Multiple sequence alignment - TraesCS4B01G031900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G031900 chr4B 100.000 2366 0 0 1 2366 23811063 23808698 0.000000e+00 4370
1 TraesCS4B01G031900 chrUn 97.433 857 21 1 10 865 257941952 257942808 0.000000e+00 1459
2 TraesCS4B01G031900 chrUn 98.100 579 11 0 785 1363 414475474 414474896 0.000000e+00 1009
3 TraesCS4B01G031900 chrUn 97.747 577 13 0 785 1361 275335116 275335692 0.000000e+00 994
4 TraesCS4B01G031900 chr4D 97.083 857 23 2 10 865 123686803 123687658 0.000000e+00 1443
5 TraesCS4B01G031900 chr6D 96.849 857 26 1 10 865 283185252 283186108 0.000000e+00 1432
6 TraesCS4B01G031900 chr6D 98.100 579 11 0 785 1363 430466784 430466206 0.000000e+00 1009
7 TraesCS4B01G031900 chr2D 96.733 857 27 1 10 865 637310865 637310009 0.000000e+00 1426
8 TraesCS4B01G031900 chr2D 96.383 857 29 2 10 865 17982213 17983068 0.000000e+00 1410
9 TraesCS4B01G031900 chr6B 96.499 857 28 2 10 865 388358910 388358055 0.000000e+00 1415
10 TraesCS4B01G031900 chr6B 96.053 684 27 0 680 1363 625537518 625536835 0.000000e+00 1114
11 TraesCS4B01G031900 chr7B 96.383 857 29 2 10 865 531995065 531995920 0.000000e+00 1410
12 TraesCS4B01G031900 chr7B 95.906 684 28 0 680 1363 52952051 52951368 0.000000e+00 1109
13 TraesCS4B01G031900 chr7D 96.266 857 30 2 10 865 307087338 307088193 0.000000e+00 1404
14 TraesCS4B01G031900 chr7D 93.978 714 41 2 651 1363 306583778 306584490 0.000000e+00 1079
15 TraesCS4B01G031900 chr7D 93.018 487 29 5 1384 1869 305358109 305358591 0.000000e+00 706
16 TraesCS4B01G031900 chr7A 95.921 858 29 3 10 865 60098269 60097416 0.000000e+00 1386
17 TraesCS4B01G031900 chr1B 94.477 688 36 2 674 1361 286076897 286077582 0.000000e+00 1059
18 TraesCS4B01G031900 chr3D 97.755 579 13 0 785 1363 202625480 202624902 0.000000e+00 998
19 TraesCS4B01G031900 chr5A 97.265 585 16 0 779 1363 162145422 162144838 0.000000e+00 992
20 TraesCS4B01G031900 chr5A 93.145 496 29 3 1379 1870 475331034 475330540 0.000000e+00 723
21 TraesCS4B01G031900 chr1D 93.712 493 24 5 1384 1870 318382442 318381951 0.000000e+00 732
22 TraesCS4B01G031900 chr4A 93.509 493 25 4 1382 1870 537461708 537461219 0.000000e+00 726
23 TraesCS4B01G031900 chr4A 88.966 145 13 3 2218 2361 589316873 589317015 2.420000e-40 176
24 TraesCS4B01G031900 chr2A 92.688 506 31 4 1384 1884 515793259 515792755 0.000000e+00 725
25 TraesCS4B01G031900 chr2A 92.673 505 31 5 1384 1884 323600686 323600184 0.000000e+00 723
26 TraesCS4B01G031900 chr2A 92.292 506 33 6 1384 1886 236076399 236075897 0.000000e+00 713
27 TraesCS4B01G031900 chr5B 92.490 506 32 4 1384 1884 371495891 371495387 0.000000e+00 719
28 TraesCS4B01G031900 chr5D 91.977 511 35 5 1384 1890 158738699 158738191 0.000000e+00 712


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G031900 chr4B 23808698 23811063 2365 True 4370 4370 100.000 1 2366 1 chr4B.!!$R1 2365
1 TraesCS4B01G031900 chrUn 257941952 257942808 856 False 1459 1459 97.433 10 865 1 chrUn.!!$F1 855
2 TraesCS4B01G031900 chrUn 414474896 414475474 578 True 1009 1009 98.100 785 1363 1 chrUn.!!$R1 578
3 TraesCS4B01G031900 chrUn 275335116 275335692 576 False 994 994 97.747 785 1361 1 chrUn.!!$F2 576
4 TraesCS4B01G031900 chr4D 123686803 123687658 855 False 1443 1443 97.083 10 865 1 chr4D.!!$F1 855
5 TraesCS4B01G031900 chr6D 283185252 283186108 856 False 1432 1432 96.849 10 865 1 chr6D.!!$F1 855
6 TraesCS4B01G031900 chr6D 430466206 430466784 578 True 1009 1009 98.100 785 1363 1 chr6D.!!$R1 578
7 TraesCS4B01G031900 chr2D 637310009 637310865 856 True 1426 1426 96.733 10 865 1 chr2D.!!$R1 855
8 TraesCS4B01G031900 chr2D 17982213 17983068 855 False 1410 1410 96.383 10 865 1 chr2D.!!$F1 855
9 TraesCS4B01G031900 chr6B 388358055 388358910 855 True 1415 1415 96.499 10 865 1 chr6B.!!$R1 855
10 TraesCS4B01G031900 chr6B 625536835 625537518 683 True 1114 1114 96.053 680 1363 1 chr6B.!!$R2 683
11 TraesCS4B01G031900 chr7B 531995065 531995920 855 False 1410 1410 96.383 10 865 1 chr7B.!!$F1 855
12 TraesCS4B01G031900 chr7B 52951368 52952051 683 True 1109 1109 95.906 680 1363 1 chr7B.!!$R1 683
13 TraesCS4B01G031900 chr7D 307087338 307088193 855 False 1404 1404 96.266 10 865 1 chr7D.!!$F3 855
14 TraesCS4B01G031900 chr7D 306583778 306584490 712 False 1079 1079 93.978 651 1363 1 chr7D.!!$F2 712
15 TraesCS4B01G031900 chr7A 60097416 60098269 853 True 1386 1386 95.921 10 865 1 chr7A.!!$R1 855
16 TraesCS4B01G031900 chr1B 286076897 286077582 685 False 1059 1059 94.477 674 1361 1 chr1B.!!$F1 687
17 TraesCS4B01G031900 chr3D 202624902 202625480 578 True 998 998 97.755 785 1363 1 chr3D.!!$R1 578
18 TraesCS4B01G031900 chr5A 162144838 162145422 584 True 992 992 97.265 779 1363 1 chr5A.!!$R1 584
19 TraesCS4B01G031900 chr2A 515792755 515793259 504 True 725 725 92.688 1384 1884 1 chr2A.!!$R3 500
20 TraesCS4B01G031900 chr2A 323600184 323600686 502 True 723 723 92.673 1384 1884 1 chr2A.!!$R2 500
21 TraesCS4B01G031900 chr2A 236075897 236076399 502 True 713 713 92.292 1384 1886 1 chr2A.!!$R1 502
22 TraesCS4B01G031900 chr5B 371495387 371495891 504 True 719 719 92.490 1384 1884 1 chr5B.!!$R1 500
23 TraesCS4B01G031900 chr5D 158738191 158738699 508 True 712 712 91.977 1384 1890 1 chr5D.!!$R1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
928 932 0.8951 AGCGGCTTCCAATTGCTCAA 60.895 50.0 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1981 1992 0.106268 TTGGCCTGGAGCACTTTGAA 60.106 50.0 3.32 0.0 46.5 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
214 215 9.530633 CAAAGCCTCTACTTTAGATATTTACGT 57.469 33.333 0.00 0.00 37.78 3.57
294 295 4.844085 TCTTTCATCCTCCTTACCAGAACA 59.156 41.667 0.00 0.00 0.00 3.18
303 304 5.377478 CTCCTTACCAGAACACTTTTCCTT 58.623 41.667 0.00 0.00 0.00 3.36
576 579 4.738252 CGCTAACGTAACTAATGCAGATGA 59.262 41.667 0.00 0.00 33.53 2.92
655 658 8.767478 TTAGTATAGAAAGAAAAGGAACCACG 57.233 34.615 0.00 0.00 0.00 4.94
677 680 9.074443 CCACGTCTATTCTCTTTTCTTAAGTAC 57.926 37.037 1.63 0.00 0.00 2.73
877 881 4.451629 AAAGATGGACAGTAACGATCGT 57.548 40.909 16.60 16.60 0.00 3.73
928 932 0.895100 AGCGGCTTCCAATTGCTCAA 60.895 50.000 0.00 0.00 0.00 3.02
970 974 4.262592 GGGACTTTGATGGTGAGCAAAAAT 60.263 41.667 0.00 0.00 37.04 1.82
