Multiple sequence alignment - TraesCS4B01G031300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G031300 chr4B 100.000 5761 0 0 1 5761 23409188 23403428 0.000000e+00 10639.0
1 TraesCS4B01G031300 chr4B 81.494 589 95 13 2850 3431 23406096 23405515 6.760000e-129 472.0
2 TraesCS4B01G031300 chr4B 81.494 589 95 13 3093 3674 23406339 23405758 6.760000e-129 472.0
3 TraesCS4B01G031300 chr4D 95.030 4930 167 26 540 5413 12704374 12699467 0.000000e+00 7675.0
4 TraesCS4B01G031300 chr4D 81.834 589 93 13 2850 3431 12701787 12701206 3.120000e-132 483.0
5 TraesCS4B01G031300 chr4D 81.741 586 99 8 3093 3674 12702030 12701449 3.120000e-132 483.0
6 TraesCS4B01G031300 chr4D 99.578 237 1 0 5525 5761 12699086 12698850 3.190000e-117 433.0
7 TraesCS4B01G031300 chr4A 92.799 5041 252 48 620 5602 589607394 589602407 0.000000e+00 7195.0
8 TraesCS4B01G031300 chr4A 82.253 586 96 8 3093 3674 589605122 589604541 3.100000e-137 499.0
9 TraesCS4B01G031300 chr4A 81.293 588 98 11 2850 3431 589604879 589604298 3.140000e-127 466.0
10 TraesCS4B01G031300 chr4A 96.970 33 1 0 4030 4062 589596379 589596411 8.060000e-04 56.5
11 TraesCS4B01G031300 chr1A 88.556 367 33 5 4704 5068 510299573 510299214 2.460000e-118 436.0
12 TraesCS4B01G031300 chr1A 80.702 114 22 0 4 117 434868753 434868866 7.950000e-14 89.8
13 TraesCS4B01G031300 chr2B 86.098 410 47 6 4704 5110 697436416 697436014 3.190000e-117 433.0
14 TraesCS4B01G031300 chr1B 86.131 411 46 7 4704 5110 130938294 130937891 3.190000e-117 433.0
15 TraesCS4B01G031300 chr1B 86.098 410 47 6 4704 5110 223852881 223852479 3.190000e-117 433.0
16 TraesCS4B01G031300 chr1B 84.536 97 13 2 294 389 487945851 487945756 1.710000e-15 95.3
17 TraesCS4B01G031300 chr1D 89.941 338 27 3 4705 5041 51927282 51927613 4.120000e-116 429.0
18 TraesCS4B01G031300 chr6D 88.011 367 35 5 4704 5068 436500010 436499651 5.340000e-115 425.0
19 TraesCS4B01G031300 chr3D 88.011 367 34 6 4704 5068 301345898 301345540 5.340000e-115 425.0
20 TraesCS4B01G031300 chr5A 79.812 213 38 4 279 488 687654747 687654537 3.600000e-32 150.0
21 TraesCS4B01G031300 chr5A 88.393 112 9 2 4 115 44337734 44337841 1.300000e-26 132.0
22 TraesCS4B01G031300 chr7B 79.545 220 36 9 270 487 724262611 724262823 1.290000e-31 148.0
23 TraesCS4B01G031300 chr7B 88.406 69 8 0 330 398 7096790 7096858 3.700000e-12 84.2
24 TraesCS4B01G031300 chrUn 80.311 193 36 2 294 486 68809948 68810138 1.670000e-30 145.0
25 TraesCS4B01G031300 chr2D 79.474 190 36 3 294 482 19560626 19560439 1.300000e-26 132.0
26 TraesCS4B01G031300 chr2D 78.061 196 38 5 294 487 53464386 53464578 1.010000e-22 119.0
27 TraesCS4B01G031300 chr2A 84.404 109 17 0 7 115 723831825 723831717 2.200000e-19 108.0
28 TraesCS4B01G031300 chr6A 76.821 151 34 1 336 486 562758629 562758778 3.700000e-12 84.2
29 TraesCS4B01G031300 chr5B 84.884 86 7 6 336 418 518826537 518826619 1.330000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G031300 chr4B 23403428 23409188 5760 True 3861.0 10639 87.662667 1 5761 3 chr4B.!!$R1 5760
1 TraesCS4B01G031300 chr4D 12698850 12704374 5524 True 2268.5 7675 89.545750 540 5761 4 chr4D.!!$R1 5221
2 TraesCS4B01G031300 chr4A 589602407 589607394 4987 True 2720.0 7195 85.448333 620 5602 3 chr4A.!!$R1 4982

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
447 448 0.029834 CAGAGCTGCGCAAAACTTGT 59.970 50.0 13.05 0.0 0.00 3.16 F
507 508 0.097674 CTGCCGCCGATGAAAAGAAG 59.902 55.0 0.00 0.0 0.00 2.85 F
632 633 0.243636 GGGGTGTGAAAATTCGGCAG 59.756 55.0 0.00 0.0 0.00 4.85 F
852 861 0.256752 TCCCAGATCCGTTCCGACTA 59.743 55.0 0.00 0.0 0.00 2.59 F
2501 2562 0.379669 AACTGAATATGCAGCAGCGC 59.620 50.0 10.93 0.0 46.23 5.92 F
3621 3682 0.039708 GCAAGCACTGGAGAGTTTGC 60.040 55.0 9.20 9.2 42.70 3.68 F
3622 3683 0.236711 CAAGCACTGGAGAGTTTGCG 59.763 55.0 0.00 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2375 2436 0.038709 GGAGCTCCAGTGCGCTATAG 60.039 60.000 28.43 1.17 36.45 1.31 R
2420 2481 3.003897 CCTCTACAGCAAGACGGACTATC 59.996 52.174 0.00 0.00 0.00 2.08 R
2562 2623 1.284198 AGCTTGGGACTGAGCAATGAT 59.716 47.619 0.00 0.00 39.83 2.45 R
2674 2735 0.600557 TTTGTATGCCCCAAGTTGCG 59.399 50.000 0.00 0.00 0.00 4.85 R
4488 4549 3.067106 TCCTTTCTTGAACAGCGACATC 58.933 45.455 0.00 0.00 0.00 3.06 R
4684 4745 1.153289 CTGGTCAGGGGCGAATGAG 60.153 63.158 0.00 0.00 0.00 2.90 R
4765 4826 2.368548 ACACAATCTGACTGCACCTACA 59.631 45.455 0.00 0.00 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.656651 CGCTCTCGGAATCTGCGG 60.657 66.667 0.00 0.00 42.46 5.69
22 23 2.808315 GCTCTCGGAATCTGCGGA 59.192 61.111 0.00 0.00 0.00 5.54
23 24 1.299773 GCTCTCGGAATCTGCGGAG 60.300 63.158 0.00 0.00 36.79 4.63
37 38 3.220447 CGGAGCGGGAAAACTACAA 57.780 52.632 0.00 0.00 0.00 2.41
38 39 0.794473 CGGAGCGGGAAAACTACAAC 59.206 55.000 0.00 0.00 0.00 3.32
39 40 1.607251 CGGAGCGGGAAAACTACAACT 60.607 52.381 0.00 0.00 0.00 3.16
40 41 2.074576 GGAGCGGGAAAACTACAACTC 58.925 52.381 0.00 0.00 0.00 3.01
41 42 2.074576 GAGCGGGAAAACTACAACTCC 58.925 52.381 0.00 0.00 0.00 3.85
42 43 1.697982 AGCGGGAAAACTACAACTCCT 59.302 47.619 0.00 0.00 0.00 3.69
43 44 2.105993 AGCGGGAAAACTACAACTCCTT 59.894 45.455 0.00 0.00 0.00 3.36
44 45 2.483106 GCGGGAAAACTACAACTCCTTC 59.517 50.000 0.00 0.00 0.00 3.46
45 46 2.735134 CGGGAAAACTACAACTCCTTCG 59.265 50.000 0.00 0.00 0.00 3.79
46 47 3.736720 GGGAAAACTACAACTCCTTCGT 58.263 45.455 0.00 0.00 0.00 3.85
47 48 4.132336 GGGAAAACTACAACTCCTTCGTT 58.868 43.478 0.00 0.00 0.00 3.85
48 49 4.577693 GGGAAAACTACAACTCCTTCGTTT 59.422 41.667 0.00 0.00 0.00 3.60
49 50 5.066893 GGGAAAACTACAACTCCTTCGTTTT 59.933 40.000 0.00 0.00 37.30 2.43
50 51 6.260714 GGGAAAACTACAACTCCTTCGTTTTA 59.739 38.462 0.00 0.00 35.47 1.52
51 52 7.201723 GGGAAAACTACAACTCCTTCGTTTTAA 60.202 37.037 0.00 0.00 35.47 1.52
52 53 8.183536 GGAAAACTACAACTCCTTCGTTTTAAA 58.816 33.333 0.00 0.00 35.47 1.52
53 54 8.900511 AAAACTACAACTCCTTCGTTTTAAAC 57.099 30.769 0.00 0.00 34.11 2.01
54 55 7.854557 AACTACAACTCCTTCGTTTTAAACT 57.145 32.000 6.27 0.00 0.00 2.66
55 56 7.242914 ACTACAACTCCTTCGTTTTAAACTG 57.757 36.000 6.27 0.47 0.00 3.16
56 57 4.916870 ACAACTCCTTCGTTTTAAACTGC 58.083 39.130 6.27 0.00 0.00 4.40
57 58 4.396790 ACAACTCCTTCGTTTTAAACTGCA 59.603 37.500 6.27 0.00 0.00 4.41
58 59 4.813296 ACTCCTTCGTTTTAAACTGCAG 57.187 40.909 13.48 13.48 0.00 4.41
59 60 3.564225 ACTCCTTCGTTTTAAACTGCAGG 59.436 43.478 19.93 8.62 0.00 4.85
60 61 3.547746 TCCTTCGTTTTAAACTGCAGGT 58.452 40.909 19.93 9.19 0.00 4.00
61 62 3.562557 TCCTTCGTTTTAAACTGCAGGTC 59.437 43.478 19.93 0.00 0.00 3.85
62 63 3.304458 CCTTCGTTTTAAACTGCAGGTCC 60.304 47.826 19.93 0.00 0.00 4.46
63 64 1.868498 TCGTTTTAAACTGCAGGTCCG 59.132 47.619 19.93 9.75 0.00 4.79
64 65 1.662026 CGTTTTAAACTGCAGGTCCGC 60.662 52.381 19.93 0.23 0.00 5.54
65 66 0.955905 TTTTAAACTGCAGGTCCGCC 59.044 50.000 19.93 0.00 0.00 6.13
66 67 0.179015 TTTAAACTGCAGGTCCGCCA 60.179 50.000 19.93 0.00 37.19 5.69
67 68 0.179015 TTAAACTGCAGGTCCGCCAA 60.179 50.000 19.93 0.00 37.19 4.52
68 69 0.887387 TAAACTGCAGGTCCGCCAAC 60.887 55.000 19.93 0.00 37.19 3.77
69 70 2.624674 AAACTGCAGGTCCGCCAACT 62.625 55.000 19.93 0.00 37.19 3.16
70 71 2.743928 CTGCAGGTCCGCCAACTC 60.744 66.667 5.57 0.00 37.19 3.01
71 72 4.329545 TGCAGGTCCGCCAACTCC 62.330 66.667 3.72 0.00 37.19 3.85
80 81 3.706373 GCCAACTCCGCTCCCAGA 61.706 66.667 0.00 0.00 0.00 3.86
81 82 2.581354 CCAACTCCGCTCCCAGAG 59.419 66.667 0.00 0.00 36.16 3.35
82 83 2.286523 CCAACTCCGCTCCCAGAGT 61.287 63.158 0.00 0.00 45.18 3.24
83 84 4.217112 AACTCCGCTCCCAGAGTT 57.783 55.556 0.00 0.00 46.05 3.01
84 85 3.382111 ACTCCGCTCCCAGAGTTG 58.618 61.111 0.00 0.00 40.43 3.16
85 86 1.534235 ACTCCGCTCCCAGAGTTGT 60.534 57.895 0.00 0.00 40.43 3.32
86 87 1.079543 CTCCGCTCCCAGAGTTGTG 60.080 63.158 0.00 0.00 31.39 3.33
87 88 2.046892 CCGCTCCCAGAGTTGTGG 60.047 66.667 0.00 0.00 37.34 4.17
88 89 2.583441 CCGCTCCCAGAGTTGTGGA 61.583 63.158 0.00 0.00 40.44 4.02
89 90 1.079543 CGCTCCCAGAGTTGTGGAG 60.080 63.158 0.00 0.00 40.44 3.86
91 92 2.061220 CTCCCAGAGTTGTGGAGCA 58.939 57.895 0.00 0.00 40.44 4.26
92 93 0.036577 CTCCCAGAGTTGTGGAGCAG 60.037 60.000 0.00 0.00 40.44 4.24
