Multiple sequence alignment - TraesCS4B01G032000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G032000 chr4B 100.000 5483 0 0 985 6467 23822988 23817506 0.000000e+00 10126.0
1 TraesCS4B01G032000 chr4B 91.667 588 43 5 5851 6434 81936360 81936945 0.000000e+00 809.0
2 TraesCS4B01G032000 chr4B 100.000 330 0 0 1 330 23823972 23823643 1.540000e-170 610.0
3 TraesCS4B01G032000 chr4A 91.473 2322 115 25 987 3296 589107727 589109977 0.000000e+00 3114.0
4 TraesCS4B01G032000 chr4A 90.274 1645 92 25 3963 5562 589110658 589112279 0.000000e+00 2089.0
5 TraesCS4B01G032000 chr4A 91.284 436 27 3 3374 3809 589110029 589110453 9.340000e-163 584.0
6 TraesCS4B01G032000 chr4A 77.039 331 36 14 1 328 589106673 589106966 3.120000e-33 154.0
7 TraesCS4B01G032000 chr4A 100.000 32 0 0 5709 5740 589112453 589112484 7.000000e-05 60.2
8 TraesCS4B01G032000 chr4A 92.105 38 3 0 5689 5726 589112403 589112440 3.000000e-03 54.7
9 TraesCS4B01G032000 chr4D 93.601 1844 87 14 1486 3299 13200547 13198705 0.000000e+00 2723.0
10 TraesCS4B01G032000 chr4D 90.006 1721 106 22 3656 5334 13198279 13196583 0.000000e+00 2165.0
11 TraesCS4B01G032000 chr4D 91.644 371 16 5 1063 1430 13200921 13200563 3.480000e-137 499.0
12 TraesCS4B01G032000 chr4D 94.286 280 16 0 3374 3653 13198656 13198377 4.630000e-116 429.0
13 TraesCS4B01G032000 chr2B 94.460 1390 49 13 1311 2675 17039818 17041204 0.000000e+00 2115.0
14 TraesCS4B01G032000 chr2B 90.271 627 51 7 5845 6464 770040989 770041612 0.000000e+00 811.0
15 TraesCS4B01G032000 chr3B 90.777 618 50 5 5853 6466 803329630 803330244 0.000000e+00 819.0
16 TraesCS4B01G032000 chr3B 91.133 609 43 8 5851 6454 123479940 123479338 0.000000e+00 815.0
17 TraesCS4B01G032000 chr3B 90.484 620 46 8 5853 6465 803507567 803508180 0.000000e+00 806.0
18 TraesCS4B01G032000 chr3B 90.323 620 50 7 5853 6466 803501550 803502165 0.000000e+00 804.0
19 TraesCS4B01G032000 chr3B 90.507 611 46 9 5851 6455 19741699 19741095 0.000000e+00 797.0
20 TraesCS4B01G032000 chr3B 82.914 556 78 14 5847 6392 798131183 798131731 9.750000e-133 484.0
21 TraesCS4B01G032000 chr3B 86.567 67 6 1 6404 6467 513494003 513493937 3.230000e-08 71.3
22 TraesCS4B01G032000 chr7B 91.709 591 41 5 5851 6434 583368883 583368294 0.000000e+00 813.0
23 TraesCS4B01G032000 chr7B 84.146 82 13 0 1775 1856 265430596 265430677 5.380000e-11 80.5
24 TraesCS4B01G032000 chr5B 91.809 586 44 4 5851 6434 662532604 662533187 0.000000e+00 813.0
25 TraesCS4B01G032000 chr7D 85.333 75 11 0 1778 1852 272601465 272601391 1.930000e-10 78.7
26 TraesCS4B01G032000 chr7A 85.333 75 11 0 1778 1852 306347940 306347866 1.930000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G032000 chr4B 23817506 23823972 6466 True 5368.000000 10126 100.00000 1 6467 2 chr4B.!!$R1 6466
1 TraesCS4B01G032000 chr4B 81936360 81936945 585 False 809.000000 809 91.66700 5851 6434 1 chr4B.!!$F1 583
2 TraesCS4B01G032000 chr4A 589106673 589112484 5811 False 1009.316667 3114 90.36250 1 5740 6 chr4A.!!$F1 5739
3 TraesCS4B01G032000 chr4D 13196583 13200921 4338 True 1454.000000 2723 92.38425 1063 5334 4 chr4D.!!$R1 4271
4 TraesCS4B01G032000 chr2B 17039818 17041204 1386 False 2115.000000 2115 94.46000 1311 2675 1 chr2B.!!$F1 1364
5 TraesCS4B01G032000 chr2B 770040989 770041612 623 False 811.000000 811 90.27100 5845 6464 1 chr2B.!!$F2 619
6 TraesCS4B01G032000 chr3B 803329630 803330244 614 False 819.000000 819 90.77700 5853 6466 1 chr3B.!!$F2 613
7 TraesCS4B01G032000 chr3B 123479338 123479940 602 True 815.000000 815 91.13300 5851 6454 1 chr3B.!!$R2 603
8 TraesCS4B01G032000 chr3B 803507567 803508180 613 False 806.000000 806 90.48400 5853 6465 1 chr3B.!!$F4 612
9 TraesCS4B01G032000 chr3B 803501550 803502165 615 False 804.000000 804 90.32300 5853 6466 1 chr3B.!!$F3 613
10 TraesCS4B01G032000 chr3B 19741095 19741699 604 True 797.000000 797 90.50700 5851 6455 1 chr3B.!!$R1 604
11 TraesCS4B01G032000 chr3B 798131183 798131731 548 False 484.000000 484 82.91400 5847 6392 1 chr3B.!!$F1 545
12 TraesCS4B01G032000 chr7B 583368294 583368883 589 True 813.000000 813 91.70900 5851 6434 1 chr7B.!!$R1 583
13 TraesCS4B01G032000 chr5B 662532604 662533187 583 False 813.000000 813 91.80900 5851 6434 1 chr5B.!!$F1 583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
215 219 0.107703 GATCTCGGCAATCACCACCA 60.108 55.0 0.00 0.00 0.00 4.17 F
1006 1113 0.034756 GGTTGAATTTTGGCCGGCTT 59.965 50.0 28.56 12.69 0.00 4.35 F
1362 1486 0.176680 TTCTTCGGATGCTCTGCCTC 59.823 55.0 0.00 0.00 0.00 4.70 F
2597 2779 0.461693 GGAGAGCACCTGAGATGCAC 60.462 60.0 0.00 0.00 45.92 4.57 F
2642 2824 0.531974 ACGCTGTGGTTCGTGATGTT 60.532 50.0 0.00 0.00 37.55 2.71 F
3686 3992 0.603065 AAGGACCATTGCTTTTCCGC 59.397 50.0 0.00 0.00 32.97 5.54 F
3881 4270 0.317687 GGTAGACGCGCCTACTAAGC 60.318 60.0 27.84 10.99 39.11 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2019 2196 0.163788 CGAGATCGTGCCACACAAAC 59.836 55.000 0.00 0.00 33.40 2.93 R
2822 3004 1.009829 GCACGACAATGTCATCCTCC 58.990 55.000 14.24 0.00 32.09 4.30 R
2975 3157 2.998667 CGAGAAATCAGCGGCGAC 59.001 61.111 12.98 1.23 0.00 5.19 R
3831 4220 0.250770 GCCCTGACCTCGGTTTTCTT 60.251 55.000 0.00 0.00 0.00 2.52 R
3833 4222 0.322546 ATGCCCTGACCTCGGTTTTC 60.323 55.000 0.00 0.00 0.00 2.29 R
4955 5371 0.250234 GCAAGGGGGAAATCAAAGCC 59.750 55.000 0.00 0.00 0.00 4.35 R
5797 6317 0.035056 CTCGTTTGGCCCAAGATCCT 60.035 55.000 0.00 0.00 0.00 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.858935 CAAAATGTGGATGAAACGAGTGT 58.141 39.130 0.00 0.00 0.00 3.55
50 51 2.882137 GTTTTCCTTCACCGAATCACCA 59.118 45.455 0.00 0.00 0.00 4.17
51 52 3.433306 TTTCCTTCACCGAATCACCAT 57.567 42.857 0.00 0.00 0.00 3.55
54 55 2.009774 CCTTCACCGAATCACCATGTC 58.990 52.381 0.00 0.00 0.00 3.06
63 64 0.921896 ATCACCATGTCCAAGGGAGG 59.078 55.000 0.00 0.00 29.39 4.30
64 65 0.178876 TCACCATGTCCAAGGGAGGA 60.179 55.000 0.00 0.00 34.64 3.71
91 95 3.775316 GAGGAGGATAAGTTCCCACAAGA 59.225 47.826 0.00 0.00 46.81 3.02
95 99 5.183331 GGAGGATAAGTTCCCACAAGAAAAC 59.817 44.000 0.00 0.00 46.81 2.43
97 101 6.133356 AGGATAAGTTCCCACAAGAAAACAA 58.867 36.000 0.00 0.00 46.81 2.83
98 102 6.782494 AGGATAAGTTCCCACAAGAAAACAAT 59.218 34.615 0.00 0.00 46.81 2.71
102 106 5.701224 AGTTCCCACAAGAAAACAATCCTA 58.299 37.500 0.00 0.00 0.00 2.94
103 107 6.314917 AGTTCCCACAAGAAAACAATCCTAT 58.685 36.000 0.00 0.00 0.00 2.57
123 127 9.652114 ATCCTATAAAATCTCTGCAAATTTCCT 57.348 29.630 0.00 0.00 0.00 3.36
124 128 9.125026 TCCTATAAAATCTCTGCAAATTTCCTC 57.875 33.333 0.00 0.00 0.00 3.71
125 129 9.129532 CCTATAAAATCTCTGCAAATTTCCTCT 57.870 33.333 0.00 0.00 0.00 3.69
126 130 9.947669 CTATAAAATCTCTGCAAATTTCCTCTG 57.052 33.333 0.00 0.00 0.00 3.35
127 131 5.656213 AAATCTCTGCAAATTTCCTCTGG 57.344 39.130 0.00 0.00 0.00 3.86
128 132 3.795688 TCTCTGCAAATTTCCTCTGGT 57.204 42.857 0.00 0.00 0.00 4.00
129 133 4.104383 TCTCTGCAAATTTCCTCTGGTT 57.896 40.909 0.00 0.00 0.00 3.67
130 134 4.473444 TCTCTGCAAATTTCCTCTGGTTT 58.527 39.130 0.00 0.00 0.00 3.27
131 135 4.520492 TCTCTGCAAATTTCCTCTGGTTTC 59.480 41.667 0.00 0.00 0.00 2.78
135 139 5.927819 TGCAAATTTCCTCTGGTTTCAAAT 58.072 33.333 0.00 0.00 0.00 2.32
215 219 0.107703 GATCTCGGCAATCACCACCA 60.108 55.000 0.00 0.00 0.00 4.17