1069 1073 1.381928 CCACCGCCTAGCTCGAACTA 61.382 60.000 0.00 0.00 0.00 2.24
1100 1104 7.849026 CGATGTAATAAAACTTATGGTTGACGG 59.151 37.037 0.00 0.00 38.29 4.79
1147 1151 2.897969 GAGGTGGTCAAAGTAGGAGTCA 59.102 50.000 0.00 0.00 0.00 3.41
1253 1257 7.041644 AGCTTTCAAACAACGTATAAGCTACAA 60.042 33.333 0.00 0.00 43.41 2.41
1364 1368 0.251916 CTGGCTTCCACCAATCGGTA 59.748 55.000 0.00 0.00 46.94 4.02
1365 1369 0.693622 TGGCTTCCACCAATCGGTAA 59.306 50.000 0.00 0.00 46.94 2.85
1366 1370 1.339631 TGGCTTCCACCAATCGGTAAG 60.340 52.381 0.00 0.00 46.94 2.34
1367 1371 1.065709 GGCTTCCACCAATCGGTAAGA 60.066 52.381 0.00 0.00 46.94 2.10
1368 1372 2.617021 GGCTTCCACCAATCGGTAAGAA 60.617 50.000 0.00 0.00 46.94 2.52
1369 1373 3.078837 GCTTCCACCAATCGGTAAGAAA 58.921 45.455 0.00 0.00 46.94 2.52
1370 1374 3.694566 GCTTCCACCAATCGGTAAGAAAT 59.305 43.478 0.00 0.00 46.94 2.17
1371 1375 4.879545 GCTTCCACCAATCGGTAAGAAATA 59.120 41.667 0.00 0.00 46.94 1.40
1372 1376 5.531287 GCTTCCACCAATCGGTAAGAAATAT 59.469 40.000 0.00 0.00 46.94 1.28
1373 1377 6.039382 GCTTCCACCAATCGGTAAGAAATATT 59.961 38.462 0.00 0.00 46.94 1.28
1374 1378 7.227910 GCTTCCACCAATCGGTAAGAAATATTA 59.772 37.037 0.00 0.00 46.94 0.98
1375 1379 8.671384 TTCCACCAATCGGTAAGAAATATTAG 57.329 34.615 0.00 0.00 46.94 1.73
1376 1380 8.025270 TCCACCAATCGGTAAGAAATATTAGA 57.975 34.615 0.00 0.00 46.94 2.10
1377 1381 8.487848 TCCACCAATCGGTAAGAAATATTAGAA 58.512 33.333 0.00 0.00 46.94 2.10
1378 1382 9.116067 CCACCAATCGGTAAGAAATATTAGAAA 57.884 33.333 0.00 0.00 46.94 2.52
1406 1410 5.443283 TCTATACCCCTATATAGTGTGCGG 58.557 45.833 8.92 2.48 36.76 5.69
1407 1411 1.640917 ACCCCTATATAGTGTGCGGG 58.359 55.000 15.75 15.75 35.06 6.13
1497 1501 6.672266 ACTGGTCGTTTGGATATCATCTAT 57.328 37.500 4.83 0.00 0.00 1.98
1530 1534 7.362834 CCAGATTTTGCCACATGTACAATCTAA 60.363 37.037 12.72 6.58 30.19 2.10
1534 1538 5.895636 TGCCACATGTACAATCTAAAAGG 57.104 39.130 0.00 0.00 0.00 3.11
1577 1581 5.409214 GCATAATGCACAAACCTCAAAACAT 59.591 36.000 0.00 0.00 44.26 2.71
1596 1600 6.715347 AACATAAGCACTTCTCCTTTGTTT 57.285 33.333 0.00 0.00 0.00 2.83
1623 1627 4.974645 TCTTCCGTATCATAATTGCCCT 57.025 40.909 0.00 0.00 0.00 5.19
1624 1628 5.304686 TCTTCCGTATCATAATTGCCCTT 57.695 39.130 0.00 0.00 0.00 3.95
1797 1808 8.681486 TGCATATATGACTCAAAGCTTACATT 57.319 30.769 17.10 0.00 0.00 2.71
1869 1880 5.643664 CAATGCACGTGTACCTTACTAGTA 58.356 41.667 18.38 0.00 0.00 1.82
1870 1881 5.902613 ATGCACGTGTACCTTACTAGTAA 57.097 39.130 18.38 14.52 0.00 2.24
1990 2001 7.468922 AAAAAGCTAGACAAATTCAAAGTGC 57.531 32.000 0.00 0.00 0.00 4.40
1991 2002 6.396829 AAAGCTAGACAAATTCAAAGTGCT 57.603 33.333 0.00 0.00 0.00 4.40
1992 2003 5.619625 AGCTAGACAAATTCAAAGTGCTC 57.380 39.130 0.00 0.00 0.00 4.26
1993 2004 4.457257 AGCTAGACAAATTCAAAGTGCTCC 59.543 41.667 0.00 0.00 0.00 4.70
1994 2005 4.216257 GCTAGACAAATTCAAAGTGCTCCA 59.784 41.667 0.00 0.00 0.00 3.86
1995 2006 4.843220 AGACAAATTCAAAGTGCTCCAG 57.157 40.909 0.00 0.00 0.00 3.86
1996 2007 3.571401 AGACAAATTCAAAGTGCTCCAGG 59.429 43.478 0.00 0.00 0.00 4.45
1997 2008 2.036346 ACAAATTCAAAGTGCTCCAGGC 59.964 45.455 0.00 0.00 42.22 4.85
1998 2009 1.260544 AATTCAAAGTGCTCCAGGCC 58.739 50.000 0.00 0.00 40.92 5.19
1999 2010 0.112995 ATTCAAAGTGCTCCAGGCCA 59.887 50.000 5.01 0.00 40.92 5.36
2000 2011 0.106268 TTCAAAGTGCTCCAGGCCAA 60.106 50.000 5.01 0.00 40.92 4.52
2001 2012 0.112995 TCAAAGTGCTCCAGGCCAAT 59.887 50.000 5.01 0.00 40.92 3.16
2002 2013 0.971386 CAAAGTGCTCCAGGCCAATT 59.029 50.000 5.01 0.00 40.92 2.32
2003 2014 0.971386 AAAGTGCTCCAGGCCAATTG 59.029 50.000 5.01 0.00 40.92 2.32
2004 2015 0.901580 AAGTGCTCCAGGCCAATTGG 60.902 55.000 20.81 20.81 40.92 3.16
2018 2029 3.421919 CAATTGGCCTTGGAATGGTTT 57.578 42.857 3.32 0.00 32.80 3.27
2019 2030 3.075884 CAATTGGCCTTGGAATGGTTTG 58.924 45.455 3.32 0.00 32.80 2.93
2020 2031 2.094100 TTGGCCTTGGAATGGTTTGA 57.906 45.000 3.32 0.00 32.80 2.69
2021 2032 1.631405 TGGCCTTGGAATGGTTTGAG 58.369 50.000 3.32 0.00 32.80 3.02
2022 2033 0.897621 GGCCTTGGAATGGTTTGAGG 59.102 55.000 0.00 0.00 32.80 3.86
2023 2034 1.549950 GGCCTTGGAATGGTTTGAGGA 60.550 52.381 0.00 0.00 32.80 3.71
2024 2035 2.247358 GCCTTGGAATGGTTTGAGGAA 58.753 47.619 0.00 0.00 32.80 3.36
2025 2036 2.232208 GCCTTGGAATGGTTTGAGGAAG 59.768 50.000 0.00 0.00 32.80 3.46
2026 2037 2.232208 CCTTGGAATGGTTTGAGGAAGC 59.768 50.000 0.00 0.00 36.29 3.86
2027 2038 2.978156 TGGAATGGTTTGAGGAAGCT 57.022 45.000 0.00 0.00 36.70 3.74
2028 2039 3.243359 TGGAATGGTTTGAGGAAGCTT 57.757 42.857 0.00 0.00 36.70 3.74
2029 2040 3.157087 TGGAATGGTTTGAGGAAGCTTC 58.843 45.455 18.54 18.54 36.70 3.86
2038 2049 2.753446 GGAAGCTTCCAGGCTGGC 60.753 66.667 35.71 17.04 46.76 4.85
2039 2050 2.753446 GAAGCTTCCAGGCTGGCC 60.753 66.667 29.02 18.10 42.24 5.36
2040 2051 3.574074 GAAGCTTCCAGGCTGGCCA 62.574 63.158 29.02 16.24 42.24 5.36
2041 2052 3.875510 AAGCTTCCAGGCTGGCCAC 62.876 63.158 29.02 18.60 42.24 5.01
2042 2053 4.666253 GCTTCCAGGCTGGCCACA 62.666 66.667 29.02 8.80 37.47 4.17
2043 2054 2.357836 CTTCCAGGCTGGCCACAT 59.642 61.111 29.02 0.00 37.47 3.21
2044 2055 2.036098 TTCCAGGCTGGCCACATG 59.964 61.111 29.02 7.20 37.47 3.21
2045 2056 3.588817 TTCCAGGCTGGCCACATGG 62.589 63.158 29.02 24.35 37.47 3.66
2047 2058 4.051167 CAGGCTGGCCACATGGGA 62.051 66.667 14.39 0.00 40.01 4.37
2048 2059 3.736224 AGGCTGGCCACATGGGAG 61.736 66.667 14.39 0.00 40.01 4.30
2049 2060 4.052518 GGCTGGCCACATGGGAGT 62.053 66.667 0.00 0.00 40.01 3.85
2050 2061 2.036256 GCTGGCCACATGGGAGTT 59.964 61.111 0.00 0.00 40.01 3.01
2051 2062 1.302949 GCTGGCCACATGGGAGTTA 59.697 57.895 0.00 0.00 40.01 2.24
2052 2063 0.323360 GCTGGCCACATGGGAGTTAA 60.323 55.000 0.00 0.00 40.01 2.01
2053 2064 1.890573 GCTGGCCACATGGGAGTTAAA 60.891 52.381 0.00 0.00 40.01 1.52
2054 2065 1.818674 CTGGCCACATGGGAGTTAAAC 59.181 52.381 0.00 0.00 40.01 2.01
2055 2066 1.182667 GGCCACATGGGAGTTAAACC 58.817 55.000 0.00 0.00 40.01 3.27
2056 2067 1.549037 GGCCACATGGGAGTTAAACCA 60.549 52.381 0.00 0.00 41.76 3.67
2058 2069 3.626222 GGCCACATGGGAGTTAAACCATA 60.626 47.826 0.00 0.00 45.37 2.74
2059 2070 3.632145 GCCACATGGGAGTTAAACCATAG 59.368 47.826 0.00 5.62 45.37 2.23
2060 2071 4.855340 CCACATGGGAGTTAAACCATAGT 58.145 43.478 0.00 6.07 45.37 2.12