93 94 0.471780 TCCCAGAGTTGTGGAGCAGA 60.472 55.000 0.00 0.00 40.44 4.26
94 95 0.036577 CCCAGAGTTGTGGAGCAGAG 60.037 60.000 0.00 0.00 40.44 3.35
95 96 0.683973 CCAGAGTTGTGGAGCAGAGT 59.316 55.000 0.00 0.00 40.44 3.24
96 97 1.607509 CCAGAGTTGTGGAGCAGAGTG 60.608 57.143 0.00 0.00 40.44 3.51
97 98 0.683973 AGAGTTGTGGAGCAGAGTGG 59.316 55.000 0.00 0.00 0.00 4.00
98 99 0.394565 GAGTTGTGGAGCAGAGTGGT 59.605 55.000 0.00 0.00 0.00 4.16
99 100 1.618837 GAGTTGTGGAGCAGAGTGGTA 59.381 52.381 0.00 0.00 0.00 3.25
100 101 1.344763 AGTTGTGGAGCAGAGTGGTAC 59.655 52.381 0.00 0.00 0.00 3.34
101 102 0.685097 TTGTGGAGCAGAGTGGTACC 59.315 55.000 4.43 4.43 0.00 3.34
102 103 1.215647 GTGGAGCAGAGTGGTACCG 59.784 63.158 7.57 0.00 0.00 4.02
103 104 1.076014 TGGAGCAGAGTGGTACCGA 59.924 57.895 7.57 0.00 0.00 4.69
104 105 0.541063 TGGAGCAGAGTGGTACCGAA 60.541 55.000 7.57 0.00 0.00 4.30
105 106 0.108756 GGAGCAGAGTGGTACCGAAC 60.109 60.000 7.57 0.17 0.00 3.95
106 107 0.601558 GAGCAGAGTGGTACCGAACA 59.398 55.000 7.57 0.00 0.00 3.18
107 108 0.603569 AGCAGAGTGGTACCGAACAG 59.396 55.000 7.57 0.00 0.00 3.16
109 110 0.246635 CAGAGTGGTACCGAACAGGG 59.753 60.000 7.57 0.00 46.96 4.45
110 111 1.079336 GAGTGGTACCGAACAGGGC 60.079 63.158 7.57 0.00 46.96 5.19
111 112 2.046604 GTGGTACCGAACAGGGCC 60.047 66.667 7.57 0.00 46.96 5.80
112 113 2.203877 TGGTACCGAACAGGGCCT 60.204 61.111 7.57 0.00 46.96 5.19
113 114 1.844289 TGGTACCGAACAGGGCCTT 60.844 57.895 1.32 0.00 46.96 4.35
114 115 0.544833 TGGTACCGAACAGGGCCTTA 60.545 55.000 1.32 0.00 46.96 2.69
115 116 0.614812 GGTACCGAACAGGGCCTTAA 59.385 55.000 1.32 0.00 46.96 1.85
116 117 1.211212 GGTACCGAACAGGGCCTTAAT 59.789 52.381 1.32 0.00 46.96 1.40
117 118 2.435437 GGTACCGAACAGGGCCTTAATA 59.565 50.000 1.32 0.00 46.96 0.98
118 119 3.072038 GGTACCGAACAGGGCCTTAATAT 59.928 47.826 1.32 0.00 46.96 1.28
119 120 3.487120 ACCGAACAGGGCCTTAATATC 57.513 47.619 1.32 0.00 46.96 1.63
120 121 3.046374 ACCGAACAGGGCCTTAATATCT 58.954 45.455 1.32 0.00 46.96 1.98
121 122 3.071167 ACCGAACAGGGCCTTAATATCTC 59.929 47.826 1.32 0.00 46.96 2.75
122 123 3.325135 CCGAACAGGGCCTTAATATCTCT 59.675 47.826 1.32 0.00 35.97 3.10
123 124 4.202367 CCGAACAGGGCCTTAATATCTCTT 60.202 45.833 1.32 0.00 35.97 2.85
124 125 5.011738 CCGAACAGGGCCTTAATATCTCTTA 59.988 44.000 1.32 0.00 35.97 2.10
125 126 6.463897 CCGAACAGGGCCTTAATATCTCTTAA 60.464 42.308 1.32 0.00 35.97 1.85
126 127 6.990349 CGAACAGGGCCTTAATATCTCTTAAA 59.010 38.462 1.32 0.00 0.00 1.52
127 128 7.041984 CGAACAGGGCCTTAATATCTCTTAAAC 60.042 40.741 1.32 0.00 0.00 2.01
128 129 7.453141 ACAGGGCCTTAATATCTCTTAAACT 57.547 36.000 1.32 0.00 0.00 2.66
129 130 8.562949 ACAGGGCCTTAATATCTCTTAAACTA 57.437 34.615 1.32 0.00 0.00 2.24
130 131 9.172060 ACAGGGCCTTAATATCTCTTAAACTAT 57.828 33.333 1.32 0.00 0.00 2.12
133 134 9.451002 GGGCCTTAATATCTCTTAAACTATTCC 57.549 37.037 0.84 0.00 0.00 3.01
134 135 9.451002 GGCCTTAATATCTCTTAAACTATTCCC 57.549 37.037 0.00 0.00 0.00 3.97
183 184 9.916397 GAATAGTAAGGACACATAATTTTGACG 57.084 33.333 2.69 0.00 0.00 4.35
184 185 9.444600 AATAGTAAGGACACATAATTTTGACGT 57.555 29.630 2.69 0.00 0.00 4.34
186 187 8.836268 AGTAAGGACACATAATTTTGACGTAA 57.164 30.769 2.69 0.00 0.00 3.18
187 188 9.444600 AGTAAGGACACATAATTTTGACGTAAT 57.555 29.630 2.69 0.00 0.00 1.89
188 189 9.485591 GTAAGGACACATAATTTTGACGTAATG 57.514 33.333 2.69 0.00 0.00 1.90
189 190 7.681939 AGGACACATAATTTTGACGTAATGT 57.318 32.000 2.69 0.00 0.00 2.71
190 191 7.526608 AGGACACATAATTTTGACGTAATGTG 58.473 34.615 10.74 10.74 46.01 3.21
191 192 7.389330 AGGACACATAATTTTGACGTAATGTGA 59.611 33.333 17.39 0.00 44.30 3.58
192 193 7.692291 GGACACATAATTTTGACGTAATGTGAG 59.308 37.037 17.39 8.04 44.30 3.51
193 194 8.094798 ACACATAATTTTGACGTAATGTGAGT 57.905 30.769 17.39 8.47 44.30 3.41
194 195 8.564574 ACACATAATTTTGACGTAATGTGAGTT 58.435 29.630 17.39 0.00 44.30 3.01
195 196 9.393249 CACATAATTTTGACGTAATGTGAGTTT 57.607 29.630 7.32 0.00 44.30 2.66
196 197 9.959749 ACATAATTTTGACGTAATGTGAGTTTT 57.040 25.926 2.69 0.00 0.00 2.43
236 237 6.934048 TTTTTGAGATTTCGCCCAAAATTT 57.066 29.167 0.00 0.00 38.02 1.82
237 238 6.934048 TTTTGAGATTTCGCCCAAAATTTT 57.066 29.167 0.00 0.00 34.70 1.82
238 239 6.934048 TTTGAGATTTCGCCCAAAATTTTT 57.066 29.167 0.00 0.00 0.00 1.94
239 240 8.438676 TTTTGAGATTTCGCCCAAAATTTTTA 57.561 26.923 0.00 0.00 34.70 1.52
240 241 8.438676 TTTGAGATTTCGCCCAAAATTTTTAA 57.561 26.923 0.00 0.00 0.00 1.52
241 242 8.614469 TTGAGATTTCGCCCAAAATTTTTAAT 57.386 26.923 0.00 0.00 0.00 1.40
242 243 9.712305 TTGAGATTTCGCCCAAAATTTTTAATA 57.288 25.926 0.00 0.00 0.00 0.98
243 244 9.712305 TGAGATTTCGCCCAAAATTTTTAATAA 57.288 25.926 0.00 0.00 0.00 1.40
248 249 9.495572 TTTCGCCCAAAATTTTTAATAATCTGT 57.504 25.926 0.00 0.00 0.00 3.41
249 250 8.472683 TCGCCCAAAATTTTTAATAATCTGTG 57.527 30.769 0.00 0.00 0.00 3.66
250 251 8.307483 TCGCCCAAAATTTTTAATAATCTGTGA 58.693 29.630 0.00 0.00 0.00 3.58
251 252 9.097257 CGCCCAAAATTTTTAATAATCTGTGAT 57.903 29.630 0.00 0.00 0.00 3.06
303 304 7.543359 AAAAATTCTGACCCATTCATCTTCA 57.457 32.000 0.00 0.00 32.17 3.02
304 305 7.543359 AAAATTCTGACCCATTCATCTTCAA 57.457 32.000 0.00 0.00 32.17 2.69
305 306 7.729124 AAATTCTGACCCATTCATCTTCAAT 57.271 32.000 0.00 0.00 32.17 2.57
306 307 7.729124 AATTCTGACCCATTCATCTTCAATT 57.271 32.000 0.00 0.00 32.17 2.32
307 308 8.827832 AATTCTGACCCATTCATCTTCAATTA 57.172 30.769 0.00 0.00 32.17 1.40
308 309 9.430399 AATTCTGACCCATTCATCTTCAATTAT 57.570 29.630 0.00 0.00 32.17 1.28
309 310 7.812690 TCTGACCCATTCATCTTCAATTATG 57.187 36.000 0.00 0.00 32.17 1.90
310 311 6.774170 TCTGACCCATTCATCTTCAATTATGG 59.226 38.462 0.00 0.00 32.17 2.74
311 312 5.302568 TGACCCATTCATCTTCAATTATGGC 59.697 40.000 0.00 0.00 32.96 4.40
312 313 5.210430 ACCCATTCATCTTCAATTATGGCA 58.790 37.500 0.00 0.00 32.96 4.92
313 314 5.303589 ACCCATTCATCTTCAATTATGGCAG 59.696 40.000 0.00 0.00 32.96 4.85
314 315 5.303589 CCCATTCATCTTCAATTATGGCAGT 59.696 40.000 0.00 0.00 32.96 4.40
315 316 6.213677 CCATTCATCTTCAATTATGGCAGTG 58.786 40.000 0.00 0.00 0.00 3.66
316 317 4.906065 TCATCTTCAATTATGGCAGTGC 57.094 40.909 6.55 6.55 0.00 4.40
317 318 4.271661 TCATCTTCAATTATGGCAGTGCA 58.728 39.130 18.61 3.40 0.00 4.57
318 319 4.705991 TCATCTTCAATTATGGCAGTGCAA 59.294 37.500 18.61 5.88 0.00 4.08
319 320 4.439305 TCTTCAATTATGGCAGTGCAAC 57.561 40.909 18.61 0.22 0.00 4.17
320 321 3.825585 TCTTCAATTATGGCAGTGCAACA 59.174 39.130 18.61 7.01 41.43 3.33
321 322 4.280425 TCTTCAATTATGGCAGTGCAACAA 59.720 37.500 18.61 0.09 41.43 2.83
322 323 4.597404 TCAATTATGGCAGTGCAACAAA 57.403 36.364 18.61 4.43 41.43 2.83
323 324 4.305769 TCAATTATGGCAGTGCAACAAAC 58.694 39.130 18.61 0.00 41.43 2.93
324 325 4.056740 CAATTATGGCAGTGCAACAAACA 58.943 39.130 18.61 4.58 41.43 2.83
325 326 4.540359 ATTATGGCAGTGCAACAAACAT 57.460 36.364 18.61 12.04 41.43 2.71
326 327 2.443887 ATGGCAGTGCAACAAACATC 57.556 45.000 18.61 0.00 41.43 3.06
327 328 0.030504 TGGCAGTGCAACAAACATCG 59.969 50.000 18.61 0.00 41.43 3.84
328 329 0.310543 GGCAGTGCAACAAACATCGA 59.689 50.000 18.61 0.00 41.43 3.59
329 330 1.268999 GGCAGTGCAACAAACATCGAA 60.269 47.619 18.61 0.00 41.43 3.71
330 331 2.458951 GCAGTGCAACAAACATCGAAA 58.541 42.857 11.09 0.00 41.43 3.46
331 332 2.857152 GCAGTGCAACAAACATCGAAAA 59.143 40.909 11.09 0.00 41.43 2.29
332 333 3.301771 GCAGTGCAACAAACATCGAAAAC 60.302 43.478 11.09 0.00 41.43 2.43
333 334 3.856521 CAGTGCAACAAACATCGAAAACA 59.143 39.130 0.00 0.00 41.43 2.83
334 335 4.325741 CAGTGCAACAAACATCGAAAACAA 59.674 37.500 0.00 0.00 41.43 2.83
335 336 5.005586 CAGTGCAACAAACATCGAAAACAAT 59.994 36.000 0.00 0.00 41.43 2.71
336 337 6.198029 CAGTGCAACAAACATCGAAAACAATA 59.802 34.615 0.00 0.00 41.43 1.90
337 338 6.754209 AGTGCAACAAACATCGAAAACAATAA 59.246 30.769 0.00 0.00 41.43 1.40
338 339 7.276658 AGTGCAACAAACATCGAAAACAATAAA 59.723 29.630 0.00 0.00 41.43 1.40
339 340 7.900352 GTGCAACAAACATCGAAAACAATAAAA 59.100 29.630 0.00 0.00 36.32 1.52
340 341 8.443160 TGCAACAAACATCGAAAACAATAAAAA 58.557 25.926 0.00 0.00 0.00 1.94
341 342 9.432077 GCAACAAACATCGAAAACAATAAAAAT 57.568 25.926 0.00 0.00 0.00 1.82
362 363 9.675464 AAAAATTACATTAAGATCCGTAGACCA 57.325 29.630 0.00 0.00 0.00 4.02
