Multiple sequence alignment - TraesCS4B01G031400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G031400 chr4B 100.000 2762 0 0 1 2762 23419216 23416455 0.000000e+00 5101.0
1 TraesCS4B01G031400 chr4B 88.629 1196 65 33 862 2030 23401362 23402513 0.000000e+00 1389.0
2 TraesCS4B01G031400 chr4D 88.851 1462 92 30 589 2019 12719426 12718005 0.000000e+00 1731.0
3 TraesCS4B01G031400 chr4D 86.899 1435 98 42 641 2028 12696513 12697904 0.000000e+00 1526.0
4 TraesCS4B01G031400 chr4D 87.636 461 44 8 2111 2567 12697906 12698357 8.760000e-145 523.0
5 TraesCS4B01G031400 chr4D 94.135 341 16 2 2116 2453 12718003 12717664 1.470000e-142 516.0
6 TraesCS4B01G031400 chr4D 82.979 470 43 22 1239 1703 12738453 12738016 9.270000e-105 390.0
7 TraesCS4B01G031400 chr4D 89.377 273 14 3 2503 2762 12717666 12717396 2.050000e-86 329.0
8 TraesCS4B01G031400 chr4D 93.478 92 5 1 2032 2122 9296472 9296563 4.800000e-28 135.0
9 TraesCS4B01G031400 chr4A 90.058 1207 61 27 847 2018 589600215 589601397 0.000000e+00 1509.0
10 TraesCS4B01G031400 chr4A 91.285 459 28 6 1571 2018 589683445 589682988 1.410000e-172 616.0
11 TraesCS4B01G031400 chr4A 90.830 458 33 5 2114 2566 589601393 589601846 3.040000e-169 604.0
12 TraesCS4B01G031400 chr4A 90.769 455 33 5 2114 2563 589682992 589682542 1.420000e-167 599.0
13 TraesCS4B01G031400 chr4A 81.081 777 62 41 932 1703 589595673 589596369 2.420000e-150 542.0
14 TraesCS4B01G031400 chr4A 87.931 348 12 12 847 1174 589684421 589684084 1.550000e-102 383.0
15 TraesCS4B01G031400 chr4A 95.349 86 4 0 2030 2115 724801684 724801769 1.330000e-28 137.0
16 TraesCS4B01G031400 chr4A 83.333 156 10 7 1722 1862 589596440 589596594 2.230000e-26 130.0
17 TraesCS4B01G031400 chrUn 91.285 459 28 6 1571 2018 371047381 371047838 1.410000e-172 616.0
18 TraesCS4B01G031400 chrUn 90.929 452 32 5 2114 2560 371047834 371048281 1.420000e-167 599.0
19 TraesCS4B01G031400 chrUn 97.590 83 2 0 2032 2114 65676753 65676671 2.870000e-30 143.0
20 TraesCS4B01G031400 chr7A 97.647 85 2 0 2032 2116 2678105 2678021 2.220000e-31 147.0
21 TraesCS4B01G031400 chr7A 97.647 85 2 0 2030 2114 708368868 708368952 2.220000e-31 147.0
22 TraesCS4B01G031400 chr2D 94.624 93 3 2 2032 2123 465572959 465573050 2.870000e-30 143.0
23 TraesCS4B01G031400 chr3B 95.402 87 4 0 2032 2118 581135871 581135785 3.710000e-29 139.0
24 TraesCS4B01G031400 chr2B 94.382 89 5 0 2032 2120 142245590 142245678 1.330000e-28 137.0
25 TraesCS4B01G031400 chr2A 94.444 90 4 1 2032 2120 747680924 747681013 1.330000e-28 137.0
26 TraesCS4B01G031400 chr1D 89.041 73 8 0 1260 1332 363108578 363108650 1.050000e-14 91.6
27 TraesCS4B01G031400 chr1B 91.935 62 5 0 1271 1332 486346048 486346109 1.360000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G031400 chr4B 23416455 23419216 2761 True 5101.000000 5101 100.000000 1 2762 1 chr4B.!!$R1 2761
1 TraesCS4B01G031400 chr4B 23401362 23402513 1151 False 1389.000000 1389 88.629000 862 2030 1 chr4B.!!$F1 1168
2 TraesCS4B01G031400 chr4D 12696513 12698357 1844 False 1024.500000 1526 87.267500 641 2567 2 chr4D.!!$F2 1926
3 TraesCS4B01G031400 chr4D 12717396 12719426 2030 True 858.666667 1731 90.787667 589 2762 3 chr4D.!!$R2 2173
4 TraesCS4B01G031400 chr4A 589595673 589601846 6173 False 696.250000 1509 86.325500 847 2566 4 chr4A.!!$F2 1719
5 TraesCS4B01G031400 chr4A 589682542 589684421 1879 True 532.666667 616 89.995000 847 2563 3 chr4A.!!$R1 1716
6 TraesCS4B01G031400 chrUn 371047381 371048281 900 False 607.500000 616 91.107000 1571 2560 2 chrUn.!!$F1 989

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
264 265 0.035534 TACAAGCGCACCATGACCAT 60.036 50.0 11.47 0.00 0.00 3.55 F
806 810 0.242286 ATCCAATCCGAGCTCGATCG 59.758 55.0 36.59 20.31 43.02 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1676 5639 1.066858 TCTTCTTGGCCGTCATCAGTC 60.067 52.381 0.00 0.0 0.0 3.51 R
2715 6741 0.028902 GTGTCCGGGCATAAAATCGC 59.971 55.000 14.23 0.0 0.0 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.594788 AATTTCCACATCTACACATTTGCT 57.405 33.333 0.00 0.00 0.00 3.91
27 28 4.847198 TCCACATCTACACATTTGCTCAT 58.153 39.130 0.00 0.00 0.00 2.90
28 29 4.877823 TCCACATCTACACATTTGCTCATC 59.122 41.667 0.00 0.00 0.00 2.92
30 31 5.448225 CCACATCTACACATTTGCTCATCAC 60.448 44.000 0.00 0.00 0.00 3.06
31 32 4.637534 ACATCTACACATTTGCTCATCACC 59.362 41.667 0.00 0.00 0.00 4.02
32 33 4.558226 TCTACACATTTGCTCATCACCT 57.442 40.909 0.00 0.00 0.00 4.00
33 34 4.256110 TCTACACATTTGCTCATCACCTG 58.744 43.478 0.00 0.00 0.00 4.00
34 35 3.144657 ACACATTTGCTCATCACCTGA 57.855 42.857 0.00 0.00 0.00 3.86
35 36 3.489355 ACACATTTGCTCATCACCTGAA 58.511 40.909 0.00 0.00 32.14 3.02
36 37 3.504906 ACACATTTGCTCATCACCTGAAG 59.495 43.478 0.00 0.00 32.14 3.02
38 39 1.538047 TTTGCTCATCACCTGAAGCC 58.462 50.000 0.00 0.00 32.14 4.35
39 40 0.401356 TTGCTCATCACCTGAAGCCA 59.599 50.000 0.00 0.00 32.14 4.75
40 41 0.401356 TGCTCATCACCTGAAGCCAA 59.599 50.000 0.00 0.00 32.14 4.52
42 43 1.888512 GCTCATCACCTGAAGCCAAAA 59.111 47.619 0.00 0.00 32.14 2.44
43 44 2.297033 GCTCATCACCTGAAGCCAAAAA 59.703 45.455 0.00 0.00 32.14 1.94
62 63 3.328237 AAACAGTAGAAAAACGCGTGG 57.672 42.857 14.98 0.00 0.00 4.94
63 64 1.223187 ACAGTAGAAAAACGCGTGGG 58.777 50.000 14.98 0.00 0.00 4.61
82 83 4.651008 GTGTCGACCGGCGGACAA 62.651 66.667 35.78 9.63 41.33 3.18
83 84 4.651008 TGTCGACCGGCGGACAAC 62.651 66.667 35.78 23.46 41.33 3.32
84 85 4.353437 GTCGACCGGCGGACAACT 62.353 66.667 35.78 9.95 41.33 3.16
85 86 4.351938 TCGACCGGCGGACAACTG 62.352 66.667 35.78 13.87 41.33 3.16
90 91 3.726517 CGGCGGACAACTGGCAAG 61.727 66.667 0.00 0.00 46.42 4.01
91 92 2.594592 GGCGGACAACTGGCAAGT 60.595 61.111 0.00 0.00 45.57 3.16
93 94 1.733526 GCGGACAACTGGCAAGTTT 59.266 52.632 2.90 0.00 44.47 2.66
94 95 0.317854 GCGGACAACTGGCAAGTTTC 60.318 55.000 2.90 5.76 44.47 2.78
96 97 1.021968 GGACAACTGGCAAGTTTCGT 58.978 50.000 2.90 0.00 44.47 3.85
97 98 1.268539 GGACAACTGGCAAGTTTCGTG 60.269 52.381 2.90 0.00 44.47 4.35
98 99 0.100503 ACAACTGGCAAGTTTCGTGC 59.899 50.000 2.90 0.00 44.47 5.34
100 101 0.814457 AACTGGCAAGTTTCGTGCAA 59.186 45.000 0.00 0.00 44.47 4.08
101 102 0.814457 ACTGGCAAGTTTCGTGCAAA 59.186 45.000 9.43 0.00 44.07 3.68
102 103 1.199624 CTGGCAAGTTTCGTGCAAAC 58.800 50.000 9.43 0.00 44.07 2.93
