCTACGGTGACTTCGTAAATCT 60.429 47.826 0.00 0.00 41.62 2.40
213 214 2.856557 GCCTACGGTGACTTCGTAAATC 59.143 50.000 0.00 0.00 41.62 2.17
214 215 2.733227 CGCCTACGGTGACTTCGTAAAT 60.733 50.000 0.00 0.00 41.62 1.40
216 217 0.168788 CGCCTACGGTGACTTCGTAA 59.831 55.000 0.00 0.00 41.62 3.18
217 218 1.796151 CGCCTACGGTGACTTCGTA 59.204 57.895 0.00 0.00 41.38 3.43
219 220 2.879462 GCGCCTACGGTGACTTCG 60.879 66.667 0.00 0.00 40.57 3.79
220 221 2.508663 GGCGCCTACGGTGACTTC 60.509 66.667 22.15 0.00 38.38 3.01
223 224 2.955751 GATGAGGCGCCTACGGTGAC 62.956 65.000 32.97 16.10 42.50 3.67
224 225 2.758327 ATGAGGCGCCTACGGTGA 60.758 61.111 32.97 9.65 40.57 4.02
225 226 2.279517 GATGAGGCGCCTACGGTG 60.280 66.667 32.97 0.00 40.57 4.94
226 227 2.088674 GATGATGAGGCGCCTACGGT 62.089 60.000 32.97 15.82 40.57 4.83
227 228 1.373497 GATGATGAGGCGCCTACGG 60.373 63.158 32.97 0.00 40.57 4.02
228 229 1.730902 CGATGATGAGGCGCCTACG 60.731 63.158 32.97 22.32 44.07 3.51
229 230 0.664767 GTCGATGATGAGGCGCCTAC 60.665 60.000 32.97 23.37 0.00 3.18
230 231 1.660355 GTCGATGATGAGGCGCCTA 59.340 57.895 32.97 15.35 0.00 3.93
232 233 3.032609 CGTCGATGATGAGGCGCC 61.033 66.667 21.89 21.89 0.00 6.53
233 234 3.032609 CCGTCGATGATGAGGCGC 61.033 66.667 6.11 0.00 33.71 6.53
234 235 2.349969 TTCCCGTCGATGATGAGGCG 62.350 60.000 6.11 0.00 34.97 5.52
236 237 0.595053 CGTTCCCGTCGATGATGAGG 60.595 60.000 6.11 0.00 0.00 3.86
237 238 0.100682 ACGTTCCCGTCGATGATGAG 59.899 55.000 6.11 0.00 46.28 2.90
239 240 4.806571 ACGTTCCCGTCGATGATG 57.193 55.556 6.11 0.00 46.28 3.07
251 252 3.522553 CATTTAGTGGGAGGAGACGTTC 58.477 50.000 0.00 0.00 0.00 3.95
253 254 1.207329 GCATTTAGTGGGAGGAGACGT 59.793 52.381 0.00 0.00 0.00 4.34
254 255 1.802880 CGCATTTAGTGGGAGGAGACG 60.803 57.143 0.00 0.00 43.02 4.18
255 256 1.941325 CGCATTTAGTGGGAGGAGAC 58.059 55.000 0.00 0.00 43.02 3.36
257 258 0.107703 TGCGCATTTAGTGGGAGGAG 60.108 55.000 5.66 0.00 43.02 3.69
259 260 0.947244 GATGCGCATTTAGTGGGAGG 59.053 55.000 26.12 0.00 43.02 4.30
260 261 0.583438 CGATGCGCATTTAGTGGGAG 59.417 55.000 26.12 4.12 43.02 4.30
261 262 2.689083 CGATGCGCATTTAGTGGGA 58.311 52.632 26.12 0.00 43.02 4.37
273 274 2.588877 AGGATTTCCGGCGATGCG 60.589 61.111 9.30 0.00 42.08 4.73
274 275 3.025619 CAGGATTTCCGGCGATGC 58.974 61.111 9.30 0.00 42.08 3.91
275 276 3.025619 GCAGGATTTCCGGCGATG 58.974 61.111 9.30 0.00 46.44 3.84