363 364 8.658499 AAATTACATTAAGATCCGTAGACCAC 57.342 34.615 0.00 0.00 0.00 4.16
364 365 4.667519 ACATTAAGATCCGTAGACCACC 57.332 45.455 0.00 0.00 0.00 4.61
365 366 4.287552 ACATTAAGATCCGTAGACCACCT 58.712 43.478 0.00 0.00 0.00 4.00
366 367 5.452255 ACATTAAGATCCGTAGACCACCTA 58.548 41.667 0.00 0.00 0.00 3.08
367 368 5.535406 ACATTAAGATCCGTAGACCACCTAG 59.465 44.000 0.00 0.00 0.00 3.02
368 369 1.984066 AGATCCGTAGACCACCTAGC 58.016 55.000 0.00 0.00 0.00 3.42
369 370 1.214673 AGATCCGTAGACCACCTAGCA 59.785 52.381 0.00 0.00 0.00 3.49
370 371 1.337387 GATCCGTAGACCACCTAGCAC 59.663 57.143 0.00 0.00 0.00 4.40
371 372 0.682209 TCCGTAGACCACCTAGCACC 60.682 60.000 0.00 0.00 0.00 5.01
372 373 1.432251 CGTAGACCACCTAGCACCG 59.568 63.158 0.00 0.00 0.00 4.94
373 374 1.028330 CGTAGACCACCTAGCACCGA 61.028 60.000 0.00 0.00 0.00 4.69
374 375 0.455005 GTAGACCACCTAGCACCGAC 59.545 60.000 0.00 0.00 0.00 4.79
375 376 0.330604 TAGACCACCTAGCACCGACT 59.669 55.000 0.00 0.00 0.00 4.18
376 377 0.330604 AGACCACCTAGCACCGACTA 59.669 55.000 0.00 0.00 0.00 2.59
377 378 0.455005 GACCACCTAGCACCGACTAC 59.545 60.000 0.00 0.00 0.00 2.73
378 379 0.251474 ACCACCTAGCACCGACTACA 60.251 55.000 0.00 0.00 0.00 2.74
379 380 0.892755 CCACCTAGCACCGACTACAA 59.107 55.000 0.00 0.00 0.00 2.41
380 381 1.480954 CCACCTAGCACCGACTACAAT 59.519 52.381 0.00 0.00 0.00 2.71
381 382 2.481449 CCACCTAGCACCGACTACAATC 60.481 54.545 0.00 0.00 0.00 2.67
382 383 2.165641 CACCTAGCACCGACTACAATCA 59.834 50.000 0.00 0.00 0.00 2.57
383 384 2.165845 ACCTAGCACCGACTACAATCAC 59.834 50.000 0.00 0.00 0.00 3.06
384 385 2.427453 CCTAGCACCGACTACAATCACT 59.573 50.000 0.00 0.00 0.00 3.41
385 386 3.630769 CCTAGCACCGACTACAATCACTA 59.369 47.826 0.00 0.00 0.00 2.74
386 387 4.097437 CCTAGCACCGACTACAATCACTAA 59.903 45.833 0.00 0.00 0.00 2.24
387 388 4.530710 AGCACCGACTACAATCACTAAA 57.469 40.909 0.00 0.00 0.00 1.85
388 389 4.495422 AGCACCGACTACAATCACTAAAG 58.505 43.478 0.00 0.00 0.00 1.85
389 390 3.062234 GCACCGACTACAATCACTAAAGC 59.938 47.826 0.00 0.00 0.00 3.51
390 391 4.242475 CACCGACTACAATCACTAAAGCA 58.758 43.478 0.00 0.00 0.00 3.91
391 392 4.688879 CACCGACTACAATCACTAAAGCAA 59.311 41.667 0.00 0.00 0.00 3.91
392 393 4.929808 ACCGACTACAATCACTAAAGCAAG 59.070 41.667 0.00 0.00 0.00 4.01
393 394 4.201724 CCGACTACAATCACTAAAGCAAGC 60.202 45.833 0.00 0.00 0.00 4.01
394 395 4.201724 CGACTACAATCACTAAAGCAAGCC 60.202 45.833 0.00 0.00 0.00 4.35
395 396 3.684788 ACTACAATCACTAAAGCAAGCCG 59.315 43.478 0.00 0.00 0.00 5.52
396 397 2.778299 ACAATCACTAAAGCAAGCCGA 58.222 42.857 0.00 0.00 0.00 5.54
397 398 3.146066 ACAATCACTAAAGCAAGCCGAA 58.854 40.909 0.00 0.00 0.00 4.30
398 399 3.758554 ACAATCACTAAAGCAAGCCGAAT 59.241 39.130 0.00 0.00 0.00 3.34
399 400 4.218417 ACAATCACTAAAGCAAGCCGAATT 59.782 37.500 0.00 0.00 0.00 2.17
400 401 4.622701 ATCACTAAAGCAAGCCGAATTC 57.377 40.909 0.00 0.00 0.00 2.17
401 402 2.415168 TCACTAAAGCAAGCCGAATTCG 59.585 45.455 20.92 20.92 39.44 3.34
402 403 2.159627 CACTAAAGCAAGCCGAATTCGT 59.840 45.455 25.10 6.12 37.74 3.85
403 404 2.159627 ACTAAAGCAAGCCGAATTCGTG 59.840 45.455 25.10 17.88 37.74 4.35
404 405 0.387239 AAAGCAAGCCGAATTCGTGC 60.387 50.000 25.81 25.81 38.58 5.34
405 406 2.513065 AAGCAAGCCGAATTCGTGCG 62.513 55.000 26.32 17.89 41.66 5.34
410 411 3.202001 CCGAATTCGTGCGGCCAT 61.202 61.111 25.10 0.00 41.17 4.40
411 412 2.324477 CGAATTCGTGCGGCCATC 59.676 61.111 19.67 0.00 34.11 3.51
412 413 2.460275 CGAATTCGTGCGGCCATCA 61.460 57.895 19.67 0.00 34.11 3.07
413 414 1.775039 CGAATTCGTGCGGCCATCAT 61.775 55.000 19.67 0.00 34.11 2.45
414 415 0.040958 GAATTCGTGCGGCCATCATC 60.041 55.000 2.24 0.00 0.00 2.92
415 416 1.775039 AATTCGTGCGGCCATCATCG 61.775 55.000 2.24 7.04 0.00 3.84
442 443 4.029186 CGCCAGAGCTGCGCAAAA 62.029 61.111 13.05 0.00 46.01 2.44
443 444 2.429739 GCCAGAGCTGCGCAAAAC 60.430 61.111 13.05 3.76 35.50 2.43
444 445 2.912624 GCCAGAGCTGCGCAAAACT 61.913 57.895 13.05 9.51 35.50 2.66
445 446 1.656441 CCAGAGCTGCGCAAAACTT 59.344 52.632 13.05 0.00 0.00 2.66
446 447 0.662374 CCAGAGCTGCGCAAAACTTG 60.662 55.000 13.05 6.57 0.00 3.16
447 448 0.029834 CAGAGCTGCGCAAAACTTGT 59.970 50.000 13.05 0.00 0.00 3.16
448 449 0.740737 AGAGCTGCGCAAAACTTGTT 59.259 45.000 13.05 0.00 0.00 2.83
449 450 0.848305 GAGCTGCGCAAAACTTGTTG 59.152 50.000 13.05 0.00 0.00 3.33
450 451 0.173255 AGCTGCGCAAAACTTGTTGT 59.827 45.000 13.05 0.00 0.00 3.32
451 452 1.403679 AGCTGCGCAAAACTTGTTGTA 59.596 42.857 13.05 0.00 0.00 2.41
452 453 1.780860 GCTGCGCAAAACTTGTTGTAG 59.219 47.619 13.05 0.00 0.00 2.74
453 454 2.794631 GCTGCGCAAAACTTGTTGTAGT 60.795 45.455 13.05 0.00 0.00 2.73
454 455 3.547214 GCTGCGCAAAACTTGTTGTAGTA 60.547 43.478 13.05 0.00 0.00 1.82
455 456 4.203950 TGCGCAAAACTTGTTGTAGTAG 57.796 40.909 8.16 0.00 0.00 2.57
456 457 3.872182 TGCGCAAAACTTGTTGTAGTAGA 59.128 39.130 8.16 0.00 0.00 2.59
457 458 4.209112 GCGCAAAACTTGTTGTAGTAGAC 58.791 43.478 0.30 0.00 0.00 2.59
458 459 4.260456 GCGCAAAACTTGTTGTAGTAGACA 60.260 41.667 0.30 0.00 35.78 3.41
459 460 5.432157 CGCAAAACTTGTTGTAGTAGACAG 58.568 41.667 0.00 0.00 39.88 3.51
460 461 5.006358 CGCAAAACTTGTTGTAGTAGACAGT 59.994 40.000 0.00 0.00 39.88 3.55
461 462 6.456449 CGCAAAACTTGTTGTAGTAGACAGTT 60.456 38.462 0.00 0.00 39.88 3.16
462 463 6.687105 GCAAAACTTGTTGTAGTAGACAGTTG 59.313 38.462 0.00 0.00 39.88 3.16
463 464 7.413657 GCAAAACTTGTTGTAGTAGACAGTTGA 60.414 37.037 0.00 0.00 39.88 3.18
464 465 8.447833 CAAAACTTGTTGTAGTAGACAGTTGAA 58.552 33.333 0.00 0.00 39.88 2.69
465 466 8.556213 AAACTTGTTGTAGTAGACAGTTGAAA 57.444 30.769 0.00 0.00 39.88 2.69
466 467 8.556213 AACTTGTTGTAGTAGACAGTTGAAAA 57.444 30.769 0.00 0.00 39.88 2.29
467 468 8.556213 ACTTGTTGTAGTAGACAGTTGAAAAA 57.444 30.769 0.00 0.00 39.88 1.94
468 469 8.665685 ACTTGTTGTAGTAGACAGTTGAAAAAG 58.334 33.333 0.00 0.00 39.88 2.27
469 470 8.556213 TTGTTGTAGTAGACAGTTGAAAAAGT 57.444 30.769 0.00 0.00 39.88 2.66
470 471 8.193250 TGTTGTAGTAGACAGTTGAAAAAGTC 57.807 34.615 0.00 0.00 39.88 3.01
471 472 7.820386 TGTTGTAGTAGACAGTTGAAAAAGTCA 59.180 33.333 0.00 0.00 39.88 3.41
472 473 8.827677 GTTGTAGTAGACAGTTGAAAAAGTCAT 58.172 33.333 0.00 0.00 39.88 3.06
473 474 8.589335 TGTAGTAGACAGTTGAAAAAGTCATC 57.411 34.615 0.00 0.00 36.08 2.92
474 475 8.201464 TGTAGTAGACAGTTGAAAAAGTCATCA 58.799 33.333 0.00 0.00 36.08 3.07
475 476 9.209175 GTAGTAGACAGTTGAAAAAGTCATCAT 57.791 33.333 0.00 0.00 36.08 2.45
476 477 8.092521 AGTAGACAGTTGAAAAAGTCATCATG 57.907 34.615 0.00 0.00 36.08 3.07
477 478 5.766222 AGACAGTTGAAAAAGTCATCATGC 58.234 37.500 0.00 0.00 36.08 4.06
478 479 5.533903 AGACAGTTGAAAAAGTCATCATGCT 59.466 36.000 0.00 0.00 36.08 3.79
479 480 6.712095 AGACAGTTGAAAAAGTCATCATGCTA 59.288 34.615 0.00 0.00 36.08 3.49
480 481 7.229306 AGACAGTTGAAAAAGTCATCATGCTAA 59.771 33.333 0.00 0.00 36.08 3.09
481 482 7.365741 ACAGTTGAAAAAGTCATCATGCTAAG 58.634 34.615 0.00 0.00 35.70 2.18
482 483 7.013655 ACAGTTGAAAAAGTCATCATGCTAAGT 59.986 33.333 0.00 0.00 35.70 2.24
483 484 7.536622 CAGTTGAAAAAGTCATCATGCTAAGTC 59.463 37.037 0.00 0.00 35.70 3.01
484 485 6.500684 TGAAAAAGTCATCATGCTAAGTCC 57.499 37.500 0.00 0.00 0.00 3.85
485 486 5.415701 TGAAAAAGTCATCATGCTAAGTCCC 59.584 40.000 0.00 0.00 0.00 4.46
486 487 4.574674 AAAGTCATCATGCTAAGTCCCA 57.425 40.909 0.00 0.00 0.00 4.37
487 488 4.574674 AAGTCATCATGCTAAGTCCCAA 57.425 40.909 0.00 0.00 0.00 4.12
488 489 3.878778 AGTCATCATGCTAAGTCCCAAC 58.121 45.455 0.00 0.00 0.00 3.77
489 490 3.521126 AGTCATCATGCTAAGTCCCAACT 59.479 43.478 0.00 0.00 37.32 3.16
490 491 3.624861 GTCATCATGCTAAGTCCCAACTG 59.375 47.826 0.00 0.00 35.36 3.16
491 492 2.113860 TCATGCTAAGTCCCAACTGC 57.886 50.000 0.00 0.00 35.36 4.40
492 493 1.098050 CATGCTAAGTCCCAACTGCC 58.902 55.000 0.00 0.00 35.36 4.85
493 494 0.392998 ATGCTAAGTCCCAACTGCCG 60.393 55.000 0.00 0.00 35.36 5.69
494 495 2.399356 GCTAAGTCCCAACTGCCGC 61.399 63.158 0.00 0.00 35.36 6.53
495 496 1.745489 CTAAGTCCCAACTGCCGCC 60.745 63.158 0.00 0.00 35.36 6.13
496 497 3.599285 TAAGTCCCAACTGCCGCCG 62.599 63.158 0.00 0.00 35.36 6.46
498 499 4.778143 GTCCCAACTGCCGCCGAT 62.778 66.667 0.00 0.00 0.00 4.18