111 112 3.671262 TCGTGCAAACGAAAGAGGA 57.329 47.368 0.00 0.00 39.34 3.71
112 113 1.942677 TCGTGCAAACGAAAGAGGAA 58.057 45.000 0.00 0.00 39.34 3.36
113 114 2.489971 TCGTGCAAACGAAAGAGGAAT 58.510 42.857 0.00 0.00 39.34 3.01
114 115 2.223144 TCGTGCAAACGAAAGAGGAATG 59.777 45.455 0.00 0.00 39.34 2.67
115 116 2.223144 CGTGCAAACGAAAGAGGAATGA 59.777 45.455 0.00 0.00 34.64 2.57
116 117 3.555518 GTGCAAACGAAAGAGGAATGAC 58.444 45.455 0.00 0.00 0.00 3.06
117 118 2.223144 TGCAAACGAAAGAGGAATGACG 59.777 45.455 0.00 0.00 0.00 4.35
119 120 2.094762 AACGAAAGAGGAATGACGGG 57.905 50.000 0.00 0.00 0.00 5.28
121 122 0.535335 CGAAAGAGGAATGACGGGGA 59.465 55.000 0.00 0.00 0.00 4.81
122 123 1.471676 CGAAAGAGGAATGACGGGGAG 60.472 57.143 0.00 0.00 0.00 4.30
125 126 3.447025 GAGGAATGACGGGGAGGCG 62.447 68.421 0.00 0.00 0.00 5.52
141 142 3.419759 CGCCCAAGCACGTACCAC 61.420 66.667 0.00 0.00 39.83 4.16
164 165 2.881441 TCGTGTTCGACAAGTGAGC 58.119 52.632 0.00 0.00 41.35 4.26
167 168 1.300620 TGTTCGACAAGTGAGCGGG 60.301 57.895 0.00 0.00 0.00 6.13
168 169 2.357034 TTCGACAAGTGAGCGGGC 60.357 61.111 0.00 0.00 0.00 6.13
172 173 1.739562 GACAAGTGAGCGGGCAGAG 60.740 63.158 0.00 0.00 0.00 3.35
173 174 2.159819 GACAAGTGAGCGGGCAGAGA 62.160 60.000 0.00 0.00 0.00 3.10
174 175 1.447489 CAAGTGAGCGGGCAGAGAG 60.447 63.158 0.00 0.00 0.00 3.20
176 177 3.071206 GTGAGCGGGCAGAGAGGA 61.071 66.667 0.00 0.00 0.00 3.71
177 178 2.042537 TGAGCGGGCAGAGAGGAT 60.043 61.111 0.00 0.00 0.00 3.24
178 179 2.420890 GAGCGGGCAGAGAGGATG 59.579 66.667 0.00 0.00 0.00 3.51
179 180 3.160047 AGCGGGCAGAGAGGATGG 61.160 66.667 0.00 0.00 0.00 3.51
181 182 4.598894 CGGGCAGAGAGGATGGCG 62.599 72.222 0.00 0.00 43.74 5.69
182 183 3.474570 GGGCAGAGAGGATGGCGT 61.475 66.667 0.00 0.00 43.74 5.68
183 184 2.134287 GGGCAGAGAGGATGGCGTA 61.134 63.158 0.00 0.00 43.74 4.42
184 185 1.365633 GGCAGAGAGGATGGCGTAG 59.634 63.158 0.00 0.00 33.23 3.51
218 219 3.118454 CCATCGCGGTGTGGTCAC 61.118 66.667 19.62 0.00 43.19 3.67
219 220 2.356913 CATCGCGGTGTGGTCACA 60.357 61.111 12.24 0.00 45.45 3.58
220 221 1.958715 CATCGCGGTGTGGTCACAA 60.959 57.895 12.24 0.00 45.45 3.33
221 222 1.959226 ATCGCGGTGTGGTCACAAC 60.959 57.895 6.13 8.94 45.45 3.32
222 223 3.645975 CGCGGTGTGGTCACAACC 61.646 66.667 12.83 11.51 45.88 3.77
223 224 3.284449 GCGGTGTGGTCACAACCC 61.284 66.667 12.83 7.04 45.88 4.11
224 225 2.508928 CGGTGTGGTCACAACCCT 59.491 61.111 12.83 0.00 45.88 4.34
225 226 1.891919 CGGTGTGGTCACAACCCTG 60.892 63.158 12.83 0.01 45.88 4.45
226 227 2.193536 GGTGTGGTCACAACCCTGC 61.194 63.158 7.86 0.00 45.83 4.85
227 228 2.203139 TGTGGTCACAACCCTGCG 60.203 61.111 0.78 0.00 45.83 5.18
228 229 3.660111 GTGGTCACAACCCTGCGC 61.660 66.667 0.00 0.00 45.83 6.09
230 231 4.980805 GGTCACAACCCTGCGCGA 62.981 66.667 12.10 0.00 39.93 5.87
231 232 2.742372 GTCACAACCCTGCGCGAT 60.742 61.111 12.10 0.00 0.00 4.58
232 233 2.434185 TCACAACCCTGCGCGATC 60.434 61.111 12.10 0.00 0.00 3.69
233 234 3.499737 CACAACCCTGCGCGATCC 61.500 66.667 12.10 0.00 0.00 3.36
245 246 3.108343 CGATCCGCCACTCGTACT 58.892 61.111 0.00 0.00 36.19 2.73
247 248 0.041488 CGATCCGCCACTCGTACTAC 60.041 60.000 0.00 0.00 36.19 2.73
248 249 1.019673 GATCCGCCACTCGTACTACA 58.980 55.000 0.00 0.00 36.19 2.74
250 251 0.806868 TCCGCCACTCGTACTACAAG 59.193 55.000 0.00 0.00 36.19 3.16
253 254 1.411493 GCCACTCGTACTACAAGCGC 61.411 60.000 0.00 0.00 0.00 5.92
254 255 0.109458 CCACTCGTACTACAAGCGCA 60.109 55.000 11.47 0.00 0.00 6.09
255 256 0.982673 CACTCGTACTACAAGCGCAC 59.017 55.000 11.47 0.00 0.00 5.34
258 259 0.528924 TCGTACTACAAGCGCACCAT 59.471 50.000 11.47 0.00 0.00 3.55
259 260 0.645355 CGTACTACAAGCGCACCATG 59.355 55.000 11.47 5.50 0.00 3.66
260 261 1.734377 CGTACTACAAGCGCACCATGA 60.734 52.381 11.47 0.00 0.00 3.07
262 263 0.673644 ACTACAAGCGCACCATGACC 60.674 55.000 11.47 0.00 0.00 4.02
263 264 0.673333 CTACAAGCGCACCATGACCA 60.673 55.000 11.47 0.00 0.00 4.02
264 265 0.035534 TACAAGCGCACCATGACCAT 60.036 50.000 11.47 0.00 0.00 3.55
265 266 1.138036 CAAGCGCACCATGACCATG 59.862 57.895 11.47 3.11 38.51 3.66
266 267 1.303561 AAGCGCACCATGACCATGT 60.304 52.632 11.47 0.00 37.11 3.21
267 268 1.308069 AAGCGCACCATGACCATGTC 61.308 55.000 11.47 0.00 37.11 3.06
268 269 2.764314 GCGCACCATGACCATGTCC 61.764 63.158 0.30 0.00 37.11 4.02
269 270 1.078214 CGCACCATGACCATGTCCT 60.078 57.895 8.93 0.00 37.11 3.85
270 271 1.371337 CGCACCATGACCATGTCCTG 61.371 60.000 8.93 3.19 37.11 3.86
299 300 3.382832 CGACAGCGGGTCCCTTCT 61.383 66.667 6.29 0.00 43.95 2.85
300 301 2.579738 GACAGCGGGTCCCTTCTC 59.420 66.667 6.29 0.00 40.83 2.87
301 302 1.985116 GACAGCGGGTCCCTTCTCT 60.985 63.158 6.29 0.00 40.83 3.10
302 303 1.536662 ACAGCGGGTCCCTTCTCTT 60.537 57.895 6.29 0.00 0.00 2.85
303 304 1.219393 CAGCGGGTCCCTTCTCTTC 59.781 63.158 6.29 0.00 0.00 2.87
304 305 2.184579 GCGGGTCCCTTCTCTTCG 59.815 66.667 6.29 0.00 0.00 3.79
306 307 2.585153 GGGTCCCTTCTCTTCGCC 59.415 66.667 0.00 0.00 0.00 5.54
307 308 2.184579 GGTCCCTTCTCTTCGCCG 59.815 66.667 0.00 0.00 0.00 6.46
309 310 4.129737 TCCCTTCTCTTCGCCGCG 62.130 66.667 6.39 6.39 0.00 6.46
328 329 4.856801 CCCCTTCCATGGCCGTCG 62.857 72.222 6.96 0.00 0.00 5.12
346 347 3.382832 CCGCCCGAGGAGACAAGT 61.383 66.667 0.00 0.00 0.00 3.16
347 348 2.125912 CGCCCGAGGAGACAAGTG 60.126 66.667 0.00 0.00 0.00 3.16
348 349 2.932234 CGCCCGAGGAGACAAGTGT 61.932 63.158 0.00 0.00 0.00 3.55
352 353 1.734477 CGAGGAGACAAGTGTGCCG 60.734 63.158 0.00 0.00 0.00 5.69
354 355 2.100879 GAGGAGACAAGTGTGCCGGT 62.101 60.000 1.90 0.00 0.00 5.28
355 356 1.961277 GGAGACAAGTGTGCCGGTG 60.961 63.158 1.90 0.00 0.00 4.94
357 358 2.203153 GACAAGTGTGCCGGTGGT 60.203 61.111 1.90 0.00 0.00 4.16
358 359 2.515991 ACAAGTGTGCCGGTGGTG 60.516 61.111 1.90 0.00 0.00 4.17
359 360 3.286751 CAAGTGTGCCGGTGGTGG 61.287 66.667 1.90 0.00 0.00 4.61
360 361 3.804329 AAGTGTGCCGGTGGTGGT 61.804 61.111 1.90 0.00 0.00 4.16
376 377 1.002087 GTGGTCCACACCTTTCGAGAT 59.998 52.381 17.59 0.00 44.49 2.75
377 378 1.001974 TGGTCCACACCTTTCGAGATG 59.998 52.381 0.00 0.00 44.17 2.90
378 379 1.079503 GTCCACACCTTTCGAGATGC 58.920 55.000 0.00 0.00 0.00 3.91
379 380 0.389817 TCCACACCTTTCGAGATGCG 60.390 55.000 0.00 0.00 42.69 4.73