2061 2072 5.261216 CCACATGGGAGTTAAACCATAGTT 58.739 41.667 0.00 0.00 45.37 2.24
2062 2073 5.714806 CCACATGGGAGTTAAACCATAGTTT 59.285 40.000 0.00 0.00 45.37 2.66
2063 2074 6.127730 CCACATGGGAGTTAAACCATAGTTTC 60.128 42.308 0.00 0.00 45.37 2.78
2064 2075 5.646360 ACATGGGAGTTAAACCATAGTTTCG 59.354 40.000 0.00 0.00 45.37 3.46
2065 2076 5.486735 TGGGAGTTAAACCATAGTTTCGA 57.513 39.130 0.00 0.00 42.67 3.71
2066 2077 5.867330 TGGGAGTTAAACCATAGTTTCGAA 58.133 37.500 0.00 0.00 42.67 3.71
2067 2078 5.935789 TGGGAGTTAAACCATAGTTTCGAAG 59.064 40.000 0.00 0.00 42.67 3.79
2068 2079 5.936372 GGGAGTTAAACCATAGTTTCGAAGT 59.064 40.000 0.00 0.00 42.67 3.01
2069 2080 6.429078 GGGAGTTAAACCATAGTTTCGAAGTT 59.571 38.462 0.00 0.00 42.67 2.66
2070 2081 7.040892 GGGAGTTAAACCATAGTTTCGAAGTTT 60.041 37.037 13.35 13.35 42.67 2.66
2071 2082 8.992073 GGAGTTAAACCATAGTTTCGAAGTTTA 58.008 33.333 11.80 11.80 42.67 2.01
2073 2084 9.551734 AGTTAAACCATAGTTTCGAAGTTTAGT 57.448 29.630 14.12 7.12 42.67 2.24
2078 2089 9.939802 AACCATAGTTTCGAAGTTTAGTTATCT 57.060 29.630 0.00 0.00 29.61 1.98
2102 2113 9.817809 TCTATGAACTATGTCCTATGTTTGAAC 57.182 33.333 0.00 0.00 0.00 3.18
2103 2114 7.865706 ATGAACTATGTCCTATGTTTGAACC 57.134 36.000 0.00 0.00 0.00 3.62
2104 2115 6.774673 TGAACTATGTCCTATGTTTGAACCA 58.225 36.000 0.00 0.00 0.00 3.67
2105 2116 7.402054 TGAACTATGTCCTATGTTTGAACCAT 58.598 34.615 0.00 0.00 0.00 3.55
2106 2117 7.888021 TGAACTATGTCCTATGTTTGAACCATT 59.112 33.333 0.00 0.00 0.00 3.16
2107 2118 9.391006 GAACTATGTCCTATGTTTGAACCATTA 57.609 33.333 0.00 0.00 0.00 1.90
2108 2119 8.732746 ACTATGTCCTATGTTTGAACCATTAC 57.267 34.615 0.00 0.00 0.00 1.89
2109 2120 8.548877 ACTATGTCCTATGTTTGAACCATTACT 58.451 33.333 0.00 0.00 0.00 2.24
2110 2121 7.630242 ATGTCCTATGTTTGAACCATTACTG 57.370 36.000 0.00 0.00 0.00 2.74
2111 2122 6.539173 TGTCCTATGTTTGAACCATTACTGT 58.461 36.000 0.00 0.00 0.00 3.55
2112 2123 6.429692 TGTCCTATGTTTGAACCATTACTGTG 59.570 38.462 0.00 0.00 0.00 3.66
2113 2124 6.430000 GTCCTATGTTTGAACCATTACTGTGT 59.570 38.462 0.00 0.00 0.00 3.72
2114 2125 7.604927 GTCCTATGTTTGAACCATTACTGTGTA 59.395 37.037 0.00 0.00 0.00 2.90
2115 2126 8.325787 TCCTATGTTTGAACCATTACTGTGTAT 58.674 33.333 0.00 0.00 0.00 2.29
2116 2127 9.607988 CCTATGTTTGAACCATTACTGTGTATA 57.392 33.333 0.00 0.00 0.00 1.47
2120 2131 9.508642 TGTTTGAACCATTACTGTGTATAATCA 57.491 29.630 0.00 0.00 0.00 2.57
2123 2134 9.679661 TTGAACCATTACTGTGTATAATCATGT 57.320 29.630 0.00 0.00 0.00 3.21
2124 2135 9.679661 TGAACCATTACTGTGTATAATCATGTT 57.320 29.630 0.00 0.00 0.00 2.71
2126 2137 8.365399 ACCATTACTGTGTATAATCATGTTCG 57.635 34.615 0.00 0.00 0.00 3.95
2127 2138 8.201464 ACCATTACTGTGTATAATCATGTTCGA 58.799 33.333 0.00 0.00 0.00 3.71
2128 2139 8.487970 CCATTACTGTGTATAATCATGTTCGAC 58.512 37.037 0.00 0.00 0.00 4.20
2129 2140 7.673810 TTACTGTGTATAATCATGTTCGACG 57.326 36.000 0.00 0.00 0.00 5.12
2130 2141 5.647589 ACTGTGTATAATCATGTTCGACGT 58.352 37.500 0.00 0.00 0.00 4.34
2131 2142 5.742453 ACTGTGTATAATCATGTTCGACGTC 59.258 40.000 5.18 5.18 0.00 4.34
2132 2143 5.038683 TGTGTATAATCATGTTCGACGTCC 58.961 41.667 10.58 0.00 0.00 4.79
2133 2144 5.163591 TGTGTATAATCATGTTCGACGTCCT 60.164 40.000 10.58 0.00 0.00 3.85
2134 2145 6.038492 TGTGTATAATCATGTTCGACGTCCTA 59.962 38.462 10.58 0.00 0.00 2.94
2135 2146 7.082602 GTGTATAATCATGTTCGACGTCCTAT 58.917 38.462 10.58 0.00 0.00 2.57
2136 2147 7.060748 GTGTATAATCATGTTCGACGTCCTATG 59.939 40.741 10.58 9.42 0.00 2.23
2137 2148 4.386867 AATCATGTTCGACGTCCTATGT 57.613 40.909 10.58 0.00 0.00 2.29
2138 2149 3.861276 TCATGTTCGACGTCCTATGTT 57.139 42.857 10.58 0.00 0.00 2.71
2139 2150 4.182693 TCATGTTCGACGTCCTATGTTT 57.817 40.909 10.58 0.00 0.00 2.83
2140 2151 3.924073 TCATGTTCGACGTCCTATGTTTG 59.076 43.478 10.58 0.00 0.00 2.93
2141 2152 3.646611 TGTTCGACGTCCTATGTTTGA 57.353 42.857 10.58 0.00 0.00 2.69
2142 2153 3.979948 TGTTCGACGTCCTATGTTTGAA 58.020 40.909 10.58 2.01 0.00 2.69
2143 2154 3.737266 TGTTCGACGTCCTATGTTTGAAC 59.263 43.478 10.58 14.50 35.34 3.18
2144 2155 3.928727 TCGACGTCCTATGTTTGAACT 57.071 42.857 10.58 0.00 0.00 3.01
2145 2156 5.156355 GTTCGACGTCCTATGTTTGAACTA 58.844 41.667 10.58 0.00 33.64 2.24
2146 2157 5.375417 TCGACGTCCTATGTTTGAACTAA 57.625 39.130 10.58 0.00 0.00 2.24
2147 2158 5.396484 TCGACGTCCTATGTTTGAACTAAG 58.604 41.667 10.58 0.00 0.00 2.18
2148 2159 5.048504 TCGACGTCCTATGTTTGAACTAAGT 60.049 40.000 10.58 0.00 0.00 2.24
2149 2160 5.632347 CGACGTCCTATGTTTGAACTAAGTT 59.368 40.000 10.58 0.00 0.00 2.66
2150 2161 6.145048 CGACGTCCTATGTTTGAACTAAGTTT 59.855 38.462 10.58 0.00 0.00 2.66
2151 2162 7.326789 CGACGTCCTATGTTTGAACTAAGTTTA 59.673 37.037 10.58 0.00 0.00 2.01
2152 2163 9.148104 GACGTCCTATGTTTGAACTAAGTTTAT 57.852 33.333 3.51 0.00 0.00 1.40
2153 2164 8.932791 ACGTCCTATGTTTGAACTAAGTTTATG 58.067 33.333 0.00 0.00 0.00 1.90
2154 2165 9.146984 CGTCCTATGTTTGAACTAAGTTTATGA 57.853 33.333 0.00 0.00 0.00 2.15
2160 2171 8.161699 TGTTTGAACTAAGTTTATGAACCTCC 57.838 34.615 0.00 0.00 36.39 4.30
2161 2172 7.996644 TGTTTGAACTAAGTTTATGAACCTCCT 59.003 33.333 0.00 0.00 36.39 3.69
2162 2173 9.498176 GTTTGAACTAAGTTTATGAACCTCCTA 57.502 33.333 0.00 0.00 36.39 2.94
2172 2183 9.838339 AGTTTATGAACCTCCTATATTCACAAG 57.162 33.333 0.00 0.00 35.28 3.16
2173 2184 8.560374 GTTTATGAACCTCCTATATTCACAAGC 58.440 37.037 0.00 0.00 35.28 4.01
2174 2185 5.692115 TGAACCTCCTATATTCACAAGCA 57.308 39.130 0.00 0.00 0.00 3.91
2175 2186 6.252599 TGAACCTCCTATATTCACAAGCAT 57.747 37.500 0.00 0.00 0.00 3.79
2176 2187 6.662755 TGAACCTCCTATATTCACAAGCATT 58.337 36.000 0.00 0.00 0.00 3.56
2177 2188 7.118723 TGAACCTCCTATATTCACAAGCATTT 58.881 34.615 0.00 0.00 0.00 2.32
2178 2189 8.271458 TGAACCTCCTATATTCACAAGCATTTA 58.729 33.333 0.00 0.00 0.00 1.40
2179 2190 9.289782 GAACCTCCTATATTCACAAGCATTTAT 57.710 33.333 0.00 0.00 0.00 1.40
2180 2191 9.646522 AACCTCCTATATTCACAAGCATTTATT 57.353 29.630 0.00 0.00 0.00 1.40
2181 2192 9.646522 ACCTCCTATATTCACAAGCATTTATTT 57.353 29.630 0.00 0.00 0.00 1.40
2182 2193 9.903682 CCTCCTATATTCACAAGCATTTATTTG 57.096 33.333 0.00 0.00 0.00 2.32
2188 2199 6.647334 TTCACAAGCATTTATTTGTCTCCA 57.353 33.333 0.00 0.00 35.46 3.86
2189 2200 6.647334 TCACAAGCATTTATTTGTCTCCAA 57.353 33.333 0.00 0.00 35.46 3.53