216 220 0.327924 ATCTCGGCAATCACCACCAA 59.672 50.000 0.00 0.00 0.00 3.67
217 221 0.327924 TCTCGGCAATCACCACCAAT 59.672 50.000 0.00 0.00 0.00 3.16
218 222 0.452987 CTCGGCAATCACCACCAATG 59.547 55.000 0.00 0.00 0.00 2.82
227 231 4.431131 CCACCAATGGCCTCCGCT 62.431 66.667 3.32 0.00 39.82 5.52
228 232 2.361610 CACCAATGGCCTCCGCTT 60.362 61.111 3.32 0.00 34.44 4.68
229 233 2.044946 ACCAATGGCCTCCGCTTC 60.045 61.111 3.32 0.00 34.44 3.86
230 234 3.204827 CCAATGGCCTCCGCTTCG 61.205 66.667 3.32 0.00 34.44 3.79
231 235 3.880846 CAATGGCCTCCGCTTCGC 61.881 66.667 3.32 0.00 34.44 4.70
311 315 2.395690 CAAAAGCGCGCCTCGTAG 59.604 61.111 30.33 9.61 41.07 3.51
312 316 2.048503 AAAAGCGCGCCTCGTAGT 60.049 55.556 30.33 3.60 41.07 2.73
313 317 1.074319 CAAAAGCGCGCCTCGTAGTA 61.074 55.000 30.33 0.00 41.07 1.82
317 321 2.099062 CGCGCCTCGTAGTACGTT 59.901 61.111 21.38 0.00 43.14 3.99
1004 1111 1.375396 GGGTTGAATTTTGGCCGGC 60.375 57.895 21.18 21.18 0.00 6.13
1005 1112 1.671166 GGTTGAATTTTGGCCGGCT 59.329 52.632 28.56 4.40 0.00 5.52
1006 1113 0.034756 GGTTGAATTTTGGCCGGCTT 59.965 50.000 28.56 12.69 0.00 4.35
1008 1115 0.320050 TTGAATTTTGGCCGGCTTCC 59.680 50.000 28.56 10.74 0.00 3.46
1033 1143 3.097614 TCAGCCTTTCAGGTACCTCTAC 58.902 50.000 12.84 0.00 37.80 2.59
1041 1151 2.412112 GTACCTCTACCCAGCGCG 59.588 66.667 0.00 0.00 0.00 6.86
1047 1157 2.061182 CTCTACCCAGCGCGTACCTC 62.061 65.000 8.43 0.00 0.00 3.85
1059 1169 0.179145 CGTACCTCGCAGAACCGATT 60.179 55.000 0.00 0.00 36.54 3.34
1060 1170 1.734707 CGTACCTCGCAGAACCGATTT 60.735 52.381 0.00 0.00 36.54 2.17
1061 1171 1.925185 GTACCTCGCAGAACCGATTTC 59.075 52.381 0.00 0.00 36.54 2.17
1077 1187 5.246429 ACCGATTTCTTCTTCTTGGAGTAGT 59.754 40.000 0.00 0.00 0.00 2.73
1089 1207 5.209659 TCTTGGAGTAGTAGAATTCCCTCC 58.790 45.833 0.65 9.69 39.13 4.30
1093 1211 4.548669 GAGTAGTAGAATTCCCTCCCTGT 58.451 47.826 0.65 0.00 0.00 4.00
1094 1212 4.961585 AGTAGTAGAATTCCCTCCCTGTT 58.038 43.478 0.65 0.00 0.00 3.16
1095 1213 4.963628 AGTAGTAGAATTCCCTCCCTGTTC 59.036 45.833 0.65 0.00 0.00 3.18
1096 1214 4.081695 AGTAGAATTCCCTCCCTGTTCT 57.918 45.455 0.65 0.00 33.96 3.01
1097 1215 4.034410 AGTAGAATTCCCTCCCTGTTCTC 58.966 47.826 0.65 0.00 32.02 2.87
1098 1216 2.200955 AGAATTCCCTCCCTGTTCTCC 58.799 52.381 0.65 0.00 0.00 3.71
1099 1217 0.912486 AATTCCCTCCCTGTTCTCCG 59.088 55.000 0.00 0.00 0.00 4.63
1100 1218 0.252742 ATTCCCTCCCTGTTCTCCGT 60.253 55.000 0.00 0.00 0.00 4.69
1173 1291 1.103398 GCCGGGTGATTCCTCCATTG 61.103 60.000 2.18 0.00 36.25 2.82
1270 1388 4.796495 ACCCGGCGAGCCAATTCC 62.796 66.667 9.30 0.00 35.37 3.01
1348 1466 3.704566 AGGGTCCAAACACCTTTTTCTTC 59.295 43.478 0.00 0.00 36.57 2.87
1359 1483 2.159462 CCTTTTTCTTCGGATGCTCTGC 60.159 50.000 0.00 0.00 0.00 4.26
1360 1484 1.453155 TTTTCTTCGGATGCTCTGCC 58.547 50.000 0.00 0.00 0.00 4.85
1361 1485 0.615331 TTTCTTCGGATGCTCTGCCT 59.385 50.000 0.00 0.00 0.00 4.75
1362 1486 0.176680 TTCTTCGGATGCTCTGCCTC 59.823 55.000 0.00 0.00 0.00 4.70
1363 1487 0.685785 TCTTCGGATGCTCTGCCTCT 60.686 55.000 0.00 0.00 0.00 3.69
1364 1488 0.530211 CTTCGGATGCTCTGCCTCTG 60.530 60.000 0.00 0.00 32.26 3.35
1727 1851 0.881796 TCAGTCTGCTCGTACCACAG 59.118 55.000 0.00 0.00 0.00 3.66
1736 1860 2.596452 CTCGTACCACAGCTTGTGTAG 58.404 52.381 13.06 4.21 46.45 2.74
1754 1878 3.627123 TGTAGTGGCGATTGATTGATTGG 59.373 43.478 0.00 0.00 0.00 3.16
1864 1996 3.222603 CAAGAGGTAAACCAACCAAGCT 58.777 45.455 1.26 0.00 42.40 3.74
1888 2020 3.383761 CAAGCAACCAAGCGAAATTCTT 58.616 40.909 0.00 0.00 40.15 2.52
1988 2165 9.357652 TGACAAGAAGTTTTCTGAATTTTTGAG 57.642 29.630 10.58 0.00 40.59 3.02
1989 2166 9.358872 GACAAGAAGTTTTCTGAATTTTTGAGT 57.641 29.630 10.58 0.00 40.59 3.41
1990 2167 9.710900 ACAAGAAGTTTTCTGAATTTTTGAGTT 57.289 25.926 10.58 0.00 40.59 3.01
1992 2169 8.932945 AGAAGTTTTCTGAATTTTTGAGTTCC 57.067 30.769 0.00 0.00 38.91 3.62
1993 2170 8.753133 AGAAGTTTTCTGAATTTTTGAGTTCCT 58.247 29.630 0.00 0.00 38.91 3.36
1994 2171 8.707938 AAGTTTTCTGAATTTTTGAGTTCCTG 57.292 30.769 0.00 0.00 0.00 3.86
1995 2172 8.066612 AGTTTTCTGAATTTTTGAGTTCCTGA 57.933 30.769 0.00 0.00 0.00 3.86
1996 2173 8.531146 AGTTTTCTGAATTTTTGAGTTCCTGAA 58.469 29.630 0.00 0.00 0.00 3.02
1997 2174 9.317936 GTTTTCTGAATTTTTGAGTTCCTGAAT 57.682 29.630 0.00 0.00 0.00 2.57
1998 2175 9.889128 TTTTCTGAATTTTTGAGTTCCTGAATT 57.111 25.926 0.00 0.00 0.00 2.17
1999 2176 9.889128 TTTCTGAATTTTTGAGTTCCTGAATTT 57.111 25.926 0.00 0.00 0.00 1.82
2000 2177 9.533253 TTCTGAATTTTTGAGTTCCTGAATTTC 57.467 29.630 0.00 0.00 0.00 2.17
2016 2193 5.819991 TGAATTTCCAGGAGCTACAAGAAT 58.180 37.500 0.00 0.00 0.00 2.40
2019 2196 1.839994 TCCAGGAGCTACAAGAATGGG 59.160 52.381 0.00 0.00 0.00 4.00
2022 2199 3.562176 CCAGGAGCTACAAGAATGGGTTT 60.562 47.826 0.00 0.00 0.00 3.27
2597 2779 0.461693 GGAGAGCACCTGAGATGCAC 60.462 60.000 0.00 0.00 45.92 4.57
2642 2824 0.531974 ACGCTGTGGTTCGTGATGTT 60.532 50.000 0.00 0.00 37.55 2.71
2726 2908 1.073722 CATGTCCCACTGTGCCACT 59.926 57.895 1.29 0.00 0.00 4.00
2822 3004 4.332268 GCTAACAGCTTCAGGATTCTTGAG 59.668 45.833 0.00 0.00 38.45 3.02
2828 3010 3.136260 GCTTCAGGATTCTTGAGGAGGAT 59.864 47.826 11.41 0.00 0.00 3.24
2909 3091 2.355756 CACCTGTGGTTCACTTTCAGTG 59.644 50.000 0.00 0.00 39.92 3.66
2930 3112 3.444742 TGAAGGATCATGACAACATTGGC 59.555 43.478 0.00 0.00 34.15 4.52
2960 3142 1.165270 CTTACAAGCCAAGGTTCCCG 58.835 55.000 0.00 0.00 0.00 5.14
3152 3334 3.120649 CGGTGCTTAAAAGGTCTTCTTCG 60.121 47.826 0.00 0.00 33.94 3.79
3155 3337 5.642491 GGTGCTTAAAAGGTCTTCTTCGTAT 59.358 40.000 0.00 0.00 33.94 3.06
3158 3340 8.167345 GTGCTTAAAAGGTCTTCTTCGTATAAC 58.833 37.037 0.00 0.00 33.94 1.89
3172 3354 7.037438 TCTTCGTATAACGCAGAAAGGTAAAT 58.963 34.615 0.00 0.00 40.59 1.40
3186 3371 1.202031 GGTAAATTCAGTGCTTCCGCG 60.202 52.381 0.00 0.00 39.65 6.46
3211 3396 7.215568 CGTTACATTTCGGTTGTGCTTAAATAG 59.784 37.037 0.00 0.00 0.00 1.73
3243 3428 8.978874 ATTTAGAAATTTTCCCTTTTGTGCTT 57.021 26.923 5.52 0.00 0.00 3.91
3250 3435 9.489084 AAATTTTCCCTTTTGTGCTTAGATAAC 57.511 29.630 0.00 0.00 0.00 1.89
3256 3441 8.380099 TCCCTTTTGTGCTTAGATAACTTAAGA 58.620 33.333 10.09 0.00 0.00 2.10
3280 3465 9.765795 AGACTATTTGTATTACTTGACCTATGC 57.234 33.333 0.00 0.00 0.00 3.14
3289 3474 2.910319 ACTTGACCTATGCCACTGGTTA 59.090 45.455 0.00 0.00 33.74 2.85
3296 3481 5.580022 ACCTATGCCACTGGTTAAGAAAAT 58.420 37.500 0.00 0.00 0.00 1.82
3299 3484 6.263168 CCTATGCCACTGGTTAAGAAAATAGG 59.737 42.308 0.00 0.00 0.00 2.57
3303 3514 6.156519 GCCACTGGTTAAGAAAATAGGTTTG 58.843 40.000 0.00 0.00 0.00 2.93
3319 3530 5.242795 AGGTTTGTGGCTAATTCTGTAGT 57.757 39.130 0.00 0.00 0.00 2.73
3324 3535 5.748670 TGTGGCTAATTCTGTAGTGGTTA 57.251 39.130 0.00 0.00 0.00 2.85
3325 3536 5.484715 TGTGGCTAATTCTGTAGTGGTTAC 58.515 41.667 0.00 0.00 0.00 2.50
3326 3537 5.247564 TGTGGCTAATTCTGTAGTGGTTACT 59.752 40.000 0.00 0.00 40.99 2.24
3327 3538 6.171213 GTGGCTAATTCTGTAGTGGTTACTT 58.829 40.000 0.00 0.00 38.36 2.24
3328 3539 6.092259 GTGGCTAATTCTGTAGTGGTTACTTG 59.908 42.308 0.00 0.00 38.36 3.16
3329 3540 6.014070 TGGCTAATTCTGTAGTGGTTACTTGA 60.014 38.462 0.00 0.00 38.36 3.02
3330 3541 6.313164 GGCTAATTCTGTAGTGGTTACTTGAC 59.687 42.308 0.00 0.00 38.36 3.18