380 381 1.361668 CCACACCTTTCGAGATGCGG 61.362 60.000 0.00 0.00 41.33 5.69
383 384 2.202743 CCTTTCGAGATGCGGCGA 60.203 61.111 12.98 0.00 41.33 5.54
385 386 2.202743 TTTCGAGATGCGGCGAGG 60.203 61.111 12.98 0.00 41.33 4.63
386 387 2.613739 CTTTCGAGATGCGGCGAGGA 62.614 60.000 12.98 0.00 41.33 3.71
387 388 2.613739 TTTCGAGATGCGGCGAGGAG 62.614 60.000 12.98 0.00 41.33 3.69
388 389 4.637489 CGAGATGCGGCGAGGAGG 62.637 72.222 12.98 0.00 36.03 4.30
389 390 3.219928 GAGATGCGGCGAGGAGGA 61.220 66.667 12.98 0.00 0.00 3.71
390 391 3.206211 GAGATGCGGCGAGGAGGAG 62.206 68.421 12.98 0.00 0.00 3.69
391 392 4.959596 GATGCGGCGAGGAGGAGC 62.960 72.222 12.98 0.00 0.00 4.70
433 434 2.262292 CCGGCAGGGCACAAAATG 59.738 61.111 0.00 0.00 0.00 2.32
444 445 2.083167 CACAAAATGCATGGTGTCCC 57.917 50.000 11.57 0.00 0.00 4.46
447 448 1.619827 CAAAATGCATGGTGTCCCAGT 59.380 47.619 0.00 0.00 46.15 4.00
448 449 2.824936 CAAAATGCATGGTGTCCCAGTA 59.175 45.455 0.00 0.00 46.15 2.74
450 451 1.289160 ATGCATGGTGTCCCAGTAGT 58.711 50.000 0.00 0.00 46.15 2.73
452 453 1.026718 GCATGGTGTCCCAGTAGTGC 61.027 60.000 0.00 0.00 46.15 4.40
453 454 0.740868 CATGGTGTCCCAGTAGTGCG 60.741 60.000 0.00 0.00 46.15 5.34
455 456 2.264794 GTGTCCCAGTAGTGCGGG 59.735 66.667 5.54 2.50 44.60 6.13
456 457 3.702048 TGTCCCAGTAGTGCGGGC 61.702 66.667 3.46 3.46 42.75 6.13
457 458 4.468689 GTCCCAGTAGTGCGGGCC 62.469 72.222 0.00 0.00 42.75 5.80
460 461 3.797353 CCAGTAGTGCGGGCCCAT 61.797 66.667 24.92 6.83 0.00 4.00
461 462 2.203070 CAGTAGTGCGGGCCCATC 60.203 66.667 24.92 13.74 0.00 3.51
463 464 2.513897 GTAGTGCGGGCCCATCAC 60.514 66.667 28.02 28.02 0.00 3.06
464 465 4.155733 TAGTGCGGGCCCATCACG 62.156 66.667 28.41 14.74 35.97 4.35
476 477 1.671166 CATCACGGGTCACCAGACA 59.329 57.895 0.00 0.00 46.80 3.41
477 478 0.670546 CATCACGGGTCACCAGACAC 60.671 60.000 0.00 0.00 46.80 3.67
478 479 0.832135 ATCACGGGTCACCAGACACT 60.832 55.000 0.00 0.00 46.23 3.55
480 481 1.152525 ACGGGTCACCAGACACTCT 60.153 57.895 0.00 0.00 46.23 3.24
482 483 0.896019 CGGGTCACCAGACACTCTCT 60.896 60.000 0.00 0.00 46.23 3.10
484 485 0.892063 GGTCACCAGACACTCTCTCC 59.108 60.000 0.00 0.00 46.80 3.71
486 487 0.780637 TCACCAGACACTCTCTCCCT 59.219 55.000 0.00 0.00 0.00 4.20
487 488 1.181786 CACCAGACACTCTCTCCCTC 58.818 60.000 0.00 0.00 0.00 4.30
488 489 0.780637 ACCAGACACTCTCTCCCTCA 59.219 55.000 0.00 0.00 0.00 3.86
489 490 1.181786 CCAGACACTCTCTCCCTCAC 58.818 60.000 0.00 0.00 0.00 3.51
490 491 1.272425 CCAGACACTCTCTCCCTCACT 60.272 57.143 0.00 0.00 0.00 3.41
492 493 1.992557 AGACACTCTCTCCCTCACTCT 59.007 52.381 0.00 0.00 0.00 3.24
493 494 2.026262 AGACACTCTCTCCCTCACTCTC 60.026 54.545 0.00 0.00 0.00 3.20
495 496 2.378547 ACACTCTCTCCCTCACTCTCTT 59.621 50.000 0.00 0.00 0.00 2.85
496 497 3.181423 ACACTCTCTCCCTCACTCTCTTT 60.181 47.826 0.00 0.00 0.00 2.52
497 498 3.193267 CACTCTCTCCCTCACTCTCTTTG 59.807 52.174 0.00 0.00 0.00 2.77
498 499 2.166254 CTCTCTCCCTCACTCTCTTTGC 59.834 54.545 0.00 0.00 0.00 3.68
499 500 2.178580 CTCTCCCTCACTCTCTTTGCT 58.821 52.381 0.00 0.00 0.00 3.91
500 501 2.166254 CTCTCCCTCACTCTCTTTGCTC 59.834 54.545 0.00 0.00 0.00 4.26
501 502 2.178580 CTCCCTCACTCTCTTTGCTCT 58.821 52.381 0.00 0.00 0.00 4.09
503 504 2.178580 CCCTCACTCTCTTTGCTCTCT 58.821 52.381 0.00 0.00 0.00 3.10
504 505 2.166254 CCCTCACTCTCTTTGCTCTCTC 59.834 54.545 0.00 0.00 0.00 3.20
505 506 3.091545 CCTCACTCTCTTTGCTCTCTCT 58.908 50.000 0.00 0.00 0.00 3.10
506 507 3.129287 CCTCACTCTCTTTGCTCTCTCTC 59.871 52.174 0.00 0.00 0.00 3.20
507 508 4.012374 CTCACTCTCTTTGCTCTCTCTCT 58.988 47.826 0.00 0.00 0.00 3.10
509 510 4.012374 CACTCTCTTTGCTCTCTCTCTCT 58.988 47.826 0.00 0.00 0.00 3.10
510 511 4.095483 CACTCTCTTTGCTCTCTCTCTCTC 59.905 50.000 0.00 0.00 0.00 3.20
512 513 4.517285 TCTCTTTGCTCTCTCTCTCTCTC 58.483 47.826 0.00 0.00 0.00 3.20
513 514 4.225942 TCTCTTTGCTCTCTCTCTCTCTCT 59.774 45.833 0.00 0.00 0.00 3.10
514 515 4.517285 TCTTTGCTCTCTCTCTCTCTCTC 58.483 47.826 0.00 0.00 0.00 3.20
515 516 3.998913 TTGCTCTCTCTCTCTCTCTCA 57.001 47.619 0.00 0.00 0.00 3.27
517 518 2.840038 TGCTCTCTCTCTCTCTCTCACT 59.160 50.000 0.00 0.00 0.00 3.41
518 519 3.118629 TGCTCTCTCTCTCTCTCTCACTC 60.119 52.174 0.00 0.00 0.00 3.51
519 520 3.133721 GCTCTCTCTCTCTCTCTCACTCT 59.866 52.174 0.00 0.00 0.00 3.24
520 521 4.739137 GCTCTCTCTCTCTCTCTCACTCTC 60.739 54.167 0.00 0.00 0.00 3.20
521 522 4.352893 TCTCTCTCTCTCTCTCACTCTCA 58.647 47.826 0.00 0.00 0.00 3.27
522 523 4.160439 TCTCTCTCTCTCTCTCACTCTCAC 59.840 50.000 0.00 0.00 0.00 3.51
524 525 4.160439 TCTCTCTCTCTCTCACTCTCACTC 59.840 50.000 0.00 0.00 0.00 3.51
525 526 4.096681 TCTCTCTCTCTCACTCTCACTCT 58.903 47.826 0.00 0.00 0.00 3.24
526 527 4.081476 TCTCTCTCTCTCACTCTCACTCTG 60.081 50.000 0.00 0.00 0.00 3.35
527 528 3.582647 TCTCTCTCTCACTCTCACTCTGT 59.417 47.826 0.00 0.00 0.00 3.41
528 529 3.673902 TCTCTCTCACTCTCACTCTGTG 58.326 50.000 0.00 0.00 34.45 3.66
529 530 3.072330 TCTCTCTCACTCTCACTCTGTGT 59.928 47.826 0.00 0.00 34.79 3.72
530 531 4.284746 TCTCTCTCACTCTCACTCTGTGTA 59.715 45.833 0.00 0.00 34.79 2.90
532 533 4.284746 TCTCTCACTCTCACTCTGTGTAGA 59.715 45.833 8.79 0.00 34.79 2.59
545 546 6.204075 CTCTGTGTAGAGTCAACGAAAAAG 57.796 41.667 0.00 0.00 44.43 2.27
546 547 5.047847 TCTGTGTAGAGTCAACGAAAAAGG 58.952 41.667 0.00 0.00 0.00 3.11
548 549 3.497262 GTGTAGAGTCAACGAAAAAGGGG 59.503 47.826 0.00 0.00 0.00 4.79
549 550 3.388676 TGTAGAGTCAACGAAAAAGGGGA 59.611 43.478 0.00 0.00 0.00 4.81
550 551 3.570912 AGAGTCAACGAAAAAGGGGAA 57.429 42.857 0.00 0.00 0.00 3.97
551 552 4.100279 AGAGTCAACGAAAAAGGGGAAT 57.900 40.909 0.00 0.00 0.00 3.01
552 553 3.821033 AGAGTCAACGAAAAAGGGGAATG 59.179 43.478 0.00 0.00 0.00 2.67
553 554 3.562182 AGTCAACGAAAAAGGGGAATGT 58.438 40.909 0.00 0.00 0.00 2.71
555 556 2.625790 TCAACGAAAAAGGGGAATGTGG 59.374 45.455 0.00 0.00 0.00 4.17
556 557 1.627864 ACGAAAAAGGGGAATGTGGG 58.372 50.000 0.00 0.00 0.00 4.61
558 559 1.549037 CGAAAAAGGGGAATGTGGGGA 60.549 52.381 0.00 0.00 0.00 4.81
559 560 1.899814 GAAAAAGGGGAATGTGGGGAC 59.100 52.381 0.00 0.00 0.00 4.46
560 561 0.251608 AAAAGGGGAATGTGGGGACG 60.252 55.000 0.00 0.00 0.00 4.79
563 564 2.598787 GGGGAATGTGGGGACGTGA 61.599 63.158 0.00 0.00 0.00 4.35
564 565 1.078426 GGGAATGTGGGGACGTGAG 60.078 63.158 0.00 0.00 0.00 3.51