2190 2201 7.048629 TCACAAGCATTTATTTGTCTCCAAA 57.951 32.000 0.00 0.00 44.27 3.28
2192 2203 8.149647 TCACAAGCATTTATTTGTCTCCAAATT 58.850 29.630 6.04 0.00 46.61 1.82
2193 2204 8.776470 CACAAGCATTTATTTGTCTCCAAATTT 58.224 29.630 6.04 0.00 46.61 1.82
2194 2205 9.341078 ACAAGCATTTATTTGTCTCCAAATTTT 57.659 25.926 6.04 0.00 46.61 1.82
2195 2206 9.815936 CAAGCATTTATTTGTCTCCAAATTTTC 57.184 29.630 6.04 0.00 46.61 2.29
2196 2207 9.558396 AAGCATTTATTTGTCTCCAAATTTTCA 57.442 25.926 6.04 0.00 46.61 2.69
2197 2208 9.211485 AGCATTTATTTGTCTCCAAATTTTCAG 57.789 29.630 6.04 0.00 46.61 3.02
2198 2209 8.992073 GCATTTATTTGTCTCCAAATTTTCAGT 58.008 29.630 6.04 0.00 46.61 3.41
2201 2212 9.748708 TTTATTTGTCTCCAAATTTTCAGTCTG 57.251 29.630 6.04 0.00 46.61 3.51
2202 2213 7.587037 ATTTGTCTCCAAATTTTCAGTCTGA 57.413 32.000 0.00 0.00 46.61 3.27
2203 2214 7.403312 TTTGTCTCCAAATTTTCAGTCTGAA 57.597 32.000 11.36 11.36 35.67 3.02
2204 2215 7.403312 TTGTCTCCAAATTTTCAGTCTGAAA 57.597 32.000 21.59 21.59 43.84 2.69
2214 2225 5.850557 TTTCAGTCTGAAAATGGCAGAAA 57.149 34.783 22.87 0.00 42.72 2.52
2215 2226 5.443185 TTCAGTCTGAAAATGGCAGAAAG 57.557 39.130 13.00 0.00 43.39 2.62
2216 2227 3.254166 TCAGTCTGAAAATGGCAGAAAGC 59.746 43.478 0.00 0.00 43.39 3.51
2217 2228 6.670869 TTCAGTCTGAAAATGGCAGAAAGCA 61.671 40.000 13.00 0.00 43.39 3.91
2218 2229 8.079201 TTCAGTCTGAAAATGGCAGAAAGCAA 62.079 38.462 13.00 0.00 43.39 3.91
2219 2230 9.457446 TTCAGTCTGAAAATGGCAGAAAGCAAA 62.457 37.037 13.00 0.00 43.39 3.68
2226 2237 2.669878 GCAGAAAGCAAATGGGGGA 58.330 52.632 0.00 0.00 44.79 4.81
2227 2238 1.197812 GCAGAAAGCAAATGGGGGAT 58.802 50.000 0.00 0.00 44.79 3.85
2228 2239 1.134610 GCAGAAAGCAAATGGGGGATG 60.135 52.381 0.00 0.00 44.79 3.51
2229 2240 2.181975 CAGAAAGCAAATGGGGGATGT 58.818 47.619 0.00 0.00 0.00 3.06
2230 2241 2.167075 CAGAAAGCAAATGGGGGATGTC 59.833 50.000 0.00 0.00 0.00 3.06
2231 2242 1.134946 GAAAGCAAATGGGGGATGTCG 59.865 52.381 0.00 0.00 0.00 4.35
2232 2243 0.331278 AAGCAAATGGGGGATGTCGA 59.669 50.000 0.00 0.00 0.00 4.20
2233 2244 0.552848 AGCAAATGGGGGATGTCGAT 59.447 50.000 0.00 0.00 0.00 3.59
2234 2245 0.670162 GCAAATGGGGGATGTCGATG 59.330 55.000 0.00 0.00 0.00 3.84
2235 2246 1.321474 CAAATGGGGGATGTCGATGG 58.679 55.000 0.00 0.00 0.00 3.51
2236 2247 0.185901 AAATGGGGGATGTCGATGGG 59.814 55.000 0.00 0.00 0.00 4.00
2237 2248 2.357593 AATGGGGGATGTCGATGGGC 62.358 60.000 0.00 0.00 0.00 5.36
2238 2249 3.171388 GGGGGATGTCGATGGGCT 61.171 66.667 0.00 0.00 0.00 5.19
2239 2250 2.427753 GGGGATGTCGATGGGCTC 59.572 66.667 0.00 0.00 0.00 4.70
2240 2251 2.427753 GGGATGTCGATGGGCTCC 59.572 66.667 0.00 0.00 0.00 4.70
2241 2252 2.443394 GGGATGTCGATGGGCTCCA 61.443 63.158 0.00 0.00 38.19 3.86
2243 2254 0.976641 GGATGTCGATGGGCTCCATA 59.023 55.000 6.69 0.00 45.26 2.74
2244 2255 1.066573 GGATGTCGATGGGCTCCATAG 60.067 57.143 6.69 7.22 45.26 2.23
2245 2256 1.620819 GATGTCGATGGGCTCCATAGT 59.379 52.381 6.69 0.00 45.26 2.12
2246 2257 1.496060 TGTCGATGGGCTCCATAGTT 58.504 50.000 6.69 0.00 45.26 2.24
2247 2258 1.837439 TGTCGATGGGCTCCATAGTTT 59.163 47.619 6.69 0.00 45.26 2.66
2248 2259 2.158957 TGTCGATGGGCTCCATAGTTTC 60.159 50.000 6.69 4.37 45.26 2.78
2249 2260 2.115427 TCGATGGGCTCCATAGTTTCA 58.885 47.619 6.69 0.00 45.26 2.69
2250 2261 2.705658 TCGATGGGCTCCATAGTTTCAT 59.294 45.455 6.69 0.00 45.26 2.57
2251 2262 2.810274 CGATGGGCTCCATAGTTTCATG 59.190 50.000 6.69 0.00 45.26 3.07
2252 2263 2.734755 TGGGCTCCATAGTTTCATGG 57.265 50.000 0.00 0.00 45.93 3.66
2271 2282 9.585099 TTTCATGGACAAACTGATAATTTATGC 57.415 29.630 0.00 0.00 0.00 3.14
2272 2283 8.291191 TCATGGACAAACTGATAATTTATGCA 57.709 30.769 0.00 0.00 0.00 3.96
2273 2284 8.407832 TCATGGACAAACTGATAATTTATGCAG 58.592 33.333 0.00 11.25 34.65 4.41
2274 2285 7.936496 TGGACAAACTGATAATTTATGCAGA 57.064 32.000 16.21 0.00 32.86 4.26
2275 2286 7.761409 TGGACAAACTGATAATTTATGCAGAC 58.239 34.615 16.21 0.00 32.86 3.51
2276 2287 7.392953 TGGACAAACTGATAATTTATGCAGACA 59.607 33.333 16.21 0.00 32.86 3.41
2277 2288 8.408601 GGACAAACTGATAATTTATGCAGACAT 58.591 33.333 16.21 0.00 40.49 3.06
2278 2289 9.229784 GACAAACTGATAATTTATGCAGACATG 57.770 33.333 16.21 0.00 37.04 3.21
2279 2290 8.742777 ACAAACTGATAATTTATGCAGACATGT 58.257 29.630 0.00 0.00 37.04 3.21
2280 2291 9.577110 CAAACTGATAATTTATGCAGACATGTT 57.423 29.630 0.00 0.00 37.04 2.71
2282 2293 9.577110 AACTGATAATTTATGCAGACATGTTTG 57.423 29.630 11.91 11.91 37.04 2.93
2283 2294 8.959548 ACTGATAATTTATGCAGACATGTTTGA 58.040 29.630 19.86 5.87 37.04 2.69
2284 2295 9.791820 CTGATAATTTATGCAGACATGTTTGAA 57.208 29.630 19.86 10.20 37.04 2.69
2293 2304 7.119605 TGCAGACATGTTTGAAAATATTTGC 57.880 32.000 19.86 0.00 0.00 3.68
2294 2305 6.704937 TGCAGACATGTTTGAAAATATTTGCA 59.295 30.769 19.86 4.62 32.14 4.08
2295 2306 7.095565 TGCAGACATGTTTGAAAATATTTGCAG 60.096 33.333 19.86 0.53 31.58 4.41
2296 2307 7.116662 GCAGACATGTTTGAAAATATTTGCAGA 59.883 33.333 19.86 2.16 0.00 4.26
2297 2308 9.146984 CAGACATGTTTGAAAATATTTGCAGAT 57.853 29.630 10.81 0.00 0.00 2.90
2298 2309 9.362539 AGACATGTTTGAAAATATTTGCAGATC 57.637 29.630 8.87 5.07 0.00 2.75
2299 2310 8.176814 ACATGTTTGAAAATATTTGCAGATCG 57.823 30.769 8.87 2.06 0.00 3.69
2300 2311 8.028354 ACATGTTTGAAAATATTTGCAGATCGA 58.972 29.630 8.87 0.00 0.00 3.59
2301 2312 8.862074 CATGTTTGAAAATATTTGCAGATCGAA 58.138 29.630 8.87 2.82 0.00 3.71
2302 2313 8.451687 TGTTTGAAAATATTTGCAGATCGAAG 57.548 30.769 8.87 0.00 0.00 3.79
2303 2314 8.296000 TGTTTGAAAATATTTGCAGATCGAAGA 58.704 29.630 8.87 1.71 45.75 2.87
2304 2315 8.792538 GTTTGAAAATATTTGCAGATCGAAGAG 58.207 33.333 8.87 0.00 43.63 2.85
2305 2316 7.019774 TGAAAATATTTGCAGATCGAAGAGG 57.980 36.000 4.62 0.00 43.63 3.69
2306 2317 6.823182 TGAAAATATTTGCAGATCGAAGAGGA 59.177 34.615 4.62 0.00 43.63 3.71
2307 2318 7.336679 TGAAAATATTTGCAGATCGAAGAGGAA 59.663 33.333 4.62 0.00 43.63 3.36
2308 2319 6.857777 AATATTTGCAGATCGAAGAGGAAG 57.142 37.500 0.00 0.00 43.63 3.46
2309 2320 3.961480 TTTGCAGATCGAAGAGGAAGA 57.039 42.857 0.00 0.00 43.63 2.87
2310 2321 3.961480 TTGCAGATCGAAGAGGAAGAA 57.039 42.857 0.00 0.00 43.63 2.52
2311 2322 3.238108 TGCAGATCGAAGAGGAAGAAC 57.762 47.619 0.00 0.00 43.63 3.01
2312 2323 2.093973 TGCAGATCGAAGAGGAAGAACC 60.094 50.000 0.00 0.00 43.63 3.62