499 500 4.776322 TCCCAACTGCCGCCGATG 62.776 66.667 0.00 0.00 0.00 3.84
500 501 4.776322 CCCAACTGCCGCCGATGA 62.776 66.667 0.00 0.00 0.00 2.92
501 502 2.745884 CCAACTGCCGCCGATGAA 60.746 61.111 0.00 0.00 0.00 2.57
502 503 2.331893 CCAACTGCCGCCGATGAAA 61.332 57.895 0.00 0.00 0.00 2.69
503 504 1.578926 CAACTGCCGCCGATGAAAA 59.421 52.632 0.00 0.00 0.00 2.29
504 505 0.454957 CAACTGCCGCCGATGAAAAG 60.455 55.000 0.00 0.00 0.00 2.27
505 506 0.605319 AACTGCCGCCGATGAAAAGA 60.605 50.000 0.00 0.00 0.00 2.52
506 507 0.605319 ACTGCCGCCGATGAAAAGAA 60.605 50.000 0.00 0.00 0.00 2.52
507 508 0.097674 CTGCCGCCGATGAAAAGAAG 59.902 55.000 0.00 0.00 0.00 2.85
508 509 1.226407 GCCGCCGATGAAAAGAAGC 60.226 57.895 0.00 0.00 0.00 3.86
509 510 1.060937 CCGCCGATGAAAAGAAGCG 59.939 57.895 0.00 0.00 42.99 4.68
510 511 1.635663 CCGCCGATGAAAAGAAGCGT 61.636 55.000 0.00 0.00 41.87 5.07
511 512 0.996462 CGCCGATGAAAAGAAGCGTA 59.004 50.000 0.00 0.00 38.81 4.42
512 513 1.005975 CGCCGATGAAAAGAAGCGTAG 60.006 52.381 0.00 0.00 38.81 3.51
513 514 2.268298 GCCGATGAAAAGAAGCGTAGA 58.732 47.619 0.00 0.00 0.00 2.59
514 515 2.029365 GCCGATGAAAAGAAGCGTAGAC 59.971 50.000 0.00 0.00 0.00 2.59
515 516 2.603560 CCGATGAAAAGAAGCGTAGACC 59.396 50.000 0.00 0.00 0.00 3.85
516 517 2.279136 CGATGAAAAGAAGCGTAGACCG 59.721 50.000 0.00 0.00 40.40 4.79
517 518 3.508762 GATGAAAAGAAGCGTAGACCGA 58.491 45.455 0.00 0.00 39.56 4.69
518 519 3.374220 TGAAAAGAAGCGTAGACCGAA 57.626 42.857 0.00 0.00 39.56 4.30
519 520 3.719924 TGAAAAGAAGCGTAGACCGAAA 58.280 40.909 0.00 0.00 39.56 3.46
520 521 3.739300 TGAAAAGAAGCGTAGACCGAAAG 59.261 43.478 0.00 0.00 39.56 2.62
532 533 4.547859 CGAAAGGATCCAGCCTGG 57.452 61.111 15.82 3.69 38.58 4.45
533 534 1.604378 CGAAAGGATCCAGCCTGGT 59.396 57.895 15.82 0.00 39.03 4.00
534 535 0.830648 CGAAAGGATCCAGCCTGGTA 59.169 55.000 15.82 0.00 39.03 3.25
535 536 1.417890 CGAAAGGATCCAGCCTGGTAT 59.582 52.381 15.82 2.94 39.03 2.73
536 537 2.632996 CGAAAGGATCCAGCCTGGTATA 59.367 50.000 15.82 0.00 39.03 1.47
537 538 3.071023 CGAAAGGATCCAGCCTGGTATAA 59.929 47.826 15.82 0.00 39.03 0.98
538 539 4.390264 GAAAGGATCCAGCCTGGTATAAC 58.610 47.826 15.82 0.00 39.03 1.89
553 554 8.135529 GCCTGGTATAACTGGTTGAAATTTATC 58.864 37.037 14.55 0.00 32.57 1.75
610 611 7.065803 ACTGTATACAATGTTTCAGATTTCCCG 59.934 37.037 7.06 0.00 0.00 5.14
613 614 2.143876 ATGTTTCAGATTTCCCGGGG 57.856 50.000 23.50 6.77 0.00 5.73
632 633 0.243636 GGGGTGTGAAAATTCGGCAG 59.756 55.000 0.00 0.00 0.00 4.85
642 643 5.174943 GTGAAAATTCGGCAGTTTTTACCAG 59.825 40.000 0.00 0.00 31.49 4.00
643 644 4.929819 AAATTCGGCAGTTTTTACCAGT 57.070 36.364 0.00 0.00 0.00 4.00
649 650 3.794564 CGGCAGTTTTTACCAGTTTGTTC 59.205 43.478 0.00 0.00 0.00 3.18
666 667 4.782019 TGTTCTGGTAAATTCATGTGGC 57.218 40.909 0.00 0.00 0.00 5.01
685 686 1.201429 CCCCCACTGTCAGCCTACTT 61.201 60.000 0.00 0.00 0.00 2.24
687 688 1.906574 CCCCACTGTCAGCCTACTTAA 59.093 52.381 0.00 0.00 0.00 1.85
690 691 3.448686 CCACTGTCAGCCTACTTAATCG 58.551 50.000 0.00 0.00 0.00 3.34
693 694 3.181499 ACTGTCAGCCTACTTAATCGTCG 60.181 47.826 0.00 0.00 0.00 5.12
694 695 3.011818 TGTCAGCCTACTTAATCGTCGA 58.988 45.455 0.00 0.00 0.00 4.20
695 696 3.064958 TGTCAGCCTACTTAATCGTCGAG 59.935 47.826 0.00 0.00 0.00 4.04
696 697 3.065095 GTCAGCCTACTTAATCGTCGAGT 59.935 47.826 0.00 0.00 0.00 4.18
697 698 4.272018 GTCAGCCTACTTAATCGTCGAGTA 59.728 45.833 0.00 0.00 0.00 2.59
698 699 4.877823 TCAGCCTACTTAATCGTCGAGTAA 59.122 41.667 13.84 13.84 0.00 2.24
699 700 5.007430 TCAGCCTACTTAATCGTCGAGTAAG 59.993 44.000 30.53 30.53 43.17 2.34
701 702 6.018425 CAGCCTACTTAATCGTCGAGTAAGTA 60.018 42.308 34.79 34.79 46.69 2.24
702 703 6.018343 AGCCTACTTAATCGTCGAGTAAGTAC 60.018 42.308 34.28 28.15 46.69 2.73
703 704 6.018343 GCCTACTTAATCGTCGAGTAAGTACT 60.018 42.308 34.28 22.14 46.69 2.73
741 742 1.153005 CCTACCGGCTACTCGTCCT 60.153 63.158 0.00 0.00 0.00 3.85
745 746 2.124236 CGGCTACTCGTCCTCCCT 60.124 66.667 0.00 0.00 0.00 4.20
746 747 2.188161 CGGCTACTCGTCCTCCCTC 61.188 68.421 0.00 0.00 0.00 4.30
749 750 1.526455 CTACTCGTCCTCCCTCCCG 60.526 68.421 0.00 0.00 0.00 5.14
750 751 2.962142 CTACTCGTCCTCCCTCCCGG 62.962 70.000 0.00 0.00 0.00 5.73
777 780 1.000731 CGAGGCCAAATTCAAAAGCCA 59.999 47.619 5.01 0.00 46.35 4.75
849 858 1.895238 GTTCCCAGATCCGTTCCGA 59.105 57.895 0.00 0.00 0.00 4.55
851 860 0.613853 TTCCCAGATCCGTTCCGACT 60.614 55.000 0.00 0.00 0.00 4.18
852 861 0.256752 TCCCAGATCCGTTCCGACTA 59.743 55.000 0.00 0.00 0.00 2.59
864 873 4.728102 CGACTACGGCCGCAACCA 62.728 66.667 28.58 4.27 35.72 3.67
905 929 2.761160 GTCCCGTCCACCCCAAAT 59.239 61.111 0.00 0.00 0.00 2.32
965 1017 3.451890 TCTTTCCTCTCTAGGGTTTCCC 58.548 50.000 0.00 0.00 43.84 3.97
996 1048 3.315140 GGATCTCTAGCCCCCGCC 61.315 72.222 0.00 0.00 34.57 6.13
1035 1087 3.775654 CCGACCTGCTCCTCCCAC 61.776 72.222 0.00 0.00 0.00 4.61
1548 1609 2.976099 TCCTGCAACGAGGAGATGA 58.024 52.632 0.00 0.00 37.20 2.92
1549 1610 0.820226 TCCTGCAACGAGGAGATGAG 59.180 55.000 0.00 0.00 37.20 2.90
1550 1611 0.809241 CCTGCAACGAGGAGATGAGC 60.809 60.000 0.00 0.00 38.04 4.26
1551 1612 0.809241 CTGCAACGAGGAGATGAGCC 60.809 60.000 0.00 0.00 38.04 4.70
1598 1659 3.378399 GAAGAGGTGCTCGGAGGCC 62.378 68.421 7.20 0.00 35.36 5.19
1703 1764 1.871772 CAAGCTCAAGTGGAAGGCG 59.128 57.895 0.00 0.00 0.00 5.52
1745 1806 2.269241 GCCCTCAAGAAGGTCCGG 59.731 66.667 0.00 0.00 44.56 5.14
1768 1829 0.522180 GAGTTCAGAGACGCCGAGAA 59.478 55.000 0.00 0.00 0.00 2.87
1817 1878 0.387112 CTGATCAGATCGGCGCTCTC 60.387 60.000 18.34 3.08 0.00 3.20
1841 1902 2.484264 GACCAAGTTGGATTCCAAGACG 59.516 50.000 28.80 9.23 44.82 4.18
1847 1908 2.235402 GTTGGATTCCAAGACGAGGGTA 59.765 50.000 18.49 0.00 44.82 3.69
1890 1951 2.598394 AAATGTGCAGCCAGGCGT 60.598 55.556 5.55 0.00 36.28 5.68
2033 2094 0.467384 AGAGGGATGGTGAGATTGCG 59.533 55.000 0.00 0.00 0.00 4.85
2067 2128 2.373169 TCACTGGCTGAGAAATCCACTT 59.627 45.455 0.00 0.00 0.00 3.16
2274 2335 6.110707 AGTCGTAAAGAAACAGAGTGGAAAA 58.889 36.000 0.00 0.00 0.00 2.29
2420 2481 3.914312 TGTAGAGAACTTGGAAGCTTCG 58.086 45.455 19.91 9.17 0.00 3.79
2442 2503 1.178276 AGTCCGTCTTGCTGTAGAGG 58.822 55.000 0.00 0.00 0.00 3.69
2450 2511 3.565902 GTCTTGCTGTAGAGGCAAAGTTT 59.434 43.478 2.87 0.00 46.81 2.66
2452 2513 4.275936 TCTTGCTGTAGAGGCAAAGTTTTC 59.724 41.667 2.87 0.00 46.81 2.29
2468 2529 3.442977 AGTTTTCTGATTCCTGCTCATGC 59.557 43.478 0.00 0.00 40.20 4.06
2501 2562 0.379669 AACTGAATATGCAGCAGCGC 59.620 50.000 10.93 0.00 46.23 5.92
2562 2623 8.491045 AAATCAATTGGAGGAAAAGAACCTTA 57.509 30.769 5.42 0.00 37.93 2.69
2657 2718 5.782331 ACAGCTAGAATATATGGAGCAGGAA 59.218 40.000 13.39 0.00 35.55 3.36
2674 2735 4.151157 GCAGGAACATGAAAAGATGCAAAC 59.849 41.667 0.00 0.00 32.79 2.93
2745 2806 7.250569 TGTTCACTGCTTAAAAGAAGAAACTG 58.749 34.615 4.66 0.00 35.12 3.16
2937 2998 5.675538 AGACTGAACTCAAGGGTTATATGC 58.324 41.667 0.00 0.00 0.00 3.14
3005 3066 4.916983 CAAAATTGGAACTGAGGTGTCA 57.083 40.909 0.00 0.00 0.00 3.58
3056 3117 4.681483 GGTGCTCTTAATGAAACAAACTGC 59.319 41.667 0.00 0.00 0.00 4.40
3300 3361 6.389830 TTGCTCTCAATGAAGCAAACTTTA 57.610 33.333 21.48 6.71 43.15 1.85
3621 3682 0.039708 GCAAGCACTGGAGAGTTTGC 60.040 55.000 9.20 9.20 42.70 3.68
3622 3683 0.236711 CAAGCACTGGAGAGTTTGCG 59.763 55.000 0.00 0.00 0.00 4.85
4488 4549 9.123902 TGAAATCCAGAACAAAGGATATATGTG 57.876 33.333 0.00 0.00 43.67 3.21
4493 4554 7.933577 TCCAGAACAAAGGATATATGTGATGTC 59.066 37.037 0.00 0.00 0.00 3.06
4500 4561 5.473931 AGGATATATGTGATGTCGCTGTTC 58.526 41.667 0.00 0.00 0.00 3.18
4546 4607 3.873952 GAGCTGAATGGAATCACCTGTAC 59.126 47.826 0.00 0.00 39.86 2.90
4684 4745 5.558463 GCTTAGAGAAACCAAACGTGAGAAC 60.558 44.000 0.00 0.00 0.00 3.01
5049 5112 9.214957 TCTCACCTGTTTATAACTGTATGTTTG 57.785 33.333 0.00 0.00 39.89 2.93
5225 5288 3.317711 CGTCTCTCAGGTAGCAGATGAAT 59.682 47.826 0.00 0.00 0.00 2.57
5342 5405 7.350382 ACTAACTGTCTGAAGATGAGGATCTA 58.650 38.462 0.00 0.00 38.03 1.98
5413 5476 1.474077 AGGAATGATGACTTTTGGCGC 59.526 47.619 0.00 0.00 0.00 6.53
5414 5477 1.538276 GAATGATGACTTTTGGCGCG 58.462 50.000 0.00 0.00 0.00 6.86
5415 5478 0.171007 AATGATGACTTTTGGCGCGG 59.829 50.000 8.83 0.00 0.00 6.46