280 281 5.659463 TGAATTTATTTGCAGGATTTCCGG 58.341 37.500 0.00 0.00 42.08 5.14
281 282 6.563422 TCTGAATTTATTTGCAGGATTTCCG 58.437 36.000 0.00 0.00 42.08 4.30
282 283 8.776376 TTTCTGAATTTATTTGCAGGATTTCC 57.224 30.769 0.00 0.00 0.00 3.13
288 289 9.925268 GCATTTATTTCTGAATTTATTTGCAGG 57.075 29.630 0.00 0.00 0.00 4.85
295 296 9.101655 GGTGCTTGCATTTATTTCTGAATTTAT 57.898 29.630 0.00 0.00 0.00 1.40
297 298 6.935771 TGGTGCTTGCATTTATTTCTGAATTT 59.064 30.769 0.00 0.00 0.00 1.82
298 299 6.465948 TGGTGCTTGCATTTATTTCTGAATT 58.534 32.000 0.00 0.00 0.00 2.17
299 300 6.040209 TGGTGCTTGCATTTATTTCTGAAT 57.960 33.333 0.00 0.00 0.00 2.57
301 302 4.082081 CCTGGTGCTTGCATTTATTTCTGA 60.082 41.667 0.00 0.00 0.00 3.27
302 303 4.082081 TCCTGGTGCTTGCATTTATTTCTG 60.082 41.667 0.00 0.00 0.00 3.02
303 304 4.088634 TCCTGGTGCTTGCATTTATTTCT 58.911 39.130 0.00 0.00 0.00 2.52
304 305 4.454728 TCCTGGTGCTTGCATTTATTTC 57.545 40.909 0.00 0.00 0.00 2.17
305 306 5.425196 AATCCTGGTGCTTGCATTTATTT 57.575 34.783 0.00 0.00 0.00 1.40
306 307 5.046448 TCAAATCCTGGTGCTTGCATTTATT 60.046 36.000 0.00 0.00 0.00 1.40
307 308 4.467082 TCAAATCCTGGTGCTTGCATTTAT 59.533 37.500 0.00 0.00 0.00 1.40
309 310 2.633967 TCAAATCCTGGTGCTTGCATTT 59.366 40.909 0.00 0.00 0.00 2.32
311 312 1.927487 TCAAATCCTGGTGCTTGCAT 58.073 45.000 0.00 0.00 0.00 3.96
313 314 1.337167 GGTTCAAATCCTGGTGCTTGC 60.337 52.381 0.00 0.00 0.00 4.01
314 315 1.273327 GGGTTCAAATCCTGGTGCTTG 59.727 52.381 0.00 0.00 0.00 4.01
316 317 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
317 318 3.363787 AGGGTTCAAATCCTGGTGC 57.636 52.632 0.00 0.00 38.36 5.01
333 334 0.033503 GGTATTCCCAACCCACCAGG 60.034 60.000 0.00 0.00 43.78 4.45
334 335 0.701731 TGGTATTCCCAACCCACCAG 59.298 55.000 0.00 0.00 41.50 4.00
335 336 2.884412 TGGTATTCCCAACCCACCA 58.116 52.632 0.00 0.00 41.50 4.17
344 345 1.880941 AGAGGGACTGTGGTATTCCC 58.119 55.000 0.00 0.00 46.22 3.97
345 346 3.134262 GGTTAGAGGGACTGTGGTATTCC 59.866 52.174 0.00 0.00 41.55 3.01
346 347 3.773119 TGGTTAGAGGGACTGTGGTATTC 59.227 47.826 0.00 0.00 41.55 1.75
347 348 3.798515 TGGTTAGAGGGACTGTGGTATT 58.201 45.455 0.00 0.00 41.55 1.89
348 349 3.484953 TGGTTAGAGGGACTGTGGTAT 57.515 47.619 0.00 0.00 41.55 2.73
349 350 3.371965 GATGGTTAGAGGGACTGTGGTA 58.628 50.000 0.00 0.00 41.55 3.25
350 351 2.188817 GATGGTTAGAGGGACTGTGGT 58.811 52.381 0.00 0.00 41.55 4.16