2326 2337 5.836821 GGAAGAACCTTTGATGAATACCC 57.163 43.478 0.00 0.00 35.41 3.69
2327 2338 5.510430 GGAAGAACCTTTGATGAATACCCT 58.490 41.667 0.00 0.00 35.41 4.34
2328 2339 5.952347 GGAAGAACCTTTGATGAATACCCTT 59.048 40.000 0.00 0.00 35.41 3.95
2329 2340 6.127619 GGAAGAACCTTTGATGAATACCCTTG 60.128 42.308 0.00 0.00 35.41 3.61
2330 2341 5.892348 AGAACCTTTGATGAATACCCTTGT 58.108 37.500 0.00 0.00 0.00 3.16
2331 2342 7.027874 AGAACCTTTGATGAATACCCTTGTA 57.972 36.000 0.00 0.00 0.00 2.41
2332 2343 7.643123 AGAACCTTTGATGAATACCCTTGTAT 58.357 34.615 0.00 0.00 39.39 2.29
2333 2344 8.778059 AGAACCTTTGATGAATACCCTTGTATA 58.222 33.333 0.00 0.00 36.65 1.47
2334 2345 9.574516 GAACCTTTGATGAATACCCTTGTATAT 57.425 33.333 0.00 0.00 36.65 0.86
2335 2346 8.924511 ACCTTTGATGAATACCCTTGTATATG 57.075 34.615 0.00 0.00 36.65 1.78
2336 2347 7.448469 ACCTTTGATGAATACCCTTGTATATGC 59.552 37.037 0.00 0.00 36.65 3.14
2337 2348 7.094205 CCTTTGATGAATACCCTTGTATATGCC 60.094 40.741 0.00 0.00 36.65 4.40
2338 2349 5.815581 TGATGAATACCCTTGTATATGCCC 58.184 41.667 0.00 0.00 36.65 5.36
2339 2350 5.551583 TGATGAATACCCTTGTATATGCCCT 59.448 40.000 0.00 0.00 36.65 5.19
2340 2351 5.922960 TGAATACCCTTGTATATGCCCTT 57.077 39.130 0.00 0.00 36.65 3.95
2341 2352 7.238723 TGATGAATACCCTTGTATATGCCCTTA 59.761 37.037 0.00 0.00 36.65 2.69
2342 2353 7.016153 TGAATACCCTTGTATATGCCCTTAG 57.984 40.000 0.00 0.00 36.65 2.18
2343 2354 6.561070 TGAATACCCTTGTATATGCCCTTAGT 59.439 38.462 0.00 0.00 36.65 2.24
2344 2355 7.735777 TGAATACCCTTGTATATGCCCTTAGTA 59.264 37.037 0.00 0.00 36.65 1.82
2345 2356 7.735326 ATACCCTTGTATATGCCCTTAGTAG 57.265 40.000 0.00 0.00 35.89 2.57
2346 2357 4.286291 ACCCTTGTATATGCCCTTAGTAGC 59.714 45.833 0.00 0.00 0.00 3.58
2347 2358 4.532521 CCCTTGTATATGCCCTTAGTAGCT 59.467 45.833 0.00 0.00 0.00 3.32
2348 2359 5.013183 CCCTTGTATATGCCCTTAGTAGCTT 59.987 44.000 0.00 0.00 0.00 3.74
2349 2360 6.465894 CCCTTGTATATGCCCTTAGTAGCTTT 60.466 42.308 0.00 0.00 0.00 3.51
2350 2361 7.256547 CCCTTGTATATGCCCTTAGTAGCTTTA 60.257 40.741 0.00 0.00 0.00 1.85
2351 2362 7.819900 CCTTGTATATGCCCTTAGTAGCTTTAG 59.180 40.741 0.00 0.00 0.00 1.85
2352 2363 7.241042 TGTATATGCCCTTAGTAGCTTTAGG 57.759 40.000 0.00 0.00 0.00 2.69
2357 2368 3.744660 CCCTTAGTAGCTTTAGGGCATG 58.255 50.000 8.62 0.00 40.84 4.06
2358 2369 3.136626 CCCTTAGTAGCTTTAGGGCATGT 59.863 47.826 8.62 0.00 40.84 3.21
2359 2370 4.385310 CCCTTAGTAGCTTTAGGGCATGTT 60.385 45.833 8.62 0.00 40.84 2.71
2360 2371 5.193679 CCTTAGTAGCTTTAGGGCATGTTT 58.806 41.667 0.00 0.00 34.17 2.83
2361 2372 5.066505 CCTTAGTAGCTTTAGGGCATGTTTG 59.933 44.000 0.00 0.00 34.17 2.93
2362 2373 3.356290 AGTAGCTTTAGGGCATGTTTGG 58.644 45.455 0.00 0.00 34.17 3.28
2363 2374 2.309136 AGCTTTAGGGCATGTTTGGT 57.691 45.000 0.00 0.00 34.17 3.67
2364 2375 2.608623 AGCTTTAGGGCATGTTTGGTT 58.391 42.857 0.00 0.00 34.17 3.67
2365 2376 2.972021 AGCTTTAGGGCATGTTTGGTTT 59.028 40.909 0.00 0.00 34.17 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.818787 CACCATCGCTTGCCCAGC 61.819 66.667 0.00 0.00 46.31 4.85
7 8 2.898920 ATCCACCATCGCTTGCCCAG 62.899 60.000 0.00 0.00 0.00 4.45
8 9 2.497792 AATCCACCATCGCTTGCCCA 62.498 55.000 0.00 0.00 0.00 5.36
22 23 2.239402 TGATGTGCTGCTAGGAAATCCA 59.761 45.455 0.00 0.00 38.89 3.41
238 239 9.252962 CGAAAAAGGAAGTCAAAAGTAGTAGTA 57.747 33.333 0.00 0.00 0.00 1.82
294 295 8.980481 TCTTATTCTTCTGAACAAGGAAAAGT 57.020 30.769 0.00 0.00 37.33 2.66
324 325 9.165035 CATTTTCCATATGTAAGCCACAATTTT 57.835 29.630 1.24 0.00 41.55 1.82
576 579 5.067544 GCATAGGAGAACTACTAACTTCCGT 59.932 44.000 0.00 0.00 33.70 4.69
632 635 6.766429 ACGTGGTTCCTTTTCTTTCTATACT 58.234 36.000 0.00 0.00 0.00 2.12
677 680 7.445945 CCAGGAATAAGTACTTATCCCTCTTG 58.554 42.308 25.94 22.78 38.07 3.02
877 881 6.460781 ACGAGGCCGATAAATTGATATTACA 58.539 36.000 0.00 0.00 39.50 2.41
928 932 5.373854 AGTCCCCCATATAGCTGAGAATTTT 59.626 40.000 0.00 0.00 0.00 1.82
1050 1054 1.381928 TAGTTCGAGCTAGGCGGTGG 61.382 60.000 4.72 0.00 0.00 4.61
1069 1073 7.754625 ACCATAAGTTTTATTACATCGCGTTT 58.245 30.769 5.77 0.00 0.00 3.60
1100 1104 8.004344 CGCATATTGGCTTTATATTATCTACGC 58.996 37.037 0.00 0.00 0.00 4.42
1128 1132 2.367567 TGTGACTCCTACTTTGACCACC 59.632 50.000 0.00 0.00 0.00 4.61
1147 1151 7.420214 CCCAGGAACATCATAAATAGTACCTGT 60.420 40.741 0.00 0.00 39.30 4.00
1379 1383 8.475639 CGCACACTATATAGGGGTATAGAAAAT 58.524 37.037 16.40 0.00 37.83 1.82
1380 1384 7.093640 CCGCACACTATATAGGGGTATAGAAAA 60.094 40.741 16.40 0.00 37.83 2.29
1381 1385 6.379133 CCGCACACTATATAGGGGTATAGAAA 59.621 42.308 16.40 0.00 37.83 2.52
1382 1386 5.889853 CCGCACACTATATAGGGGTATAGAA 59.110 44.000 16.40 0.00 37.83 2.10
1406 1410 5.912955 CCAACGAACATCTTTCAAAGTTACC 59.087 40.000 0.00 0.00 0.00 2.85
1407 1411 6.721321 TCCAACGAACATCTTTCAAAGTTAC 58.279 36.000 0.00 0.00 0.00 2.50
1442 1446 1.248101 TTCCATCTCTGCACCGTCGA 61.248 55.000 0.00 0.00 0.00 4.20
1482 1486 9.337714 TCTGGTGGAATATAGATGATATCCAAA 57.662 33.333 0.00 0.00 33.32 3.28
1497 1501 3.772387 TGTGGCAAAATCTGGTGGAATA 58.228 40.909 0.00 0.00 0.00 1.75
1530 1534 2.683211 AGTTCAACCATGGAGCCTTT 57.317 45.000 21.47 0.00 0.00 3.11
1534 1538 2.819608 TGCTTAAGTTCAACCATGGAGC 59.180 45.455 21.47 13.94 0.00 4.70
1577 1581 8.691661 ATTCTAAAACAAAGGAGAAGTGCTTA 57.308 30.769 0.00 0.00 32.16 3.09
1596 1600 7.606456 GGGCAATTATGATACGGAAGATTCTAA 59.394 37.037 0.00 0.00 0.00 2.10
1966 1977 7.267857 AGCACTTTGAATTTGTCTAGCTTTTT 58.732 30.769 0.00 0.00 0.00 1.94
1967 1978 6.809869 AGCACTTTGAATTTGTCTAGCTTTT 58.190 32.000 0.00 0.00 0.00 2.27
1968 1979 6.396829 AGCACTTTGAATTTGTCTAGCTTT 57.603 33.333 0.00 0.00 0.00 3.51
1969 1980 5.048434 GGAGCACTTTGAATTTGTCTAGCTT 60.048 40.000 0.00 0.00 0.00 3.74
1970 1981 4.457257 GGAGCACTTTGAATTTGTCTAGCT 59.543 41.667 0.00 0.00 0.00 3.32
1971 1982 4.216257 TGGAGCACTTTGAATTTGTCTAGC 59.784 41.667 0.00 0.00 0.00 3.42
1972 1983 5.106396 CCTGGAGCACTTTGAATTTGTCTAG 60.106 44.000 0.00 0.00 0.00 2.43
1973 1984 4.761739 CCTGGAGCACTTTGAATTTGTCTA 59.238 41.667 0.00 0.00 0.00 2.59
1974 1985 3.571401 CCTGGAGCACTTTGAATTTGTCT 59.429 43.478 0.00 0.00 0.00 3.41
1975 1986 3.858503 GCCTGGAGCACTTTGAATTTGTC 60.859 47.826 0.00 0.00 42.97 3.18