5416 5479 1.656818 ATGATGACTTTTGGCGCGGG 61.657 55.000 8.83 0.00 0.00 6.13
5417 5480 3.051392 GATGACTTTTGGCGCGGGG 62.051 63.158 8.83 0.00 0.00 5.73
5439 5502 5.254115 GGGGAATGCTAATATAACCTGTCC 58.746 45.833 0.00 0.00 0.00 4.02
5441 5504 5.940470 GGGAATGCTAATATAACCTGTCCTG 59.060 44.000 0.00 0.00 0.00 3.86
5463 5526 6.810182 CCTGATTTTGAAGCTAACTCCAATTG 59.190 38.462 0.00 0.00 0.00 2.32
5464 5527 6.690530 TGATTTTGAAGCTAACTCCAATTGG 58.309 36.000 19.08 19.08 0.00 3.16
5485 5548 6.142818 TGGTGTACCAAAGACAAAGAAATG 57.857 37.500 0.24 0.00 44.35 2.32
5486 5549 4.982295 GGTGTACCAAAGACAAAGAAATGC 59.018 41.667 0.00 0.00 35.64 3.56
5487 5550 5.451242 GGTGTACCAAAGACAAAGAAATGCA 60.451 40.000 0.00 0.00 35.64 3.96
5490 5553 7.865385 GTGTACCAAAGACAAAGAAATGCATTA 59.135 33.333 13.39 0.00 0.00 1.90
5491 5554 8.081633 TGTACCAAAGACAAAGAAATGCATTAG 58.918 33.333 13.39 3.51 0.00 1.73
5492 5555 7.288810 ACCAAAGACAAAGAAATGCATTAGA 57.711 32.000 13.39 0.00 0.00 2.10
5493 5556 7.899973 ACCAAAGACAAAGAAATGCATTAGAT 58.100 30.769 13.39 0.00 0.00 1.98
5495 5558 9.211485 CCAAAGACAAAGAAATGCATTAGATTT 57.789 29.630 13.39 10.93 0.00 2.17
5498 5561 9.985730 AAGACAAAGAAATGCATTAGATTTTGA 57.014 25.926 26.89 0.00 0.00 2.69
5499 5562 9.985730 AGACAAAGAAATGCATTAGATTTTGAA 57.014 25.926 26.89 0.00 0.00 2.69
5517 5580 9.687717 GATTTTGAAAATTGTTGTGTACAGTTG 57.312 29.630 4.46 0.00 36.86 3.16
5523 5586 4.614555 TTGTTGTGTACAGTTGCTTCTG 57.385 40.909 0.00 7.06 38.19 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.299773 CTCCGCAGATTCCGAGAGC 60.300 63.158 0.00 0.00 0.00 4.09
6 7 1.299773 GCTCCGCAGATTCCGAGAG 60.300 63.158 0.00 0.00 0.00 3.20
7 8 2.808315 GCTCCGCAGATTCCGAGA 59.192 61.111 0.00 0.00 0.00 4.04
8 9 2.656651 CGCTCCGCAGATTCCGAG 60.657 66.667 0.00 0.00 0.00 4.63
9 10 4.207281 CCGCTCCGCAGATTCCGA 62.207 66.667 0.00 0.00 0.00 4.55
11 12 2.869503 TTTCCCGCTCCGCAGATTCC 62.870 60.000 0.00 0.00 0.00 3.01
12 13 1.024579 TTTTCCCGCTCCGCAGATTC 61.025 55.000 0.00 0.00 0.00 2.52
13 14 1.002624 TTTTCCCGCTCCGCAGATT 60.003 52.632 0.00 0.00 0.00 2.40
14 15 1.745489 GTTTTCCCGCTCCGCAGAT 60.745 57.895 0.00 0.00 0.00 2.90
15 16 1.537814 TAGTTTTCCCGCTCCGCAGA 61.538 55.000 0.00 0.00 0.00 4.26
16 17 1.079405 TAGTTTTCCCGCTCCGCAG 60.079 57.895 0.00 0.00 0.00 5.18
17 18 1.375013 GTAGTTTTCCCGCTCCGCA 60.375 57.895 0.00 0.00 0.00 5.69
18 19 0.952010 TTGTAGTTTTCCCGCTCCGC 60.952 55.000 0.00 0.00 0.00 5.54
19 20 0.794473 GTTGTAGTTTTCCCGCTCCG 59.206 55.000 0.00 0.00 0.00 4.63
20 21 2.074576 GAGTTGTAGTTTTCCCGCTCC 58.925 52.381 0.00 0.00 0.00 4.70
21 22 2.074576 GGAGTTGTAGTTTTCCCGCTC 58.925 52.381 0.00 0.00 0.00 5.03
22 23 1.697982 AGGAGTTGTAGTTTTCCCGCT 59.302 47.619 0.00 0.00 0.00 5.52
23 24 2.180432 AGGAGTTGTAGTTTTCCCGC 57.820 50.000 0.00 0.00 0.00 6.13
24 25 2.735134 CGAAGGAGTTGTAGTTTTCCCG 59.265 50.000 0.00 0.00 0.00 5.14
25 26 3.736720 ACGAAGGAGTTGTAGTTTTCCC 58.263 45.455 0.00 0.00 0.00 3.97
26 27 5.746307 AAACGAAGGAGTTGTAGTTTTCC 57.254 39.130 0.00 0.00 34.14 3.13
27 28 9.003112 GTTTAAAACGAAGGAGTTGTAGTTTTC 57.997 33.333 7.28 0.00 40.67 2.29
28 29 8.733458 AGTTTAAAACGAAGGAGTTGTAGTTTT 58.267 29.630 8.74 8.74 42.21 2.43
29 30 8.179615 CAGTTTAAAACGAAGGAGTTGTAGTTT 58.820 33.333 0.00 0.00 34.14 2.66
30 31 7.677982 GCAGTTTAAAACGAAGGAGTTGTAGTT 60.678 37.037 0.00 0.00 34.14 2.24
31 32 6.238293 GCAGTTTAAAACGAAGGAGTTGTAGT 60.238 38.462 0.00 0.00 34.14 2.73
32 33 6.134061 GCAGTTTAAAACGAAGGAGTTGTAG 58.866 40.000 0.00 0.00 34.14 2.74
33 34 5.585445 TGCAGTTTAAAACGAAGGAGTTGTA 59.415 36.000 0.00 0.00 34.14 2.41
34 35 4.396790 TGCAGTTTAAAACGAAGGAGTTGT 59.603 37.500 0.00 0.00 34.14 3.32
35 36 4.915704 TGCAGTTTAAAACGAAGGAGTTG 58.084 39.130 0.00 0.00 34.14 3.16
36 37 4.036380 CCTGCAGTTTAAAACGAAGGAGTT 59.964 41.667 13.81 0.00 34.58 3.01
37 38 3.564225 CCTGCAGTTTAAAACGAAGGAGT 59.436 43.478 13.81 0.00 34.58 3.85
38 39 3.564225 ACCTGCAGTTTAAAACGAAGGAG 59.436 43.478 13.81 4.40 35.56 3.69
39 40 3.547746 ACCTGCAGTTTAAAACGAAGGA 58.452 40.909 13.81 0.00 35.56 3.36
40 41 3.304458 GGACCTGCAGTTTAAAACGAAGG 60.304 47.826 13.81 9.67 37.02 3.46
41 42 3.606153 CGGACCTGCAGTTTAAAACGAAG 60.606 47.826 13.81 0.00 36.23 3.79
42 43 2.288458 CGGACCTGCAGTTTAAAACGAA 59.712 45.455 13.81 0.00 36.23 3.85
43 44 1.868498 CGGACCTGCAGTTTAAAACGA 59.132 47.619 13.81 0.00 36.23 3.85
44 45 1.662026 GCGGACCTGCAGTTTAAAACG 60.662 52.381 13.81 8.20 36.23 3.60
45 46 1.335597 GGCGGACCTGCAGTTTAAAAC 60.336 52.381 13.81 0.00 36.28 2.43
46 47 0.955905 GGCGGACCTGCAGTTTAAAA 59.044 50.000 13.81 0.00 36.28 1.52
47 48 0.179015 TGGCGGACCTGCAGTTTAAA 60.179 50.000 13.81 0.00 36.63 1.52
48 49 0.179015 TTGGCGGACCTGCAGTTTAA 60.179 50.000 13.81 0.00 36.63 1.52
49 50 0.887387 GTTGGCGGACCTGCAGTTTA 60.887 55.000 13.81 0.00 36.63 2.01
50 51 2.193536 GTTGGCGGACCTGCAGTTT 61.194 57.895 13.81 0.00 36.63 2.66
51 52 2.594592 GTTGGCGGACCTGCAGTT 60.595 61.111 13.81 0.00 36.63 3.16
52 53 3.537206 GAGTTGGCGGACCTGCAGT 62.537 63.158 13.81 0.11 36.63 4.40
53 54 2.743928 GAGTTGGCGGACCTGCAG 60.744 66.667 6.78 6.78 36.63 4.41
54 55 4.329545 GGAGTTGGCGGACCTGCA 62.330 66.667 9.90 0.00 36.63 4.41
63 64 3.672295 CTCTGGGAGCGGAGTTGGC 62.672 68.421 0.00 0.00 0.00 4.52
64 65 1.831652 AACTCTGGGAGCGGAGTTGG 61.832 60.000 0.00 0.00 46.76 3.77
65 66 1.674057 AACTCTGGGAGCGGAGTTG 59.326 57.895 0.00 0.00 46.76 3.16
66 67 4.217112 AACTCTGGGAGCGGAGTT 57.783 55.556 0.00 0.00 44.72 3.01
67 68 1.534235 ACAACTCTGGGAGCGGAGT 60.534 57.895 0.00 0.00 43.60 3.85
68 69 1.079543 CACAACTCTGGGAGCGGAG 60.080 63.158 0.00 0.00 32.04 4.63
69 70 2.583441 CCACAACTCTGGGAGCGGA 61.583 63.158 0.00 0.00 32.04 5.54
70 71 2.046892 CCACAACTCTGGGAGCGG 60.047 66.667 0.00 0.00 32.04 5.52
71 72 1.079543 CTCCACAACTCTGGGAGCG 60.080 63.158 0.00 0.00 41.53 5.03
74 75 0.471780 TCTGCTCCACAACTCTGGGA 60.472 55.000 0.00 0.00 31.41 4.37
75 76 0.036577 CTCTGCTCCACAACTCTGGG 60.037 60.000 0.00 0.00 31.41 4.45
76 77 0.683973 ACTCTGCTCCACAACTCTGG 59.316 55.000 0.00 0.00 0.00 3.86
77 78 1.607509 CCACTCTGCTCCACAACTCTG 60.608 57.143 0.00 0.00 0.00 3.35
78 79 0.683973 CCACTCTGCTCCACAACTCT 59.316 55.000 0.00 0.00 0.00 3.24
79 80 0.394565 ACCACTCTGCTCCACAACTC 59.605 55.000 0.00 0.00 0.00 3.01
80 81 1.344763 GTACCACTCTGCTCCACAACT 59.655 52.381 0.00 0.00 0.00 3.16
81 82 1.608283 GGTACCACTCTGCTCCACAAC 60.608 57.143 7.15 0.00 0.00 3.32
82 83 0.685097 GGTACCACTCTGCTCCACAA 59.315 55.000 7.15 0.00 0.00 3.33
83 84 1.532604 CGGTACCACTCTGCTCCACA 61.533 60.000 13.54 0.00 0.00 4.17
84 85 1.215647 CGGTACCACTCTGCTCCAC 59.784 63.158 13.54 0.00 0.00 4.02
85 86 0.541063 TTCGGTACCACTCTGCTCCA 60.541 55.000 13.54 0.00 0.00 3.86
86 87 0.108756 GTTCGGTACCACTCTGCTCC 60.109 60.000 13.54 0.00 0.00 4.70
87 88 0.601558 TGTTCGGTACCACTCTGCTC 59.398 55.000 13.54 0.00 0.00 4.26
88 89 0.603569 CTGTTCGGTACCACTCTGCT 59.396 55.000 13.54 0.00 0.00 4.24
89 90 0.389948 CCTGTTCGGTACCACTCTGC 60.390 60.000 13.54 0.00 0.00 4.26
90 91 0.246635 CCCTGTTCGGTACCACTCTG 59.753 60.000 13.54 5.11 0.00 3.35
91 92 1.542187 GCCCTGTTCGGTACCACTCT 61.542 60.000 13.54 0.00 0.00 3.24
92 93 1.079336 GCCCTGTTCGGTACCACTC 60.079 63.158 13.54 1.47 0.00 3.51
93 94 2.590114 GGCCCTGTTCGGTACCACT 61.590 63.158 13.54 0.00 0.00 4.00
94 95 2.046604 GGCCCTGTTCGGTACCAC 60.047 66.667 13.54 3.88 0.00 4.16
95 96 0.544833 TAAGGCCCTGTTCGGTACCA 60.545 55.000 13.54 0.00 31.11 3.25
96 97 0.614812 TTAAGGCCCTGTTCGGTACC 59.385 55.000 0.16 0.16 0.00 3.34
97 98 2.704464 ATTAAGGCCCTGTTCGGTAC 57.296 50.000 0.00 0.00 0.00 3.34
98 99 4.228824 AGATATTAAGGCCCTGTTCGGTA 58.771 43.478 0.00 0.00 0.00 4.02
99 100 3.046374 AGATATTAAGGCCCTGTTCGGT 58.954 45.455 0.00 0.00 0.00 4.69
100 101 3.325135 AGAGATATTAAGGCCCTGTTCGG 59.675 47.826 0.00 0.00 0.00 4.30
101 102 4.608948 AGAGATATTAAGGCCCTGTTCG 57.391 45.455 0.00 0.00 0.00 3.95
102 103 7.993758 AGTTTAAGAGATATTAAGGCCCTGTTC 59.006 37.037 0.00 0.00 0.00 3.18
103 104 7.873195 AGTTTAAGAGATATTAAGGCCCTGTT 58.127 34.615 0.00 0.00 0.00 3.16
104 105 7.453141 AGTTTAAGAGATATTAAGGCCCTGT 57.547 36.000 0.00 0.00 0.00 4.00
107 108 9.451002 GGAATAGTTTAAGAGATATTAAGGCCC 57.549 37.037 0.00 0.00 0.00 5.80