3331 3542 6.872020 GCTAATTCTGTAGTGGTTACTTGACA 59.128 38.462 0.00 0.00 38.36 3.58
3332 3543 7.063544 GCTAATTCTGTAGTGGTTACTTGACAG 59.936 40.741 0.00 0.00 41.61 3.51
3333 3544 5.864418 TTCTGTAGTGGTTACTTGACAGT 57.136 39.130 9.10 0.00 41.27 3.55
3334 3545 5.864418 TCTGTAGTGGTTACTTGACAGTT 57.136 39.130 9.10 0.00 41.27 3.16
3335 3546 5.839621 TCTGTAGTGGTTACTTGACAGTTC 58.160 41.667 9.10 0.00 41.27 3.01
3336 3547 5.361571 TCTGTAGTGGTTACTTGACAGTTCA 59.638 40.000 9.10 0.00 41.27 3.18
3337 3548 6.041637 TCTGTAGTGGTTACTTGACAGTTCAT 59.958 38.462 9.10 0.00 41.27 2.57
3338 3549 7.231925 TCTGTAGTGGTTACTTGACAGTTCATA 59.768 37.037 9.10 0.00 41.27 2.15
3339 3550 7.149973 TGTAGTGGTTACTTGACAGTTCATAC 58.850 38.462 0.00 0.00 38.36 2.39
3340 3551 6.420913 AGTGGTTACTTGACAGTTCATACT 57.579 37.500 0.00 0.00 31.66 2.12
3341 3552 6.827727 AGTGGTTACTTGACAGTTCATACTT 58.172 36.000 0.00 0.00 31.66 2.24
3342 3553 7.280356 AGTGGTTACTTGACAGTTCATACTTT 58.720 34.615 0.00 0.00 31.66 2.66
3343 3554 8.426489 AGTGGTTACTTGACAGTTCATACTTTA 58.574 33.333 0.00 0.00 31.66 1.85
3344 3555 8.493547 GTGGTTACTTGACAGTTCATACTTTAC 58.506 37.037 0.00 0.00 34.06 2.01
3345 3556 8.205512 TGGTTACTTGACAGTTCATACTTTACA 58.794 33.333 0.00 0.00 34.06 2.41
3346 3557 9.048446 GGTTACTTGACAGTTCATACTTTACAA 57.952 33.333 0.00 0.00 34.06 2.41
3349 3560 8.324163 ACTTGACAGTTCATACTTTACAATCC 57.676 34.615 0.00 0.00 30.26 3.01
3350 3561 8.157476 ACTTGACAGTTCATACTTTACAATCCT 58.843 33.333 0.00 0.00 30.26 3.24
3351 3562 9.653287 CTTGACAGTTCATACTTTACAATCCTA 57.347 33.333 0.00 0.00 30.26 2.94
3367 3578 7.919385 ACAATCCTATAATGCATTTTTCCCT 57.081 32.000 18.75 0.00 0.00 4.20
3368 3579 8.322905 ACAATCCTATAATGCATTTTTCCCTT 57.677 30.769 18.75 2.94 0.00 3.95
3369 3580 8.206189 ACAATCCTATAATGCATTTTTCCCTTG 58.794 33.333 18.75 16.01 0.00 3.61
3370 3581 7.919385 ATCCTATAATGCATTTTTCCCTTGT 57.081 32.000 18.75 0.00 0.00 3.16
3371 3582 7.111247 TCCTATAATGCATTTTTCCCTTGTG 57.889 36.000 18.75 0.00 0.00 3.33
3372 3583 6.667414 TCCTATAATGCATTTTTCCCTTGTGT 59.333 34.615 18.75 0.00 0.00 3.72
3373 3584 6.757947 CCTATAATGCATTTTTCCCTTGTGTG 59.242 38.462 18.75 0.00 0.00 3.82
3374 3585 4.420522 AATGCATTTTTCCCTTGTGTGT 57.579 36.364 5.99 0.00 0.00 3.72
3375 3586 3.902881 TGCATTTTTCCCTTGTGTGTT 57.097 38.095 0.00 0.00 0.00 3.32
3376 3587 4.213564 TGCATTTTTCCCTTGTGTGTTT 57.786 36.364 0.00 0.00 0.00 2.83
3377 3588 4.583871 TGCATTTTTCCCTTGTGTGTTTT 58.416 34.783 0.00 0.00 0.00 2.43
3378 3589 5.006386 TGCATTTTTCCCTTGTGTGTTTTT 58.994 33.333 0.00 0.00 0.00 1.94
3412 3623 8.940952 AGAAAATACTTGACAGCTTCATACTTC 58.059 33.333 0.00 0.00 32.84 3.01
3426 3637 6.016610 GCTTCATACTTCACCTTGGTGTTTTA 60.017 38.462 18.05 8.90 0.00 1.52
3468 3679 5.867330 TGATTGATTGGGTGCTTCATTTTT 58.133 33.333 0.00 0.00 0.00 1.94
3480 3691 7.804600 GGGTGCTTCATTTTTCAAAATCATTTC 59.195 33.333 0.00 0.00 36.52 2.17
3637 3848 5.753921 CGGCGAATTTAGAGATAGGAAAAGT 59.246 40.000 0.00 0.00 0.00 2.66
3686 3992 0.603065 AAGGACCATTGCTTTTCCGC 59.397 50.000 0.00 0.00 32.97 5.54
3698 4004 3.128589 TGCTTTTCCGCCATTTAGTGATC 59.871 43.478 0.00 0.00 0.00 2.92
3702 4008 0.884704 CCGCCATTTAGTGATCCCCG 60.885 60.000 0.00 0.00 0.00 5.73
3712 4018 1.133730 AGTGATCCCCGGACTCTAGAC 60.134 57.143 0.73 0.00 0.00 2.59
3756 4062 4.379174 CCAACGGCACTGCTAAGT 57.621 55.556 0.00 0.00 36.98 2.24
3767 4073 2.417933 CACTGCTAAGTTCATGTCCTGC 59.582 50.000 0.00 0.00 32.98 4.85
3831 4220 6.681729 AACAAAGTACAGGGAATCTACTGA 57.318 37.500 11.23 0.00 38.09 3.41
3833 4222 6.702329 ACAAAGTACAGGGAATCTACTGAAG 58.298 40.000 11.23 0.00 38.09 3.02
3837 4226 7.554959 AGTACAGGGAATCTACTGAAGAAAA 57.445 36.000 11.23 0.00 37.89 2.29
3838 4227 7.387643 AGTACAGGGAATCTACTGAAGAAAAC 58.612 38.462 11.23 2.38 37.89 2.43
3839 4228 5.561679 ACAGGGAATCTACTGAAGAAAACC 58.438 41.667 11.23 0.00 37.89 3.27
3868 4257 3.055891 AGGGCATTGCAAAATTGGTAGAC 60.056 43.478 11.39 0.00 0.00 2.59
3880 4269 1.019673 TGGTAGACGCGCCTACTAAG 58.980 55.000 27.84 0.00 39.11 2.18
3881 4270 0.317687 GGTAGACGCGCCTACTAAGC 60.318 60.000 27.84 10.99 39.11 3.09
3924 4316 3.682858 TGCGCATTTCACCTTAGTAGTTC 59.317 43.478 5.66 0.00 0.00 3.01
3966 4358 6.620678 TGCATATTTTTGAACTAGGAACAGC 58.379 36.000 0.00 0.00 0.00 4.40
4035 4428 2.308570 AGAACATGGGTAGATTGGTGCA 59.691 45.455 0.00 0.00 0.00 4.57
4049 4442 0.881796 GGTGCAAAGCAGGAGTTACC 59.118 55.000 0.00 0.00 40.08 2.85
4154 4562 9.817809 TCTACAGTTTTAATTCTATGGCAGTAG 57.182 33.333 0.00 0.00 0.00 2.57
4175 4583 2.294233 GCTTCACTTGTTCATTGCCAGA 59.706 45.455 0.00 0.00 0.00 3.86
4180 4588 2.620115 ACTTGTTCATTGCCAGACACAG 59.380 45.455 0.00 0.00 0.00 3.66
4199 4607 2.475487 CAGCACGAGCATATGTCAGATG 59.525 50.000 7.77 2.95 45.49 2.90
4204 4612 5.284864 CACGAGCATATGTCAGATGTAGTT 58.715 41.667 9.13 0.00 0.00 2.24
4223 4631 5.407407 AGTTTAGAGGACCACACTACATG 57.593 43.478 0.00 0.00 0.00 3.21
4266 4674 2.427232 TGCTCAACTGAAAATGCAGC 57.573 45.000 0.00 0.00 39.51 5.25
4298 4706 9.315525 CAGATATCCTATTGCTTCATACTGATG 57.684 37.037 0.00 0.00 0.00 3.07
4380 4796 3.902162 AACTGCAAATGCCAGCGCG 62.902 57.895 0.00 0.00 41.18 6.86
4430 4846 3.005791 GGACCATTTTCTGTTTCACCCTG 59.994 47.826 0.00 0.00 0.00 4.45
4448 4864 6.659242 TCACCCTGTTAGAATCCAAAGAATTC 59.341 38.462 0.00 0.00 0.00 2.17
4589 5005 2.476185 CCATGCGAGTTTCATCGGTTTC 60.476 50.000 0.00 0.00 42.94 2.78
4627 5043 1.247567 GGTGGTGTTCTTGACCATGG 58.752 55.000 11.19 11.19 45.27 3.66
4630 5046 2.489329 GTGGTGTTCTTGACCATGGATG 59.511 50.000 21.47 5.24 45.27 3.51
4776 5192 2.283388 ACGCAGAAGTCCCCGGTA 60.283 61.111 0.00 0.00 0.00 4.02
4926 5342 4.390264 AGGAAAGTTAAGTGCTCCAACTC 58.610 43.478 12.19 0.00 31.43 3.01
4955 5371 0.807667 GCACTGGGTATGCACTCGAG 60.808 60.000 11.84 11.84 42.88 4.04
4963 5379 2.555199 GTATGCACTCGAGGCTTTGAT 58.445 47.619 18.41 9.04 0.00 2.57
4964 5380 2.119801 ATGCACTCGAGGCTTTGATT 57.880 45.000 18.41 0.00 0.00 2.57
4966 5382 1.806542 TGCACTCGAGGCTTTGATTTC 59.193 47.619 18.41 0.00 0.00 2.17
4970 5388 0.034477 TCGAGGCTTTGATTTCCCCC 60.034 55.000 0.00 0.00 0.00 5.40
4981 5399 3.096092 TGATTTCCCCCTTGCAACATAC 58.904 45.455 0.00 0.00 0.00 2.39
5039 5457 3.428316 GGTTTTTGTTGTGGATCGTGTGT 60.428 43.478 0.00 0.00 0.00 3.72
5040 5458 3.412981 TTTTGTTGTGGATCGTGTGTG 57.587 42.857 0.00 0.00 0.00 3.82
5181 5599 4.493872 GCGCTCTCTTTGCTTCTTTAGATG 60.494 45.833 0.00 0.00 0.00 2.90
5182 5600 4.867047 CGCTCTCTTTGCTTCTTTAGATGA 59.133 41.667 0.00 0.00 0.00 2.92
5183 5601 5.523188 CGCTCTCTTTGCTTCTTTAGATGAT 59.477 40.000 0.00 0.00 0.00 2.45
5234 5655 7.852945 GTGTTTTCTTTCTTGAGATGTGTAGTG 59.147 37.037 0.00 0.00 0.00 2.74
5264 5701 6.992715 AGCTTTATTCTTCAGGCGTAATGTAT 59.007 34.615 0.00 0.00 0.00 2.29
5265 5702 8.148351 AGCTTTATTCTTCAGGCGTAATGTATA 58.852 33.333 0.00 0.00 0.00 1.47
5337 5774 6.872020 TCAGTTGTAGTAAGTGCCTGTTAATC 59.128 38.462 0.00 0.00 0.00 1.75
5356 5793 4.900635 ATCCCATTTTGTGCTCGTTATC 57.099 40.909 0.00 0.00 0.00 1.75
5362 5799 5.451908 CATTTTGTGCTCGTTATCAGTTGT 58.548 37.500 0.00 0.00 0.00 3.32
5389 5846 7.989826 AGCTTTATGGTTTAATCTGTGCTTAG 58.010 34.615 0.00 0.00 0.00 2.18
5402 5859 5.491070 TCTGTGCTTAGCAGAATTATGTGT 58.509 37.500 7.34 0.00 40.08 3.72