1976 1987 2.036346 GCCTGGAGCACTTTGAATTTGT 59.964 45.455 0.00 0.00 42.97 2.83
1977 1988 2.611224 GGCCTGGAGCACTTTGAATTTG 60.611 50.000 0.00 0.00 46.50 2.32
1978 1989 1.620323 GGCCTGGAGCACTTTGAATTT 59.380 47.619 0.00 0.00 46.50 1.82
1979 1990 1.260544 GGCCTGGAGCACTTTGAATT 58.739 50.000 0.00 0.00 46.50 2.17
1980 1991 0.112995 TGGCCTGGAGCACTTTGAAT 59.887 50.000 3.32 0.00 46.50 2.57
1981 1992 0.106268 TTGGCCTGGAGCACTTTGAA 60.106 50.000 3.32 0.00 46.50 2.69
1982 1993 0.112995 ATTGGCCTGGAGCACTTTGA 59.887 50.000 3.32 0.00 46.50 2.69
1983 1994 0.971386 AATTGGCCTGGAGCACTTTG 59.029 50.000 3.32 0.00 46.50 2.77
1984 1995 0.971386 CAATTGGCCTGGAGCACTTT 59.029 50.000 3.32 0.00 46.50 2.66
1985 1996 0.901580 CCAATTGGCCTGGAGCACTT 60.902 55.000 12.53 0.00 46.50 3.16
1986 1997 1.304713 CCAATTGGCCTGGAGCACT 60.305 57.895 12.53 0.00 46.50 4.40
1987 1998 3.291611 CCAATTGGCCTGGAGCAC 58.708 61.111 12.53 0.00 46.50 4.40
1998 2009 3.075884 CAAACCATTCCAAGGCCAATTG 58.924 45.455 5.01 0.63 0.00 2.32
1999 2010 2.978278 TCAAACCATTCCAAGGCCAATT 59.022 40.909 5.01 0.00 0.00 2.32
2000 2011 2.568509 CTCAAACCATTCCAAGGCCAAT 59.431 45.455 5.01 0.00 0.00 3.16
2001 2012 1.969923 CTCAAACCATTCCAAGGCCAA 59.030 47.619 5.01 0.00 0.00 4.52
2002 2013 1.631405 CTCAAACCATTCCAAGGCCA 58.369 50.000 5.01 0.00 0.00 5.36
2003 2014 0.897621 CCTCAAACCATTCCAAGGCC 59.102 55.000 0.00 0.00 0.00 5.19
2004 2015 1.923356 TCCTCAAACCATTCCAAGGC 58.077 50.000 0.00 0.00 0.00 4.35
2005 2016 2.232208 GCTTCCTCAAACCATTCCAAGG 59.768 50.000 0.00 0.00 0.00 3.61
2006 2017 3.160269 AGCTTCCTCAAACCATTCCAAG 58.840 45.455 0.00 0.00 0.00 3.61
2007 2018 3.243359 AGCTTCCTCAAACCATTCCAA 57.757 42.857 0.00 0.00 0.00 3.53
2008 2019 2.978156 AGCTTCCTCAAACCATTCCA 57.022 45.000 0.00 0.00 0.00 3.53
2009 2020 2.493675 GGAAGCTTCCTCAAACCATTCC 59.506 50.000 33.98 7.36 44.11 3.01
2010 2021 3.857549 GGAAGCTTCCTCAAACCATTC 57.142 47.619 33.98 6.71 44.11 2.67
2021 2032 2.753446 GCCAGCCTGGAAGCTTCC 60.753 66.667 34.48 34.48 42.61 3.46
2022 2033 2.753446 GGCCAGCCTGGAAGCTTC 60.753 66.667 16.85 18.54 42.61 3.86
2023 2034 3.583380 TGGCCAGCCTGGAAGCTT 61.583 61.111 16.85 0.00 42.61 3.74
2024 2035 4.357279 GTGGCCAGCCTGGAAGCT 62.357 66.667 16.85 0.00 46.45 3.74
2025 2036 3.951769 ATGTGGCCAGCCTGGAAGC 62.952 63.158 16.85 3.34 40.96 3.86
2026 2037 2.050350 CATGTGGCCAGCCTGGAAG 61.050 63.158 16.85 0.00 40.96 3.46
2027 2038 2.036098 CATGTGGCCAGCCTGGAA 59.964 61.111 16.85 0.00 40.96 3.53
2028 2039 4.051167 CCATGTGGCCAGCCTGGA 62.051 66.667 16.85 0.00 40.96 3.86
2030 2041 4.051167 TCCCATGTGGCCAGCCTG 62.051 66.667 5.11 3.57 36.94 4.85
2031 2042 3.736224 CTCCCATGTGGCCAGCCT 61.736 66.667 5.11 0.00 36.94 4.58
2032 2043 2.210144 TAACTCCCATGTGGCCAGCC 62.210 60.000 5.11 0.38 0.00 4.85
2033 2044 0.323360 TTAACTCCCATGTGGCCAGC 60.323 55.000 5.11 1.20 0.00 4.85
2034 2045 1.818674 GTTTAACTCCCATGTGGCCAG 59.181 52.381 5.11 0.00 0.00 4.85
2035 2046 1.549037 GGTTTAACTCCCATGTGGCCA 60.549 52.381 0.00 0.00 0.00 5.36
2036 2047 1.182667 GGTTTAACTCCCATGTGGCC 58.817 55.000 0.00 0.00 0.00 5.36
2037 2048 1.917872 TGGTTTAACTCCCATGTGGC 58.082 50.000 0.00 0.00 0.00 5.01
2038 2049 4.855340 ACTATGGTTTAACTCCCATGTGG 58.145 43.478 9.66 0.00 41.51 4.17
2039 2050 6.403200 CGAAACTATGGTTTAACTCCCATGTG 60.403 42.308 7.22 6.22 44.58 3.21
2040 2051 5.646360 CGAAACTATGGTTTAACTCCCATGT 59.354 40.000 7.22 4.88 44.58 3.21
2041 2052 5.878116 TCGAAACTATGGTTTAACTCCCATG 59.122 40.000 7.22 0.00 44.58 3.66
2042 2053 6.057321 TCGAAACTATGGTTTAACTCCCAT 57.943 37.500 7.22 5.95 44.58 4.00
2043 2054 5.486735 TCGAAACTATGGTTTAACTCCCA 57.513 39.130 7.22 0.00 44.58 4.37
2044 2055 5.936372 ACTTCGAAACTATGGTTTAACTCCC 59.064 40.000 7.22 0.00 44.58 4.30
2045 2056 7.430992 AACTTCGAAACTATGGTTTAACTCC 57.569 36.000 7.22 0.00 44.58 3.85
2047 2058 9.551734 ACTAAACTTCGAAACTATGGTTTAACT 57.448 29.630 7.22 5.30 44.58 2.24
2052 2063 9.939802 AGATAACTAAACTTCGAAACTATGGTT 57.060 29.630 0.00 3.49 37.24 3.67
2076 2087 9.817809 GTTCAAACATAGGACATAGTTCATAGA 57.182 33.333 0.00 0.00 0.00 1.98
2077 2088 9.046296 GGTTCAAACATAGGACATAGTTCATAG 57.954 37.037 0.00 0.00 0.00 2.23
2078 2089 8.544622 TGGTTCAAACATAGGACATAGTTCATA 58.455 33.333 0.00 0.00 0.00 2.15
2079 2090 7.402054 TGGTTCAAACATAGGACATAGTTCAT 58.598 34.615 0.00 0.00 0.00 2.57
2080 2091 6.774673 TGGTTCAAACATAGGACATAGTTCA 58.225 36.000 0.00 0.00 0.00 3.18
2081 2092 7.865706 ATGGTTCAAACATAGGACATAGTTC 57.134 36.000 0.00 0.00 0.00 3.01
2082 2093 9.174166 GTAATGGTTCAAACATAGGACATAGTT 57.826 33.333 0.00 0.00 0.00 2.24
2083 2094 8.548877 AGTAATGGTTCAAACATAGGACATAGT 58.451 33.333 0.00 0.00 0.00 2.12
2084 2095 8.830580 CAGTAATGGTTCAAACATAGGACATAG 58.169 37.037 0.00 0.00 0.00 2.23
2085 2096 8.325787 ACAGTAATGGTTCAAACATAGGACATA 58.674 33.333 0.00 0.00 0.00 2.29
2086 2097 7.121168 CACAGTAATGGTTCAAACATAGGACAT 59.879 37.037 0.00 0.00 0.00 3.06
2087 2098 6.429692 CACAGTAATGGTTCAAACATAGGACA 59.570 38.462 0.00 0.00 0.00 4.02
2088 2099 6.430000 ACACAGTAATGGTTCAAACATAGGAC 59.570 38.462 0.00 0.00 0.00 3.85
2089 2100 6.539173 ACACAGTAATGGTTCAAACATAGGA 58.461 36.000 0.00 0.00 0.00 2.94
2090 2101 6.817765 ACACAGTAATGGTTCAAACATAGG 57.182 37.500 0.00 0.00 0.00 2.57
2094 2105 9.508642 TGATTATACACAGTAATGGTTCAAACA 57.491 29.630 0.00 0.00 0.00 2.83
2097 2108 9.679661 ACATGATTATACACAGTAATGGTTCAA 57.320 29.630 0.00 0.00 0.00 2.69
2098 2109 9.679661 AACATGATTATACACAGTAATGGTTCA 57.320 29.630 0.00 0.00 0.00 3.18
2100 2111 8.826710 CGAACATGATTATACACAGTAATGGTT 58.173 33.333 0.00 0.00 0.00 3.67
2101 2112 8.201464 TCGAACATGATTATACACAGTAATGGT 58.799 33.333 0.00 0.00 0.00 3.55
2102 2113 8.487970 GTCGAACATGATTATACACAGTAATGG 58.512 37.037 0.00 0.00 0.00 3.16
2103 2114 8.207906 CGTCGAACATGATTATACACAGTAATG 58.792 37.037 0.00 0.00 0.00 1.90
2104 2115 7.919091 ACGTCGAACATGATTATACACAGTAAT 59.081 33.333 0.00 0.00 0.00 1.89
2105 2116 7.252708 ACGTCGAACATGATTATACACAGTAA 58.747 34.615 0.00 0.00 0.00 2.24
2106 2117 6.788243 ACGTCGAACATGATTATACACAGTA 58.212 36.000 0.00 0.00 0.00 2.74
2107 2118 5.647589 ACGTCGAACATGATTATACACAGT 58.352 37.500 0.00 0.00 0.00 3.55
2108 2119 5.173312 GGACGTCGAACATGATTATACACAG 59.827 44.000 9.92 0.00 0.00 3.66
2109 2120 5.038683 GGACGTCGAACATGATTATACACA 58.961 41.667 9.92 0.00 0.00 3.72