575 576 4.338539 ACGTGAGTGGACGCGGAC 62.339 66.667 12.47 3.78 46.97 4.79
619 620 3.488047 CCAGCAGGCATGTAGATTTTTCG 60.488 47.826 0.00 0.00 0.00 3.46
621 622 2.682856 GCAGGCATGTAGATTTTTCGGA 59.317 45.455 0.00 0.00 0.00 4.55
623 624 4.790766 GCAGGCATGTAGATTTTTCGGATG 60.791 45.833 0.00 0.00 0.00 3.51
627 629 4.601019 CATGTAGATTTTTCGGATGTGGC 58.399 43.478 0.00 0.00 0.00 5.01
671 675 4.130857 TGTGTTTTCGACAATGGCTAAGA 58.869 39.130 0.00 0.00 40.65 2.10
680 684 3.450904 ACAATGGCTAAGAGGTAGGTCA 58.549 45.455 0.00 0.00 0.00 4.02
697 701 1.747355 GTCACTGGAGATGCCCAAATG 59.253 52.381 0.00 0.00 35.47 2.32
783 787 1.784525 ACAGAGCCGAAGTTTTCTCG 58.215 50.000 0.00 0.00 0.00 4.04
806 810 0.242286 ATCCAATCCGAGCTCGATCG 59.758 55.000 36.59 20.31 43.02 3.69
813 817 1.934956 CGAGCTCGATCGGTTGACG 60.935 63.158 32.06 11.11 43.02 4.35
823 827 4.397348 GGTTGACGAACAGCCCAT 57.603 55.556 8.42 0.00 42.79 4.00
824 828 2.171635 GGTTGACGAACAGCCCATC 58.828 57.895 8.42 0.00 42.79 3.51
825 829 0.605319 GGTTGACGAACAGCCCATCA 60.605 55.000 8.42 0.00 42.79 3.07
826 830 1.234821 GTTGACGAACAGCCCATCAA 58.765 50.000 0.00 0.00 31.78 2.57
827 831 1.606668 GTTGACGAACAGCCCATCAAA 59.393 47.619 0.00 0.00 31.45 2.69
828 832 1.974265 TGACGAACAGCCCATCAAAA 58.026 45.000 0.00 0.00 0.00 2.44
829 833 2.302260 TGACGAACAGCCCATCAAAAA 58.698 42.857 0.00 0.00 0.00 1.94
859 4556 0.963962 AGGCTTTGCATGGTCACTTG 59.036 50.000 0.00 0.00 0.00 3.16
1054 4769 3.386237 GCAGTGGCTCCGTCTCCT 61.386 66.667 0.00 0.00 36.96 3.69
1056 4771 2.363147 AGTGGCTCCGTCTCCTCC 60.363 66.667 0.00 0.00 0.00 4.30
1534 5258 3.580193 AGGACGTCGCCCGATACG 61.580 66.667 9.92 0.00 44.47 3.06
1546 5270 2.280186 GATACGGCCGCTTCCAGG 60.280 66.667 28.58 0.00 0.00 4.45
1676 5639 3.237741 GATCCGAGGAGGCCAGGG 61.238 72.222 5.01 0.00 40.77 4.45
1847 5842 5.048224 GCCATGTAGAGATGATTTCCAATGG 60.048 44.000 0.00 0.00 0.00 3.16
1947 5952 7.939588 AGATTAAGCTAGGAACATATTTGTCCC 59.060 37.037 0.00 0.00 34.06 4.46
1983 5988 9.549509 TTTGTTGATTCGTAATTGTATTACAGC 57.450 29.630 9.48 0.00 0.00 4.40
1996 6003 6.668541 TGTATTACAGCAAGAGCATTCTTC 57.331 37.500 0.00 0.00 41.71 2.87
2030 6037 6.756542 GGAGTACAAAGTTCACTTGCAAAATT 59.243 34.615 0.00 0.00 36.12 1.82
2031 6038 7.043391 GGAGTACAAAGTTCACTTGCAAAATTC 60.043 37.037 0.00 0.00 36.12 2.17
2032 6039 6.756542 AGTACAAAGTTCACTTGCAAAATTCC 59.243 34.615 0.00 0.00 36.12 3.01
2033 6040 5.733676 ACAAAGTTCACTTGCAAAATTCCT 58.266 33.333 0.00 0.00 36.12 3.36
2034 6041 5.812127 ACAAAGTTCACTTGCAAAATTCCTC 59.188 36.000 0.00 0.00 36.12 3.71
2035 6042 5.596836 AAGTTCACTTGCAAAATTCCTCA 57.403 34.783 0.00 0.00 34.38 3.86
2036 6043 5.192327 AGTTCACTTGCAAAATTCCTCAG 57.808 39.130 0.00 0.00 0.00 3.35
2037 6044 4.646492 AGTTCACTTGCAAAATTCCTCAGT 59.354 37.500 0.00 0.00 0.00 3.41
2038 6045 5.127682 AGTTCACTTGCAAAATTCCTCAGTT 59.872 36.000 0.00 0.00 0.00 3.16
2039 6046 5.186996 TCACTTGCAAAATTCCTCAGTTC 57.813 39.130 0.00 0.00 0.00 3.01
2040 6047 4.037923 TCACTTGCAAAATTCCTCAGTTCC 59.962 41.667 0.00 0.00 0.00 3.62
2041 6048 3.960102 ACTTGCAAAATTCCTCAGTTCCA 59.040 39.130 0.00 0.00 0.00 3.53
2042 6049 4.405358 ACTTGCAAAATTCCTCAGTTCCAA 59.595 37.500 0.00 0.00 0.00 3.53
2043 6050 5.104982 ACTTGCAAAATTCCTCAGTTCCAAA 60.105 36.000 0.00 0.00 0.00 3.28
2044 6051 5.350504 TGCAAAATTCCTCAGTTCCAAAA 57.649 34.783 0.00 0.00 0.00 2.44
2045 6052 5.927819 TGCAAAATTCCTCAGTTCCAAAAT 58.072 33.333 0.00 0.00 0.00 1.82
2046 6053 7.060383 TGCAAAATTCCTCAGTTCCAAAATA 57.940 32.000 0.00 0.00 0.00 1.40
2047 6054 7.153985 TGCAAAATTCCTCAGTTCCAAAATAG 58.846 34.615 0.00 0.00 0.00 1.73
2048 6055 7.015098 TGCAAAATTCCTCAGTTCCAAAATAGA 59.985 33.333 0.00 0.00 0.00 1.98
2049 6056 8.037166 GCAAAATTCCTCAGTTCCAAAATAGAT 58.963 33.333 0.00 0.00 0.00 1.98
2050 6057 9.362539 CAAAATTCCTCAGTTCCAAAATAGATG 57.637 33.333 0.00 0.00 0.00 2.90
2051 6058 8.884124 AAATTCCTCAGTTCCAAAATAGATGA 57.116 30.769 0.00 0.00 0.00 2.92
2052 6059 7.872113 ATTCCTCAGTTCCAAAATAGATGAC 57.128 36.000 0.00 0.00 0.00 3.06
2053 6060 6.627087 TCCTCAGTTCCAAAATAGATGACT 57.373 37.500 0.00 0.00 0.00 3.41
2054 6061 6.644347 TCCTCAGTTCCAAAATAGATGACTC 58.356 40.000 0.00 0.00 0.00 3.36
2055 6062 6.213397 TCCTCAGTTCCAAAATAGATGACTCA 59.787 38.462 0.00 0.00 0.00 3.41
2056 6063 6.881065 CCTCAGTTCCAAAATAGATGACTCAA 59.119 38.462 0.00 0.00 0.00 3.02
2057 6064 7.148340 CCTCAGTTCCAAAATAGATGACTCAAC 60.148 40.741 0.00 0.00 0.00 3.18
2058 6065 7.453393 TCAGTTCCAAAATAGATGACTCAACT 58.547 34.615 0.00 0.00 0.00 3.16
2059 6066 7.939039 TCAGTTCCAAAATAGATGACTCAACTT 59.061 33.333 0.00 0.00 0.00 2.66
2060 6067 8.571336 CAGTTCCAAAATAGATGACTCAACTTT 58.429 33.333 0.00 0.00 0.00 2.66
2061 6068 9.793259 AGTTCCAAAATAGATGACTCAACTTTA 57.207 29.630 0.00 0.00 0.00 1.85
2087 6094 9.716531 ATACTAACTTTAGTACAAAGTTGGGTC 57.283 33.333 28.62 0.00 46.38 4.46
2088 6095 7.567458 ACTAACTTTAGTACAAAGTTGGGTCA 58.433 34.615 28.62 17.50 46.38 4.02
2089 6096 8.215736 ACTAACTTTAGTACAAAGTTGGGTCAT 58.784 33.333 28.62 17.19 46.38 3.06
2090 6097 7.891498 AACTTTAGTACAAAGTTGGGTCATT 57.109 32.000 23.48 7.81 45.58 2.57
2091 6098 7.891498 ACTTTAGTACAAAGTTGGGTCATTT 57.109 32.000 14.04 0.00 37.18 2.32
2092 6099 8.983702 ACTTTAGTACAAAGTTGGGTCATTTA 57.016 30.769 14.04 0.00 37.18 1.40
2093 6100 9.582648 ACTTTAGTACAAAGTTGGGTCATTTAT 57.417 29.630 14.04 0.00 37.18 1.40
2098 6105 8.147704 AGTACAAAGTTGGGTCATTTATTTTGG 58.852 33.333 0.00 0.00 0.00 3.28
2099 6106 7.130681 ACAAAGTTGGGTCATTTATTTTGGA 57.869 32.000 0.00 0.00 0.00 3.53
2100 6107 7.569240 ACAAAGTTGGGTCATTTATTTTGGAA 58.431 30.769 0.00 0.00 0.00 3.53
2101 6108 8.217111 ACAAAGTTGGGTCATTTATTTTGGAAT 58.783 29.630 0.00 0.00 0.00 3.01
2102 6109 8.505625 CAAAGTTGGGTCATTTATTTTGGAATG 58.494 33.333 0.00 0.00 35.18 2.67
2103 6110 6.710278 AGTTGGGTCATTTATTTTGGAATGG 58.290 36.000 0.00 0.00 34.74 3.16
2104 6111 6.500049 AGTTGGGTCATTTATTTTGGAATGGA 59.500 34.615 0.00 0.00 34.74 3.41
2105 6112 6.543430 TGGGTCATTTATTTTGGAATGGAG 57.457 37.500 0.00 0.00 34.74 3.86
2106 6113 5.424895 TGGGTCATTTATTTTGGAATGGAGG 59.575 40.000 0.00 0.00 34.74 4.30
2107 6114 5.163311 GGGTCATTTATTTTGGAATGGAGGG 60.163 44.000 0.00 0.00 34.74 4.30
2108 6115 5.660864 GGTCATTTATTTTGGAATGGAGGGA 59.339 40.000 0.00 0.00 34.74 4.20