108 109 9.451002 GGGAATAGTTTAAGAGATATTAAGGCC 57.549 37.037 0.00 0.00 0.00 5.19
157 158 9.916397 CGTCAAAATTATGTGTCCTTACTATTC 57.084 33.333 0.00 0.00 0.00 1.75
158 159 9.444600 ACGTCAAAATTATGTGTCCTTACTATT 57.555 29.630 0.00 0.00 0.00 1.73
160 161 9.926158 TTACGTCAAAATTATGTGTCCTTACTA 57.074 29.630 0.00 0.00 0.00 1.82
161 162 8.836268 TTACGTCAAAATTATGTGTCCTTACT 57.164 30.769 0.00 0.00 0.00 2.24
162 163 9.485591 CATTACGTCAAAATTATGTGTCCTTAC 57.514 33.333 0.00 0.00 0.00 2.34
163 164 9.221933 ACATTACGTCAAAATTATGTGTCCTTA 57.778 29.630 0.00 0.00 0.00 2.69
164 165 8.020819 CACATTACGTCAAAATTATGTGTCCTT 58.979 33.333 0.00 0.00 38.52 3.36
165 166 7.389330 TCACATTACGTCAAAATTATGTGTCCT 59.611 33.333 11.50 0.00 41.99 3.85
166 167 7.523219 TCACATTACGTCAAAATTATGTGTCC 58.477 34.615 11.50 0.00 41.99 4.02
167 168 8.227791 ACTCACATTACGTCAAAATTATGTGTC 58.772 33.333 11.50 0.00 41.99 3.67
168 169 8.094798 ACTCACATTACGTCAAAATTATGTGT 57.905 30.769 11.50 0.00 41.99 3.72
169 170 8.948853 AACTCACATTACGTCAAAATTATGTG 57.051 30.769 0.00 0.00 42.43 3.21
170 171 9.959749 AAAACTCACATTACGTCAAAATTATGT 57.040 25.926 0.00 0.00 0.00 2.29
213 214 6.934048 AAATTTTGGGCGAAATCTCAAAAA 57.066 29.167 5.75 0.00 40.78 1.94
214 215 6.934048 AAAATTTTGGGCGAAATCTCAAAA 57.066 29.167 1.75 4.31 41.37 2.44
215 216 6.934048 AAAAATTTTGGGCGAAATCTCAAA 57.066 29.167 3.73 0.00 0.00 2.69
216 217 8.614469 ATTAAAAATTTTGGGCGAAATCTCAA 57.386 26.923 3.73 0.00 0.00 3.02
217 218 9.712305 TTATTAAAAATTTTGGGCGAAATCTCA 57.288 25.926 3.73 0.00 0.00 3.27
222 223 9.495572 ACAGATTATTAAAAATTTTGGGCGAAA 57.504 25.926 3.73 0.00 0.00 3.46
223 224 8.930760 CACAGATTATTAAAAATTTTGGGCGAA 58.069 29.630 3.73 0.00 0.00 4.70
224 225 8.307483 TCACAGATTATTAAAAATTTTGGGCGA 58.693 29.630 3.73 0.00 0.00 5.54
225 226 8.472683 TCACAGATTATTAAAAATTTTGGGCG 57.527 30.769 3.73 0.00 0.00 6.13
279 280 7.543359 TGAAGATGAATGGGTCAGAATTTTT 57.457 32.000 0.00 0.00 40.43 1.94
280 281 7.543359 TTGAAGATGAATGGGTCAGAATTTT 57.457 32.000 0.00 0.00 40.43 1.82
281 282 7.729124 ATTGAAGATGAATGGGTCAGAATTT 57.271 32.000 0.00 0.00 40.43 1.82
282 283 7.729124 AATTGAAGATGAATGGGTCAGAATT 57.271 32.000 0.00 0.00 40.43 2.17
283 284 8.857098 CATAATTGAAGATGAATGGGTCAGAAT 58.143 33.333 0.00 0.00 40.43 2.40
284 285 7.286087 CCATAATTGAAGATGAATGGGTCAGAA 59.714 37.037 0.00 0.00 40.43 3.02
285 286 6.774170 CCATAATTGAAGATGAATGGGTCAGA 59.226 38.462 0.00 0.00 40.43 3.27
286 287 6.516194 GCCATAATTGAAGATGAATGGGTCAG 60.516 42.308 0.00 0.00 40.43 3.51
287 288 5.302568 GCCATAATTGAAGATGAATGGGTCA 59.697 40.000 0.00 0.00 41.67 4.02
288 289 5.302568 TGCCATAATTGAAGATGAATGGGTC 59.697 40.000 0.00 0.00 35.48 4.46
289 290 5.210430 TGCCATAATTGAAGATGAATGGGT 58.790 37.500 0.00 0.00 35.48 4.51
290 291 5.303589 ACTGCCATAATTGAAGATGAATGGG 59.696 40.000 0.00 0.00 35.48 4.00
291 292 6.213677 CACTGCCATAATTGAAGATGAATGG 58.786 40.000 0.00 0.00 37.52 3.16
292 293 5.690409 GCACTGCCATAATTGAAGATGAATG 59.310 40.000 0.00 0.00 0.00 2.67
293 294 5.361571 TGCACTGCCATAATTGAAGATGAAT 59.638 36.000 0.00 0.00 0.00 2.57
294 295 4.705991 TGCACTGCCATAATTGAAGATGAA 59.294 37.500 0.00 0.00 0.00 2.57
295 296 4.271661 TGCACTGCCATAATTGAAGATGA 58.728 39.130 0.00 0.00 0.00 2.92
296 297 4.642445 TGCACTGCCATAATTGAAGATG 57.358 40.909 0.00 0.00 0.00 2.90
297 298 4.463539 TGTTGCACTGCCATAATTGAAGAT 59.536 37.500 0.00 0.00 0.00 2.40
298 299 3.825585 TGTTGCACTGCCATAATTGAAGA 59.174 39.130 0.00 0.00 0.00 2.87
299 300 4.177165 TGTTGCACTGCCATAATTGAAG 57.823 40.909 0.00 0.00 0.00 3.02
300 301 4.597404 TTGTTGCACTGCCATAATTGAA 57.403 36.364 0.00 0.00 0.00 2.69
301 302 4.202192 TGTTTGTTGCACTGCCATAATTGA 60.202 37.500 0.00 0.00 0.00 2.57
302 303 4.056740 TGTTTGTTGCACTGCCATAATTG 58.943 39.130 0.00 0.00 0.00 2.32
303 304 4.333913 TGTTTGTTGCACTGCCATAATT 57.666 36.364 0.00 0.00 0.00 1.40
304 305 4.497300 GATGTTTGTTGCACTGCCATAAT 58.503 39.130 0.00 0.00 0.00 1.28
305 306 3.611293 CGATGTTTGTTGCACTGCCATAA 60.611 43.478 0.00 0.00 0.00 1.90
306 307 2.095314 CGATGTTTGTTGCACTGCCATA 60.095 45.455 0.00 0.00 0.00 2.74
307 308 1.336148 CGATGTTTGTTGCACTGCCAT 60.336 47.619 0.00 0.00 0.00 4.40
308 309 0.030504 CGATGTTTGTTGCACTGCCA 59.969 50.000 0.00 0.00 0.00 4.92
309 310 0.310543 TCGATGTTTGTTGCACTGCC 59.689 50.000 0.00 0.00 0.00 4.85
310 311 2.118228 TTCGATGTTTGTTGCACTGC 57.882 45.000 0.00 0.00 0.00 4.40
311 312 3.856521 TGTTTTCGATGTTTGTTGCACTG 59.143 39.130 0.00 0.00 0.00 3.66
312 313 4.103365 TGTTTTCGATGTTTGTTGCACT 57.897 36.364 0.00 0.00 0.00 4.40
313 314 4.831741 TTGTTTTCGATGTTTGTTGCAC 57.168 36.364 0.00 0.00 0.00 4.57
314 315 7.525688 TTTATTGTTTTCGATGTTTGTTGCA 57.474 28.000 0.00 0.00 0.00 4.08
315 316 8.813263 TTTTTATTGTTTTCGATGTTTGTTGC 57.187 26.923 0.00 0.00 0.00 4.17
336 337 9.675464 TGGTCTACGGATCTTAATGTAATTTTT 57.325 29.630 0.00 0.00 37.87 1.94
337 338 9.106070 GTGGTCTACGGATCTTAATGTAATTTT 57.894 33.333 0.00 0.00 37.87 1.82
338 339 7.713942 GGTGGTCTACGGATCTTAATGTAATTT 59.286 37.037 0.00 0.00 37.87 1.82
339 340 7.070821 AGGTGGTCTACGGATCTTAATGTAATT 59.929 37.037 0.00 0.00 41.28 1.40
340 341 6.553852 AGGTGGTCTACGGATCTTAATGTAAT 59.446 38.462 0.00 0.00 0.00 1.89
341 342 5.895534 AGGTGGTCTACGGATCTTAATGTAA 59.104 40.000 0.00 0.00 0.00 2.41
342 343 5.452255 AGGTGGTCTACGGATCTTAATGTA 58.548 41.667 0.00 0.00 0.00 2.29
343 344 4.287552 AGGTGGTCTACGGATCTTAATGT 58.712 43.478 0.00 0.00 0.00 2.71
344 345 4.939052 AGGTGGTCTACGGATCTTAATG 57.061 45.455 0.00 0.00 0.00 1.90
345 346 4.523558 GCTAGGTGGTCTACGGATCTTAAT 59.476 45.833 0.00 0.00 0.00 1.40
346 347 3.887716 GCTAGGTGGTCTACGGATCTTAA 59.112 47.826 0.00 0.00 0.00 1.85
347 348 3.117776 TGCTAGGTGGTCTACGGATCTTA 60.118 47.826 0.00 0.00 0.00 2.10
348 349 2.308690 GCTAGGTGGTCTACGGATCTT 58.691 52.381 0.00 0.00 0.00 2.40
349 350 1.214673 TGCTAGGTGGTCTACGGATCT 59.785 52.381 0.00 0.00 0.00 2.75
350 351 1.337387 GTGCTAGGTGGTCTACGGATC 59.663 57.143 0.00 0.00 0.00 3.36
351 352 1.400737 GTGCTAGGTGGTCTACGGAT 58.599 55.000 0.00 0.00 0.00 4.18
352 353 0.682209 GGTGCTAGGTGGTCTACGGA 60.682 60.000 0.00 0.00 0.00 4.69
353 354 1.814527 GGTGCTAGGTGGTCTACGG 59.185 63.158 0.00 0.00 0.00 4.02
354 355 1.028330 TCGGTGCTAGGTGGTCTACG 61.028 60.000 0.00 0.00 0.00 3.51
355 356 0.455005 GTCGGTGCTAGGTGGTCTAC 59.545 60.000 0.00 0.00 0.00 2.59
356 357 0.330604 AGTCGGTGCTAGGTGGTCTA 59.669 55.000 0.00 0.00 0.00 2.59
357 358 0.330604 TAGTCGGTGCTAGGTGGTCT 59.669 55.000 0.00 0.00 0.00 3.85
358 359 0.455005 GTAGTCGGTGCTAGGTGGTC 59.545 60.000 0.00 0.00 0.00 4.02
359 360 0.251474 TGTAGTCGGTGCTAGGTGGT 60.251 55.000 0.00 0.00 0.00 4.16
360 361 0.892755 TTGTAGTCGGTGCTAGGTGG 59.107 55.000 0.00 0.00 0.00 4.61
361 362 2.165641 TGATTGTAGTCGGTGCTAGGTG 59.834 50.000 0.00 0.00 0.00 4.00
362 363 2.165845 GTGATTGTAGTCGGTGCTAGGT 59.834 50.000 0.00 0.00 0.00 3.08
363 364 2.427453 AGTGATTGTAGTCGGTGCTAGG 59.573 50.000 0.00 0.00 0.00 3.02
364 365 3.784701 AGTGATTGTAGTCGGTGCTAG 57.215 47.619 0.00 0.00 0.00 3.42
365 366 5.647589 CTTTAGTGATTGTAGTCGGTGCTA 58.352 41.667 0.00 0.00 0.00 3.49
366 367 4.495422 CTTTAGTGATTGTAGTCGGTGCT 58.505 43.478 0.00 0.00 0.00 4.40
367 368 3.062234 GCTTTAGTGATTGTAGTCGGTGC 59.938 47.826 0.00 0.00 0.00 5.01
368 369 4.242475 TGCTTTAGTGATTGTAGTCGGTG 58.758 43.478 0.00 0.00 0.00 4.94
369 370 4.530710 TGCTTTAGTGATTGTAGTCGGT 57.469 40.909 0.00 0.00 0.00 4.69
370 371 4.201724 GCTTGCTTTAGTGATTGTAGTCGG 60.202 45.833 0.00 0.00 0.00 4.79
371 372 4.201724 GGCTTGCTTTAGTGATTGTAGTCG 60.202 45.833 0.00 0.00 0.00 4.18
372 373 4.201724 CGGCTTGCTTTAGTGATTGTAGTC 60.202 45.833 0.00 0.00 0.00 2.59
373 374 3.684788 CGGCTTGCTTTAGTGATTGTAGT 59.315 43.478 0.00 0.00 0.00 2.73
374 375 3.932710 TCGGCTTGCTTTAGTGATTGTAG 59.067 43.478 0.00 0.00 0.00 2.74
375 376 3.932822 TCGGCTTGCTTTAGTGATTGTA 58.067 40.909 0.00 0.00 0.00 2.41
376 377 2.778299 TCGGCTTGCTTTAGTGATTGT 58.222 42.857 0.00 0.00 0.00 2.71
377 378 3.829886 TTCGGCTTGCTTTAGTGATTG 57.170 42.857 0.00 0.00 0.00 2.67
378 379 4.437390 CGAATTCGGCTTGCTTTAGTGATT 60.437 41.667 20.16 0.00 35.37 2.57
379 380 3.063997 CGAATTCGGCTTGCTTTAGTGAT 59.936 43.478 20.16 0.00 35.37 3.06