2110 2121 5.279384 AGGACGTCGAACATGATTATACAC 58.721 41.667 9.92 0.00 0.00 2.90
2111 2122 5.509716 AGGACGTCGAACATGATTATACA 57.490 39.130 9.92 0.00 0.00 2.29
2112 2123 7.082602 ACATAGGACGTCGAACATGATTATAC 58.917 38.462 18.32 0.00 0.00 1.47
2113 2124 7.210718 ACATAGGACGTCGAACATGATTATA 57.789 36.000 18.32 0.00 0.00 0.98
2114 2125 6.085555 ACATAGGACGTCGAACATGATTAT 57.914 37.500 18.32 2.22 0.00 1.28
2115 2126 5.509716 ACATAGGACGTCGAACATGATTA 57.490 39.130 18.32 0.39 0.00 1.75
2116 2127 4.386867 ACATAGGACGTCGAACATGATT 57.613 40.909 18.32 0.00 0.00 2.57
2117 2128 4.386867 AACATAGGACGTCGAACATGAT 57.613 40.909 18.32 8.48 0.00 2.45
2118 2129 3.861276 AACATAGGACGTCGAACATGA 57.139 42.857 18.32 0.00 0.00 3.07
2119 2130 3.924073 TCAAACATAGGACGTCGAACATG 59.076 43.478 9.92 11.74 0.00 3.21
2120 2131 4.182693 TCAAACATAGGACGTCGAACAT 57.817 40.909 9.92 0.00 0.00 2.71
2121 2132 3.646611 TCAAACATAGGACGTCGAACA 57.353 42.857 9.92 0.00 0.00 3.18
2122 2133 3.985925 AGTTCAAACATAGGACGTCGAAC 59.014 43.478 9.92 13.84 33.41 3.95
2123 2134 4.247267 AGTTCAAACATAGGACGTCGAA 57.753 40.909 9.92 1.79 0.00 3.71
2124 2135 3.928727 AGTTCAAACATAGGACGTCGA 57.071 42.857 9.92 0.00 0.00 4.20
2125 2136 5.159209 ACTTAGTTCAAACATAGGACGTCG 58.841 41.667 9.92 0.00 0.00 5.12
2126 2137 7.417496 AAACTTAGTTCAAACATAGGACGTC 57.583 36.000 7.13 7.13 0.00 4.34
2127 2138 8.932791 CATAAACTTAGTTCAAACATAGGACGT 58.067 33.333 0.00 0.00 0.00 4.34
2128 2139 9.146984 TCATAAACTTAGTTCAAACATAGGACG 57.853 33.333 0.00 0.00 0.00 4.79
2134 2145 8.793592 GGAGGTTCATAAACTTAGTTCAAACAT 58.206 33.333 0.00 0.00 35.61 2.71
2135 2146 7.996644 AGGAGGTTCATAAACTTAGTTCAAACA 59.003 33.333 0.00 0.00 35.61 2.83
2136 2147 8.392372 AGGAGGTTCATAAACTTAGTTCAAAC 57.608 34.615 0.00 1.41 35.61 2.93
2146 2157 9.838339 CTTGTGAATATAGGAGGTTCATAAACT 57.162 33.333 0.00 0.00 34.22 2.66
2147 2158 8.560374 GCTTGTGAATATAGGAGGTTCATAAAC 58.440 37.037 0.00 0.00 34.22 2.01
2148 2159 8.271458 TGCTTGTGAATATAGGAGGTTCATAAA 58.729 33.333 0.00 0.00 34.22 1.40
2149 2160 7.801104 TGCTTGTGAATATAGGAGGTTCATAA 58.199 34.615 0.00 0.00 34.71 1.90
2150 2161 7.373617 TGCTTGTGAATATAGGAGGTTCATA 57.626 36.000 0.00 0.00 34.71 2.15
2151 2162 6.252599 TGCTTGTGAATATAGGAGGTTCAT 57.747 37.500 0.00 0.00 34.71 2.57
2152 2163 5.692115 TGCTTGTGAATATAGGAGGTTCA 57.308 39.130 0.00 0.00 0.00 3.18
2153 2164 7.573968 AAATGCTTGTGAATATAGGAGGTTC 57.426 36.000 0.00 0.00 0.00 3.62
2154 2165 9.646522 AATAAATGCTTGTGAATATAGGAGGTT 57.353 29.630 0.00 0.00 0.00 3.50
2155 2166 9.646522 AAATAAATGCTTGTGAATATAGGAGGT 57.353 29.630 0.00 0.00 0.00 3.85
2156 2167 9.903682 CAAATAAATGCTTGTGAATATAGGAGG 57.096 33.333 0.00 0.00 0.00 4.30
2162 2173 8.970020 TGGAGACAAATAAATGCTTGTGAATAT 58.030 29.630 0.00 0.00 35.93 1.28
2163 2174 8.347004 TGGAGACAAATAAATGCTTGTGAATA 57.653 30.769 0.00 0.00 35.93 1.75
2164 2175 7.230849 TGGAGACAAATAAATGCTTGTGAAT 57.769 32.000 0.00 0.00 35.93 2.57
2165 2176 6.647334 TGGAGACAAATAAATGCTTGTGAA 57.353 33.333 0.00 0.00 35.93 3.18
2180 2191 7.403312 TTTCAGACTGAAAATTTGGAGACAA 57.597 32.000 24.92 1.16 45.04 3.18
2191 2202 7.176409 GCTTTCTGCCATTTTCAGACTGAAAA 61.176 38.462 34.12 34.12 45.89 2.29
2192 2203 5.737063 GCTTTCTGCCATTTTCAGACTGAAA 60.737 40.000 23.67 23.67 39.99 2.69
2193 2204 4.261741 GCTTTCTGCCATTTTCAGACTGAA 60.262 41.667 13.99 13.99 39.99 3.02
2194 2205 3.254166 GCTTTCTGCCATTTTCAGACTGA 59.746 43.478 0.00 0.00 39.99 3.41
2195 2206 3.005050 TGCTTTCTGCCATTTTCAGACTG 59.995 43.478 0.00 0.00 39.99 3.51
2196 2207 3.225104 TGCTTTCTGCCATTTTCAGACT 58.775 40.909 0.00 0.00 39.99 3.24
2197 2208 3.648339 TGCTTTCTGCCATTTTCAGAC 57.352 42.857 0.00 0.00 39.99 3.51
2198 2209 4.669206 TTTGCTTTCTGCCATTTTCAGA 57.331 36.364 0.00 0.00 42.00 3.27
2199 2210 4.153475 CCATTTGCTTTCTGCCATTTTCAG 59.847 41.667 0.00 0.00 42.00 3.02
2200 2211 4.066490 CCATTTGCTTTCTGCCATTTTCA 58.934 39.130 0.00 0.00 42.00 2.69
2201 2212 3.437741 CCCATTTGCTTTCTGCCATTTTC 59.562 43.478 0.00 0.00 42.00 2.29
2202 2213 3.414269 CCCATTTGCTTTCTGCCATTTT 58.586 40.909 0.00 0.00 42.00 1.82
2203 2214 2.290450 CCCCATTTGCTTTCTGCCATTT 60.290 45.455 0.00 0.00 42.00 2.32
2204 2215 1.279846 CCCCATTTGCTTTCTGCCATT 59.720 47.619 0.00 0.00 42.00 3.16
2205 2216 0.906775 CCCCATTTGCTTTCTGCCAT 59.093 50.000 0.00 0.00 42.00 4.40
2206 2217 1.193462 CCCCCATTTGCTTTCTGCCA 61.193 55.000 0.00 0.00 42.00 4.92
2207 2218 0.904394 TCCCCCATTTGCTTTCTGCC 60.904 55.000 0.00 0.00 42.00 4.85
2208 2219 1.134610 CATCCCCCATTTGCTTTCTGC 60.135 52.381 0.00 0.00 43.25 4.26
2209 2220 2.167075 GACATCCCCCATTTGCTTTCTG 59.833 50.000 0.00 0.00 0.00 3.02
2210 2221 2.460669 GACATCCCCCATTTGCTTTCT 58.539 47.619 0.00 0.00 0.00 2.52
2211 2222 1.134946 CGACATCCCCCATTTGCTTTC 59.865 52.381 0.00 0.00 0.00 2.62
2212 2223 1.185315 CGACATCCCCCATTTGCTTT 58.815 50.000 0.00 0.00 0.00 3.51
2213 2224 0.331278 TCGACATCCCCCATTTGCTT 59.669 50.000 0.00 0.00 0.00 3.91
2214 2225 0.552848 ATCGACATCCCCCATTTGCT 59.447 50.000 0.00 0.00 0.00 3.91
2215 2226 0.670162 CATCGACATCCCCCATTTGC 59.330 55.000 0.00 0.00 0.00 3.68
2216 2227 1.321474 CCATCGACATCCCCCATTTG 58.679 55.000 0.00 0.00 0.00 2.32
2217 2228 0.185901 CCCATCGACATCCCCCATTT 59.814 55.000 0.00 0.00 0.00 2.32
2218 2229 1.846261 CCCATCGACATCCCCCATT 59.154 57.895 0.00 0.00 0.00 3.16
2219 2230 2.833913 GCCCATCGACATCCCCCAT 61.834 63.158 0.00 0.00 0.00 4.00
2220 2231 3.488569 GCCCATCGACATCCCCCA 61.489 66.667 0.00 0.00 0.00 4.96
2221 2232 3.171388 AGCCCATCGACATCCCCC 61.171 66.667 0.00 0.00 0.00 5.40
2222 2233 2.427753 GAGCCCATCGACATCCCC 59.572 66.667 0.00 0.00 0.00 4.81
2223 2234 1.772819 ATGGAGCCCATCGACATCCC 61.773 60.000 1.21 0.00 40.74 3.85
2224 2235 0.976641 TATGGAGCCCATCGACATCC 59.023 55.000 9.67 0.00 40.74 3.51
2225 2236 1.620819 ACTATGGAGCCCATCGACATC 59.379 52.381 9.67 0.00 40.74 3.06
2226 2237 1.722034 ACTATGGAGCCCATCGACAT 58.278 50.000 9.67 0.00 40.74 3.06
2227 2238 1.496060 AACTATGGAGCCCATCGACA 58.504 50.000 9.67 0.00 40.74 4.35
2228 2239 2.158957 TGAAACTATGGAGCCCATCGAC 60.159 50.000 9.67 3.90 40.74 4.20
2229 2240 2.115427 TGAAACTATGGAGCCCATCGA 58.885 47.619 9.67 0.00 40.74 3.59
2230 2241 2.620251 TGAAACTATGGAGCCCATCG 57.380 50.000 9.67 7.01 40.74 3.84