351 352 1.486726 GGATGGTTAGAGGGACTGTGG 59.513 57.143 0.00 0.00 41.55 4.17
352 353 2.187958 TGGATGGTTAGAGGGACTGTG 58.812 52.381 0.00 0.00 41.55 3.66
354 355 2.092914 GGTTGGATGGTTAGAGGGACTG 60.093 54.545 0.00 0.00 41.55 3.51
356 357 1.913419 TGGTTGGATGGTTAGAGGGAC 59.087 52.381 0.00 0.00 0.00 4.46
357 358 1.913419 GTGGTTGGATGGTTAGAGGGA 59.087 52.381 0.00 0.00 0.00 4.20
358 359 1.633432 TGTGGTTGGATGGTTAGAGGG 59.367 52.381 0.00 0.00 0.00 4.30
359 360 2.356125 CCTGTGGTTGGATGGTTAGAGG 60.356 54.545 0.00 0.00 0.00 3.69
360 361 2.305927 ACCTGTGGTTGGATGGTTAGAG 59.694 50.000 0.00 0.00 27.29 2.43
361 362 2.344592 ACCTGTGGTTGGATGGTTAGA 58.655 47.619 0.00 0.00 27.29 2.10
362 363 2.879103 ACCTGTGGTTGGATGGTTAG 57.121 50.000 0.00 0.00 27.29 2.34
375 376 4.764172 TCAAAATTGGAAACCAACCTGTG 58.236 39.130 5.33 2.60 46.95 3.66
376 377 5.428184 TTCAAAATTGGAAACCAACCTGT 57.572 34.783 5.33 0.00 46.95 4.00
377 378 6.550843 GTTTTCAAAATTGGAAACCAACCTG 58.449 36.000 16.01 4.21 46.95 4.00
378 379 6.751514 GTTTTCAAAATTGGAAACCAACCT 57.248 33.333 16.01 0.00 46.95 3.50
385 386 9.377312 CTTGTAGAAGGTTTTCAAAATTGGAAA 57.623 29.630 0.00 0.00 35.70 3.13
737 1112 8.850454 TTTGAAACAAATCTAACTTTTCTCGG 57.150 30.769 0.00 0.00 0.00 4.63
874 1364 1.305930 GGGGACTCCGATGCACAAAC 61.306 60.000 0.00 0.00 0.00 2.93
2198 2736 4.857509 AAATTAGCCACGCCTTTTACAA 57.142 36.364 0.00 0.00 0.00 2.41
2292 2830 5.643777 ACGAAATTACCTGGTTGATGAGAAG 59.356 40.000 3.84 0.00 0.00 2.85
2678 3226 4.329545 GCGGTGACAGGGGAGCAA 62.330 66.667 0.00 0.00 0.00 3.91
3355 4050 5.365895 ACAACTAATATGAGGTACAGGGACC 59.634 44.000 0.00 0.00 40.08 4.46
3645 4340 2.225066 ACGAGGACCTGAGAAGGTAGTT 60.225 50.000 0.00 0.00 43.24 2.24
3729 4424 3.244044 GCTAGCTAGCTCTGGCATTTAGT 60.244 47.826 33.71 0.00 45.62 2.24
5085 7596 6.402550 CCATAGTCTAACATTTGTGACAGCAC 60.403 42.308 4.59 0.00 45.35 4.40
5238 7749 7.174946 TCAAATTCTAGATTTGTCCCAAGTCAC 59.825 37.037 18.74 0.00 39.36 3.67
5791 8313 8.157210 CTAGCATAGAACATAGTGGACACACAG 61.157 44.444 5.14 0.00 45.61 3.66
5957 8661 1.271054 GCGACCATGGAGCCAGATAAT 60.271 52.381 21.47 0.00 0.00 1.28
6275 9761 7.601508 TGACTACGAGAGATACGAGCAATAATA 59.398 37.037 0.00 0.00 34.70 0.98
6357 9848 4.011966 CAGCTCATGCCTATGTTGGATA 57.988 45.455 0.00 0.00 40.80 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.