2109 6116 6.183360 GGTCATTTATTTTGGAATGGAGGGAG 60.183 42.308 0.00 0.00 34.74 4.30
2112 6119 8.288812 TCATTTATTTTGGAATGGAGGGAGTAT 58.711 33.333 0.00 0.00 34.74 2.12
2120 6127 6.659824 TGGAATGGAGGGAGTATAAGTTTTC 58.340 40.000 0.00 0.00 0.00 2.29
2178 6185 1.523258 CTGCCTCATTGCTCCTCGG 60.523 63.158 0.00 0.00 0.00 4.63
2191 6198 3.449377 TGCTCCTCGGTGATTACATGTTA 59.551 43.478 2.30 0.00 0.00 2.41
2262 6269 9.171701 CGTCGATTAAAACCTCTAGAAGATAAG 57.828 37.037 0.00 0.00 0.00 1.73
2332 6339 5.738118 ATTGAAATGTTGGCAGTTGTTTG 57.262 34.783 0.00 0.00 32.65 2.93
2344 6352 3.254657 GCAGTTGTTTGCCACCATAAGTA 59.745 43.478 0.00 0.00 38.13 2.24
2438 6451 7.412063 TGCATCATTCTATCGTTTTCATTGAG 58.588 34.615 0.00 0.00 0.00 3.02
2448 6461 4.935205 TCGTTTTCATTGAGTTCCATCGAT 59.065 37.500 0.00 0.00 0.00 3.59
2523 6536 9.546428 AAGAAACTGAATTATCAAAAACAAGGG 57.454 29.630 0.00 0.00 34.49 3.95
2587 6601 2.230660 GGCCCCTTTGGAGATTAATCG 58.769 52.381 9.78 0.00 35.39 3.34
2590 6604 1.264288 CCCTTTGGAGATTAATCGCGC 59.736 52.381 12.30 0.00 0.00 6.86
2591 6605 2.213499 CCTTTGGAGATTAATCGCGCT 58.787 47.619 12.30 0.00 0.00 5.92
2617 6631 7.981789 TCTCTATTGGTATGTGATTGTTCAGAC 59.018 37.037 0.00 0.00 30.85 3.51
2680 6706 1.405105 GCGAGGCCAAATTCTTGCATA 59.595 47.619 5.01 0.00 39.53 3.14
2684 6710 4.260784 CGAGGCCAAATTCTTGCATACTAC 60.261 45.833 5.01 0.00 0.00 2.73
2690 6716 7.488150 GGCCAAATTCTTGCATACTACTTTTAC 59.512 37.037 0.00 0.00 0.00 2.01
2691 6717 8.244113 GCCAAATTCTTGCATACTACTTTTACT 58.756 33.333 0.00 0.00 0.00 2.24
2706 6732 6.737254 ACTTTTACTGTAAATGGATCACCG 57.263 37.500 22.39 5.79 39.42 4.94
2715 6741 1.016627 ATGGATCACCGAATGCAACG 58.983 50.000 9.21 9.21 39.42 4.10
2717 6743 1.296867 GATCACCGAATGCAACGCG 60.297 57.895 3.53 3.53 0.00 6.01
2729 6755 1.199852 GCAACGCGATTTTATGCCCG 61.200 55.000 15.93 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.209192 TGAGCAAATGTGTAGATGTGGAAATT 59.791 34.615 0.00 0.00 0.00 1.82
2 3 5.711506 TGAGCAAATGTGTAGATGTGGAAAT 59.288 36.000 0.00 0.00 0.00 2.17
3 4 5.069318 TGAGCAAATGTGTAGATGTGGAAA 58.931 37.500 0.00 0.00 0.00 3.13
4 5 4.650734 TGAGCAAATGTGTAGATGTGGAA 58.349 39.130 0.00 0.00 0.00 3.53
5 6 4.284829 TGAGCAAATGTGTAGATGTGGA 57.715 40.909 0.00 0.00 0.00 4.02
6 7 4.637091 TGATGAGCAAATGTGTAGATGTGG 59.363 41.667 0.00 0.00 0.00 4.17
8 9 4.637534 GGTGATGAGCAAATGTGTAGATGT 59.362 41.667 0.00 0.00 0.00 3.06
11 12 4.020307 TCAGGTGATGAGCAAATGTGTAGA 60.020 41.667 0.00 0.00 32.77 2.59
14 15 3.144657 TCAGGTGATGAGCAAATGTGT 57.855 42.857 0.00 0.00 32.77 3.72
16 17 2.490903 GCTTCAGGTGATGAGCAAATGT 59.509 45.455 0.00 0.00 39.68 2.71
18 19 2.097825 GGCTTCAGGTGATGAGCAAAT 58.902 47.619 6.11 0.00 39.68 2.32
19 20 1.202915 TGGCTTCAGGTGATGAGCAAA 60.203 47.619 6.11 0.00 39.68 3.68
20 21 0.401356 TGGCTTCAGGTGATGAGCAA 59.599 50.000 6.11 0.00 39.68 3.91
22 23 1.538047 TTTGGCTTCAGGTGATGAGC 58.462 50.000 0.00 0.00 39.68 4.26
40 41 4.099824 CCACGCGTTTTTCTACTGTTTTT 58.900 39.130 10.22 0.00 0.00 1.94
42 43 2.032426 CCCACGCGTTTTTCTACTGTTT 59.968 45.455 10.22 0.00 0.00 2.83
43 44 1.600485 CCCACGCGTTTTTCTACTGTT 59.400 47.619 10.22 0.00 0.00 3.16
44 45 1.223187 CCCACGCGTTTTTCTACTGT 58.777 50.000 10.22 0.00 0.00 3.55
45 46 0.110373 GCCCACGCGTTTTTCTACTG 60.110 55.000 10.22 0.00 0.00 2.74
46 47 2.241171 GCCCACGCGTTTTTCTACT 58.759 52.632 10.22 0.00 0.00 2.57
47 48 4.832767 GCCCACGCGTTTTTCTAC 57.167 55.556 10.22 0.00 0.00 2.59
65 66 4.651008 TTGTCCGCCGGTCGACAC 62.651 66.667 20.98 15.48 41.67 3.67
68 69 4.351938 CAGTTGTCCGCCGGTCGA 62.352 66.667 17.96 4.25 41.67 4.20
73 74 3.726517 CTTGCCAGTTGTCCGCCG 61.727 66.667 0.00 0.00 0.00 6.46
74 75 1.734388 AAACTTGCCAGTTGTCCGCC 61.734 55.000 3.60 0.00 42.89 6.13
75 76 0.317854 GAAACTTGCCAGTTGTCCGC 60.318 55.000 3.60 0.00 42.89 5.54
76 77 0.041312 CGAAACTTGCCAGTTGTCCG 60.041 55.000 3.60 5.18 42.89 4.79
78 79 1.859998 GCACGAAACTTGCCAGTTGTC 60.860 52.381 3.60 3.88 42.89 3.18
80 81 0.100325 TGCACGAAACTTGCCAGTTG 59.900 50.000 3.60 0.00 42.89 3.16
81 82 0.814457 TTGCACGAAACTTGCCAGTT 59.186 45.000 0.00 0.00 45.89 3.16
82 83 0.814457 TTTGCACGAAACTTGCCAGT 59.186 45.000 0.00 0.00 39.39 4.00
83 84 1.199624 GTTTGCACGAAACTTGCCAG 58.800 50.000 0.00 0.00 40.84 4.85
84 85 3.337398 GTTTGCACGAAACTTGCCA 57.663 47.368 0.00 0.00 40.84 4.92
96 97 2.223144 CGTCATTCCTCTTTCGTTTGCA 59.777 45.455 0.00 0.00 0.00 4.08
97 98 2.412847 CCGTCATTCCTCTTTCGTTTGC 60.413 50.000 0.00 0.00 0.00 3.68
98 99 2.159627 CCCGTCATTCCTCTTTCGTTTG 59.840 50.000 0.00 0.00 0.00 2.93
100 101 1.338769 CCCCGTCATTCCTCTTTCGTT 60.339 52.381 0.00 0.00 0.00 3.85
101 102 0.249398 CCCCGTCATTCCTCTTTCGT 59.751 55.000 0.00 0.00 0.00 3.85
102 103 0.535335 TCCCCGTCATTCCTCTTTCG 59.465 55.000 0.00 0.00 0.00 3.46
104 105 0.912486 CCTCCCCGTCATTCCTCTTT 59.088 55.000 0.00 0.00 0.00 2.52
105 106 1.627297 GCCTCCCCGTCATTCCTCTT 61.627 60.000 0.00 0.00 0.00 2.85
106 107 2.066999 GCCTCCCCGTCATTCCTCT 61.067 63.158 0.00 0.00 0.00 3.69
107 108 2.506472 GCCTCCCCGTCATTCCTC 59.494 66.667 0.00 0.00 0.00 3.71
108 109 3.470888 CGCCTCCCCGTCATTCCT 61.471 66.667 0.00 0.00 0.00 3.36
125 126 3.419759 CGTGGTACGTGCTTGGGC 61.420 66.667 3.01 0.00 36.74 5.36
126 127 2.740826 CCGTGGTACGTGCTTGGG 60.741 66.667 3.01 0.00 40.58 4.12
128 129 1.554042 GACACCGTGGTACGTGCTTG 61.554 60.000 3.01 0.00 40.58 4.01
129 130 1.300388 GACACCGTGGTACGTGCTT 60.300 57.895 3.01 0.00 40.58 3.91
130 131 2.337532 GACACCGTGGTACGTGCT 59.662 61.111 3.01 0.00 40.58 4.40
131 132 3.101428 CGACACCGTGGTACGTGC 61.101 66.667 0.00 0.00 40.58 5.34
146 147 0.933047 CGCTCACTTGTCGAACACGA 60.933 55.000 0.00 0.00 0.00 4.35
147 148 1.482955 CGCTCACTTGTCGAACACG 59.517 57.895 0.00 0.00 0.00 4.49
148 149 1.557443 CCCGCTCACTTGTCGAACAC 61.557 60.000 0.00 0.00 0.00 3.32
149 150 1.300620 CCCGCTCACTTGTCGAACA 60.301 57.895 0.00 0.00 0.00 3.18
152 153 3.573772 CTGCCCGCTCACTTGTCGA 62.574 63.158 0.00 0.00 0.00 4.20
153 154 3.114616 CTGCCCGCTCACTTGTCG 61.115 66.667 0.00 0.00 0.00 4.35
155 156 2.164865 CTCTCTGCCCGCTCACTTGT 62.165 60.000 0.00 0.00 0.00 3.16
156 157 1.447489 CTCTCTGCCCGCTCACTTG 60.447 63.158 0.00 0.00 0.00 3.16
158 159 2.870035 ATCCTCTCTGCCCGCTCACT 62.870 60.000 0.00 0.00 0.00 3.41
160 161 2.042537 ATCCTCTCTGCCCGCTCA 60.043 61.111 0.00 0.00 0.00 4.26