2245 2256 9.585099 GCATAAATTATCAGTTTGTCCATGAAA 57.415 29.630 0.00 0.00 0.00 2.69
2246 2257 8.747471 TGCATAAATTATCAGTTTGTCCATGAA 58.253 29.630 0.00 0.00 0.00 2.57
2247 2258 8.291191 TGCATAAATTATCAGTTTGTCCATGA 57.709 30.769 0.00 0.00 0.00 3.07
2248 2259 8.407832 TCTGCATAAATTATCAGTTTGTCCATG 58.592 33.333 0.00 0.00 0.00 3.66
2249 2260 8.408601 GTCTGCATAAATTATCAGTTTGTCCAT 58.591 33.333 0.00 0.00 0.00 3.41
2250 2261 7.392953 TGTCTGCATAAATTATCAGTTTGTCCA 59.607 33.333 0.00 0.00 0.00 4.02
2251 2262 7.761409 TGTCTGCATAAATTATCAGTTTGTCC 58.239 34.615 0.00 0.00 0.00 4.02
2252 2263 9.229784 CATGTCTGCATAAATTATCAGTTTGTC 57.770 33.333 0.00 0.00 33.30 3.18
2253 2264 8.742777 ACATGTCTGCATAAATTATCAGTTTGT 58.257 29.630 0.00 9.57 33.30 2.83
2254 2265 9.577110 AACATGTCTGCATAAATTATCAGTTTG 57.423 29.630 0.00 9.19 33.30 2.93
2256 2267 9.577110 CAAACATGTCTGCATAAATTATCAGTT 57.423 29.630 0.00 0.00 33.30 3.16
2257 2268 8.959548 TCAAACATGTCTGCATAAATTATCAGT 58.040 29.630 0.00 0.00 33.30 3.41
2258 2269 9.791820 TTCAAACATGTCTGCATAAATTATCAG 57.208 29.630 0.00 6.28 33.30 2.90
2267 2278 8.871862 GCAAATATTTTCAAACATGTCTGCATA 58.128 29.630 0.00 0.00 33.30 3.14
2268 2279 7.388224 TGCAAATATTTTCAAACATGTCTGCAT 59.612 29.630 0.00 0.00 35.32 3.96
2269 2280 6.704937 TGCAAATATTTTCAAACATGTCTGCA 59.295 30.769 0.00 0.00 0.00 4.41
2270 2281 7.116662 TCTGCAAATATTTTCAAACATGTCTGC 59.883 33.333 0.00 0.00 0.00 4.26
2271 2282 8.523523 TCTGCAAATATTTTCAAACATGTCTG 57.476 30.769 0.00 0.00 0.00 3.51
2272 2283 9.362539 GATCTGCAAATATTTTCAAACATGTCT 57.637 29.630 0.00 0.00 0.00 3.41
2273 2284 8.316046 CGATCTGCAAATATTTTCAAACATGTC 58.684 33.333 0.00 0.00 0.00 3.06
2274 2285 8.028354 TCGATCTGCAAATATTTTCAAACATGT 58.972 29.630 0.00 0.00 0.00 3.21
2275 2286 8.397215 TCGATCTGCAAATATTTTCAAACATG 57.603 30.769 0.00 0.00 0.00 3.21
2276 2287 8.984891 TTCGATCTGCAAATATTTTCAAACAT 57.015 26.923 0.00 0.00 0.00 2.71
2277 2288 8.296000 TCTTCGATCTGCAAATATTTTCAAACA 58.704 29.630 0.00 0.00 0.00 2.83
2278 2289 8.673626 TCTTCGATCTGCAAATATTTTCAAAC 57.326 30.769 0.00 0.00 0.00 2.93
2279 2290 7.970061 CCTCTTCGATCTGCAAATATTTTCAAA 59.030 33.333 0.00 0.00 0.00 2.69
2280 2291 7.336679 TCCTCTTCGATCTGCAAATATTTTCAA 59.663 33.333 0.00 0.00 0.00 2.69
2281 2292 6.823182 TCCTCTTCGATCTGCAAATATTTTCA 59.177 34.615 0.00 0.00 0.00 2.69
2282 2293 7.251704 TCCTCTTCGATCTGCAAATATTTTC 57.748 36.000 0.00 0.00 0.00 2.29
2283 2294 7.554118 TCTTCCTCTTCGATCTGCAAATATTTT 59.446 33.333 0.00 0.00 0.00 1.82
2284 2295 7.050377 TCTTCCTCTTCGATCTGCAAATATTT 58.950 34.615 0.00 0.00 0.00 1.40
2285 2296 6.586344 TCTTCCTCTTCGATCTGCAAATATT 58.414 36.000 0.00 0.00 0.00 1.28
2286 2297 6.166984 TCTTCCTCTTCGATCTGCAAATAT 57.833 37.500 0.00 0.00 0.00 1.28
2287 2298 5.598416 TCTTCCTCTTCGATCTGCAAATA 57.402 39.130 0.00 0.00 0.00 1.40
2288 2299 4.478206 TCTTCCTCTTCGATCTGCAAAT 57.522 40.909 0.00 0.00 0.00 2.32
2289 2300 3.961480 TCTTCCTCTTCGATCTGCAAA 57.039 42.857 0.00 0.00 0.00 3.68
2290 2301 3.589988 GTTCTTCCTCTTCGATCTGCAA 58.410 45.455 0.00 0.00 0.00 4.08
2291 2302 2.093973 GGTTCTTCCTCTTCGATCTGCA 60.094 50.000 0.00 0.00 0.00 4.41
2292 2303 2.167487 AGGTTCTTCCTCTTCGATCTGC 59.833 50.000 0.00 0.00 44.42 4.26
2304 2315 5.510430 AGGGTATTCATCAAAGGTTCTTCC 58.490 41.667 0.00 0.00 0.00 3.46
2305 2316 6.434340 ACAAGGGTATTCATCAAAGGTTCTTC 59.566 38.462 0.00 0.00 0.00 2.87
2306 2317 6.314917 ACAAGGGTATTCATCAAAGGTTCTT 58.685 36.000 0.00 0.00 0.00 2.52
2307 2318 5.892348 ACAAGGGTATTCATCAAAGGTTCT 58.108 37.500 0.00 0.00 0.00 3.01
2308 2319 7.881775 ATACAAGGGTATTCATCAAAGGTTC 57.118 36.000 0.00 0.00 36.85 3.62
2309 2320 9.354673 CATATACAAGGGTATTCATCAAAGGTT 57.645 33.333 0.00 0.00 40.61 3.50
2310 2321 7.448469 GCATATACAAGGGTATTCATCAAAGGT 59.552 37.037 0.00 0.00 40.61 3.50
2311 2322 7.094205 GGCATATACAAGGGTATTCATCAAAGG 60.094 40.741 0.00 0.00 40.61 3.11
2312 2323 7.094205 GGGCATATACAAGGGTATTCATCAAAG 60.094 40.741 0.00 0.00 40.61 2.77
2313 2324 6.719370 GGGCATATACAAGGGTATTCATCAAA 59.281 38.462 0.00 0.00 40.61 2.69
2314 2325 6.045459 AGGGCATATACAAGGGTATTCATCAA 59.955 38.462 0.00 0.00 40.61 2.57
2315 2326 5.551583 AGGGCATATACAAGGGTATTCATCA 59.448 40.000 0.00 0.00 40.61 3.07
2316 2327 6.067217 AGGGCATATACAAGGGTATTCATC 57.933 41.667 0.00 0.00 40.61 2.92
2317 2328 6.468972 AAGGGCATATACAAGGGTATTCAT 57.531 37.500 0.00 0.00 40.61 2.57
2318 2329 5.922960 AAGGGCATATACAAGGGTATTCA 57.077 39.130 0.00 0.00 40.61 2.57
2319 2330 7.017319 ACTAAGGGCATATACAAGGGTATTC 57.983 40.000 0.00 0.00 40.61 1.75
2320 2331 7.311109 GCTACTAAGGGCATATACAAGGGTATT 60.311 40.741 0.00 0.00 40.61 1.89
2321 2332 6.156429 GCTACTAAGGGCATATACAAGGGTAT 59.844 42.308 0.00 0.00 42.71 2.73
2322 2333 5.482878 GCTACTAAGGGCATATACAAGGGTA 59.517 44.000 0.00 0.00 0.00 3.69
2323 2334 4.286291 GCTACTAAGGGCATATACAAGGGT 59.714 45.833 0.00 0.00 0.00 4.34
2324 2335 4.532521 AGCTACTAAGGGCATATACAAGGG 59.467 45.833 0.00 0.00 0.00 3.95
2325 2336 5.746990 AGCTACTAAGGGCATATACAAGG 57.253 43.478 0.00 0.00 0.00 3.61
2326 2337 7.819900 CCTAAAGCTACTAAGGGCATATACAAG 59.180 40.741 0.00 0.00 0.00 3.16
2327 2338 7.256547 CCCTAAAGCTACTAAGGGCATATACAA 60.257 40.741 9.06 0.00 42.22 2.41
2328 2339 6.212791 CCCTAAAGCTACTAAGGGCATATACA 59.787 42.308 9.06 0.00 42.22 2.29
2329 2340 6.641474 CCCTAAAGCTACTAAGGGCATATAC 58.359 44.000 9.06 0.00 42.22 1.47
2330 2341 6.869206 CCCTAAAGCTACTAAGGGCATATA 57.131 41.667 9.06 0.00 42.22 0.86
2331 2342 5.763876 CCCTAAAGCTACTAAGGGCATAT 57.236 43.478 9.06 0.00 42.22 1.78
2337 2348 4.423625 ACATGCCCTAAAGCTACTAAGG 57.576 45.455 0.00 0.00 0.00 2.69
2338 2349 5.066505 CCAAACATGCCCTAAAGCTACTAAG 59.933 44.000 0.00 0.00 0.00 2.18
2339 2350 4.947388 CCAAACATGCCCTAAAGCTACTAA 59.053 41.667 0.00 0.00 0.00 2.24
2340 2351 4.018779 ACCAAACATGCCCTAAAGCTACTA 60.019 41.667 0.00 0.00 0.00 1.82
2341 2352 3.245264 ACCAAACATGCCCTAAAGCTACT 60.245 43.478 0.00 0.00 0.00 2.57
2342 2353 3.089284 ACCAAACATGCCCTAAAGCTAC 58.911 45.455 0.00 0.00 0.00 3.58
2343 2354 3.449746 ACCAAACATGCCCTAAAGCTA 57.550 42.857 0.00 0.00 0.00 3.32
2344 2355 2.309136 ACCAAACATGCCCTAAAGCT 57.691 45.000 0.00 0.00 0.00 3.74
2345 2356 3.401033 AAACCAAACATGCCCTAAAGC 57.599 42.857 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.