5404 5861 4.142622 TGTGCTTAGCAGAATTATGTGTGC 60.143 41.667 7.34 2.86 40.08 4.57
5406 5863 5.294306 GTGCTTAGCAGAATTATGTGTGCTA 59.706 40.000 7.34 0.36 44.42 3.49
5453 5910 2.622942 TCACCAGAAACAGGAAATGCAC 59.377 45.455 0.00 0.00 0.00 4.57
5458 5915 3.730715 CAGAAACAGGAAATGCACGTTTC 59.269 43.478 6.76 6.76 43.58 2.78
5460 5917 3.354089 AACAGGAAATGCACGTTTCAG 57.646 42.857 15.26 10.23 39.33 3.02
5464 5922 4.111916 CAGGAAATGCACGTTTCAGTTTT 58.888 39.130 15.26 0.00 39.33 2.43
5488 5946 5.648178 TCAGCATAAGAAATGCATGTGTT 57.352 34.783 12.12 1.25 46.77 3.32
5495 5953 7.707893 GCATAAGAAATGCATGTGTTTTAGGAT 59.292 33.333 4.33 0.00 44.00 3.24
5498 5956 8.907222 AAGAAATGCATGTGTTTTAGGATTTT 57.093 26.923 0.00 0.00 33.18 1.82
5564 6025 7.042797 TGGTACAATAATAAGTAGACCGTCC 57.957 40.000 0.00 0.00 31.92 4.79
5565 6026 6.040842 TGGTACAATAATAAGTAGACCGTCCC 59.959 42.308 0.00 0.00 31.92 4.46
5566 6027 5.541953 ACAATAATAAGTAGACCGTCCCC 57.458 43.478 0.00 0.00 0.00 4.81
5567 6028 4.038402 ACAATAATAAGTAGACCGTCCCCG 59.962 45.833 0.00 0.00 0.00 5.73
5568 6029 0.749049 AATAAGTAGACCGTCCCCGC 59.251 55.000 0.00 0.00 0.00 6.13
5569 6030 0.396139 ATAAGTAGACCGTCCCCGCA 60.396 55.000 0.00 0.00 0.00 5.69
5570 6031 0.611618 TAAGTAGACCGTCCCCGCAA 60.612 55.000 0.00 0.00 0.00 4.85
5571 6032 1.474332 AAGTAGACCGTCCCCGCAAA 61.474 55.000 0.00 0.00 0.00 3.68
5572 6033 1.004679 GTAGACCGTCCCCGCAAAA 60.005 57.895 0.00 0.00 0.00 2.44
5573 6034 0.392060 GTAGACCGTCCCCGCAAAAT 60.392 55.000 0.00 0.00 0.00 1.82
5574 6035 1.134729 GTAGACCGTCCCCGCAAAATA 60.135 52.381 0.00 0.00 0.00 1.40
5575 6036 0.325602 AGACCGTCCCCGCAAAATAA 59.674 50.000 0.00 0.00 0.00 1.40
5576 6037 1.064979 AGACCGTCCCCGCAAAATAAT 60.065 47.619 0.00 0.00 0.00 1.28
5602 6063 8.649973 AATAATAAGTAGACCGAAGAAAGCAG 57.350 34.615 0.00 0.00 0.00 4.24
5603 6064 5.662674 ATAAGTAGACCGAAGAAAGCAGT 57.337 39.130 0.00 0.00 0.00 4.40
5612 6073 5.169295 ACCGAAGAAAGCAGTAATCAGTAC 58.831 41.667 0.00 0.00 0.00 2.73
5620 6081 9.555727 AGAAAGCAGTAATCAGTACAGTAAAAA 57.444 29.630 0.00 0.00 34.88 1.94
5657 6118 0.110486 GGCCAAACCTCCACTGAAGA 59.890 55.000 0.00 0.00 34.51 2.87
5661 6122 3.321968 GCCAAACCTCCACTGAAGATTTT 59.678 43.478 0.00 0.00 0.00 1.82
5682 6143 5.755330 TTTCGTTGTTGCTTTGAAGAAAC 57.245 34.783 7.52 7.52 43.56 2.78
5743 6263 9.893305 AATGTACTTGTAAGTGTGATTTTAAGC 57.107 29.630 7.50 0.00 40.07 3.09
5744 6264 8.439993 TGTACTTGTAAGTGTGATTTTAAGCA 57.560 30.769 7.50 0.00 40.07 3.91
5745 6265 9.062524 TGTACTTGTAAGTGTGATTTTAAGCAT 57.937 29.630 7.50 0.00 40.07 3.79
5750 6270 9.767684 TTGTAAGTGTGATTTTAAGCATATTCG 57.232 29.630 0.00 0.00 0.00 3.34
5751 6271 8.394877 TGTAAGTGTGATTTTAAGCATATTCGG 58.605 33.333 0.00 0.00 0.00 4.30
5752 6272 5.821204 AGTGTGATTTTAAGCATATTCGGC 58.179 37.500 0.00 0.00 0.00 5.54
5753 6273 4.976116 GTGTGATTTTAAGCATATTCGGCC 59.024 41.667 0.00 0.00 0.00 6.13
5754 6274 4.037446 TGTGATTTTAAGCATATTCGGCCC 59.963 41.667 0.00 0.00 0.00 5.80
5755 6275 4.037446 GTGATTTTAAGCATATTCGGCCCA 59.963 41.667 0.00 0.00 0.00 5.36
5756 6276 4.646945 TGATTTTAAGCATATTCGGCCCAA 59.353 37.500 0.00 0.00 0.00 4.12
5757 6277 4.647424 TTTTAAGCATATTCGGCCCAAG 57.353 40.909 0.00 0.00 0.00 3.61
5758 6278 3.290948 TTAAGCATATTCGGCCCAAGT 57.709 42.857 0.00 0.00 0.00 3.16
5759 6279 2.143876 AAGCATATTCGGCCCAAGTT 57.856 45.000 0.00 0.00 0.00 2.66
5760 6280 1.680338 AGCATATTCGGCCCAAGTTC 58.320 50.000 0.00 0.00 0.00 3.01
5761 6281 1.064758 AGCATATTCGGCCCAAGTTCA 60.065 47.619 0.00 0.00 0.00 3.18
5762 6282 1.748493 GCATATTCGGCCCAAGTTCAA 59.252 47.619 0.00 0.00 0.00 2.69
5763 6283 2.479560 GCATATTCGGCCCAAGTTCAAC 60.480 50.000 0.00 0.00 0.00 3.18
5764 6284 2.871096 TATTCGGCCCAAGTTCAACT 57.129 45.000 0.00 0.00 0.00 3.16
5765 6285 2.871096 ATTCGGCCCAAGTTCAACTA 57.129 45.000 0.00 0.00 0.00 2.24
5766 6286 1.886886 TTCGGCCCAAGTTCAACTAC 58.113 50.000 0.00 0.00 0.00 2.73
5767 6287 1.053424 TCGGCCCAAGTTCAACTACT 58.947 50.000 0.00 0.00 0.00 2.57
5768 6288 1.418637 TCGGCCCAAGTTCAACTACTT 59.581 47.619 0.00 0.00 38.87 2.24
5775 6295 3.577805 AAGTTCAACTACTTGGGCTGT 57.422 42.857 0.00 0.00 37.00 4.40
5776 6296 3.577805 AGTTCAACTACTTGGGCTGTT 57.422 42.857 0.00 0.00 0.00 3.16
5777 6297 3.214328 AGTTCAACTACTTGGGCTGTTG 58.786 45.455 0.00 0.00 40.53 3.33
5778 6298 1.604604 TCAACTACTTGGGCTGTTGC 58.395 50.000 0.00 0.00 39.44 4.17
5779 6299 1.142870 TCAACTACTTGGGCTGTTGCT 59.857 47.619 0.00 0.00 39.44 3.91
5780 6300 1.267806 CAACTACTTGGGCTGTTGCTG 59.732 52.381 0.00 0.00 39.59 4.41
5781 6301 0.474184 ACTACTTGGGCTGTTGCTGT 59.526 50.000 0.00 0.00 39.59 4.40
5782 6302 1.133792 ACTACTTGGGCTGTTGCTGTT 60.134 47.619 0.00 0.00 39.59 3.16
5783 6303 2.105821 ACTACTTGGGCTGTTGCTGTTA 59.894 45.455 0.00 0.00 39.59 2.41
5784 6304 2.065899 ACTTGGGCTGTTGCTGTTAA 57.934 45.000 0.00 0.00 39.59 2.01
5785 6305 1.681264 ACTTGGGCTGTTGCTGTTAAC 59.319 47.619 0.00 0.00 39.59 2.01
5786 6306 1.680735 CTTGGGCTGTTGCTGTTAACA 59.319 47.619 8.28 8.28 38.17 2.41
5796 6316 5.971763 TGTTGCTGTTAACAGAATTTTGGT 58.028 33.333 34.43 0.00 46.59 3.67
5797 6317 7.101652 TGTTGCTGTTAACAGAATTTTGGTA 57.898 32.000 34.43 8.67 46.59 3.25
5798 6318 7.199766 TGTTGCTGTTAACAGAATTTTGGTAG 58.800 34.615 34.43 8.97 46.59 3.18
5799 6319 6.325919 TGCTGTTAACAGAATTTTGGTAGG 57.674 37.500 34.43 8.78 46.59 3.18
5800 6320 6.065374 TGCTGTTAACAGAATTTTGGTAGGA 58.935 36.000 34.43 6.50 46.59 2.94
5801 6321 6.719370 TGCTGTTAACAGAATTTTGGTAGGAT 59.281 34.615 34.43 0.00 46.59 3.24
5802 6322 7.094377 TGCTGTTAACAGAATTTTGGTAGGATC 60.094 37.037 34.43 13.99 46.59 3.36
5803 6323 7.121315 GCTGTTAACAGAATTTTGGTAGGATCT 59.879 37.037 34.43 0.00 46.59 2.75
5804 6324 8.934023 TGTTAACAGAATTTTGGTAGGATCTT 57.066 30.769 3.59 0.00 0.00 2.40
5805 6325 8.792633 TGTTAACAGAATTTTGGTAGGATCTTG 58.207 33.333 3.59 0.00 0.00 3.02
5806 6326 6.840780 AACAGAATTTTGGTAGGATCTTGG 57.159 37.500 0.57 0.00 0.00 3.61
5807 6327 5.264395 ACAGAATTTTGGTAGGATCTTGGG 58.736 41.667 0.57 0.00 0.00 4.12
5808 6328 4.098501 CAGAATTTTGGTAGGATCTTGGGC 59.901 45.833 0.00 0.00 0.00 5.36
5809 6329 2.525105 TTTTGGTAGGATCTTGGGCC 57.475 50.000 0.00 0.00 0.00 5.80
5810 6330 1.377690 TTTGGTAGGATCTTGGGCCA 58.622 50.000 0.00 0.00 0.00 5.36
5811 6331 1.377690 TTGGTAGGATCTTGGGCCAA 58.622 50.000 19.68 19.68 34.12 4.52
5812 6332 1.377690 TGGTAGGATCTTGGGCCAAA 58.622 50.000 21.28 11.68 0.00 3.28
5813 6333 1.005450 TGGTAGGATCTTGGGCCAAAC 59.995 52.381 21.28 13.86 0.00 2.93
5814 6334 1.379527 GTAGGATCTTGGGCCAAACG 58.620 55.000 21.28 9.90 0.00 3.60
5815 6335 1.065709 GTAGGATCTTGGGCCAAACGA 60.066 52.381 21.28 15.34 0.00 3.85
5816 6336 0.035056 AGGATCTTGGGCCAAACGAG 60.035 55.000 21.28 8.64 0.00 4.18
5817 6337 1.657751 GGATCTTGGGCCAAACGAGC 61.658 60.000 21.28 16.96 0.00 5.03
5818 6338 0.678048 GATCTTGGGCCAAACGAGCT 60.678 55.000 21.28 0.00 0.00 4.09
5819 6339 0.251341 ATCTTGGGCCAAACGAGCTT 60.251 50.000 21.28 0.00 0.00 3.74
5820 6340 0.398696 TCTTGGGCCAAACGAGCTTA 59.601 50.000 21.28 0.00 0.00 3.09
5821 6341 1.004277 TCTTGGGCCAAACGAGCTTAT 59.996 47.619 21.28 0.00 0.00 1.73
5822 6342 1.818674 CTTGGGCCAAACGAGCTTATT 59.181 47.619 21.28 0.00 0.00 1.40
5823 6343 2.791347 TGGGCCAAACGAGCTTATTA 57.209 45.000 2.13 0.00 0.00 0.98