161 162 2.420890 CATCCTCTCTGCCCGCTC 59.579 66.667 0.00 0.00 0.00 5.03
162 163 3.160047 CCATCCTCTCTGCCCGCT 61.160 66.667 0.00 0.00 0.00 5.52
164 165 4.598894 CGCCATCCTCTCTGCCCG 62.599 72.222 0.00 0.00 0.00 6.13
167 168 1.300542 GCTACGCCATCCTCTCTGC 60.301 63.158 0.00 0.00 0.00 4.26
168 169 0.031857 CAGCTACGCCATCCTCTCTG 59.968 60.000 0.00 0.00 0.00 3.35
172 173 0.249657 CCTTCAGCTACGCCATCCTC 60.250 60.000 0.00 0.00 0.00 3.71
173 174 1.826024 CCTTCAGCTACGCCATCCT 59.174 57.895 0.00 0.00 0.00 3.24
174 175 1.889573 GCCTTCAGCTACGCCATCC 60.890 63.158 0.00 0.00 38.99 3.51
176 177 2.202932 CGCCTTCAGCTACGCCAT 60.203 61.111 0.00 0.00 40.39 4.40
177 178 4.451150 CCGCCTTCAGCTACGCCA 62.451 66.667 0.00 0.00 40.39 5.69
178 179 4.143333 TCCGCCTTCAGCTACGCC 62.143 66.667 0.00 0.00 40.39 5.68
179 180 2.583593 CTCCGCCTTCAGCTACGC 60.584 66.667 0.00 0.00 40.39 4.42
181 182 2.202946 GCCTCCGCCTTCAGCTAC 60.203 66.667 0.00 0.00 40.39 3.58
182 183 3.838271 CGCCTCCGCCTTCAGCTA 61.838 66.667 0.00 0.00 40.39 3.32
201 202 3.118454 GTGACCACACCGCGATGG 61.118 66.667 18.75 18.75 46.41 3.51
203 204 1.959226 GTTGTGACCACACCGCGAT 60.959 57.895 8.23 0.00 45.40 4.58
205 206 3.645975 GGTTGTGACCACACCGCG 61.646 66.667 0.00 0.00 45.77 6.46
213 214 4.980805 TCGCGCAGGGTTGTGACC 62.981 66.667 8.75 0.00 45.75 4.02
214 215 2.740714 GATCGCGCAGGGTTGTGAC 61.741 63.158 8.75 0.00 42.82 3.67
215 216 2.434185 GATCGCGCAGGGTTGTGA 60.434 61.111 8.75 0.00 42.82 3.58
216 217 3.499737 GGATCGCGCAGGGTTGTG 61.500 66.667 8.75 0.00 42.82 3.33
228 229 0.041488 GTAGTACGAGTGGCGGATCG 60.041 60.000 0.00 4.55 46.49 3.69
230 231 1.404391 CTTGTAGTACGAGTGGCGGAT 59.596 52.381 9.16 0.00 46.49 4.18
231 232 0.806868 CTTGTAGTACGAGTGGCGGA 59.193 55.000 9.16 0.00 46.49 5.54
232 233 0.801067 GCTTGTAGTACGAGTGGCGG 60.801 60.000 17.23 0.00 46.49 6.13
234 235 1.411493 GCGCTTGTAGTACGAGTGGC 61.411 60.000 25.65 20.38 39.82 5.01
235 236 0.109458 TGCGCTTGTAGTACGAGTGG 60.109 55.000 25.65 16.00 39.82 4.00
236 237 0.982673 GTGCGCTTGTAGTACGAGTG 59.017 55.000 22.05 22.05 41.80 3.51
237 238 0.109412 GGTGCGCTTGTAGTACGAGT 60.109 55.000 17.23 0.00 32.12 4.18
240 241 0.645355 CATGGTGCGCTTGTAGTACG 59.355 55.000 9.73 0.00 0.00 3.67
242 243 1.404986 GGTCATGGTGCGCTTGTAGTA 60.405 52.381 9.73 0.00 0.00 1.82
243 244 0.673644 GGTCATGGTGCGCTTGTAGT 60.674 55.000 9.73 0.00 0.00 2.73
244 245 0.673333 TGGTCATGGTGCGCTTGTAG 60.673 55.000 9.73 0.00 0.00 2.74
245 246 0.035534 ATGGTCATGGTGCGCTTGTA 60.036 50.000 9.73 0.00 0.00 2.41
247 248 1.138036 CATGGTCATGGTGCGCTTG 59.862 57.895 9.73 1.11 35.24 4.01
248 249 1.303561 ACATGGTCATGGTGCGCTT 60.304 52.632 9.73 0.00 42.91 4.68
250 251 2.764314 GGACATGGTCATGGTGCGC 61.764 63.158 14.49 0.00 42.91 6.09
282 283 3.358076 GAGAAGGGACCCGCTGTCG 62.358 68.421 12.99 0.00 45.46 4.35
283 284 1.545706 AAGAGAAGGGACCCGCTGTC 61.546 60.000 12.99 8.84 43.67 3.51
284 285 1.536662 AAGAGAAGGGACCCGCTGT 60.537 57.895 12.99 6.94 0.00 4.40
285 286 1.219393 GAAGAGAAGGGACCCGCTG 59.781 63.158 12.99 0.00 0.00 5.18
288 289 2.184579 GCGAAGAGAAGGGACCCG 59.815 66.667 4.40 0.00 0.00 5.28
289 290 2.585153 GGCGAAGAGAAGGGACCC 59.415 66.667 0.59 0.59 0.00 4.46
290 291 2.184579 CGGCGAAGAGAAGGGACC 59.815 66.667 0.00 0.00 0.00 4.46
328 329 4.821589 CTTGTCTCCTCGGGCGGC 62.822 72.222 0.00 0.00 0.00 6.53
330 331 2.125912 CACTTGTCTCCTCGGGCG 60.126 66.667 0.00 0.00 0.00 6.13
331 332 1.374758 CACACTTGTCTCCTCGGGC 60.375 63.158 0.00 0.00 0.00 6.13
332 333 1.374758 GCACACTTGTCTCCTCGGG 60.375 63.158 0.00 0.00 0.00 5.14
334 335 1.734477 CGGCACACTTGTCTCCTCG 60.734 63.158 0.00 0.00 0.00 4.63
335 336 1.374758 CCGGCACACTTGTCTCCTC 60.375 63.158 0.00 0.00 0.00 3.71
336 337 2.140792 ACCGGCACACTTGTCTCCT 61.141 57.895 0.00 0.00 0.00 3.69
337 338 1.961277 CACCGGCACACTTGTCTCC 60.961 63.158 0.00 0.00 0.00 3.71
338 339 1.961277 CCACCGGCACACTTGTCTC 60.961 63.158 0.00 0.00 0.00 3.36
339 340 2.111043 CCACCGGCACACTTGTCT 59.889 61.111 0.00 0.00 0.00 3.41
340 341 2.203153 ACCACCGGCACACTTGTC 60.203 61.111 0.00 0.00 0.00 3.18
341 342 2.515991 CACCACCGGCACACTTGT 60.516 61.111 0.00 0.00 0.00 3.16
344 345 4.250305 GACCACCACCGGCACACT 62.250 66.667 0.00 0.00 0.00 3.55
357 358 1.001974 CATCTCGAAAGGTGTGGACCA 59.998 52.381 0.00 0.00 45.98 4.02
358 359 1.726853 CATCTCGAAAGGTGTGGACC 58.273 55.000 0.00 0.00 43.52 4.46
359 360 1.079503 GCATCTCGAAAGGTGTGGAC 58.920 55.000 0.00 0.00 35.92 4.02
360 361 0.389817 CGCATCTCGAAAGGTGTGGA 60.390 55.000 0.00 0.00 39.92 4.02
362 363 1.970917 GCCGCATCTCGAAAGGTGTG 61.971 60.000 0.00 0.00 42.66 3.82
363 364 1.741770 GCCGCATCTCGAAAGGTGT 60.742 57.895 0.00 0.00 41.67 4.16
364 365 2.802667 CGCCGCATCTCGAAAGGTG 61.803 63.158 0.00 0.00 41.67 4.00
365 366 2.509336 CGCCGCATCTCGAAAGGT 60.509 61.111 0.00 0.00 41.67 3.50
368 369 2.202743 CCTCGCCGCATCTCGAAA 60.203 61.111 0.00 0.00 41.67 3.46
370 371 3.586961 CTCCTCGCCGCATCTCGA 61.587 66.667 0.00 0.00 41.67 4.04
371 372 4.637489 CCTCCTCGCCGCATCTCG 62.637 72.222 0.00 0.00 38.08 4.04
373 374 3.222855 CTCCTCCTCGCCGCATCT 61.223 66.667 0.00 0.00 0.00 2.90
416 417 2.262292 CATTTTGTGCCCTGCCGG 59.738 61.111 0.00 0.00 0.00 6.13
425 426 1.343789 TGGGACACCATGCATTTTGTG 59.656 47.619 13.51 14.67 43.37 3.33
426 427 1.714541 TGGGACACCATGCATTTTGT 58.285 45.000 9.28 9.28 43.37 2.83
436 437 2.579657 CCGCACTACTGGGACACCA 61.580 63.158 0.00 0.00 46.94 4.17
437 438 2.264794 CCGCACTACTGGGACACC 59.735 66.667 0.00 0.00 31.89 4.16
443 444 3.757248 GATGGGCCCGCACTACTGG 62.757 68.421 19.37 0.00 0.00 4.00
444 445 2.203070 GATGGGCCCGCACTACTG 60.203 66.667 19.37 0.00 0.00 2.74
445 446 2.687200 TGATGGGCCCGCACTACT 60.687 61.111 19.37 0.00 0.00 2.57
447 448 4.155733 CGTGATGGGCCCGCACTA 62.156 66.667 32.46 12.98 0.00 2.74
457 458 1.079127 GTCTGGTGACCCGTGATGG 60.079 63.158 0.00 0.00 37.24 3.51
458 459 0.670546 GTGTCTGGTGACCCGTGATG 60.671 60.000 0.00 0.00 42.28 3.07
459 460 0.832135 AGTGTCTGGTGACCCGTGAT 60.832 55.000 0.00 0.00 42.28 3.06
460 461 1.456892 AGTGTCTGGTGACCCGTGA 60.457 57.895 0.00 0.00 42.28 4.35
461 462 1.006102 GAGTGTCTGGTGACCCGTG 60.006 63.158 0.00 0.00 42.28 4.94
463 464 0.896019 AGAGAGTGTCTGGTGACCCG 60.896 60.000 0.00 0.00 42.28 5.28
464 465 0.892063 GAGAGAGTGTCTGGTGACCC 59.108 60.000 0.00 0.00 42.28 4.46