380 381 2.415168 CGAATTCGGCTTGCTTTAGTGA 59.585 45.455 20.16 0.00 35.37 3.41
381 382 2.159627 ACGAATTCGGCTTGCTTTAGTG 59.840 45.455 29.79 0.00 44.95 2.74
382 383 2.159627 CACGAATTCGGCTTGCTTTAGT 59.840 45.455 29.79 3.14 44.95 2.24
383 384 2.774007 CACGAATTCGGCTTGCTTTAG 58.226 47.619 29.79 0.09 44.95 1.85
384 385 1.135803 GCACGAATTCGGCTTGCTTTA 60.136 47.619 29.79 0.00 44.95 1.85
385 386 0.387239 GCACGAATTCGGCTTGCTTT 60.387 50.000 29.79 5.17 44.95 3.51
386 387 1.210155 GCACGAATTCGGCTTGCTT 59.790 52.632 29.79 5.93 44.95 3.91
387 388 2.870372 GCACGAATTCGGCTTGCT 59.130 55.556 29.79 6.69 44.95 3.91
388 389 2.574212 CGCACGAATTCGGCTTGC 60.574 61.111 29.79 26.68 44.95 4.01
389 390 2.098298 CCGCACGAATTCGGCTTG 59.902 61.111 29.79 20.19 44.95 4.01
394 395 1.775039 ATGATGGCCGCACGAATTCG 61.775 55.000 25.64 25.64 46.33 3.34
395 396 0.040958 GATGATGGCCGCACGAATTC 60.041 55.000 0.00 0.00 0.00 2.17
396 397 1.775039 CGATGATGGCCGCACGAATT 61.775 55.000 0.00 0.00 0.00 2.17
397 398 2.246739 CGATGATGGCCGCACGAAT 61.247 57.895 0.00 0.00 0.00 3.34
398 399 2.889988 CGATGATGGCCGCACGAA 60.890 61.111 0.00 0.00 0.00 3.85
415 416 4.803426 CTCTGGCGAGTCGTGGGC 62.803 72.222 15.08 0.00 32.47 5.36
416 417 4.803426 GCTCTGGCGAGTCGTGGG 62.803 72.222 15.08 6.15 39.53 4.61
417 418 3.753434 AGCTCTGGCGAGTCGTGG 61.753 66.667 15.08 4.90 44.37 4.94
418 419 2.505777 CAGCTCTGGCGAGTCGTG 60.506 66.667 15.08 5.27 44.37 4.35
419 420 4.427661 GCAGCTCTGGCGAGTCGT 62.428 66.667 15.08 0.00 44.37 4.34
433 434 3.065019 ACTACAACAAGTTTTGCGCAG 57.935 42.857 11.31 0.00 0.00 5.18
434 435 3.872182 TCTACTACAACAAGTTTTGCGCA 59.128 39.130 5.66 5.66 0.00 6.09
435 436 4.209112 GTCTACTACAACAAGTTTTGCGC 58.791 43.478 0.00 0.00 0.00 6.09
436 437 5.006358 ACTGTCTACTACAACAAGTTTTGCG 59.994 40.000 0.00 0.00 37.74 4.85
437 438 6.359480 ACTGTCTACTACAACAAGTTTTGC 57.641 37.500 0.00 0.00 37.74 3.68
438 439 7.970384 TCAACTGTCTACTACAACAAGTTTTG 58.030 34.615 0.00 0.00 37.74 2.44
439 440 8.556213 TTCAACTGTCTACTACAACAAGTTTT 57.444 30.769 0.00 0.00 37.74 2.43
440 441 8.556213 TTTCAACTGTCTACTACAACAAGTTT 57.444 30.769 0.00 0.00 37.74 2.66
441 442 8.556213 TTTTCAACTGTCTACTACAACAAGTT 57.444 30.769 0.00 0.00 37.74 2.66
442 443 8.556213 TTTTTCAACTGTCTACTACAACAAGT 57.444 30.769 0.00 0.00 37.74 3.16
443 444 8.665685 ACTTTTTCAACTGTCTACTACAACAAG 58.334 33.333 0.00 0.00 37.74 3.16
444 445 8.556213 ACTTTTTCAACTGTCTACTACAACAA 57.444 30.769 0.00 0.00 37.74 2.83
445 446 7.820386 TGACTTTTTCAACTGTCTACTACAACA 59.180 33.333 0.00 0.00 37.74 3.33
446 447 8.193250 TGACTTTTTCAACTGTCTACTACAAC 57.807 34.615 0.00 0.00 37.74 3.32
447 448 8.958119 ATGACTTTTTCAACTGTCTACTACAA 57.042 30.769 0.00 0.00 37.92 2.41
448 449 8.201464 TGATGACTTTTTCAACTGTCTACTACA 58.799 33.333 0.00 0.00 37.92 2.74
449 450 8.589335 TGATGACTTTTTCAACTGTCTACTAC 57.411 34.615 0.00 0.00 37.92 2.73
450 451 9.208022 CATGATGACTTTTTCAACTGTCTACTA 57.792 33.333 0.00 0.00 37.92 1.82
451 452 7.308229 GCATGATGACTTTTTCAACTGTCTACT 60.308 37.037 0.00 0.00 37.92 2.57
452 453 6.798959 GCATGATGACTTTTTCAACTGTCTAC 59.201 38.462 0.00 0.00 37.92 2.59
453 454 6.712095 AGCATGATGACTTTTTCAACTGTCTA 59.288 34.615 0.00 0.00 37.92 2.59
454 455 5.533903 AGCATGATGACTTTTTCAACTGTCT 59.466 36.000 0.00 0.00 37.92 3.41
455 456 5.766222 AGCATGATGACTTTTTCAACTGTC 58.234 37.500 0.00 0.00 37.92 3.51
456 457 5.779529 AGCATGATGACTTTTTCAACTGT 57.220 34.783 0.00 0.00 37.92 3.55
457 458 7.365741 ACTTAGCATGATGACTTTTTCAACTG 58.634 34.615 0.00 0.00 37.92 3.16
458 459 7.308830 GGACTTAGCATGATGACTTTTTCAACT 60.309 37.037 0.00 0.00 37.92 3.16
459 460 6.803807 GGACTTAGCATGATGACTTTTTCAAC 59.196 38.462 0.00 0.00 37.92 3.18
460 461 6.071952 GGGACTTAGCATGATGACTTTTTCAA 60.072 38.462 0.00 0.00 37.92 2.69
461 462 5.415701 GGGACTTAGCATGATGACTTTTTCA 59.584 40.000 0.00 0.00 39.11 2.69
462 463 5.415701 TGGGACTTAGCATGATGACTTTTTC 59.584 40.000 0.00 0.00 0.00 2.29
463 464 5.324409 TGGGACTTAGCATGATGACTTTTT 58.676 37.500 0.00 0.00 0.00 1.94
464 465 4.922206 TGGGACTTAGCATGATGACTTTT 58.078 39.130 0.00 0.00 0.00 2.27
465 466 4.574674 TGGGACTTAGCATGATGACTTT 57.425 40.909 0.00 0.00 0.00 2.66
466 467 4.018960 AGTTGGGACTTAGCATGATGACTT 60.019 41.667 0.00 0.00 29.87 3.01
467 468 3.521126 AGTTGGGACTTAGCATGATGACT 59.479 43.478 0.00 0.00 29.87 3.41
468 469 3.624861 CAGTTGGGACTTAGCATGATGAC 59.375 47.826 0.00 0.00 32.54 3.06
469 470 3.877559 CAGTTGGGACTTAGCATGATGA 58.122 45.455 0.00 0.00 32.54 2.92
470 471 2.357009 GCAGTTGGGACTTAGCATGATG 59.643 50.000 0.00 0.00 32.54 3.07
471 472 2.648059 GCAGTTGGGACTTAGCATGAT 58.352 47.619 0.00 0.00 32.54 2.45
472 473 1.340017 GGCAGTTGGGACTTAGCATGA 60.340 52.381 0.00 0.00 32.54 3.07
473 474 1.098050 GGCAGTTGGGACTTAGCATG 58.902 55.000 0.00 0.00 32.54 4.06
474 475 0.392998 CGGCAGTTGGGACTTAGCAT 60.393 55.000 0.00 0.00 32.54 3.79
475 476 1.003839 CGGCAGTTGGGACTTAGCA 60.004 57.895 0.00 0.00 32.54 3.49
476 477 2.399356 GCGGCAGTTGGGACTTAGC 61.399 63.158 0.00 0.00 32.54 3.09
477 478 1.745489 GGCGGCAGTTGGGACTTAG 60.745 63.158 3.07 0.00 32.54 2.18
478 479 2.349755 GGCGGCAGTTGGGACTTA 59.650 61.111 3.07 0.00 32.54 2.24
481 482 4.778143 ATCGGCGGCAGTTGGGAC 62.778 66.667 10.53 0.00 0.00 4.46
482 483 4.776322 CATCGGCGGCAGTTGGGA 62.776 66.667 10.53 0.00 0.00 4.37
483 484 4.776322 TCATCGGCGGCAGTTGGG 62.776 66.667 10.53 0.00 0.00 4.12
484 485 1.861542 TTTTCATCGGCGGCAGTTGG 61.862 55.000 10.53 0.00 0.00 3.77
485 486 0.454957 CTTTTCATCGGCGGCAGTTG 60.455 55.000 10.53 3.38 0.00 3.16
486 487 0.605319 TCTTTTCATCGGCGGCAGTT 60.605 50.000 10.53 0.00 0.00 3.16
487 488 0.605319 TTCTTTTCATCGGCGGCAGT 60.605 50.000 10.53 0.00 0.00 4.40
488 489 0.097674 CTTCTTTTCATCGGCGGCAG 59.902 55.000 10.53 0.00 0.00 4.85
489 490 1.922135 GCTTCTTTTCATCGGCGGCA 61.922 55.000 10.53 0.00 0.00 5.69
490 491 1.226407 GCTTCTTTTCATCGGCGGC 60.226 57.895 7.21 0.00 0.00 6.53
491 492 1.060937 CGCTTCTTTTCATCGGCGG 59.939 57.895 7.21 0.00 39.12 6.13
492 493 0.996462 TACGCTTCTTTTCATCGGCG 59.004 50.000 0.00 0.00 46.47 6.46
493 494 2.029365 GTCTACGCTTCTTTTCATCGGC 59.971 50.000 0.00 0.00 0.00 5.54
494 495 2.603560 GGTCTACGCTTCTTTTCATCGG 59.396 50.000 0.00 0.00 0.00 4.18
495 496 2.279136 CGGTCTACGCTTCTTTTCATCG 59.721 50.000 0.00 0.00 34.82 3.84
496 497 3.508762 TCGGTCTACGCTTCTTTTCATC 58.491 45.455 0.00 0.00 43.86 2.92
497 498 3.587797 TCGGTCTACGCTTCTTTTCAT 57.412 42.857 0.00 0.00 43.86 2.57
498 499 3.374220 TTCGGTCTACGCTTCTTTTCA 57.626 42.857 0.00 0.00 43.86 2.69
499 500 3.123116 CCTTTCGGTCTACGCTTCTTTTC 59.877 47.826 0.00 0.00 43.86 2.29
500 501 3.064931 CCTTTCGGTCTACGCTTCTTTT 58.935 45.455 0.00 0.00 43.86 2.27
501 502 2.298163 TCCTTTCGGTCTACGCTTCTTT 59.702 45.455 0.00 0.00 43.86 2.52
502 503 1.891150 TCCTTTCGGTCTACGCTTCTT 59.109 47.619 0.00 0.00 43.86 2.52
503 504 1.542492 TCCTTTCGGTCTACGCTTCT 58.458 50.000 0.00 0.00 43.86 2.85
504 505 2.461903 GATCCTTTCGGTCTACGCTTC 58.538 52.381 0.00 0.00 43.86 3.86
505 506 1.136500 GGATCCTTTCGGTCTACGCTT 59.864 52.381 3.84 0.00 43.86 4.68
506 507 0.745468 GGATCCTTTCGGTCTACGCT 59.255 55.000 3.84 0.00 43.86 5.07
507 508 0.458669 TGGATCCTTTCGGTCTACGC 59.541 55.000 14.23 0.00 43.86 4.42
508 509 1.536284 GCTGGATCCTTTCGGTCTACG 60.536 57.143 14.23 0.00 46.11 3.51
509 510 1.202545 GGCTGGATCCTTTCGGTCTAC 60.203 57.143 14.23 0.00 0.00 2.59
510 511 1.120530 GGCTGGATCCTTTCGGTCTA 58.879 55.000 14.23 0.00 0.00 2.59
511 512 0.618968 AGGCTGGATCCTTTCGGTCT 60.619 55.000 14.23 2.19 30.82 3.85
512 513 0.462759 CAGGCTGGATCCTTTCGGTC 60.463 60.000 14.23 0.00 33.25 4.79
513 514 1.604378 CAGGCTGGATCCTTTCGGT 59.396 57.895 14.23 0.00 33.25 4.69
514 515 1.153086 CCAGGCTGGATCCTTTCGG 60.153 63.158 29.96 3.40 40.96 4.30
515 516 0.830648 TACCAGGCTGGATCCTTTCG 59.169 55.000 38.99 10.29 40.96 3.46
516 517 4.103311 AGTTATACCAGGCTGGATCCTTTC 59.897 45.833 38.99 20.45 40.96 2.62
517 518 4.047883 AGTTATACCAGGCTGGATCCTTT 58.952 43.478 38.99 18.50 40.96 3.11
518 519 3.392616 CAGTTATACCAGGCTGGATCCTT 59.607 47.826 38.99 19.27 40.96 3.36
519 520 2.975489 CAGTTATACCAGGCTGGATCCT 59.025 50.000 38.99 21.88 40.96 3.24
520 521 3.409026 CAGTTATACCAGGCTGGATCC 57.591 52.381 38.99 20.15 40.96 3.36