5824 6344 3.290948 TGGGCCAAACGAGCTTATTAT 57.709 42.857 2.13 0.00 0.00 1.28
5825 6345 3.626930 TGGGCCAAACGAGCTTATTATT 58.373 40.909 2.13 0.00 0.00 1.40
5826 6346 4.783055 TGGGCCAAACGAGCTTATTATTA 58.217 39.130 2.13 0.00 0.00 0.98
5827 6347 5.194432 TGGGCCAAACGAGCTTATTATTAA 58.806 37.500 2.13 0.00 0.00 1.40
5828 6348 5.298276 TGGGCCAAACGAGCTTATTATTAAG 59.702 40.000 2.13 0.84 38.29 1.85
5829 6349 5.529800 GGGCCAAACGAGCTTATTATTAAGA 59.470 40.000 4.39 0.00 37.59 2.10
5830 6350 6.206829 GGGCCAAACGAGCTTATTATTAAGAT 59.793 38.462 4.39 2.13 37.59 2.40
5831 6351 7.255486 GGGCCAAACGAGCTTATTATTAAGATT 60.255 37.037 4.39 0.00 37.59 2.40
5832 6352 8.780249 GGCCAAACGAGCTTATTATTAAGATTA 58.220 33.333 0.00 0.00 37.59 1.75
5833 6353 9.813080 GCCAAACGAGCTTATTATTAAGATTAG 57.187 33.333 8.28 3.96 37.59 1.73
5842 6362 9.157104 GCTTATTATTAAGATTAGAGGACTGGC 57.843 37.037 8.28 0.00 37.59 4.85
5843 6363 9.660180 CTTATTATTAAGATTAGAGGACTGGCC 57.340 37.037 0.00 0.00 37.59 5.36
5844 6364 7.633018 ATTATTAAGATTAGAGGACTGGCCA 57.367 36.000 4.71 4.71 40.02 5.36
5845 6365 5.975988 ATTAAGATTAGAGGACTGGCCAA 57.024 39.130 7.01 0.00 40.02 4.52
5846 6366 5.772393 TTAAGATTAGAGGACTGGCCAAA 57.228 39.130 7.01 0.00 40.02 3.28
5847 6367 4.657814 AAGATTAGAGGACTGGCCAAAA 57.342 40.909 7.01 0.00 40.02 2.44
5848 6368 4.870021 AGATTAGAGGACTGGCCAAAAT 57.130 40.909 7.01 0.00 40.02 1.82
5849 6369 5.975988 AGATTAGAGGACTGGCCAAAATA 57.024 39.130 7.01 0.00 40.02 1.40
5891 6411 2.175202 ACTTCTTGCGGAGATCACTCT 58.825 47.619 0.00 0.00 42.28 3.24
5949 6469 1.891919 GCCACTTGTCGCAACCTGA 60.892 57.895 0.00 0.00 0.00 3.86
6020 6541 3.508840 CCGTGCGCCCAAATCTCC 61.509 66.667 4.18 0.00 0.00 3.71
6085 6607 6.426646 AACTAGATCCCATGTTGATAGGTC 57.573 41.667 0.00 0.00 0.00 3.85
6293 6830 4.735132 TCCGAAAGAGGCACGCCG 62.735 66.667 1.61 0.00 41.95 6.46
6434 6976 1.231958 CGGAAGCAAAACCGTGCCTA 61.232 55.000 0.00 0.00 46.14 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 4.023193 GGAAAACACTCGTTTCATCCACAT 60.023 41.667 4.62 0.00 44.65 3.21
13 14 3.314080 GGAAAACACTCGTTTCATCCACA 59.686 43.478 4.62 0.00 44.65 4.17
14 15 3.564225 AGGAAAACACTCGTTTCATCCAC 59.436 43.478 10.05 0.00 44.65 4.02
15 16 3.815809 AGGAAAACACTCGTTTCATCCA 58.184 40.909 10.05 0.00 44.65 3.41
17 18 5.205565 GTGAAGGAAAACACTCGTTTCATC 58.794 41.667 0.00 0.00 44.65 2.92
18 19 4.036380 GGTGAAGGAAAACACTCGTTTCAT 59.964 41.667 0.00 0.00 44.65 2.57
19 20 3.375922 GGTGAAGGAAAACACTCGTTTCA 59.624 43.478 0.00 0.00 44.65 2.69
20 21 3.545426 CGGTGAAGGAAAACACTCGTTTC 60.545 47.826 0.00 0.00 44.65 2.78
22 23 1.937899 CGGTGAAGGAAAACACTCGTT 59.062 47.619 0.00 0.00 37.22 3.85
23 24 1.137479 TCGGTGAAGGAAAACACTCGT 59.863 47.619 0.00 0.00 37.22 4.18
24 25 1.860676 TCGGTGAAGGAAAACACTCG 58.139 50.000 0.00 0.00 37.22 4.18
27 28 3.304458 GGTGATTCGGTGAAGGAAAACAC 60.304 47.826 0.00 0.00 35.77 3.32
30 31 3.216187 TGGTGATTCGGTGAAGGAAAA 57.784 42.857 0.00 0.00 0.00 2.29
34 35 2.009774 GACATGGTGATTCGGTGAAGG 58.990 52.381 0.00 0.00 0.00 3.46
36 37 1.349357 TGGACATGGTGATTCGGTGAA 59.651 47.619 0.00 0.00 0.00 3.18
41 42 1.065491 TCCCTTGGACATGGTGATTCG 60.065 52.381 0.00 0.00 0.00 3.34
54 55 2.060980 CCTCGGAGTCCTCCCTTGG 61.061 68.421 7.77 4.07 46.96 3.61
77 78 6.133356 AGGATTGTTTTCTTGTGGGAACTTA 58.867 36.000 0.00 0.00 0.00 2.24
83 87 9.586435 GATTTTATAGGATTGTTTTCTTGTGGG 57.414 33.333 0.00 0.00 0.00 4.61
97 101 9.652114 AGGAAATTTGCAGAGATTTTATAGGAT 57.348 29.630 12.54 0.00 0.00 3.24
98 102 9.125026 GAGGAAATTTGCAGAGATTTTATAGGA 57.875 33.333 12.54 0.00 0.00 2.94
102 106 7.398332 ACCAGAGGAAATTTGCAGAGATTTTAT 59.602 33.333 12.54 0.00 0.00 1.40
103 107 6.721208 ACCAGAGGAAATTTGCAGAGATTTTA 59.279 34.615 12.54 0.00 0.00 1.52
118 122 5.243730 GGTGATCATTTGAAACCAGAGGAAA 59.756 40.000 0.00 0.00 35.86 3.13
123 127 3.081061 CCGGTGATCATTTGAAACCAGA 58.919 45.455 0.00 0.00 35.66 3.86
124 128 2.415893 GCCGGTGATCATTTGAAACCAG 60.416 50.000 1.90 5.92 35.66 4.00
125 129 1.543802 GCCGGTGATCATTTGAAACCA 59.456 47.619 1.90 0.00 35.66 3.67
126 130 1.135112 GGCCGGTGATCATTTGAAACC 60.135 52.381 1.90 5.96 33.77 3.27
127 131 1.543802 TGGCCGGTGATCATTTGAAAC 59.456 47.619 1.90 0.00 0.00 2.78
128 132 1.916506 TGGCCGGTGATCATTTGAAA 58.083 45.000 1.90 0.00 0.00 2.69
129 133 1.916506 TTGGCCGGTGATCATTTGAA 58.083 45.000 1.90 0.00 0.00 2.69
130 134 1.818060 CTTTGGCCGGTGATCATTTGA 59.182 47.619 1.90 0.00 0.00 2.69
131 135 1.135024 CCTTTGGCCGGTGATCATTTG 60.135 52.381 1.90 0.00 0.00 2.32
135 139 0.608035 GTTCCTTTGGCCGGTGATCA 60.608 55.000 1.90 0.00 0.00 2.92
173 177 4.720902 CGGCATGGCTGTGGACCA 62.721 66.667 18.09 0.00 42.61 4.02
174 178 4.408821 TCGGCATGGCTGTGGACC 62.409 66.667 18.09 0.00 36.18 4.46
175 179 3.127533 GTCGGCATGGCTGTGGAC 61.128 66.667 18.09 12.90 36.18 4.02
176 180 4.408821 GGTCGGCATGGCTGTGGA 62.409 66.667 18.09 4.00 36.18 4.02
177 181 4.415150 AGGTCGGCATGGCTGTGG 62.415 66.667 18.09 1.33 36.18 4.17
178 182 2.821366 GAGGTCGGCATGGCTGTG 60.821 66.667 18.09 1.73 36.18 3.66
179 183 4.457496 CGAGGTCGGCATGGCTGT 62.457 66.667 18.09 0.00 36.18 4.40
180 184 3.451556 ATCGAGGTCGGCATGGCTG 62.452 63.158 18.09 10.93 40.29 4.85
181 185 3.157217 GATCGAGGTCGGCATGGCT 62.157 63.158 18.09 0.00 40.29 4.75
182 186 2.663188 GATCGAGGTCGGCATGGC 60.663 66.667 9.69 9.69 40.29 4.40
183 187 1.006805 GAGATCGAGGTCGGCATGG 60.007 63.158 0.00 0.00 40.29 3.66
184 188 1.371022 CGAGATCGAGGTCGGCATG 60.371 63.158 10.57 0.00 43.02 4.06
185 189 3.034878 CGAGATCGAGGTCGGCAT 58.965 61.111 10.57 0.00 43.02 4.40
247 251 2.854079 TAATGCGTGTCGTCGGGTCG 62.854 60.000 0.00 0.00 0.00 4.79
248 252 0.733566 TTAATGCGTGTCGTCGGGTC 60.734 55.000 0.00 0.00 0.00 4.46
249 253 0.319727 TTTAATGCGTGTCGTCGGGT 60.320 50.000 0.00 0.00 0.00 5.28
984 988 0.320334 CCGGCCAAAATTCAACCCAC 60.320 55.000 2.24 0.00 0.00 4.61
985 989 2.053618 CCGGCCAAAATTCAACCCA 58.946 52.632 2.24 0.00 0.00 4.51
988 1095 1.428448 GAAGCCGGCCAAAATTCAAC 58.572 50.000 26.15 0.00 0.00 3.18
1004 1111 1.160137 CTGAAAGGCTGAACCGGAAG 58.840 55.000 9.46 3.48 46.52 3.46
1005 1112 3.322514 CTGAAAGGCTGAACCGGAA 57.677 52.632 9.46 0.00 46.52 4.30
1041 1151 1.925185 GAAATCGGTTCTGCGAGGTAC 59.075 52.381 0.00 0.00 33.03 3.34
1047 1157 2.996621 AGAAGAAGAAATCGGTTCTGCG 59.003 45.455 3.45 0.00 46.36 5.18
1051 1161 4.998033 ACTCCAAGAAGAAGAAATCGGTTC 59.002 41.667 0.00 0.00 36.38 3.62
1052 1162 4.974399 ACTCCAAGAAGAAGAAATCGGTT 58.026 39.130 0.00 0.00 0.00 4.44
1054 1164 5.725362 ACTACTCCAAGAAGAAGAAATCGG 58.275 41.667 0.00 0.00 0.00 4.18
1059 1169 8.532819 GGAATTCTACTACTCCAAGAAGAAGAA 58.467 37.037 5.23 0.00 33.05 2.52
1060 1170 7.124448 GGGAATTCTACTACTCCAAGAAGAAGA 59.876 40.741 5.23 0.00 33.05 2.87
1061 1171 7.125053 AGGGAATTCTACTACTCCAAGAAGAAG 59.875 40.741 5.23 0.00 33.05 2.85
1077 1187 3.385115 GGAGAACAGGGAGGGAATTCTA 58.615 50.000 5.23 0.00 29.85 2.10
1089 1207 1.203523 CAGAGGAGAACGGAGAACAGG 59.796 57.143 0.00 0.00 0.00 4.00
1093 1211 2.093973 GCAATCAGAGGAGAACGGAGAA 60.094 50.000 0.00 0.00 0.00 2.87
1094 1212 1.478510 GCAATCAGAGGAGAACGGAGA 59.521 52.381 0.00 0.00 0.00 3.71
1095 1213 1.480137 AGCAATCAGAGGAGAACGGAG 59.520 52.381 0.00 0.00 0.00 4.63
1096 1214 1.478510 GAGCAATCAGAGGAGAACGGA 59.521 52.381 0.00 0.00 0.00 4.69