466 467 0.892063 GGGAGAGAGTGTCTGGTGAC 59.108 60.000 0.00 0.00 43.20 3.67
467 468 0.780637 AGGGAGAGAGTGTCTGGTGA 59.219 55.000 0.00 0.00 34.71 4.02
469 470 0.780637 TGAGGGAGAGAGTGTCTGGT 59.219 55.000 0.00 0.00 34.71 4.00
470 471 1.181786 GTGAGGGAGAGAGTGTCTGG 58.818 60.000 0.00 0.00 34.71 3.86
471 472 2.091541 GAGTGAGGGAGAGAGTGTCTG 58.908 57.143 0.00 0.00 34.71 3.51
472 473 1.992557 AGAGTGAGGGAGAGAGTGTCT 59.007 52.381 0.00 0.00 38.71 3.41
473 474 2.026262 AGAGAGTGAGGGAGAGAGTGTC 60.026 54.545 0.00 0.00 0.00 3.67
476 477 3.430453 CAAAGAGAGTGAGGGAGAGAGT 58.570 50.000 0.00 0.00 0.00 3.24
477 478 2.166254 GCAAAGAGAGTGAGGGAGAGAG 59.834 54.545 0.00 0.00 0.00 3.20
478 479 2.175202 GCAAAGAGAGTGAGGGAGAGA 58.825 52.381 0.00 0.00 0.00 3.10
480 481 2.175202 GAGCAAAGAGAGTGAGGGAGA 58.825 52.381 0.00 0.00 0.00 3.71
482 483 2.175202 GAGAGCAAAGAGAGTGAGGGA 58.825 52.381 0.00 0.00 0.00 4.20
484 485 3.091545 AGAGAGAGCAAAGAGAGTGAGG 58.908 50.000 0.00 0.00 0.00 3.86
486 487 4.009675 GAGAGAGAGAGCAAAGAGAGTGA 58.990 47.826 0.00 0.00 0.00 3.41
487 488 4.012374 AGAGAGAGAGAGCAAAGAGAGTG 58.988 47.826 0.00 0.00 0.00 3.51
488 489 4.018960 AGAGAGAGAGAGAGCAAAGAGAGT 60.019 45.833 0.00 0.00 0.00 3.24
489 490 4.521146 AGAGAGAGAGAGAGCAAAGAGAG 58.479 47.826 0.00 0.00 0.00 3.20
490 491 4.225942 AGAGAGAGAGAGAGAGCAAAGAGA 59.774 45.833 0.00 0.00 0.00 3.10
492 493 4.019411 TGAGAGAGAGAGAGAGAGCAAAGA 60.019 45.833 0.00 0.00 0.00 2.52
493 494 4.095483 GTGAGAGAGAGAGAGAGAGCAAAG 59.905 50.000 0.00 0.00 0.00 2.77
495 496 3.264193 AGTGAGAGAGAGAGAGAGAGCAA 59.736 47.826 0.00 0.00 0.00 3.91
496 497 2.840038 AGTGAGAGAGAGAGAGAGAGCA 59.160 50.000 0.00 0.00 0.00 4.26
497 498 3.133721 AGAGTGAGAGAGAGAGAGAGAGC 59.866 52.174 0.00 0.00 0.00 4.09
498 499 4.403752 TGAGAGTGAGAGAGAGAGAGAGAG 59.596 50.000 0.00 0.00 0.00 3.20
499 500 4.160439 GTGAGAGTGAGAGAGAGAGAGAGA 59.840 50.000 0.00 0.00 0.00 3.10
500 501 4.161189 AGTGAGAGTGAGAGAGAGAGAGAG 59.839 50.000 0.00 0.00 0.00 3.20
501 502 4.096681 AGTGAGAGTGAGAGAGAGAGAGA 58.903 47.826 0.00 0.00 0.00 3.10
503 504 4.081476 CAGAGTGAGAGTGAGAGAGAGAGA 60.081 50.000 0.00 0.00 0.00 3.10
504 505 4.186926 CAGAGTGAGAGTGAGAGAGAGAG 58.813 52.174 0.00 0.00 0.00 3.20
505 506 3.582647 ACAGAGTGAGAGTGAGAGAGAGA 59.417 47.826 0.00 0.00 0.00 3.10
506 507 3.686241 CACAGAGTGAGAGTGAGAGAGAG 59.314 52.174 0.00 0.00 35.23 3.20
507 508 3.072330 ACACAGAGTGAGAGTGAGAGAGA 59.928 47.826 3.88 0.00 36.96 3.10
509 510 3.500448 ACACAGAGTGAGAGTGAGAGA 57.500 47.619 3.88 0.00 36.96 3.10
510 511 4.574892 TCTACACAGAGTGAGAGTGAGAG 58.425 47.826 3.88 0.00 36.96 3.20
512 513 4.944962 CTCTACACAGAGTGAGAGTGAG 57.055 50.000 3.88 1.06 42.99 3.51
524 525 4.211374 CCCTTTTTCGTTGACTCTACACAG 59.789 45.833 0.00 0.00 0.00 3.66
525 526 4.124238 CCCTTTTTCGTTGACTCTACACA 58.876 43.478 0.00 0.00 0.00 3.72
526 527 3.497262 CCCCTTTTTCGTTGACTCTACAC 59.503 47.826 0.00 0.00 0.00 2.90
527 528 3.388676 TCCCCTTTTTCGTTGACTCTACA 59.611 43.478 0.00 0.00 0.00 2.74
528 529 3.999046 TCCCCTTTTTCGTTGACTCTAC 58.001 45.455 0.00 0.00 0.00 2.59
529 530 4.693042 TTCCCCTTTTTCGTTGACTCTA 57.307 40.909 0.00 0.00 0.00 2.43
530 531 3.570912 TTCCCCTTTTTCGTTGACTCT 57.429 42.857 0.00 0.00 0.00 3.24
532 533 3.317993 CACATTCCCCTTTTTCGTTGACT 59.682 43.478 0.00 0.00 0.00 3.41
534 535 2.625790 CCACATTCCCCTTTTTCGTTGA 59.374 45.455 0.00 0.00 0.00 3.18
535 536 2.288763 CCCACATTCCCCTTTTTCGTTG 60.289 50.000 0.00 0.00 0.00 4.10
536 537 1.967779 CCCACATTCCCCTTTTTCGTT 59.032 47.619 0.00 0.00 0.00 3.85
537 538 1.627864 CCCACATTCCCCTTTTTCGT 58.372 50.000 0.00 0.00 0.00 3.85
538 539 0.894835 CCCCACATTCCCCTTTTTCG 59.105 55.000 0.00 0.00 0.00 3.46
539 540 1.899814 GTCCCCACATTCCCCTTTTTC 59.100 52.381 0.00 0.00 0.00 2.29
540 541 1.825641 CGTCCCCACATTCCCCTTTTT 60.826 52.381 0.00 0.00 0.00 1.94
541 542 0.251608 CGTCCCCACATTCCCCTTTT 60.252 55.000 0.00 0.00 0.00 2.27
542 543 1.382629 CGTCCCCACATTCCCCTTT 59.617 57.895 0.00 0.00 0.00 3.11
543 544 1.850755 ACGTCCCCACATTCCCCTT 60.851 57.895 0.00 0.00 0.00 3.95
544 545 2.204090 ACGTCCCCACATTCCCCT 60.204 61.111 0.00 0.00 0.00 4.79
545 546 2.045340 CACGTCCCCACATTCCCC 60.045 66.667 0.00 0.00 0.00 4.81
546 547 1.078426 CTCACGTCCCCACATTCCC 60.078 63.158 0.00 0.00 0.00 3.97
548 549 0.673644 CCACTCACGTCCCCACATTC 60.674 60.000 0.00 0.00 0.00 2.67
549 550 1.125093 TCCACTCACGTCCCCACATT 61.125 55.000 0.00 0.00 0.00 2.71
550 551 1.535444 TCCACTCACGTCCCCACAT 60.535 57.895 0.00 0.00 0.00 3.21
551 552 2.123208 TCCACTCACGTCCCCACA 60.123 61.111 0.00 0.00 0.00 4.17
552 553 2.342648 GTCCACTCACGTCCCCAC 59.657 66.667 0.00 0.00 0.00 4.61
553 554 3.299977 CGTCCACTCACGTCCCCA 61.300 66.667 0.00 0.00 34.95 4.96
558 559 4.338539 GTCCGCGTCCACTCACGT 62.339 66.667 4.92 0.00 42.04 4.49
591 592 1.836999 TACATGCCTGCTGGGAACGT 61.837 55.000 8.15 10.89 37.19 3.99
599 600 2.684881 CCGAAAAATCTACATGCCTGCT 59.315 45.455 0.00 0.00 0.00 4.24
603 604 4.498009 CCACATCCGAAAAATCTACATGCC 60.498 45.833 0.00 0.00 0.00 4.40
604 605 4.601019 CCACATCCGAAAAATCTACATGC 58.399 43.478 0.00 0.00 0.00 4.06
606 607 3.632145 GGCCACATCCGAAAAATCTACAT 59.368 43.478 0.00 0.00 0.00 2.29
619 620 1.097547 CAGTCCGATTGGCCACATCC 61.098 60.000 3.88 0.12 34.14 3.51
621 622 1.750399 GCAGTCCGATTGGCCACAT 60.750 57.895 3.88 1.82 34.14 3.21
623 624 1.244019 AAAGCAGTCCGATTGGCCAC 61.244 55.000 3.88 0.00 34.14 5.01
627 629 2.099141 TCTCAAAGCAGTCCGATTGG 57.901 50.000 0.00 0.00 0.00 3.16
671 675 1.490574 GCATCTCCAGTGACCTACCT 58.509 55.000 0.00 0.00 0.00 3.08
680 684 1.637553 AGTCATTTGGGCATCTCCAGT 59.362 47.619 0.00 0.00 38.17 4.00
758 762 5.063880 AGAAAACTTCGGCTCTGTAATGTT 58.936 37.500 0.00 0.00 34.02 2.71
783 787 0.601311 CGAGCTCGGATTGGATTCCC 60.601 60.000 28.40 0.00 35.37 3.97
806 810 0.605319 TGATGGGCTGTTCGTCAACC 60.605 55.000 0.00 0.00 0.00 3.77
813 817 1.669795 CGCCTTTTTGATGGGCTGTTC 60.670 52.381 0.00 0.00 43.29 3.18
814 818 0.318120 CGCCTTTTTGATGGGCTGTT 59.682 50.000 0.00 0.00 43.29 3.16
818 822 1.540435 TTCCCGCCTTTTTGATGGGC 61.540 55.000 0.00 0.00 39.82 5.36
820 824 0.532115 CCTTCCCGCCTTTTTGATGG 59.468 55.000 0.00 0.00 0.00 3.51
822 826 1.616994 CCTCCTTCCCGCCTTTTTGAT 60.617 52.381 0.00 0.00 0.00 2.57
823 827 0.251165 CCTCCTTCCCGCCTTTTTGA 60.251 55.000 0.00 0.00 0.00 2.69