525 526 3.627395 TCAACCAGTTATACCAGGCTG 57.373 47.619 7.75 7.75 0.00 4.85
526 527 4.650972 TTTCAACCAGTTATACCAGGCT 57.349 40.909 0.00 0.00 0.00 4.58
527 528 5.914898 AATTTCAACCAGTTATACCAGGC 57.085 39.130 0.00 0.00 0.00 4.85
528 529 9.184523 TGATAAATTTCAACCAGTTATACCAGG 57.815 33.333 0.00 0.00 0.00 4.45
530 531 9.967451 TCTGATAAATTTCAACCAGTTATACCA 57.033 29.630 0.00 0.00 0.00 3.25
592 593 2.166254 CCCCGGGAAATCTGAAACATTG 59.834 50.000 26.32 0.00 0.00 2.82
613 614 0.243636 CTGCCGAATTTTCACACCCC 59.756 55.000 0.00 0.00 0.00 4.95
616 617 5.051307 GGTAAAAACTGCCGAATTTTCACAC 60.051 40.000 0.00 0.00 0.00 3.82
642 643 5.405269 GCCACATGAATTTACCAGAACAAAC 59.595 40.000 0.00 0.00 0.00 2.93
643 644 5.510520 GGCCACATGAATTTACCAGAACAAA 60.511 40.000 0.00 0.00 0.00 2.83
649 650 1.756538 GGGGCCACATGAATTTACCAG 59.243 52.381 4.39 0.00 0.00 4.00
666 667 1.201429 AAGTAGGCTGACAGTGGGGG 61.201 60.000 3.99 0.00 0.00 5.40
697 698 9.857957 GCTCACAGTTCTAGTATTTTAGTACTT 57.142 33.333 0.00 0.00 36.39 2.24
698 699 8.468399 GGCTCACAGTTCTAGTATTTTAGTACT 58.532 37.037 0.00 0.00 38.42 2.73
699 700 8.468399 AGGCTCACAGTTCTAGTATTTTAGTAC 58.532 37.037 0.00 0.00 0.00 2.73
700 701 8.591114 AGGCTCACAGTTCTAGTATTTTAGTA 57.409 34.615 0.00 0.00 0.00 1.82
701 702 7.483580 AGGCTCACAGTTCTAGTATTTTAGT 57.516 36.000 0.00 0.00 0.00 2.24
702 703 7.921745 GGTAGGCTCACAGTTCTAGTATTTTAG 59.078 40.741 0.00 0.00 0.00 1.85
703 704 7.415989 CGGTAGGCTCACAGTTCTAGTATTTTA 60.416 40.741 0.00 0.00 0.00 1.52
709 710 2.093106 CGGTAGGCTCACAGTTCTAGT 58.907 52.381 0.00 0.00 0.00 2.57
710 711 1.405821 CCGGTAGGCTCACAGTTCTAG 59.594 57.143 0.00 0.00 0.00 2.43
711 712 1.471119 CCGGTAGGCTCACAGTTCTA 58.529 55.000 0.00 0.00 0.00 2.10
712 713 2.277858 CCGGTAGGCTCACAGTTCT 58.722 57.895 0.00 0.00 0.00 3.01
897 921 1.473550 TTTACCTGGGGATTTGGGGT 58.526 50.000 0.00 0.00 0.00 4.95
905 929 0.391927 CGTTGCGATTTACCTGGGGA 60.392 55.000 0.00 0.00 0.00 4.81
996 1048 3.406595 GAAGGAGCGGGACATGGGG 62.407 68.421 0.00 0.00 0.00 4.96
1081 1134 3.733960 GGCACGCGGGGAGAAAAC 61.734 66.667 11.92 0.00 0.00 2.43
1334 1395 4.785453 CCCTGGCACGCCTCCTTC 62.785 72.222 9.92 0.00 36.94 3.46
1549 1610 4.847444 GGAGCCTCTTGAGCCGGC 62.847 72.222 21.89 21.89 44.09 6.13
1550 1611 3.080121 AGGAGCCTCTTGAGCCGG 61.080 66.667 0.00 0.00 0.00 6.13
1551 1612 2.186384 CAGGAGCCTCTTGAGCCG 59.814 66.667 0.00 0.00 0.00 5.52
1598 1659 3.207669 GCCAATGCCCTCTGCTCG 61.208 66.667 0.00 0.00 42.00 5.03
1703 1764 2.032681 AGGTGCCGAAACTGCTCC 59.967 61.111 0.00 0.00 41.53 4.70
1745 1806 0.526524 CGGCGTCTCTGAACTCATCC 60.527 60.000 0.00 0.00 0.00 3.51
1817 1878 2.472695 TGGAATCCAACTTGGTCTCG 57.527 50.000 0.00 0.00 39.03 4.04
1841 1902 1.393487 GGAACTCCTCGGCTACCCTC 61.393 65.000 0.00 0.00 0.00 4.30
1890 1951 4.344865 GCCTTCCTCGTGGGCCAA 62.345 66.667 8.40 0.00 39.96 4.52
2021 2082 0.684535 TCAAGGACGCAATCTCACCA 59.315 50.000 0.00 0.00 0.00 4.17
2033 2094 0.248843 CCAGTGAGCTCCTCAAGGAC 59.751 60.000 12.15 0.07 42.46 3.85
2067 2128 5.748402 ACAATACTCCATCTCATTGAGCAA 58.252 37.500 8.89 0.00 33.56 3.91
2228 2289 2.223611 CAGTTTCTCAGTGCAGCTTCTG 59.776 50.000 10.55 10.55 34.12 3.02
2274 2335 4.104383 TCTCAAGCTTTCCCATCTTTGT 57.896 40.909 0.00 0.00 0.00 2.83
2375 2436 0.038709 GGAGCTCCAGTGCGCTATAG 60.039 60.000 28.43 1.17 36.45 1.31
2420 2481 3.003897 CCTCTACAGCAAGACGGACTATC 59.996 52.174 0.00 0.00 0.00 2.08
2442 2503 4.233005 GAGCAGGAATCAGAAAACTTTGC 58.767 43.478 0.00 0.00 0.00 3.68
2519 2580 5.117584 TGATTTTTCACAGCAGCAACATTT 58.882 33.333 0.00 0.00 0.00 2.32
2525 2586 4.059511 CCAATTGATTTTTCACAGCAGCA 58.940 39.130 7.12 0.00 0.00 4.41
2562 2623 1.284198 AGCTTGGGACTGAGCAATGAT 59.716 47.619 0.00 0.00 39.83 2.45
2674 2735 0.600557 TTTGTATGCCCCAAGTTGCG 59.399 50.000 0.00 0.00 0.00 4.85
2745 2806 2.488204 AGGCTCTTTTCCTTCTCTGC 57.512 50.000 0.00 0.00 0.00 4.26
2994 3055 0.398522 TCCCTGTGTGACACCTCAGT 60.399 55.000 13.85 0.00 32.73 3.41
3005 3066 2.118403 TCTCCCTTTCTTCCCTGTGT 57.882 50.000 0.00 0.00 0.00 3.72
3056 3117 2.862921 GCTCTTACTATCGGAAAGGGCG 60.863 54.545 0.00 0.00 37.01 6.13
3300 3361 5.792741 CTCTTCCTTCATCTCAGAAACAGT 58.207 41.667 0.00 0.00 0.00 3.55
3621 3682 6.804534 TTGCATGTCAACTTTTAACTTTCG 57.195 33.333 0.00 0.00 0.00 3.46
3622 3683 8.185003 AGTTTGCATGTCAACTTTTAACTTTC 57.815 30.769 5.98 0.00 33.73 2.62
3746 3807 9.547753 TCAACTATGCTTGATAACTTATCCTTC 57.452 33.333 6.37 0.00 34.26 3.46
3817 3878 3.947834 ACCCAAATTATCTTCTTCCAGCG 59.052 43.478 0.00 0.00 0.00 5.18
4439 4500 8.924511 TCAACTCTTCCAAATGTTCTTCTAAT 57.075 30.769 0.00 0.00 0.00 1.73
4488 4549 3.067106 TCCTTTCTTGAACAGCGACATC 58.933 45.455 0.00 0.00 0.00 3.06
4493 4554 3.621794 CTGTTTCCTTTCTTGAACAGCG 58.378 45.455 2.61 0.00 41.48 5.18
4500 4561 7.930217 TCATCAACTAACTGTTTCCTTTCTTG 58.070 34.615 0.00 0.00 36.63 3.02
4546 4607 2.821546 CATGAATTGCTGCTCCAATGG 58.178 47.619 0.00 0.00 35.70 3.16
4657 4718 5.790593 TCACGTTTGGTTTCTCTAAGCTAT 58.209 37.500 0.00 0.00 35.28 2.97
4684 4745 1.153289 CTGGTCAGGGGCGAATGAG 60.153 63.158 0.00 0.00 0.00 2.90
4765 4826 2.368548 ACACAATCTGACTGCACCTACA 59.631 45.455 0.00 0.00 0.00 2.74
5049 5112 5.472137 TCACCTTACAAATAACAACTCAGGC 59.528 40.000 0.00 0.00 0.00 4.85
5225 5288 8.183536 TCTACGACACGAGTAATTGCTAAAATA 58.816 33.333 0.00 0.00 0.00 1.40
5342 5405 8.558700 CAAACTAAAAACTGCAAAGCCAAATAT 58.441 29.630 0.00 0.00 0.00 1.28
5415 5478 5.254115 GACAGGTTATATTAGCATTCCCCC 58.746 45.833 0.00 0.00 0.00 5.40
5416 5479 5.014228 AGGACAGGTTATATTAGCATTCCCC 59.986 44.000 7.03 0.00 0.00 4.81
5417 5480 5.940470 CAGGACAGGTTATATTAGCATTCCC 59.060 44.000 7.03 0.00 0.00 3.97
5418 5481 6.769512 TCAGGACAGGTTATATTAGCATTCC 58.230 40.000 3.75 3.75 0.00 3.01
5419 5482 8.854614 AATCAGGACAGGTTATATTAGCATTC 57.145 34.615 0.00 0.00 0.00 2.67
5420 5483 9.646522 AAAATCAGGACAGGTTATATTAGCATT 57.353 29.630 0.00 0.00 0.00 3.56
5421 5484 9.071276 CAAAATCAGGACAGGTTATATTAGCAT 57.929 33.333 0.00 0.00 0.00 3.79
5422 5485 8.271458 TCAAAATCAGGACAGGTTATATTAGCA 58.729 33.333 0.00 0.00 0.00 3.49
5423 5486 8.677148 TCAAAATCAGGACAGGTTATATTAGC 57.323 34.615 0.00 0.00 0.00 3.09
5425 5488 9.120538 GCTTCAAAATCAGGACAGGTTATATTA 57.879 33.333 0.00 0.00 0.00 0.98
5426 5489 7.836183 AGCTTCAAAATCAGGACAGGTTATATT 59.164 33.333 0.00 0.00 0.00 1.28
5427 5490 7.349598 AGCTTCAAAATCAGGACAGGTTATAT 58.650 34.615 0.00 0.00 0.00 0.86
5428 5491 6.721318 AGCTTCAAAATCAGGACAGGTTATA 58.279 36.000 0.00 0.00 0.00 0.98
5439 5502 6.810182 CCAATTGGAGTTAGCTTCAAAATCAG 59.190 38.462 20.50 0.00 42.95 2.90
5441 5504 6.587608 CACCAATTGGAGTTAGCTTCAAAATC 59.412 38.462 31.22 0.00 42.95 2.17
5463 5526 4.982295 GCATTTCTTTGTCTTTGGTACACC 59.018 41.667 0.00 0.00 39.29 4.16
5464 5527 5.587289 TGCATTTCTTTGTCTTTGGTACAC 58.413 37.500 0.00 0.00 39.29 2.90
5490 5553 9.651913 AACTGTACACAACAATTTTCAAAATCT 57.348 25.926 0.00 0.00 37.74 2.40
5491 5554 9.687717 CAACTGTACACAACAATTTTCAAAATC 57.312 29.630 0.00 0.00 37.74 2.17
5492 5555 8.174422 GCAACTGTACACAACAATTTTCAAAAT 58.826 29.630 0.00 0.00 37.74 1.82
5493 5556 7.386299 AGCAACTGTACACAACAATTTTCAAAA 59.614 29.630 0.00 0.00 37.74 2.44
5495 5558 6.393990 AGCAACTGTACACAACAATTTTCAA 58.606 32.000 0.00 0.00 37.74 2.69
5496 5559 5.960113 AGCAACTGTACACAACAATTTTCA 58.040 33.333 0.00 0.00 37.74 2.69
5497 5560 6.751888 AGAAGCAACTGTACACAACAATTTTC 59.248 34.615 0.00 0.00 37.74 2.29
5498 5561 6.531240 CAGAAGCAACTGTACACAACAATTTT 59.469 34.615 0.00 0.00 37.74 1.82
5499 5562 6.035843 CAGAAGCAACTGTACACAACAATTT 58.964 36.000 0.00 0.00 37.74 1.82
5500 5563 5.581605 CAGAAGCAACTGTACACAACAATT 58.418 37.500 0.00 0.00 37.74 2.32
5501 5564 4.498009 GCAGAAGCAACTGTACACAACAAT 60.498 41.667 10.84 0.00 41.58 2.71
5504 5567 2.614057 AGCAGAAGCAACTGTACACAAC 59.386 45.455 10.84 0.00 45.49 3.32
5507 5570 3.621794 CAAAGCAGAAGCAACTGTACAC 58.378 45.455 10.84 0.00 45.49 2.90
5514 5577 8.534778 GTTATTAATATGCAAAGCAGAAGCAAC 58.465 33.333 0.00 0.00 43.65 4.17
5517 5580 7.917505 ACAGTTATTAATATGCAAAGCAGAAGC 59.082 33.333 0.00 0.00 43.65 3.86
5523 5586 8.397906 TGTCAGACAGTTATTAATATGCAAAGC 58.602 33.333 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.