1097 1215 1.205655 TGAGCAATCAGAGGAGAACGG 59.794 52.381 0.00 0.00 0.00 4.44
1098 1216 2.662006 TGAGCAATCAGAGGAGAACG 57.338 50.000 0.00 0.00 0.00 3.95
1099 1217 4.573900 TCTTTGAGCAATCAGAGGAGAAC 58.426 43.478 0.00 0.00 0.00 3.01
1100 1218 4.897509 TCTTTGAGCAATCAGAGGAGAA 57.102 40.909 0.00 0.00 0.00 2.87
1240 1358 2.645192 CCGGGTGCCACCAAAATCC 61.645 63.158 17.22 0.00 41.02 3.01
1270 1388 4.353737 CACAAAATACAAGATCATGGCCG 58.646 43.478 2.59 0.00 0.00 6.13
1328 1446 3.490249 CCGAAGAAAAAGGTGTTTGGACC 60.490 47.826 0.00 0.00 36.09 4.46
1348 1466 1.742324 TAGCAGAGGCAGAGCATCCG 61.742 60.000 0.00 0.00 40.43 4.18
1359 1483 1.830408 CGGAGGGGACTAGCAGAGG 60.830 68.421 0.00 0.00 44.43 3.69
1360 1484 3.849064 CGGAGGGGACTAGCAGAG 58.151 66.667 0.00 0.00 44.43 3.35
1707 1831 0.596577 TGTGGTACGAGCAGACTGAC 59.403 55.000 6.65 0.00 0.00 3.51
1727 1851 1.438651 TCAATCGCCACTACACAAGC 58.561 50.000 0.00 0.00 0.00 4.01
1736 1860 3.181397 CAACCAATCAATCAATCGCCAC 58.819 45.455 0.00 0.00 0.00 5.01
1754 1878 1.866601 GCACCAAAGCAATCAACCAAC 59.133 47.619 0.00 0.00 0.00 3.77
1864 1996 1.681538 TTTCGCTTGGTTGCTTGGTA 58.318 45.000 0.00 0.00 0.00 3.25
1888 2020 7.226441 TCAGAGAACTCCATGAAATTCTTCAA 58.774 34.615 0.00 0.00 44.64 2.69
1903 2035 6.708054 TGGAGTTCAGAAAATTCAGAGAACTC 59.292 38.462 26.74 26.74 46.95 3.01
1992 2169 4.836825 TCTTGTAGCTCCTGGAAATTCAG 58.163 43.478 0.00 0.00 34.70 3.02
1993 2170 4.908601 TCTTGTAGCTCCTGGAAATTCA 57.091 40.909 0.00 0.00 0.00 2.57
1994 2171 5.067023 CCATTCTTGTAGCTCCTGGAAATTC 59.933 44.000 0.00 0.00 0.00 2.17
1995 2172 4.952335 CCATTCTTGTAGCTCCTGGAAATT 59.048 41.667 0.00 0.00 0.00 1.82
1996 2173 4.530875 CCATTCTTGTAGCTCCTGGAAAT 58.469 43.478 0.00 0.00 0.00 2.17
1997 2174 3.308402 CCCATTCTTGTAGCTCCTGGAAA 60.308 47.826 0.00 0.00 0.00 3.13
1998 2175 2.239654 CCCATTCTTGTAGCTCCTGGAA 59.760 50.000 0.00 0.00 0.00 3.53
1999 2176 1.839994 CCCATTCTTGTAGCTCCTGGA 59.160 52.381 0.00 0.00 0.00 3.86
2000 2177 1.561542 ACCCATTCTTGTAGCTCCTGG 59.438 52.381 0.00 0.00 0.00 4.45
2016 2193 1.152860 ATCGTGCCACACAAACCCA 60.153 52.632 0.00 0.00 33.40 4.51
2019 2196 0.163788 CGAGATCGTGCCACACAAAC 59.836 55.000 0.00 0.00 33.40 2.93
2022 2199 2.432456 GCGAGATCGTGCCACACA 60.432 61.111 3.94 0.00 42.22 3.72
2230 2412 2.353011 CCATGGTGAAATTGACCTGCAC 60.353 50.000 2.57 0.00 34.26 4.57
2357 2539 1.449246 CCGAGGCTTGGCTTCTCTG 60.449 63.158 8.12 0.00 32.35 3.35
2584 2766 3.001414 CTCTTCTTGTGCATCTCAGGTG 58.999 50.000 0.00 0.00 0.00 4.00
2597 2779 3.657015 TCAGTGCTCAGACTCTTCTTG 57.343 47.619 0.00 0.00 0.00 3.02
2726 2908 1.491274 TTGAGGCCATGCTCAGTGGA 61.491 55.000 5.01 0.00 39.12 4.02
2816 2998 3.118992 CGACAATGTCATCCTCCTCAAGA 60.119 47.826 14.24 0.00 32.09 3.02
2822 3004 1.009829 GCACGACAATGTCATCCTCC 58.990 55.000 14.24 0.00 32.09 4.30
2909 3091 3.181483 GGCCAATGTTGTCATGATCCTTC 60.181 47.826 0.00 0.00 34.19 3.46
2975 3157 2.998667 CGAGAAATCAGCGGCGAC 59.001 61.111 12.98 1.23 0.00 5.19
3152 3334 7.903431 CACTGAATTTACCTTTCTGCGTTATAC 59.097 37.037 0.00 0.00 0.00 1.47
3155 3337 5.334569 GCACTGAATTTACCTTTCTGCGTTA 60.335 40.000 0.00 0.00 0.00 3.18
3158 3340 3.189287 AGCACTGAATTTACCTTTCTGCG 59.811 43.478 0.00 0.00 32.53 5.18
3186 3371 8.376972 CTATTTAAGCACAACCGAAATGTAAC 57.623 34.615 0.00 0.00 0.00 2.50
3223 3408 9.705290 TTATCTAAGCACAAAAGGGAAAATTTC 57.295 29.630 0.00 0.00 0.00 2.17
3226 3411 8.422577 AGTTATCTAAGCACAAAAGGGAAAAT 57.577 30.769 0.00 0.00 0.00 1.82
3256 3441 8.491134 TGGCATAGGTCAAGTAATACAAATAGT 58.509 33.333 0.00 0.00 0.00 2.12
3265 3450 3.523564 ACCAGTGGCATAGGTCAAGTAAT 59.476 43.478 9.78 0.00 0.00 1.89
3273 3458 4.650972 TTTCTTAACCAGTGGCATAGGT 57.349 40.909 9.78 7.87 37.20 3.08
3274 3459 6.263168 CCTATTTTCTTAACCAGTGGCATAGG 59.737 42.308 9.78 3.70 0.00 2.57
3280 3465 7.145323 CACAAACCTATTTTCTTAACCAGTGG 58.855 38.462 7.91 7.91 0.00 4.00
3289 3474 8.306761 CAGAATTAGCCACAAACCTATTTTCTT 58.693 33.333 0.00 0.00 0.00 2.52
3296 3481 6.170506 CACTACAGAATTAGCCACAAACCTA 58.829 40.000 0.00 0.00 0.00 3.08
3299 3484 4.760204 ACCACTACAGAATTAGCCACAAAC 59.240 41.667 0.00 0.00 0.00 2.93
3303 3514 5.731591 AGTAACCACTACAGAATTAGCCAC 58.268 41.667 0.00 0.00 31.45 5.01
3319 3530 8.205512 TGTAAAGTATGAACTGTCAAGTAACCA 58.794 33.333 0.00 0.00 37.30 3.67
3324 3535 8.157476 AGGATTGTAAAGTATGAACTGTCAAGT 58.843 33.333 0.00 0.00 37.30 3.16
3325 3536 8.553459 AGGATTGTAAAGTATGAACTGTCAAG 57.447 34.615 0.00 0.00 37.30 3.02
3341 3552 9.432982 AGGGAAAAATGCATTATAGGATTGTAA 57.567 29.630 13.39 0.00 29.55 2.41
3342 3553 9.432982 AAGGGAAAAATGCATTATAGGATTGTA 57.567 29.630 13.39 0.00 29.55 2.41
3343 3554 7.919385 AGGGAAAAATGCATTATAGGATTGT 57.081 32.000 13.39 0.00 29.55 2.71
3344 3555 8.206189 ACAAGGGAAAAATGCATTATAGGATTG 58.794 33.333 13.39 15.40 29.55 2.67
3345 3556 8.206189 CACAAGGGAAAAATGCATTATAGGATT 58.794 33.333 13.39 0.00 0.00 3.01
3346 3557 7.345392 ACACAAGGGAAAAATGCATTATAGGAT 59.655 33.333 13.39 0.00 0.00 3.24
3347 3558 6.667414 ACACAAGGGAAAAATGCATTATAGGA 59.333 34.615 13.39 0.00 0.00 2.94
3348 3559 6.757947 CACACAAGGGAAAAATGCATTATAGG 59.242 38.462 13.39 0.34 0.00 2.57
3349 3560 7.322664 ACACACAAGGGAAAAATGCATTATAG 58.677 34.615 13.39 0.23 0.00 1.31
3350 3561 7.238486 ACACACAAGGGAAAAATGCATTATA 57.762 32.000 13.39 0.00 0.00 0.98
3351 3562 6.112927 ACACACAAGGGAAAAATGCATTAT 57.887 33.333 13.39 4.75 0.00 1.28
3352 3563 5.543507 ACACACAAGGGAAAAATGCATTA 57.456 34.783 13.39 0.00 0.00 1.90
3353 3564 4.420522 ACACACAAGGGAAAAATGCATT 57.579 36.364 5.99 5.99 0.00 3.56
3354 3565 4.420522 AACACACAAGGGAAAAATGCAT 57.579 36.364 0.00 0.00 0.00 3.96
3355 3566 3.902881 AACACACAAGGGAAAAATGCA 57.097 38.095 0.00 0.00 0.00 3.96
3356 3567 5.353956 AGAAAAACACACAAGGGAAAAATGC 59.646 36.000 0.00 0.00 0.00 3.56
3357 3568 6.371271 ACAGAAAAACACACAAGGGAAAAATG 59.629 34.615 0.00 0.00 0.00 2.32
3358 3569 6.472016 ACAGAAAAACACACAAGGGAAAAAT 58.528 32.000 0.00 0.00 0.00 1.82
3359 3570 5.859495 ACAGAAAAACACACAAGGGAAAAA 58.141 33.333 0.00 0.00 0.00 1.94
3360 3571 5.245075 AGACAGAAAAACACACAAGGGAAAA 59.755 36.000 0.00 0.00 0.00 2.29
3361 3572 4.770010 AGACAGAAAAACACACAAGGGAAA 59.230 37.500 0.00 0.00 0.00 3.13
3362 3573 4.340617 AGACAGAAAAACACACAAGGGAA 58.659 39.130 0.00 0.00 0.00 3.97
3363 3574 3.945285 GAGACAGAAAAACACACAAGGGA 59.055 43.478 0.00 0.00 0.00 4.20
3364 3575 3.694072 TGAGACAGAAAAACACACAAGGG 59.306 43.478 0.00 0.00 0.00 3.95
3365 3576 4.635765 TCTGAGACAGAAAAACACACAAGG 59.364 41.667 0.00 0.00 37.57 3.61
3366 3577 5.801350 TCTGAGACAGAAAAACACACAAG 57.199 39.130 0.00 0.00 37.57 3.16
3377 3588 6.425114 GCTGTCAAGTATTTTCTGAGACAGAA 59.575 38.462 20.08 9.67 46.93 3.02
3378 3589 5.928839 GCTGTCAAGTATTTTCTGAGACAGA 59.071 40.000 20.08 0.00 44.62 3.41
3426 3637 5.927281 ATCAAATCTAAGTTGGCATGCTT 57.073 34.783 18.92 6.39 0.00 3.91
3480 3691 7.306457 CGCTGACATCTCATGACTACAAAATAG 60.306 40.741 0.00 0.00 0.00 1.73
3483 3694 4.627035 CGCTGACATCTCATGACTACAAAA 59.373 41.667 0.00 0.00 0.00 2.44
3502 3713 7.113965 GCTTCAATATCCATATTTCAAACGCTG 59.886 37.037 0.00 0.00 30.91 5.18
3595 3806 1.830836 GAGCCCAGCCTACCCTAAC 59.169 63.158 0.00 0.00 0.00 2.34
3616 3827 6.538742 TGGCACTTTTCCTATCTCTAAATTCG 59.461 38.462 0.00 0.00 0.00 3.34