824 828 1.877576 GCCTCCTTCCCGCCTTTTTG 61.878 60.000 0.00 0.00 0.00 2.44
825 829 1.606601 GCCTCCTTCCCGCCTTTTT 60.607 57.895 0.00 0.00 0.00 1.94
826 830 2.035783 GCCTCCTTCCCGCCTTTT 59.964 61.111 0.00 0.00 0.00 2.27
827 831 2.081585 AAAGCCTCCTTCCCGCCTTT 62.082 55.000 0.00 0.00 0.00 3.11
828 832 2.539081 AAAGCCTCCTTCCCGCCTT 61.539 57.895 0.00 0.00 0.00 4.35
829 833 2.936032 AAAGCCTCCTTCCCGCCT 60.936 61.111 0.00 0.00 0.00 5.52
859 4556 0.877071 TGAGTACGGTTCCGACTCAC 59.123 55.000 26.14 16.01 39.31 3.51
1272 4993 2.733593 GTGACGGACACGAGCACC 60.734 66.667 0.00 0.00 44.60 5.01
1355 5076 1.087501 GAAGAACACCCGGAAGATGC 58.912 55.000 0.73 0.00 0.00 3.91
1473 5197 3.922640 GAGGGCGCTGGAGCTAGG 61.923 72.222 8.56 0.00 39.32 3.02
1528 5252 2.658593 CTGGAAGCGGCCGTATCG 60.659 66.667 28.70 9.61 0.00 2.92
1534 5258 4.785453 CTGGACCTGGAAGCGGCC 62.785 72.222 0.00 0.00 33.39 6.13
1585 5548 3.814268 GACGGGCGCGTACTGGTA 61.814 66.667 29.59 0.00 0.00 3.25
1667 5630 1.524482 GTCATCAGTCCCTGGCCTC 59.476 63.158 3.32 0.00 31.51 4.70
1676 5639 1.066858 TCTTCTTGGCCGTCATCAGTC 60.067 52.381 0.00 0.00 0.00 3.51
1847 5842 7.335422 ACAAATAACTGAGGACATGAGACATTC 59.665 37.037 0.00 0.00 0.00 2.67
1983 5988 1.201965 GCGAACCGAAGAATGCTCTTG 60.202 52.381 0.00 0.00 42.19 3.02
1996 6003 1.068474 CTTTGTACTCCAGCGAACCG 58.932 55.000 0.00 0.00 0.00 4.44
2030 6037 6.213397 TGAGTCATCTATTTTGGAACTGAGGA 59.787 38.462 0.00 0.00 0.00 3.71
2031 6038 6.409704 TGAGTCATCTATTTTGGAACTGAGG 58.590 40.000 0.00 0.00 0.00 3.86
2032 6039 7.605691 AGTTGAGTCATCTATTTTGGAACTGAG 59.394 37.037 1.70 0.00 0.00 3.35
2033 6040 7.453393 AGTTGAGTCATCTATTTTGGAACTGA 58.547 34.615 1.70 0.00 0.00 3.41
2034 6041 7.678947 AGTTGAGTCATCTATTTTGGAACTG 57.321 36.000 1.70 0.00 0.00 3.16
2035 6042 8.697507 AAAGTTGAGTCATCTATTTTGGAACT 57.302 30.769 4.14 0.00 0.00 3.01
2061 6068 9.716531 GACCCAACTTTGTACTAAAGTTAGTAT 57.283 33.333 23.56 15.20 45.57 2.12
2062 6069 8.703743 TGACCCAACTTTGTACTAAAGTTAGTA 58.296 33.333 23.56 6.81 45.57 1.82
2063 6070 7.567458 TGACCCAACTTTGTACTAAAGTTAGT 58.433 34.615 23.56 22.58 45.57 2.24
2064 6071 8.617290 ATGACCCAACTTTGTACTAAAGTTAG 57.383 34.615 23.56 20.79 45.57 2.34
2065 6072 8.983702 AATGACCCAACTTTGTACTAAAGTTA 57.016 30.769 23.56 14.79 45.57 2.24
2067 6074 7.891498 AAATGACCCAACTTTGTACTAAAGT 57.109 32.000 14.04 14.04 41.82 2.66
2072 6079 8.147704 CCAAAATAAATGACCCAACTTTGTACT 58.852 33.333 0.00 0.00 0.00 2.73
2073 6080 8.145122 TCCAAAATAAATGACCCAACTTTGTAC 58.855 33.333 0.00 0.00 0.00 2.90
2074 6081 8.251383 TCCAAAATAAATGACCCAACTTTGTA 57.749 30.769 0.00 0.00 0.00 2.41
2075 6082 7.130681 TCCAAAATAAATGACCCAACTTTGT 57.869 32.000 0.00 0.00 0.00 2.83
2076 6083 8.505625 CATTCCAAAATAAATGACCCAACTTTG 58.494 33.333 0.00 0.00 35.35 2.77
2077 6084 7.665145 CCATTCCAAAATAAATGACCCAACTTT 59.335 33.333 0.00 0.00 35.35 2.66
2078 6085 7.017056 TCCATTCCAAAATAAATGACCCAACTT 59.983 33.333 0.00 0.00 35.35 2.66
2079 6086 6.500049 TCCATTCCAAAATAAATGACCCAACT 59.500 34.615 0.00 0.00 35.35 3.16
2080 6087 6.706295 TCCATTCCAAAATAAATGACCCAAC 58.294 36.000 0.00 0.00 35.35 3.77
2081 6088 6.070309 CCTCCATTCCAAAATAAATGACCCAA 60.070 38.462 0.00 0.00 35.35 4.12
2082 6089 5.424895 CCTCCATTCCAAAATAAATGACCCA 59.575 40.000 0.00 0.00 35.35 4.51
2083 6090 5.163311 CCCTCCATTCCAAAATAAATGACCC 60.163 44.000 0.00 0.00 35.35 4.46
2084 6091 5.660864 TCCCTCCATTCCAAAATAAATGACC 59.339 40.000 0.00 0.00 35.35 4.02
2085 6092 6.381133 ACTCCCTCCATTCCAAAATAAATGAC 59.619 38.462 0.00 0.00 35.35 3.06
2086 6093 6.502138 ACTCCCTCCATTCCAAAATAAATGA 58.498 36.000 0.00 0.00 35.35 2.57
2087 6094 6.796785 ACTCCCTCCATTCCAAAATAAATG 57.203 37.500 0.00 0.00 33.57 2.32
2089 6096 9.640952 CTTATACTCCCTCCATTCCAAAATAAA 57.359 33.333 0.00 0.00 0.00 1.40
2090 6097 8.787818 ACTTATACTCCCTCCATTCCAAAATAA 58.212 33.333 0.00 0.00 0.00 1.40
2091 6098 8.344939 ACTTATACTCCCTCCATTCCAAAATA 57.655 34.615 0.00 0.00 0.00 1.40
2092 6099 7.226059 ACTTATACTCCCTCCATTCCAAAAT 57.774 36.000 0.00 0.00 0.00 1.82
2093 6100 6.652205 ACTTATACTCCCTCCATTCCAAAA 57.348 37.500 0.00 0.00 0.00 2.44
2094 6101 6.652205 AACTTATACTCCCTCCATTCCAAA 57.348 37.500 0.00 0.00 0.00 3.28
2095 6102 6.652205 AAACTTATACTCCCTCCATTCCAA 57.348 37.500 0.00 0.00 0.00 3.53
2096 6103 6.447084 AGAAAACTTATACTCCCTCCATTCCA 59.553 38.462 0.00 0.00 0.00 3.53
2097 6104 6.901300 AGAAAACTTATACTCCCTCCATTCC 58.099 40.000 0.00 0.00 0.00 3.01
2098 6105 8.809468 AAAGAAAACTTATACTCCCTCCATTC 57.191 34.615 0.00 0.00 0.00 2.67
2099 6106 9.601810 AAAAAGAAAACTTATACTCCCTCCATT 57.398 29.630 0.00 0.00 0.00 3.16
2178 6185 7.521509 AGCGTAGTTCTTAACATGTAATCAC 57.478 36.000 0.00 0.00 0.00 3.06
2191 6198 9.570488 CTTCTACTATTTTGTAGCGTAGTTCTT 57.430 33.333 0.00 0.00 39.61 2.52
2231 6238 4.261578 AGAGGTTTTAATCGACGTTCCA 57.738 40.909 0.00 0.00 0.00 3.53
2332 6339 9.120538 TGAAGATCTTAAAATACTTATGGTGGC 57.879 33.333 8.25 0.00 0.00 5.01
2344 6352 9.844257 AAGAATCCGATCTGAAGATCTTAAAAT 57.156 29.630 8.25 1.83 46.58 1.82
2363 6374 1.244019 ACGGTGGCTTGCAAGAATCC 61.244 55.000 30.39 22.95 0.00 3.01
2438 6451 3.252974 ACTTGGAGTCATCGATGGAAC 57.747 47.619 24.61 16.26 0.00 3.62
2448 6461 6.419484 TCTTGAGTGATTAACTTGGAGTCA 57.581 37.500 0.00 0.00 40.07 3.41
2523 6536 6.013689 GTGCTTGTAGTATTTCGTAAACTGC 58.986 40.000 0.00 0.00 0.00 4.40
2587 6601 3.371102 TCACATACCAATAGAGAGCGC 57.629 47.619 0.00 0.00 0.00 5.92
2590 6604 8.200120 TCTGAACAATCACATACCAATAGAGAG 58.800 37.037 0.00 0.00 0.00 3.20
2591 6605 7.981789 GTCTGAACAATCACATACCAATAGAGA 59.018 37.037 0.00 0.00 0.00 3.10
2647 6661 1.292223 CCTCGCTTTCAGGTTCCGA 59.708 57.895 0.00 0.00 0.00 4.55
2680 6706 7.548075 CGGTGATCCATTTACAGTAAAAGTAGT 59.452 37.037 9.84 0.00 0.00 2.73
2684 6710 6.978343 TCGGTGATCCATTTACAGTAAAAG 57.022 37.500 9.84 5.63 0.00 2.27
2690 6716 3.627123 TGCATTCGGTGATCCATTTACAG 59.373 43.478 0.00 0.00 0.00 2.74
2691 6717 3.615155 TGCATTCGGTGATCCATTTACA 58.385 40.909 0.00 0.00 0.00 2.41
2706 6732 2.216263 GGCATAAAATCGCGTTGCATTC 59.784 45.455 5.77 0.00 35.04 2.67
2715 6741 0.028902 GTGTCCGGGCATAAAATCGC 59.971 55.000 14.23 0.00 0.00 4.58
2717 6743 2.052782 AGGTGTCCGGGCATAAAATC 57.947 50.000 14.23 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.