3637 3848 7.672240 TCATAAAATCTATATGGTACGTGGCA 58.328 34.615 0.00 0.00 32.73 4.92
3686 3992 1.768870 AGTCCGGGGATCACTAAATGG 59.231 52.381 0.00 0.00 0.00 3.16
3698 4004 1.526455 CCTCGTCTAGAGTCCGGGG 60.526 68.421 5.81 5.81 45.44 5.73
3702 4008 1.404843 AATGGCCTCGTCTAGAGTCC 58.595 55.000 3.32 0.00 44.95 3.85
3712 4018 1.468054 GCTAACTGCAAAATGGCCTCG 60.468 52.381 3.32 0.00 42.31 4.63
3750 4056 1.726853 ACGCAGGACATGAACTTAGC 58.273 50.000 0.00 0.00 0.00 3.09
3751 4057 2.159653 GCAACGCAGGACATGAACTTAG 60.160 50.000 0.00 0.00 0.00 2.18
3752 4058 1.804151 GCAACGCAGGACATGAACTTA 59.196 47.619 0.00 0.00 0.00 2.24
3753 4059 0.593128 GCAACGCAGGACATGAACTT 59.407 50.000 0.00 0.00 0.00 2.66
3754 4060 1.237285 GGCAACGCAGGACATGAACT 61.237 55.000 0.00 0.00 0.00 3.01
3755 4061 1.210155 GGCAACGCAGGACATGAAC 59.790 57.895 0.00 0.00 0.00 3.18
3756 4062 0.608856 ATGGCAACGCAGGACATGAA 60.609 50.000 0.00 0.00 42.51 2.57
3767 4073 3.367743 AGCTGCACCATGGCAACG 61.368 61.111 13.04 0.00 44.40 4.10
3793 4099 5.388225 ACTTTGTTATTTTGTTTGCTGCG 57.612 34.783 0.00 0.00 0.00 5.18
3795 4101 7.042791 CCCTGTACTTTGTTATTTTGTTTGCTG 60.043 37.037 0.00 0.00 0.00 4.41
3831 4220 0.250770 GCCCTGACCTCGGTTTTCTT 60.251 55.000 0.00 0.00 0.00 2.52
3833 4222 0.322546 ATGCCCTGACCTCGGTTTTC 60.323 55.000 0.00 0.00 0.00 2.29
3837 4226 2.671070 CAATGCCCTGACCTCGGT 59.329 61.111 0.00 0.00 0.00 4.69
3838 4227 2.825836 GCAATGCCCTGACCTCGG 60.826 66.667 0.00 0.00 0.00 4.63
3839 4228 1.243342 TTTGCAATGCCCTGACCTCG 61.243 55.000 1.53 0.00 0.00 4.63
3880 4269 5.003496 GCAAAAGTAAAATTTCCGATCTCGC 59.997 40.000 0.00 0.00 38.18 5.03
3881 4270 5.225129 CGCAAAAGTAAAATTTCCGATCTCG 59.775 40.000 0.00 0.00 39.44 4.04
3924 4316 1.987770 GCATCGCATTGTCCAAAACAG 59.012 47.619 0.00 0.00 39.58 3.16
3957 4349 1.335810 CTACGTATGGCGCTGTTCCTA 59.664 52.381 7.64 0.00 46.11 2.94
3966 4358 0.810031 AAGGCAAGCTACGTATGGCG 60.810 55.000 13.53 0.00 43.66 5.69
3974 4366 2.730550 ATTTGTGCAAGGCAAGCTAC 57.269 45.000 0.00 1.11 41.47 3.58
4035 4428 3.487120 ACTTTCGGTAACTCCTGCTTT 57.513 42.857 0.00 0.00 0.00 3.51
4049 4442 6.735130 AGAAAATTGTCACCCTTTACTTTCG 58.265 36.000 0.00 0.00 0.00 3.46
4145 4553 2.867109 ACAAGTGAAGCTACTGCCAT 57.133 45.000 0.00 0.00 40.80 4.40
4154 4562 2.294233 TCTGGCAATGAACAAGTGAAGC 59.706 45.455 0.00 0.00 0.00 3.86
4175 4583 1.066929 TGACATATGCTCGTGCTGTGT 60.067 47.619 11.19 11.86 40.48 3.72
4180 4588 2.477825 ACATCTGACATATGCTCGTGC 58.522 47.619 1.58 1.71 40.20 5.34
4199 4607 5.972107 TGTAGTGTGGTCCTCTAAACTAC 57.028 43.478 10.82 10.82 40.11 2.73
4204 4612 2.500098 GCCATGTAGTGTGGTCCTCTAA 59.500 50.000 0.00 0.00 39.01 2.10
4223 4631 2.883267 AAGAATCTCGCCAGCCAGCC 62.883 60.000 0.00 0.00 0.00 4.85
4266 4674 6.695429 TGAAGCAATAGGATATCTGCTACTG 58.305 40.000 15.30 5.62 44.18 2.74
4298 4706 3.412386 AGGATAGCAACAACCACTGTTC 58.588 45.455 0.00 0.00 45.50 3.18
4306 4714 7.334421 TGACAATTCTTCTAGGATAGCAACAAC 59.666 37.037 0.00 0.00 38.99 3.32
4362 4778 2.048877 GCGCTGGCATTTGCAGTT 60.049 55.556 0.00 0.00 44.36 3.16
4380 4796 3.279875 GGGATCGGCGCATGAACC 61.280 66.667 10.83 14.52 0.00 3.62
4430 4846 7.336931 TGCTACCTGAATTCTTTGGATTCTAAC 59.663 37.037 15.89 0.25 0.00 2.34
4448 4864 6.128282 ACAAAAATTCAGACGTATGCTACCTG 60.128 38.462 5.03 0.00 0.00 4.00
4502 4918 2.291741 CTGCCTCTGAACTGAAACAACC 59.708 50.000 0.00 0.00 0.00 3.77
4552 4968 7.256286 ACTCGCATGGTAAGTAAGTAAGTAAG 58.744 38.462 0.00 0.00 0.00 2.34
4553 4969 7.161773 ACTCGCATGGTAAGTAAGTAAGTAA 57.838 36.000 0.00 0.00 0.00 2.24
4554 4970 6.764308 ACTCGCATGGTAAGTAAGTAAGTA 57.236 37.500 0.00 0.00 0.00 2.24
4555 4971 5.656213 ACTCGCATGGTAAGTAAGTAAGT 57.344 39.130 0.00 0.00 0.00 2.24
4589 5005 5.185635 ACCACCACATGAATGAATTAACTGG 59.814 40.000 0.00 0.00 0.00 4.00
4627 5043 1.006805 CCCTGCGAGATCGTCCATC 60.007 63.158 3.94 0.00 42.22 3.51
4630 5046 4.593864 GCCCCTGCGAGATCGTCC 62.594 72.222 3.94 0.00 42.22 4.79
4680 5096 1.134367 CGCGGTACCATCTCTTCTTCA 59.866 52.381 13.54 0.00 0.00 3.02
4725 5141 3.012518 GTGCAGCAAGGATGACAGTATT 58.987 45.455 0.00 0.00 0.00 1.89
4776 5192 2.430610 GCTCCTCCTGCAGTCCGAT 61.431 63.158 13.81 0.00 0.00 4.18
4880 5296 1.074752 CTTGACGAGCTTCTCCTTGC 58.925 55.000 0.00 0.00 0.00 4.01
4926 5342 2.254546 TACCCAGTGCAGTGACAAAG 57.745 50.000 23.34 5.45 0.00 2.77
4955 5371 0.250234 GCAAGGGGGAAATCAAAGCC 59.750 55.000 0.00 0.00 0.00 4.35
4963 5379 1.888826 CGGTATGTTGCAAGGGGGAAA 60.889 52.381 0.00 0.00 0.00 3.13
4964 5380 0.322997 CGGTATGTTGCAAGGGGGAA 60.323 55.000 0.00 0.00 0.00 3.97
4966 5382 0.322997 TTCGGTATGTTGCAAGGGGG 60.323 55.000 0.00 0.00 0.00 5.40
4970 5388 2.614057 GGGATCTTCGGTATGTTGCAAG 59.386 50.000 0.00 0.00 0.00 4.01
4981 5399 2.543687 ATATCGCGCGGGATCTTCGG 62.544 60.000 37.44 0.00 0.00 4.30
5005 5423 5.629020 CACAACAAAAACCTCAATACCATCG 59.371 40.000 0.00 0.00 0.00 3.84
5061 5479 2.880879 CACTGGATCACGACGCGG 60.881 66.667 12.47 0.00 0.00 6.46
5161 5579 8.552865 CATCATCATCTAAAGAAGCAAAGAGAG 58.447 37.037 0.00 0.00 0.00 3.20
5181 5599 3.867493 TCGTCAGCAACTCATTCATCATC 59.133 43.478 0.00 0.00 0.00 2.92
5182 5600 3.865446 TCGTCAGCAACTCATTCATCAT 58.135 40.909 0.00 0.00 0.00 2.45
5183 5601 3.256558 CTCGTCAGCAACTCATTCATCA 58.743 45.455 0.00 0.00 0.00 3.07
5234 5655 4.392138 ACGCCTGAAGAATAAAGCTAACAC 59.608 41.667 0.00 0.00 0.00 3.32
5274 5711 8.614469 AATTTCAACAAAACCAAAGAACAGAA 57.386 26.923 0.00 0.00 0.00 3.02
5290 5727 7.012894 ACTGATAACGAGGACAAAATTTCAACA 59.987 33.333 0.00 0.00 0.00 3.33
5337 5774 3.440173 ACTGATAACGAGCACAAAATGGG 59.560 43.478 0.00 0.00 0.00 4.00
5356 5793 9.559958 CAGATTAAACCATAAAGCTTACAACTG 57.440 33.333 0.00 0.00 0.00 3.16
5362 5799 7.938140 AGCACAGATTAAACCATAAAGCTTA 57.062 32.000 0.00 0.00 0.00 3.09
5389 5846 6.260936 ACACCTATTAGCACACATAATTCTGC 59.739 38.462 0.00 0.00 0.00 4.26
5436 5893 3.354089 AACGTGCATTTCCTGTTTCTG 57.646 42.857 0.00 0.00 0.00 3.02
5464 5922 6.028146 ACACATGCATTTCTTATGCTGAAA 57.972 33.333 10.67 0.00 44.79 2.69
5541 6002 6.450545 GGGACGGTCTACTTATTATTGTACC 58.549 44.000 8.23 0.00 0.00 3.34
5543 6004 6.655078 GGGGACGGTCTACTTATTATTGTA 57.345 41.667 8.23 0.00 0.00 2.41
5544 6005 5.541953 GGGGACGGTCTACTTATTATTGT 57.458 43.478 8.23 0.00 0.00 2.71
5576 6037 9.745880 CTGCTTTCTTCGGTCTACTTATTATTA 57.254 33.333 0.00 0.00 0.00 0.98
5620 6081 4.858850 TGGCCTCATGACATAACTTTCAT 58.141 39.130 3.32 0.00 32.44 2.57
5649 6110 5.036737 AGCAACAACGAAAAATCTTCAGTG 58.963 37.500 0.00 0.00 0.00 3.66
5652 6113 6.096036 TCAAAGCAACAACGAAAAATCTTCA 58.904 32.000 0.00 0.00 0.00 3.02
5657 6118 6.959671 TTCTTCAAAGCAACAACGAAAAAT 57.040 29.167 0.00 0.00 0.00 1.82
5661 6122 4.799678 TGTTTCTTCAAAGCAACAACGAA 58.200 34.783 5.65 0.00 38.79 3.85
5682 6143 8.896744 TGAGAAAACTTATAGGAGCATTTCATG 58.103 33.333 0.00 0.00 32.51 3.07
5691 6152 5.814705 CCTGTGCTGAGAAAACTTATAGGAG 59.185 44.000 0.00 0.00 0.00 3.69
5696 6157 6.491403 ACATTTCCTGTGCTGAGAAAACTTAT 59.509 34.615 0.00 0.00 36.48 1.73
5740 6260 2.024414 GAACTTGGGCCGAATATGCTT 58.976 47.619 0.00 0.00 0.00 3.91
5741 6261 1.064758 TGAACTTGGGCCGAATATGCT 60.065 47.619 0.00 0.00 0.00 3.79
5742 6262 1.388547 TGAACTTGGGCCGAATATGC 58.611 50.000 0.00 0.00 0.00 3.14
5743 6263 3.016736 AGTTGAACTTGGGCCGAATATG 58.983 45.455 0.00 0.00 0.00 1.78
5744 6264 3.366052 AGTTGAACTTGGGCCGAATAT 57.634 42.857 0.00 0.00 0.00 1.28
5745 6265 2.871096 AGTTGAACTTGGGCCGAATA 57.129 45.000 0.00 0.00 0.00 1.75
5746 6266 2.039879 AGTAGTTGAACTTGGGCCGAAT 59.960 45.455 1.97 0.00 0.00 3.34
5747 6267 1.418637 AGTAGTTGAACTTGGGCCGAA 59.581 47.619 1.97 0.00 0.00 4.30
5748 6268 1.053424 AGTAGTTGAACTTGGGCCGA 58.947 50.000 1.97 0.00 0.00 5.54
5749 6269 1.892209 AAGTAGTTGAACTTGGGCCG 58.108 50.000 1.97 0.00 38.28 6.13
5755 6275 3.577805 ACAGCCCAAGTAGTTGAACTT 57.422 42.857 12.04 0.00 40.33 2.66
5756 6276 3.214328 CAACAGCCCAAGTAGTTGAACT 58.786 45.455 12.04 2.37 42.87 3.01
5757 6277 2.287608 GCAACAGCCCAAGTAGTTGAAC 60.288 50.000 12.04 3.40 42.87 3.18
5758 6278 1.953686 GCAACAGCCCAAGTAGTTGAA 59.046 47.619 12.04 0.00 42.87 2.69
5759 6279 1.142870 AGCAACAGCCCAAGTAGTTGA 59.857 47.619 12.04 0.00 42.87 3.18
5760 6280 1.267806 CAGCAACAGCCCAAGTAGTTG 59.732 52.381 3.09 3.09 43.04 3.16
5761 6281 1.133792 ACAGCAACAGCCCAAGTAGTT 60.134 47.619 0.00 0.00 0.00 2.24
5762 6282 0.474184 ACAGCAACAGCCCAAGTAGT 59.526 50.000 0.00 0.00 0.00 2.73
5763 6283 1.609208 AACAGCAACAGCCCAAGTAG 58.391 50.000 0.00 0.00 0.00 2.57
5764 6284 2.882137 GTTAACAGCAACAGCCCAAGTA 59.118 45.455 0.00 0.00 0.00 2.24
5765 6285 1.681264 GTTAACAGCAACAGCCCAAGT 59.319 47.619 0.00 0.00 0.00 3.16
5766 6286 1.680735 TGTTAACAGCAACAGCCCAAG 59.319 47.619 3.59 0.00 33.55 3.61
5767 6287 1.680735 CTGTTAACAGCAACAGCCCAA 59.319 47.619 22.03 0.00 46.37 4.12
5768 6288 1.317613 CTGTTAACAGCAACAGCCCA 58.682 50.000 22.03 0.00 46.37 5.36
5773 6293 5.971763 ACCAAAATTCTGTTAACAGCAACA 58.028 33.333 27.49 10.36 43.46 3.33
5774 6294 6.640907 CCTACCAAAATTCTGTTAACAGCAAC 59.359 38.462 27.49 0.00 43.46 4.17
5775 6295 6.547880 TCCTACCAAAATTCTGTTAACAGCAA 59.452 34.615 27.49 21.60 43.46 3.91
5776 6296 6.065374 TCCTACCAAAATTCTGTTAACAGCA 58.935 36.000 27.49 19.56 43.46 4.41
5777 6297 6.569179 TCCTACCAAAATTCTGTTAACAGC 57.431 37.500 27.49 0.00 43.46 4.40
5778 6298 8.567285 AGATCCTACCAAAATTCTGTTAACAG 57.433 34.615 26.60 26.60 45.08 3.16
5779 6299 8.792633 CAAGATCCTACCAAAATTCTGTTAACA 58.207 33.333 8.28 8.28 0.00 2.41
5780 6300 8.244113 CCAAGATCCTACCAAAATTCTGTTAAC 58.756 37.037 0.00 0.00 0.00 2.01
5781 6301 7.396055 CCCAAGATCCTACCAAAATTCTGTTAA 59.604 37.037 0.00 0.00 0.00 2.01
5782 6302 6.889722 CCCAAGATCCTACCAAAATTCTGTTA 59.110 38.462 0.00 0.00 0.00 2.41
5783 6303 5.716703 CCCAAGATCCTACCAAAATTCTGTT 59.283 40.000 0.00 0.00 0.00 3.16
5784 6304 5.264395 CCCAAGATCCTACCAAAATTCTGT 58.736 41.667 0.00 0.00 0.00 3.41
5785 6305 4.098501 GCCCAAGATCCTACCAAAATTCTG 59.901 45.833 0.00 0.00 0.00 3.02
5786 6306 4.281657 GCCCAAGATCCTACCAAAATTCT 58.718 43.478 0.00 0.00 0.00 2.40
5787 6307 3.384789 GGCCCAAGATCCTACCAAAATTC 59.615 47.826 0.00 0.00 0.00 2.17
5788 6308 3.245948 TGGCCCAAGATCCTACCAAAATT 60.246 43.478 0.00 0.00 0.00 1.82
5789 6309 2.314549 TGGCCCAAGATCCTACCAAAAT 59.685 45.455 0.00 0.00 0.00 1.82
5790 6310 1.713647 TGGCCCAAGATCCTACCAAAA 59.286 47.619 0.00 0.00 0.00 2.44
5791 6311 1.377690 TGGCCCAAGATCCTACCAAA 58.622 50.000 0.00 0.00 0.00 3.28
5792 6312 1.377690 TTGGCCCAAGATCCTACCAA 58.622 50.000 0.00 0.00 34.91 3.67
5793 6313 1.005450 GTTTGGCCCAAGATCCTACCA 59.995 52.381 0.00 0.00 0.00 3.25
5794 6314 1.763968 GTTTGGCCCAAGATCCTACC 58.236 55.000 0.00 0.00 0.00 3.18
5795 6315 1.065709 TCGTTTGGCCCAAGATCCTAC 60.066 52.381 0.00 0.00 0.00 3.18
5796 6316 1.209504 CTCGTTTGGCCCAAGATCCTA 59.790 52.381 0.00 0.00 0.00 2.94
5797 6317 0.035056 CTCGTTTGGCCCAAGATCCT 60.035 55.000 0.00 0.00 0.00 3.24
5798 6318 1.657751 GCTCGTTTGGCCCAAGATCC 61.658 60.000 0.00 0.00 0.00 3.36
5799 6319 0.678048 AGCTCGTTTGGCCCAAGATC 60.678 55.000 0.00 0.00 0.00 2.75
5800 6320 0.251341 AAGCTCGTTTGGCCCAAGAT 60.251 50.000 0.00 0.00 0.00 2.40
5801 6321 0.398696 TAAGCTCGTTTGGCCCAAGA 59.601 50.000 0.00 0.00 0.00 3.02
5802 6322 1.463674 ATAAGCTCGTTTGGCCCAAG 58.536 50.000 0.00 0.00 0.00 3.61
5803 6323 1.917872 AATAAGCTCGTTTGGCCCAA 58.082 45.000 0.00 0.00 0.00 4.12
5804 6324 2.791347 TAATAAGCTCGTTTGGCCCA 57.209 45.000 0.00 0.00 0.00 5.36
5805 6325 5.529800 TCTTAATAATAAGCTCGTTTGGCCC 59.470 40.000 0.00 0.00 38.73 5.80
5806 6326 6.613755 TCTTAATAATAAGCTCGTTTGGCC 57.386 37.500 0.00 0.00 38.73 5.36
5807 6327 9.813080 CTAATCTTAATAATAAGCTCGTTTGGC 57.187 33.333 0.00 0.00 38.73 4.52
5816 6336 9.157104 GCCAGTCCTCTAATCTTAATAATAAGC 57.843 37.037 0.00 0.00 38.73 3.09
5817 6337 9.660180 GGCCAGTCCTCTAATCTTAATAATAAG 57.340 37.037 0.00 0.00 39.97 1.73
5818 6338 9.166222 TGGCCAGTCCTCTAATCTTAATAATAA 57.834 33.333 0.00 0.00 35.26 1.40
5819 6339 8.736097 TGGCCAGTCCTCTAATCTTAATAATA 57.264 34.615 0.00 0.00 35.26 0.98
5820 6340 7.633018 TGGCCAGTCCTCTAATCTTAATAAT 57.367 36.000 0.00 0.00 35.26 1.28
5821 6341 7.446106 TTGGCCAGTCCTCTAATCTTAATAA 57.554 36.000 5.11 0.00 35.26 1.40
5822 6342 7.446106 TTTGGCCAGTCCTCTAATCTTAATA 57.554 36.000 5.11 0.00 35.26 0.98
5823 6343 5.975988 TTGGCCAGTCCTCTAATCTTAAT 57.024 39.130 5.11 0.00 35.26 1.40
5824 6344 5.772393 TTTGGCCAGTCCTCTAATCTTAA 57.228 39.130 5.11 0.00 35.26 1.85
5825 6345 5.772393 TTTTGGCCAGTCCTCTAATCTTA 57.228 39.130 5.11 0.00 35.26 2.10
5826 6346 4.657814 TTTTGGCCAGTCCTCTAATCTT 57.342 40.909 5.11 0.00 35.26 2.40
5827 6347 4.870021 ATTTTGGCCAGTCCTCTAATCT 57.130 40.909 5.11 0.00 35.26 2.40
5828 6348 4.511826 CGTATTTTGGCCAGTCCTCTAATC 59.488 45.833 5.11 0.00 35.26 1.75
5829 6349 4.163458 TCGTATTTTGGCCAGTCCTCTAAT 59.837 41.667 5.11 1.59 35.26 1.73
5830 6350 3.516300 TCGTATTTTGGCCAGTCCTCTAA 59.484 43.478 5.11 0.00 35.26 2.10
5831 6351 3.101437 TCGTATTTTGGCCAGTCCTCTA 58.899 45.455 5.11 0.00 35.26 2.43
5832 6352 1.906574 TCGTATTTTGGCCAGTCCTCT 59.093 47.619 5.11 0.00 35.26 3.69
5833 6353 2.396590 TCGTATTTTGGCCAGTCCTC 57.603 50.000 5.11 0.00 35.26 3.71
5834 6354 2.871096 TTCGTATTTTGGCCAGTCCT 57.129 45.000 5.11 0.00 35.26 3.85
5835 6355 3.442273 TGATTTCGTATTTTGGCCAGTCC 59.558 43.478 5.11 0.00 0.00 3.85
5836 6356 4.156008 AGTGATTTCGTATTTTGGCCAGTC 59.844 41.667 5.11 0.00 0.00 3.51
5837 6357 4.079253 AGTGATTTCGTATTTTGGCCAGT 58.921 39.130 5.11 0.00 0.00 4.00
5838 6358 4.701956 AGTGATTTCGTATTTTGGCCAG 57.298 40.909 5.11 0.00 0.00 4.85
5839 6359 6.767524 ATTAGTGATTTCGTATTTTGGCCA 57.232 33.333 0.00 0.00 0.00 5.36
5840 6360 9.233232 CTTAATTAGTGATTTCGTATTTTGGCC 57.767 33.333 0.00 0.00 0.00 5.36
5841 6361 9.233232 CCTTAATTAGTGATTTCGTATTTTGGC 57.767 33.333 0.00 0.00 0.00 4.52
5849 6369 9.583765 GAAGTACTCCTTAATTAGTGATTTCGT 57.416 33.333 0.00 0.00 32.03 3.85
5874 6394 3.357203 AGTTAGAGTGATCTCCGCAAGA 58.643 45.455 0.00 0.00 41.26 3.02
5891 6411 1.141254 TGTCGCAACCTGGGAAAGTTA 59.859 47.619 0.00 0.00 41.08 2.24
5924 6444 3.869187 CGACAAGTGGCGCACATA 58.131 55.556 10.83 0.00 40.91 2.29
6220 6748 0.668535 GAGAGGCACGGTTTTGCTTT 59.331 50.000 0.00 0.00 42.56 3.51
6255 6785 4.565166 GGAAAGGGAAAAACGTGTTTTCTG 59.435 41.667 22.99 0.00 41.45 3.02
6262 6793 3.065648 TCTTTCGGAAAGGGAAAAACGTG 59.934 43.478 25.66 1.87 39.01 4.49
6293 6830 3.491652 GCTTTCGCGAGAGGCACC 61.492 66.667 25.84 7.44 43.84 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.